Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold TCGA-OR-A5J1-01A-11D-A29H-01 TCGA-OR-A5J2-01A-11D-A29H-01 TCGA-OR-A5J3-01A-11D-A29H-01 TCGA-OR-A5J4-01A-11D-A29H-01 TCGA-OR-A5J5-01A-11D-A29H-01 TCGA-OR-A5J6-01A-31D-A29H-01 TCGA-OR-A5J7-01A-11D-A29H-01 TCGA-OR-A5J8-01A-11D-A29H-01 TCGA-OR-A5J9-01A-11D-A29H-01 TCGA-OR-A5JA-01A-11D-A29H-01 TCGA-OR-A5JB-01A-11D-A29H-01 TCGA-OR-A5JC-01A-11D-A29H-01 TCGA-OR-A5JD-01A-11D-A29H-01 TCGA-OR-A5JE-01A-11D-A29H-01 TCGA-OR-A5JF-01A-11D-A29H-01 TCGA-OR-A5JG-01A-11D-A29H-01 TCGA-OR-A5JH-01A-11D-A309-01 TCGA-OR-A5JI-01A-11D-A29H-01 TCGA-OR-A5JJ-01A-11D-A29H-01 TCGA-OR-A5JK-01A-11D-A29H-01 TCGA-OR-A5JL-01A-11D-A29H-01 TCGA-OR-A5JM-01A-11D-A29H-01 TCGA-OR-A5JO-01A-11D-A29H-01 TCGA-OR-A5JP-01A-11D-A29H-01 TCGA-OR-A5JQ-01A-11D-A29H-01 TCGA-OR-A5JR-01A-11D-A29H-01 TCGA-OR-A5JS-01A-11D-A29H-01 TCGA-OR-A5JT-01A-11D-A29H-01 TCGA-OR-A5JU-01A-11D-A309-01 TCGA-OR-A5JV-01A-11D-A29H-01 TCGA-OR-A5JW-01A-11D-A29H-01 TCGA-OR-A5JX-01A-11D-A29H-01 TCGA-OR-A5JY-01A-31D-A29H-01 TCGA-OR-A5JZ-01A-11D-A29H-01 TCGA-OR-A5K0-01A-11D-A29H-01 TCGA-OR-A5K1-01A-11D-A29H-01 TCGA-OR-A5K2-01A-11D-A29H-01 TCGA-OR-A5K3-01A-11D-A29H-01 TCGA-OR-A5K4-01A-11D-A29H-01 TCGA-OR-A5K5-01A-11D-A29H-01 TCGA-OR-A5K6-01A-11D-A29H-01 TCGA-OR-A5K8-01A-11D-A29H-01 TCGA-OR-A5K9-01A-11D-A29H-01 TCGA-OR-A5KB-01A-11D-A309-01 TCGA-OR-A5KO-01A-11D-A29H-01 TCGA-OR-A5KP-01A-11D-A309-01 TCGA-OR-A5KQ-01A-11D-A309-01 TCGA-OR-A5KS-01A-11D-A309-01 TCGA-OR-A5KT-01A-11D-A29H-01 TCGA-OR-A5KU-01A-11D-A29H-01 TCGA-OR-A5KV-01A-11D-A29H-01 TCGA-OR-A5KW-01A-11D-A29H-01 TCGA-OR-A5KX-01A-11D-A29H-01 TCGA-OR-A5KY-01A-11D-A29H-01 TCGA-OR-A5KZ-01A-11D-A29H-01 TCGA-OR-A5L1-01A-11D-A309-01 TCGA-OR-A5L2-01A-11D-A309-01 TCGA-OR-A5L3-01A-11D-A29H-01 TCGA-OR-A5L4-01A-11D-A29H-01 TCGA-OR-A5L5-01A-11D-A29H-01 TCGA-OR-A5L6-01A-11D-A29H-01 TCGA-OR-A5L8-01A-11D-A29H-01 TCGA-OR-A5L9-01A-11D-A29H-01 TCGA-OR-A5LA-01A-11D-A29H-01 TCGA-OR-A5LB-01A-11D-A29H-01 TCGA-OR-A5LC-01A-11D-A29H-01 TCGA-OR-A5LD-01A-11D-A29H-01 TCGA-OR-A5LE-01A-11D-A29H-01 TCGA-OR-A5LF-01A-11D-A309-01 TCGA-OR-A5LG-01A-11D-A29H-01 TCGA-OR-A5LH-01A-11D-A29H-01 TCGA-OR-A5LI-01A-11D-A309-01 TCGA-OR-A5LJ-01A-11D-A29H-01 TCGA-OR-A5LK-01A-11D-A29H-01 TCGA-OR-A5LL-01A-11D-A29H-01 TCGA-OR-A5LM-01A-11D-A29H-01 TCGA-OR-A5LN-01A-11D-A29H-01 TCGA-OR-A5LO-01A-11D-A29H-01 TCGA-OR-A5LP-01A-11D-A29H-01 TCGA-OR-A5LR-01A-11D-A29H-01 TCGA-OR-A5LS-01A-11D-A29H-01 TCGA-OR-A5LT-01A-11D-A29H-01 TCGA-OU-A5PI-01A-12D-A29H-01 TCGA-P6-A5OG-01A-22D-A29H-01 TCGA-P6-A5OH-01A-11D-A309-01 TCGA-PA-A5YG-01A-11D-A29H-01 TCGA-PK-A5H9-01A-11D-A29H-01 TCGA-PK-A5HA-01A-11D-A29H-01 TCGA-PK-A5HB-01A-11D-A29H-01 TCGA-PK-A5HC-01A-11D-A309-01 Amplification Peak 1 1q22 chr1:120523956-155582840(probes 67527:70182) chr1:155024310-155083455(probes 69961:69975) chr1:155024310-155095653(probes 69961:69978) 0.11282 0.11282 0: t<0.1; 1: 0.10.9 2 2 0 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 Amplification Peak 2 4p16.3 chr4:1-2496016(probes 365372:365884) chr4:1778802-1816689(probes 365595:365601) chr4:1-2709194(probes 365372:365951) 0.038099 0.038099 0: t<0.1; 1: 0.10.9 2 0 0 1 2 0 1 0 2 1 0 1 0 0 2 0 1 1 2 1 2 0 0 1 1 2 0 2 0 1 0 0 0 0 0 0 0 2 2 1 0 2 0 1 2 0 0 1 1 2 0 2 0 0 0 2 0 0 0 0 0 0 0 2 2 0 0 0 2 0 2 0 0 2 1 2 1 0 0 0 1 2 1 0 0 0 0 0 0 1 Amplification Peak 3 5p15.33 chr5:1288616-1300024(probes 467573:467575) chr5:1288662-1299328(probes 467574:467574) chr5:1-1350010(probes 467519:467590) 1.7994e-08 1.7994e-08 0: t<0.1; 1: 0.10.9 2 0 2 1 2 1 2 1 2 1 0 2 0 1 2 2 1 1 2 1 2 0 0 0 1 2 0 2 0 1 2 0 2 2 0 2 2 2 2 1 0 2 2 1 2 0 0 2 0 2 0 2 2 0 1 2 0 0 2 2 2 2 2 2 2 2 0 0 2 2 2 1 2 2 2 2 1 2 2 2 1 2 1 0 1 2 0 0 0 0 Amplification Peak 4 5q35.3 chr5:176723780-176833588(probes 565926:565974) chr5:176797344-176832557(probes 565962:565973) chr5:163240623-180915260(probes 557420:567549) 0.0022193 0.0022193 0: t<0.1; 1: 0.10.9 1 0 2 1 2 1 1 0 1 1 0 2 0 1 2 2 1 1 2 1 2 0 0 0 1 2 2 2 0 1 1 2 0 2 0 2 0 2 2 1 0 2 0 2 2 0 0 2 0 2 0 2 0 1 0 2 0 0 2 2 2 2 2 2 2 1 0 0 2 0 2 0 2 2 2 2 1 2 2 2 2 2 2 1 1 2 0 2 0 1 Amplification Peak 5 6p21.31 chr6:36197374-36214490(probes 588308:588320) chr6:36197705-36212455(probes 588309:588319) chr6:36197705-36215692(probes 588309:588322) 0.20541 0.20541 0: t<0.1; 1: 0.10.9 0 0 0 2 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 0 0 0 0 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 2 Amplification Peak 6 6q24.3 chr6:147060843-148023227(probes 649502:650104) chr6:147570724-147597369(probes 649826:649837) chr6:147570724-147605981(probes 649826:649840) 0.12727 0.12727 0: t<0.1; 1: 0.10.9 0 0 0 0 0 2 0 2 0 1 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2 0 0 0 0 2 0 1 2 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 2 Amplification Peak 7 7p22.1 chr7:1-24087697(probes 663548:675696) chr7:5581514-5582394(probes 665395:665395) chr7:5581514-5583044(probes 665395:665398) 0.24436 0.24436 0: t<0.1; 1: 0.10.9 0 1 2 0 1 1 1 2 0 2 0 0 0 0 2 1 1 0 2 1 2 0 0 0 1 2 0 1 0 1 0 1 2 0 0 2 0 2 0 1 1 2 0 0 2 0 0 2 0 1 0 2 1 2 1 1 1 0 2 0 0 1 0 2 2 1 1 2 1 0 2 0 2 2 1 2 1 2 2 0 1 0 1 0 2 2 0 0 0 1 Amplification Peak 8 9q31.3 chr9:114596042-114618032(probes 877876:877900) chr9:114598961-114618020(probes 877877:877899) chr9:114584032-114627937(probes 877867:877905) 0.10071 0.10071 0: t<0.1; 1: 0.10.9 0 0 0 2 2 0 2 1 1 1 0 0 0 1 2 2 1 0 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 2 0 1 2 1 0 2 0 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 2 2 0 1 0 0 0 0 0 1 2 1 0 1 0 0 0 0 1 Amplification Peak 9 12q14.1 chr12:58080141-58481453(probes 1080053:1080267) chr12:58105108-58168417(probes 1080061:1080094) chr12:57678571-60459369(probes 1079870:1081617) 0.022038 0.022038 0: t<0.1; 1: 0.10.9 0 2 2 1 2 1 2 1 2 2 0 1 0 1 2 2 1 1 2 1 2 2 0 1 1 2 0 2 0 1 0 1 2 2 0 2 1 2 2 2 0 2 2 0 0 1 0 2 2 2 0 2 2 2 2 2 1 0 2 2 2 1 2 2 2 1 2 0 2 0 2 1 2 2 0 2 1 2 2 2 1 2 1 0 1 2 0 2 0 2 Amplification Peak 10 14q11.2 chr14:21010467-23970250(probes 1180703:1181571) chr14:23575826-23616783(probes 1181396:1181425) chr14:21011105-23973042(probes 1180704:1181573) 0.056464 0.056464 0: t<0.1; 1: 0.10.9 0 0 2 1 2 0 0 0 2 2 0 1 0 1 0 1 0 0 2 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 2 1 0 0 0 0 0 2 2 0 0 0 1 0 2 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 1 1 0 2 0 0 1 0 2 0 0 0 0 0 0 1 Amplification Peak 11 16p13.3 chr16:1-5327725(probes 1273766:1275488) chr16:2248438-2254007(probes 1274149:1274149) chr16:2248438-2266802(probes 1274149:1274152) 0.22898 0.22898 0: t<0.1; 1: 0.10.9 2 0 2 1 2 0 0 0 1 1 0 1 0 0 2 1 1 1 2 1 1 0 0 0 1 2 0 2 0 1 0 1 0 2 0 2 0 2 2 1 0 2 0 0 2 0 0 2 0 2 0 2 0 1 1 2 0 0 2 2 2 1 2 2 0 1 1 0 2 0 0 0 0 0 1 2 0 0 2 2 1 1 1 0 0 2 0 0 0 2 Amplification Peak 12 16q22.1 chr16:69367997-69491844(probes 1301869:1301920) chr16:69383137-69466215(probes 1301878:1301912) chr16:69246837-69850150(probes 1301822:1302087) 0.01983 0.022038 0: t<0.1; 1: 0.10.9 0 0 2 2 2 0 1 0 1 1 0 1 0 1 2 1 1 1 2 1 0 0 0 1 1 2 0 2 0 1 0 1 0 2 0 2 0 2 2 0 0 2 0 0 2 0 0 2 0 1 0 2 2 1 1 2 1 0 2 2 2 1 2 2 0 1 2 0 2 2 0 2 0 0 1 2 0 1 2 2 1 1 2 1 2 2 0 0 0 0 Amplification Peak 13 16q24.2 chr16:87736713-88204631(probes 1313935:1314120) chr16:87910281-88032124(probes 1314028:1314080) chr16:87910281-88037327(probes 1314028:1314083) 0.12727 0.18056 0: t<0.1; 1: 0.10.9 2 0 2 0 2 0 0 0 1 1 0 1 0 1 2 1 1 1 2 1 0 0 0 0 1 2 0 2 0 1 0 1 0 2 0 2 0 2 2 0 0 2 0 0 2 0 0 2 0 1 0 2 0 1 1 2 0 0 2 2 2 1 2 2 0 1 0 0 2 0 0 0 0 0 1 2 0 2 2 2 1 1 1 1 0 2 0 0 0 1 Amplification Peak 14 17q25.3 chr17:79999378-80024315(probes 1350603:1350610) chr17:79999812-80022360(probes 1350604:1350609) chr17:79820675-80217380(probes 1350588:1350629) 0.024369 0.024369 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 2 0 0 0 2 0 0 2 0 0 2 0 1 Amplification Peak 15 19p13.12 chr19:15293986-16628163(probes 1398850:1399568) chr19:15376833-15595142(probes 1398906:1399009) chr19:15294002-16736594(probes 1398851:1399592) 0.036259 0.036259 0: t<0.1; 1: 0.10.9 0 1 2 2 2 1 1 0 2 2 0 1 0 1 2 2 1 1 2 1 0 1 0 1 1 1 0 0 0 1 0 1 0 0 1 0 1 2 0 2 0 2 2 0 2 1 0 2 0 2 0 2 2 1 2 2 1 0 2 0 0 2 0 0 2 1 2 0 1 0 1 0 2 2 1 2 1 2 2 0 1 2 2 0 1 2 0 0 0 1 Amplification Peak 16 19q12 chr19:30245583-30385544(probes 1403787:1403893) chr19:30306821-30376514(probes 1403838:1403886) chr19:30248066-30398136(probes 1403788:1403895) 0.062758 0.062758 0: t<0.1; 1: 0.10.9 2 1 2 2 2 1 1 0 2 2 0 1 0 1 2 2 1 1 2 1 0 2 0 1 1 1 0 0 0 1 0 1 0 0 0 0 1 2 0 1 0 2 1 0 2 1 0 2 0 2 0 0 2 2 2 2 1 0 2 0 0 2 0 0 2 1 1 0 0 0 1 2 2 2 1 2 0 2 2 0 1 2 1 0 1 2 0 0 0 1 Amplification Peak 17 Xp11.22 chrX:53242630-53465013(probes 1512820:1512897) chrX:53430831-53464718(probes 1512889:1512896) chrX:53244541-53496978(probes 1512821:1512899) 0.089286 0.089286 0: t<0.1; 1: 0.10.9 0 1 1 1 1 1 2 1 1 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 1 1 0 1 1 0 0 1 0 1 1 0 0 1 0 1 2 2 0 1 1 1 1 0 1 1 0 1 1 1 1 0 1 0 1 0 1 0 1 0 0 1 0 1 1 1 0 1 0 0 0 1 0 0 0 2 Amplification Peak 18 Xq28 chrX:151841230-152714951(probes 1553355:1553364) chrX:151843350-152713671(probes 1553356:1553363) chrX:151843350-152774191(probes 1553356:1553387) 0.024369 0.024369 0: t<0.1; 1: 0.10.9 0 1 1 0 1 1 0 0 1 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 2 1 0 1 0 1 1 2 0 1 0 1 2 0 0 2 0 1 0 0 2 2 1 1 0 0 1 1 0 1 2 1 1 0 1 0 1 0 1 0 1 1 0 1 0 1 1 1 0 1 0 0 1 1 0 0 2 1 Deletion Peak 1 1p36.23 chr1:8403012-8925111(probes 3153:3414) chr1:8567433-8581014(probes 3220:3221) chr1:1-15922635(probes 1:6874) 8.2229e-09 8.2229e-09 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 1 0 0 1 0 1 0 0 1 1 1 0 0 1 1 1 1 0 1 0 1 1 0 1 0 0 1 1 1 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 1 0 0 Deletion Peak 2 2q22.1 chr2:101211503-143800397(probes 181052:203082) chr2:140976294-142894275(probes 201266:202537) chr2:142042799-142047443(probes 201902:201903) 0.15279 0.15327 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 Deletion Peak 3 2q37.3 chr2:239359581-243199373(probes 257764:259409) chr2:241062600-241080653(probes 258704:258715) chr2:239452099-243199373(probes 257819:259409) 0.032456 0.030954 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 Deletion Peak 4 3q13.31 chr3:116568608-116653900(probes 322756:322811) chr3:115528065-117719768(probes 321964:323594) chr3:115807651-116670892(probes 322147:322822) 2.5833e-12 2.5833e-12 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 Deletion Peak 5 4q34.3 chr4:179280062-182757119(probes 463178:464870) chr4:181521852-182082855(probes 464324:464327) chr4:170583666-191154276(probes 458406:467518) 2.7556e-14 2.2307e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 1 Deletion Peak 6 4q34.3 chr4:121980639-191154276(probes 432187:467518) chr4:182754967-182757245(probes 464870:464871) chr4:170583666-191154276(probes 458406:467518) 2.13e-13 0.10924 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 1 1 Deletion Peak 7 4q35.1 chr4:183087331-184213557(probes 465135:465475) chr4:183061233-184213557(probes 465115:465475) chr4:170583666-191154276(probes 458406:467518) 2.2312e-19 2.5522e-09 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 1 1 1 Deletion Peak 8 6p24.3 chr6:1-21599699(probes 567550:581946) chr6:7878567-7913545(probes 572584:572615) chr6:7773970-7936474(probes 572488:572627) 0.19267 0.19769 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 Deletion Peak 9 6q26 chr6:161693099-169617013(probes 659151:662934) chr6:161767520-163153207(probes 659192:659797) chr6:162035077-164048563(probes 659397:660419) 0.041315 0.039548 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 Deletion Peak 10 7q36.3 chr7:93209756-159138663(probes 710489:744534) chr7:156430315-159138663(probes 743663:744534) chr7:156314703-159138663(probes 743594:744534) 0.12261 0.12261 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 Deletion Peak 11 9p23 chr9:8885227-12687261(probes 830671:831903) chr9:8310705-10619051(probes 830171:831499) chr9:9212436-9216979(probes 830836:830837) 0.0011631 0.0022044 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 Deletion Peak 12 9p21.3 chr9:21626574-22448737(probes 838907:839382) chr9:21959052-21997722(probes 839069:839082) chr9:20635116-26796713(probes 838156:841935) 4.0214e-06 5.3085e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 1 0 1 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 Deletion Peak 13 10q23.1 chr10:1-135534747(probes 893327:973826) chr10:26724206-135206872(probes 911589:973820) chr10:26794839-26797377(probes 911634:911635) 0.19593 0.19769 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 Deletion Peak 14 11p15.5 chr11:1590306-1920254(probes 974144:974219) chr11:1681228-1920254(probes 974204:974219) chr11:1906751-1907026(probes 974212:974213) 0.014328 0.014328 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 1 1 1 0 1 0 0 0 0 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 1 0 Deletion Peak 15 11q14.1 chr11:82995735-85567968(probes 1017899:1019245) chr11:83165646-85348794(probes 1017974:1019149) chr11:84068535-84188489(probes 1018562:1018563) 0.041671 0.039548 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 1 0 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 1 1 0 Deletion Peak 16 12q14.2 chr12:56311604-113342767(probes 1079243:1113796) chr12:63538123-63544968(probes 1083505:1083510) chr12:63537413-63592577(probes 1083503:1083531) 0.20414 0.20414 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 Deletion Peak 17 13q14.2 chr13:48875329-49064807(probes 1142613:1142832) chr13:48875753-49060837(probes 1142614:1142830) chr13:48898172-49075112(probes 1142644:1142841) 0.00029485 0.00027215 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 1 0 0 1 1 1 1 1 0 1 1 1 0 1 0 0 0 1 1 0 1 0 1 1 1 0 1 0 1 0 1 0 0 1 0 0 1 1 1 1 0 1 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 0 1 0 1 1 1 0 0 1 1 0 Deletion Peak 18 14q21.2 chr14:1-76821632(probes 1180393:1211720) chr14:45392808-45547774(probes 1193145:1193199) chr14:45433678-45447186(probes 1193167:1193168) 0.19769 0.19769 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 Deletion Peak 19 15q15.1 chr15:1-60698339(probes 1229554:1249609) chr15:41976794-41986638(probes 1238529:1238530) chr15:41894576-42366888(probes 1238497:1238751) 0.079424 0.082933 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 0 Deletion Peak 20 16p13.3 chr16:5144019-7780235(probes 1275422:1276904) chr16:6066397-7771745(probes 1276054:1276892) chr16:7132184-7373048(probes 1276474:1276475) 0.011293 0.011293 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 Deletion Peak 21 16q23.1 chr16:73093053-90354753(probes 1303410:1314259) chr16:79014760-79031486(probes 1307482:1307483) chr16:79000360-79056755(probes 1307458:1307531) 0.061428 0.063521 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 Deletion Peak 22 17q11.2 chr17:29845106-29888119(probes 1325713:1325731) chr17:29858465-29872630(probes 1325724:1325725) chr17:29851236-29883766(probes 1325717:1325729) 0.049135 0.04909 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 1 1 0 Deletion Peak 23 17q21.2 chr17:36103873-43044679(probes 1328685:1331784) chr17:38272776-39896061(probes 1329557:1330349) chr17:35810504-43018065(probes 1328498:1331772) 0.0017784 0.030954 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 1 1 0 Deletion Peak 24 17q24.2 chr17:66075888-66865465(probes 1343604:1344066) chr17:66531150-66600044(probes 1343813:1343838) chr17:66225358-67805453(probes 1343626:1344632) 0.0016162 0.011293 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 1 1 0 Deletion Peak 25 20p12.1 chr20:1-22561381(probes 1417066:1431763) chr20:15252844-15274325(probes 1426031:1426032) chr20:14681864-15832281(probes 1425978:1426555) 0.030954 0.030954 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 Deletion Peak 26 22q12.1 chr22:29192671-29455701(probes 1478762:1478941) chr22:29276121-29455701(probes 1478811:1478941) chr22:27996568-29624466(probes 1478123:1479038) 2.6118e-26 2.6118e-26 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 0 0 0 1 1 1 0 0 1 1 1 1 1 0 0 0 1 0 0 1 0 0 1 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 0 1 1 1 1 0 0 1 1 1 1 1 0 1 1 0 0 Amplification Peak 1 - CN values 1q22 chr1:120523956-155582840(probes 67527:70182) chr1:155024310-155083455(probes 69961:69975) chr1:155024310-155095653(probes 69961:69978) 0.11282 0.11282 Actual Copy Change Given 1.7599 1.1312 -0.019452 -0.065447 -0.029438 -0.034825 0.66346 0.0282 -0.012576 -0.032996 1.1681 -0.29922 -0.77226 0.58668 -0.022202 0.015038 -0.27781 -0.44541 -0.025072 0.14399 -0.072675 0.0081959 -0.0010309 -0.0029091 -0.38817 -0.030677 0.081033 -0.020001 -0.052936 0.1854 -0.79068 -0.60155 0.0038854 0 0.90835 0 0.051387 0 -0.01084 1.5948 0.028261 -0.020072 0.60034 1.3762 -0.015879 -0.0091162 0.013213 0.0019418 0.029044 -0.03767 -0.00069303 -0.014641 0.10191 -0.017215 -0.037898 -0.034495 -0.25898 0.0114 -0.014366 -0.0011886 -0.47617 -0.028355 0 -0.0012116 -0.067993 0.3794 -0.0012473 1.0529 0.034955 0 -0.018803 0.086151 -0.013878 -0.06048 3.6569 -0.46972 -0.0073339 -0.01409 -0.0018014 -0.00055444 -0.52348 -0.087825 -0.54462 0.30505 0.020082 -0.0085766 0.0042518 0.068235 0.014812 0.41219 Amplification Peak 2 - CN values 4p16.3 chr4:1-2496016(probes 365372:365884) chr4:1778802-1816689(probes 365595:365601) chr4:1-2709194(probes 365372:365951) 0.038099 0.038099 Actual Copy Change Given 1.0663 -0.029301 -0.0063668 0.66069 1.741 -0.041567 0.22515 0.020763 2.2105 0.40611 -0.6523 0.26043 0.053806 -0.13497 1.3014 -0.0093305 0.26592 0.47251 2.4943 0.56045 0.92716 -0.0066432 -0.00013862 0.48802 0.52066 1.2316 -0.42276 1.8262 0.00041593 0.47838 0.027216 0.011261 -0.35874 -0.016098 -0.0011196 -0.021373 -0.12862 2.7306 1.4846 0.53011 -0.01031 1.6283 0.021183 0.48027 1.7581 0 -0.012576 0.6703 0.12314 1.7915 0 1.7293 -0.016429 -0.04644 -0.41399 1.4198 -0.034495 0.022444 -0.019589 -0.010652 0.01419 -0.060076 -0.014349 1.0683 1.7837 -0.24897 -0.0038434 -0.0077482 1.3316 0.00055459 1.4687 -0.87577 -0.055142 1.1972 0.11873 3.6569 0.51263 -0.059135 -0.077611 0 0.75108 2.7766 0.72565 -0.025483 -0.029565 0.002409 -0.00018882 -0.41729 0.031718 0.48996 Amplification Peak 3 - CN values 5p15.33 chr5:1288616-1300024(probes 467573:467575) chr5:1288662-1299328(probes 467574:467574) chr5:1-1350010(probes 467519:467590) 1.7994e-08 1.7994e-08 Actual Copy Change Given 1.9346 -0.14874 1.1401 0.73435 1.7517 0.48647 1.0157 0.64074 2.4245 0.78562 0.06208 1.4267 0.06616 0.46656 1.364 1.06 0.83667 0.47543 1.4558 0.61552 1.0203 -0.65771 -0.0061483 0.034395 0.59314 1.2506 0.0044411 1.885 0 0.58112 1.3966 0.02511 1.6764 3.1748 0.010982 1.3459 1.1065 1.467 1.5027 0.52188 0 2.9259 1.6864 0.46656 3.5056 0.01419 -0.00055444 1.249 0.052525 1.7947 -0.017169 1.8482 3.6569 -0.016567 0.83274 1.4416 0.055658 -0.0090137 1.795 1.1628 1.4103 1.8193 1.4512 1.1096 1.9101 3.6569 -0.0026322 0.017544 1.4165 0.93284 1.4933 0.22506 1.5464 1.3912 2.4685 2.8179 0.53473 1.6263 1.1908 1.5746 0.77753 3.6569 0.67252 0.070705 0.56456 1.1536 -0.0029592 0.068235 0.060335 -0.63468 Amplification Peak 4 - CN values 5q35.3 chr5:176723780-176833588(probes 565926:565974) chr5:176797344-176832557(probes 565962:565973) chr5:163240623-180915260(probes 557420:567549) 0.0022193 0.0022193 Actual Copy Change Given 0.88446 -0.013804 1.0919 0.68645 1.7706 0.48647 0.88246 -0.12925 0.74842 0.5822 -0.00027724 1.3221 0.070243 0.46136 1.341 1.0401 0.84767 0.47543 1.4331 0.58542 1.0203 0.0046156 0.0018362 -0.02151 0.59134 1.296 3.1067 1.6086 0 0.47787 0.80325 1.1589 0.033267 1.7205 0.010006 1.3459 0.043723 1.467 3.1217 0.54753 0.022085 2.9688 0.0058309 0.92209 1.7164 -0.012851 -0.00055444 1.4548 0.058081 2.759 0.003805 1.8029 0 0.74347 -0.024064 1.4316 -0.1549 0 1.795 1.1628 1.445 1.8193 1.4512 1.1056 1.8832 0.39446 -0.019177 0.021884 1.4018 0.0077783 1.4338 -0.32641 1.6084 1.4663 0.90714 2.5536 0.56739 1.65 1.1912 1.6065 2.1416 1.717 1.9718 0.11257 0.53417 1.0823 -0.0029592 2.0287 0.047268 0.55132 Amplification Peak 5 - CN values 6p21.31 chr6:36197374-36214490(probes 588308:588320) chr6:36197705-36212455(probes 588309:588319) chr6:36197705-36215692(probes 588309:588322) 0.20541 0.20541 Actual Copy Change Given 0.0054139 -0.028716 -0.0065404 1.5059 -0.068945 0.4951 0.29278 -0.072675 -0.037898 0.71283 0.018243 0.51594 -0.77558 0.47204 -0.0066499 -0.33536 -0.29402 0.0046882 -0.037898 -0.36624 1.0174 0.53661 0.00027728 -0.21963 -0.40462 -0.087712 0.071535 -0.048748 -0.0060904 -0.24922 0.049966 -0.0048461 0.053094 0.0016642 -0.001465 -0.017116 -0.0012473 -0.0036587 -0.041848 -0.029994 0.00339 -0.069424 0.0027745 0.42836 1.7241 1.2389 -0.0034627 -0.061662 -0.66114 -0.05163 0.00055459 -0.037626 0.010842 -0.021037 1.0477 1.3891 -0.2128 -0.0040964 0.85101 0 0.015866 -0.059 -0.0013858 -0.04316 -0.072274 -0.84771 -0.0071958 -1.0431 -0.039937 0.013911 -0.068931 3.6569 -0.052594 1.0597 -0.10473 1.727 0.53397 -0.0063668 -0.0033243 0.00013863 -0.54421 -0.10941 -0.57219 -0.30909 0 -0.0037395 0 0.0097276 0.024408 0.92501 Amplification Peak 6 - CN values 6q24.3 chr6:147060843-148023227(probes 649502:650104) chr6:147570724-147597369(probes 649826:649837) chr6:147570724-147605981(probes 649826:649840) 0.12727 0.12727 Actual Copy Change Given -0.0089906 -0.028071 0.018663 -0.070402 -0.068945 1.0455 -0.34481 0.9007 -0.057924 0.68012 -0.65668 0.47821 -0.77787 0.48802 -0.054646 -0.32239 -0.29402 0.0046882 -0.014228 -0.36624 0.98188 0.0056919 0.00027728 -0.0042929 -0.40307 -0.087712 -0.24569 -0.060211 -0.0060904 -0.2865 0.040751 -0.012174 -0.41849 0.0016642 0.94364 -0.017116 2.604 0.027216 -0.029296 -0.046266 -0.012378 1.4762 -0.0015243 0.43479 3.6569 0.0011093 -0.0034627 -0.08094 -0.010646 -0.048927 0.00055459 -0.052126 -0.0123 0.0019418 1.0587 -0.041974 -0.32434 -0.0040964 0.89172 0 0.015866 -0.059 -0.0013858 -0.04316 -0.067056 -0.84771 -0.00041585 0.020089 -0.060772 -0.88318 -0.068931 0.19625 -0.052594 1.0597 -0.10473 0.29915 0.53397 -0.061823 -0.0033243 0.00013863 -0.54421 -0.092095 -0.58258 -0.30909 -0.45928 -0.0037395 0 0.66014 0.02539 0.92501 Amplification Peak 7 - CN values 7p22.1 chr7:1-24087697(probes 663548:675696) chr7:5581514-5582394(probes 665395:665395) chr7:5581514-5583044(probes 665395:665398) 0.24436 0.24436 Actual Copy Change Given 0.003191 0.89609 1.4233 -0.093139 0.8645 0.457 0.33157 0.90291 -0.056173 0.94895 0.049398 -0.154 0.048404 -0.030677 1.3058 0.8089 0.25416 0.011369 1.4259 0.54189 1.0262 -0.0123 0.0049969 -0.21961 0.52363 1.2481 0.049256 0.80228 0.011679 0.43513 0.038913 0.58757 1.4172 -0.013677 0 1.3404 0.0073609 1.348 -0.043858 0.49294 0.89556 1.561 0.012795 -0.48953 1.6818 -0.015879 -0.0019399 1.3434 0.041034 0.85476 0.0020805 1.7495 0.73397 1.2818 0.86374 0.72301 0.47135 0.0033299 1.7696 0.0080567 0.010006 0.86712 0.0022193 1.12 3.3856 0.36477 0.68161 1.0591 0.69092 0.031718 1.4502 -0.35596 1.5322 1.1171 0.11682 0.93101 0.56507 1.5406 1.1436 -0.016841 0.74613 -0.10947 0.66641 -0.078544 1.3238 1.1312 -0.0042757 0.0062481 -0.049775 0.5134 Amplification Peak 8 - CN values 9q31.3 chr9:114596042-114618032(probes 877876:877900) chr9:114598961-114618020(probes 877877:877899) chr9:114584032-114627937(probes 877867:877905) 0.10071 0.10071 Actual Copy Change Given 0.010842 -0.0061249 -0.029477 3.6151 1.7599 -0.00041585 0.99551 0.10877 0.73739 0.69279 0.043865 -0.29106 0.054581 0.5562 1.3168 0.98185 0.2904 0.0092789 2.6583 -0.36408 -0.093251 0.017124 -0.0013858 0.021884 0.23086 -0.057754 0.036229 -0.03039 0 0.1255 -0.0043131 0.019503 -0.21048 -0.025893 0.91784 -0.022382 0.69503 -0.021098 0.030466 -0.058731 0.032765 1.5279 0.018103 0.47135 1.8536 0.57398 0.09275 2.2803 0.0064031 -0.039302 -0.00055444 -0.027945 1.0462 1.3778 0.2708 0.70795 -0.033348 0.020343 -0.017309 -0.0094046 0.019923 -0.033269 -0.01037 -0.019279 1.8076 0.38882 0 0.033831 -0.0099902 0.0020805 0.018051 3.6569 1.4988 -0.035312 0.1006 -0.46493 0.024408 0.013448 -0.019009 -0.011611 0.7467 1.7479 0.66937 -0.16523 0.37448 -0.025893 -0.001713 0.018523 -0.016429 0.54038 Amplification Peak 9 - CN values 12q14.1 chr12:58080141-58481453(probes 1080053:1080267) chr12:58105108-58168417(probes 1080061:1080094) chr12:57678571-60459369(probes 1079870:1081617) 0.022038 0.022038 Actual Copy Change Given -0.00041585 1.3113 1.1145 0.637 1.7722 0.49652 0.95161 0.49739 1.4527 0.99422 -0.4867 0.83589 0.060794 0.4568 1.2934 1.0966 0.27774 0.45526 1.3816 0.55797 1.011 3.6569 0 0.50307 0.58757 1.2893 0.063707 1.6228 0.00083195 0.47976 0.023145 0.57059 2.1835 1.6889 -0.0098185 1.3088 0.53239 1.425 1.5352 1.0557 0.0036678 1.5115 3.5393 -0.0081624 -0.069203 0.46724 -0.0019399 1.4316 2.3005 1.7471 0.001803 1.7296 1.488 1.2941 1.0432 1.4248 0.22901 0.0041632 1.7156 1.1394 1.1904 0.87627 1.4143 1.1137 1.8333 0.36428 2.2243 0.02511 1.3538 -0.0027707 1.4415 0.18761 1.485 1.1139 -0.40086 1.8185 0.54541 1.5958 1.1223 1.5418 0.73038 1.7601 0.65259 -0.10736 0.1024 1.1022 -0.001436 0.97935 0.0051359 0.91327 Amplification Peak 10 - CN values 14q11.2 chr14:21010467-23970250(probes 1180703:1181571) chr14:23575826-23616783(probes 1181396:1181425) chr14:21011105-23973042(probes 1180704:1181573) 0.056464 0.056464 Actual Copy Change Given -0.0018014 0.0022299 1.4018 0.70701 1.8077 -0.55437 -0.3933 -0.15579 2.2969 0.98432 0.026654 0.8349 -0.78007 0.46895 -0.026584 0.4927 -0.28358 0.0050324 1.4072 -0.35464 1.1348 0.58345 -0.00027724 0.53872 -0.39274 -0.074144 0.085365 -0.013677 0.0015255 -0.26276 0.015587 0.0012481 0.067805 -0.010646 -0.0040162 -0.014228 -0.053611 -0.0070576 -0.011872 -0.62312 0.0079778 1.6148 0.017544 -0.44609 1.864 0.15741 -0.18999 -0.040073 0.011121 -0.039981 -0.0041546 3.262 0.9926 -0.023018 -0.32124 -0.050776 0.27458 0.019363 1.6589 -0.0041546 -0.26949 1.7945 -0.00055444 -0.028349 1.8225 -0.23765 -0.0063668 0.035383 -0.029182 0.013074 -0.036538 -0.34544 -0.030228 -0.053206 0.10848 0.46707 -0.56704 1.5953 -0.010508 -0.0092666 0.74784 -0.11941 2.034 -0.1173 -0.0034433 -0.011473 0.00036572 -0.19825 0.016565 0.50471 Amplification Peak 11 - CN values 16p13.3 chr16:1-5327725(probes 1273766:1275488) chr16:2248438-2254007(probes 1274149:1274149) chr16:2248438-2266802(probes 1274149:1274152) 0.22898 0.22898 Actual Copy Change Given 0.94282 0.0047296 1.3414 0.7057 1.7628 -0.18861 -0.4044 -0.084793 0.77714 0.74511 -0.49975 0.38124 0.037548 -0.047936 2.9715 0.78834 0.32012 0.49472 1.2792 0.52818 0.6666 0.033408 -0.0042448 -0.01037 0.53415 1.4063 0.07096 1.7636 0.065656 0.57451 0.022181 0.60124 -0.34698 1.6008 -0.10105 1.3079 -0.10303 1.379 1.599 0.56241 0.033047 1.5667 0.035383 0.029184 1.9669 0.012795 -0.0054819 2.8256 0.045849 1.6904 -0.0083005 1.7963 -0.042245 0.5019 0.57576 1.383 -0.076678 0.068522 1.6442 1.1375 1.0485 0.8412 1.4217 1.1537 -0.13987 0.3701 0.66217 0.022304 1.5564 -0.77184 0.053379 0.0021408 -0.029647 0.0375 0.11242 1.0733 0.031155 0.0048425 1.0356 1.5232 0.67715 0.77827 0.66014 -0.13755 0.032127 1.0921 0.006754 0.058795 -0.054286 1.1432 Amplification Peak 12 - CN values 16q22.1 chr16:69367997-69491844(probes 1301869:1301920) chr16:69383137-69466215(probes 1301878:1301912) chr16:69246837-69850150(probes 1301822:1302087) 0.01983 0.022038 Actual Copy Change Given 0.028385 0.0047296 1.3624 2.8511 1.7628 -0.074411 0.25043 -0.084793 0.76466 0.74727 0.017824 0.37166 0.037548 0.47873 1.3051 0.78834 0.32012 0.49472 1.2948 0.51594 -0.012438 0.0351 -0.0016629 0.52171 0.53415 1.4198 0.07096 1.7033 0.065656 0.15606 0.038206 0.61552 -0.28715 1.4663 -1.0076 1.3079 -0.08844 1.379 1.5933 0.028481 0.033047 1.5502 0.035383 0.020483 1.7182 0.012795 0.011261 1.3924 0.025039 0.80202 -0.0083005 2.8437 0.95734 0.55939 0.57576 1.383 0.57791 0.02816 1.7143 1.1375 1.0496 0.8412 1.3889 1.1537 -0.11247 0.38386 3.6569 0.022304 1.4721 1.4426 0.053379 1.0931 -0.029647 -0.010508 0.11242 1.0733 0.031155 0.78794 1.0356 1.5232 0.73076 0.77827 1.8587 0.8566 1.5402 1.0921 0.006754 0.026654 -0.87166 -0.004927 Amplification Peak 13 - CN values 16q24.2 chr16:87736713-88204631(probes 1313935:1314120) chr16:87910281-88032124(probes 1314028:1314080) chr16:87910281-88037327(probes 1314028:1314083) 0.12727 0.18056 Actual Copy Change Given 3.6569 0.0047296 1.4072 -0.056846 1.7628 -0.074411 -0.30733 0.0027745 0.76466 0.74727 -0.028765 0.41195 0.09188 0.47873 1.3051 0.78834 0.32012 0.49472 1.2948 0.51594 -0.012438 0.0351 -0.0016629 0.0073609 0.53415 1.5527 0.07096 1.7033 -0.0076224 0.15606 0.038206 0.61552 -0.2429 1.4663 -1.0622 1.3079 -0.08844 1.4039 1.5933 0.028481 0.033047 1.5502 0.044857 -0.44566 3.6569 0.018663 0.011261 1.5196 0.025039 0.80202 -0.013402 1.8233 -0.0053992 0.51141 0.60304 1.4354 -0.51383 0.02816 1.7143 1.1375 1.0216 0.8412 1.4945 1.1537 -0.12772 0.38386 -0.71221 0.022304 1.8233 -0.87221 0.053379 -0.41504 -0.029647 -0.010508 0.14102 1.0733 0.031155 0.90553 1.0356 1.5232 0.73076 0.77827 0.75414 0.47426 -0.045616 1.0921 0.006754 0.059366 0.012376 0.62104 Amplification Peak 14 - CN values 17q25.3 chr17:79999378-80024315(probes 1350603:1350610) chr17:79999812-80022360(probes 1350604:1350609) chr17:79820675-80217380(probes 1350588:1350629) 0.024369 0.024369 Actual Copy Change Given -0.0029091 -0.0017908 -0.085324 -0.083374 -0.033668 0 -0.3504 0.18722 -0.022881 -0.34527 -0.042245 -0.26721 0.065656 -0.037082 -0.028771 -0.38626 0.31916 0.02564 -0.090758 -0.35122 -0.0032278 0.39595 -0.0031859 0.40744 0.58291 0.036653 -0.90495 0.065513 -0.0067813 -0.20837 -0.79825 0.0075 0.18692 -0.028373 -0.03245 0.0076392 -0.053476 -0.059135 0.035382 -0.022058 2.5841 -0.0011087 -0.58147 0.013353 -0.0027707 0.93142 0.021744 -0.087844 0.039619 1.6996 -0.018628 0.00069327 -0.017254 -0.15093 -0.085855 -0.060883 0.26357 0.047552 -0.076012 0.013632 -0.21367 -0.024579 -0.0073339 0.082802 -0.099868 -0.22662 0.69706 -1.032 0.1854 -0.84639 0.084065 2.9955 -0.021573 0 -0.047223 -0.45404 0.069956 1.6321 -0.053881 0.0015255 -0.54017 1.5516 -0.53419 -0.10788 1.1277 -0.041702 0.024217 1.0563 -0.93997 0.14197 Amplification Peak 15 - CN values 19p13.12 chr19:15293986-16628163(probes 1398850:1399568) chr19:15376833-15595142(probes 1398906:1399009) chr19:15294002-16736594(probes 1398851:1399592) 0.036259 0.036259 Actual Copy Change Given 0.027076 0.11083 1.3175 1.379 1.7316 0.50828 0.84182 -0.09136 1.4699 0.92919 -0.70046 0.87229 0.019083 0.41162 1.26 0.96824 0.3017 0.46875 1.2029 0.49251 0.06669 0.85601 -0.005261 0.75662 0.50672 0.7012 0.019643 0.061508 -0.006505 0.26891 0.013213 0.54294 0.0086135 0.023987 0.71415 0.030169 0.30713 1.24 0.090881 1.618 0.029527 1.565 3.122 -0.41047 1.8525 0.38551 0.022725 1.4077 0.045849 1.5761 -0.006505 1.7061 3.6569 0.4777 1.1093 1.3711 0.27269 0.067661 1.4899 0.020623 -0.035176 1.7521 0.011277 0.078908 1.6917 0.3499 3.6569 0.078871 0.17031 0.016705 0.11297 -0.33682 2.8802 1.213 0.25654 1.0896 0.58739 1.622 0.98204 0.017404 0.65719 1.5868 1.8063 -0.10618 0.77486 0.96061 0.021132 0.059937 -0.094592 0.7052 Amplification Peak 16 - CN values 19q12 chr19:30245583-30385544(probes 1403787:1403893) chr19:30306821-30376514(probes 1403838:1403886) chr19:30248066-30398136(probes 1403788:1403895) 0.062758 0.062758 Actual Copy Change Given 1.2301 0.11083 1.3175 3.6569 1.7316 0.50828 0.84182 -0.09136 1.4699 0.92919 -0.066788 0.87229 0.019083 0.41162 1.26 0.96824 0.3017 0.46875 1.2029 0.49251 0.06669 1.084 -0.005261 0.83079 0.50672 0.7012 0.019643 0.061508 -0.006505 0.26891 0.013213 0.54294 0.0086135 -0.020915 -0.083333 -0.037221 0.30713 1.24 0.090881 0.58309 0.029527 1.565 0.55602 -0.41839 1.8525 0.49874 0.022725 1.4077 -0.65034 1.5761 -0.006505 -0.024251 3.6569 3.0326 1.1093 1.3711 0.27269 0.067661 1.4899 0.020623 0.031586 1.7521 0.011277 0.078908 1.6917 0.3499 0.6246 0.042874 0.090727 0.016705 0.11297 3.6569 1.5248 1.213 0.26561 1.0896 0.010424 1.622 0.98204 0.017404 0.65719 1.5868 0.63189 -0.10618 0.77486 0.96061 -0.068845 0.059937 -0.094592 0.7052 Amplification Peak 17 - CN values Xp11.22 chrX:53242630-53465013(probes 1512820:1512897) chrX:53430831-53464718(probes 1512889:1512896) chrX:53244541-53496978(probes 1512821:1512899) 0.089286 0.089286 Actual Copy Change Given -0.016332 0.15354 0.25605 0.71114 0.51317 0.11169 1.7415 0.88846 0.37002 0.13761 -0.17514 0.044574 -0.36215 0.11404 0.43445 0.068388 0 -0.071368 0.49381 0.0065262 0.31193 -0.036265 0 0.053379 0 0.41346 -0.23557 0.35441 -0.011198 0 -0.36771 -0.030677 0.67159 0.23457 0.25558 0.29247 -0.070804 0.29676 0.34471 0.013492 -0.13388 0.63975 -0.14657 0.1676 0.60738 -0.05725 -0.0030475 0.40811 -0.007472 0.44641 3.5937 1.5586 0.052099 0.22653 0.1646 0.36691 0.55089 -0.035176 0.41479 0.19938 -0.057385 0.43986 0.26702 0.32935 0.61681 -0.011198 0.15965 -0.17879 0.37775 -0.12733 0.27143 -0.15459 0.4857 0.0075 -0.14554 0.15188 -0.0063715 0.42654 0.22916 0.28137 0 0.4575 0 0.045849 -0.0088333 0.20901 -0.00032743 -0.58814 -0.33376 1.491 Amplification Peak 18 - CN values Xq28 chrX:151841230-152714951(probes 1553355:1553364) chrX:151843350-152713671(probes 1553356:1553363) chrX:151843350-152774191(probes 1553356:1553387) 0.024369 0.024369 Actual Copy Change Given -0.015879 0.38834 0.25605 -0.061286 0.51317 0.10424 -0.049154 -0.19816 0.31464 0.093185 -0.17514 0.074696 -0.36318 0.11404 0.41864 0.066239 0 -0.043262 0.47169 0.032704 0.31193 -0.036265 0 -0.0015243 0 0.35911 -0.23557 0.3395 -0.011198 0.026233 -0.35988 -0.030677 1.4519 0.23457 -0.87244 0.29247 -0.070804 0.29676 0.34471 1.2691 -0.13388 0.61244 -0.14771 0.67901 1.0538 -0.05725 -0.0030475 2.8686 -0.007472 0.44641 -0.050235 -0.14657 1.2063 1.4945 0.15967 0.36691 -0.29438 -0.035176 0.40577 0.19938 -0.057385 0.42652 2.1759 0.32935 0.62989 -0.026441 0.15965 -0.17879 0.37775 -0.10079 0.27143 -0.1499 0.4857 0.82294 -0.14554 0.15188 -0.015594 0.42654 0.22916 0.28137 0 0.48887 0.008892 0.025671 0.55764 0.22978 -0.00032743 0.047836 1.81 0.71498 Deletion Peak 1 - CN values 1p36.23 chr1:8403012-8925111(probes 3153:3414) chr1:8567433-8581014(probes 3220:3221) chr1:1-15922635(probes 1:6874) 8.2229e-09 8.2229e-09 Actual Copy Change Given 0.03031 -0.73993 -0.065381 -0.92428 -0.029438 -0.01037 -0.39753 -0.0071958 -0.85694 0 0.63499 -0.2435 -0.77226 -0.55397 -0.028195 -0.058221 -0.23655 -0.42082 -0.12355 -0.35533 -0.072675 -0.55995 0.00097064 -0.59857 -0.38817 0.070673 -0.85837 0.043015 -0.052936 -0.60245 -0.79068 -0.58058 -0.33387 -0.030813 -0.045635 0 -0.6097 -0.074602 0.059952 -0.60989 -1.2929 -0.020072 -0.57891 0.43496 -0.033814 -0.03095 0.013213 -0.06865 0.029044 -0.03767 -0.00069303 -0.014641 -0.44878 -0.0091286 -0.10093 -0.062421 -0.27715 -0.84363 -0.014366 0.00041593 -0.47617 -0.028355 -0.0019685 -0.0012116 -0.067993 -1.2929 -0.0012473 0.040892 0.1095 -0.84739 0.03214 -1.2929 -0.013878 0.031436 0.43378 -0.44037 -0.56276 -0.039711 -0.0018014 -0.00055444 -0.52348 -0.16829 -0.54462 0.22052 -0.99659 -0.0085766 0.012326 -0.81236 -0.056442 0.53352 Deletion Peak 2 - CN values 2q22.1 chr2:101211503-143800397(probes 181052:203082) chr2:140976294-142894275(probes 201266:202537) chr2:142042799-142047443(probes 201902:201903) 0.15279 0.15327 Actual Copy Change Given 0.0048579 0.010714 0.0090312 0.70945 -0.0028992 0.47976 0.29851 0.095508 -0.0089906 -0.32826 0 -0.29088 -0.73941 0.46878 0 0 -0.26829 -0.076175 0.024969 -0.31756 -0.10625 -0.037218 0.0034687 0.065226 -0.36289 -0.028628 -0.3622 -0.019314 0.12216 -0.24856 -0.75642 -0.56196 -0.38828 0.042331 0.0031941 0.0091705 0.022164 0.026795 0.0026508 0.54683 -0.0057541 0 -0.012989 -0.39953 -0.03096 0.48492 -0.0011859 -0.025209 -0.0012473 -0.41491 0.00069327 0.07861 1.0415 0.019083 0 0 0 -0.0095426 0.031859 0.018803 0.0045106 0 0.023005 0 0 0.32141 0.62017 -0.013127 -0.0033243 0.016006 -0.060108 0.16617 0 -0.048416 0.031859 -0.015879 -0.54354 0 0.024408 0.015308 -0.48575 -0.031596 -0.51445 -0.043668 0.4998 0.019783 0.0022442 -0.8131 0.015587 -0.0098053 Deletion Peak 3 - CN values 2q37.3 chr2:239359581-243199373(probes 257764:259409) chr2:241062600-241080653(probes 258704:258715) chr2:239452099-243199373(probes 257819:259409) 0.032456 0.030954 Actual Copy Change Given 0.0098669 0.010714 0.0090312 -0.96373 -0.0028992 0.46695 0.26734 1.1368 -0.84082 -0.30663 0 -0.22613 -0.73941 0.46878 0 -0.022 -0.26829 -0.076175 0.024969 -0.31611 -0.10625 -0.026167 0.0034687 0.080601 -0.35624 -0.043059 -0.3622 0.00097064 0.14176 -0.24885 -0.75642 -0.56402 0.46673 0.002549 -1.0086 0.0091705 0.022164 -0.01147 0.0026508 0.55354 -0.0059843 0 0.010285 0.42974 -0.032723 0.48492 -0.0011859 -0.015741 -0.0012473 0.010379 0.00069327 0.07861 0.99239 0.019083 -0.045906 0 -0.61489 -0.0095426 0.031859 0.018803 0.0045106 0 0.023005 0.060402 -0.94474 -0.66836 0.657 -0.0094046 0.17588 0.016006 0.010146 0.13279 0.01273 -0.032314 0.031859 0.061508 -0.54354 0.021744 0.026641 0.015308 -0.47965 -0.020015 -0.51445 -0.043668 0.4998 0.019783 0.0022442 -0.8131 0.015587 -0.0098053 Deletion Peak 4 - CN values 3q13.31 chr3:116568608-116653900(probes 322756:322811) chr3:115528065-117719768(probes 321964:323594) chr3:115807651-116670892(probes 322147:322822) 2.5833e-12 2.5833e-12 Actual Copy Change Given -0.0013858 1.2432 0 0.63025 -0.057241 -0.55747 -0.31143 -0.17911 -0.039122 -0.36704 0.041741 -0.14219 0.062292 -0.010335 -0.043473 -0.3058 0.26844 0 -0.01409 -1.2929 -0.14439 -0.00047546 0.00041593 -0.52187 0.57911 0.61426 0 -0.050641 -0.0024938 0.051814 -0.79634 -0.6041 -0.51794 0.014749 0.019223 -0.0099565 0.024829 -0.0016629 -0.030662 0.52241 -0.021999 -1.2929 -1.2227 0.43106 1.7082 -0.54118 0.0015255 -1.2929 0 -0.034675 0.0033299 -0.044009 -0.016429 0 0.011539 -0.027398 0.26326 -0.015329 -0.0048461 0.0034687 -0.41936 0.87089 0.0020094 -0.031017 -0.037326 -0.24241 -0.003441 -1.0313 -0.053881 0.0033299 -0.095856 -0.32409 1.5134 1.0455 -0.41794 -0.50214 -0.044326 -0.032178 0.0038854 0.0044411 -0.53287 0.24948 0.6629 0.11404 -0.4566 -0.01037 -0.00074321 -0.0020784 -0.85424 -0.059886 Deletion Peak 5 - CN values 4q34.3 chr4:179280062-182757119(probes 463178:464870) chr4:181521852-182082855(probes 464324:464327) chr4:170583666-191154276(probes 458406:467518) 2.7556e-14 2.2307e-06 Actual Copy Change Given -0.0078863 -0.00012803 0.018943 -0.15528 1.687 -0.041567 -1.0227 -0.070001 0.65995 0.23737 -0.67518 0.24684 0.049151 -0.0023426 -0.073883 0.011271 0.26572 0.44787 -0.041829 -1.2925 0.92716 -0.58363 -0.00013862 -0.57041 0.46047 1.2032 -0.3112 1.5771 0.00041593 -0.75435 0.027216 -0.012162 -0.92592 0.027497 0 -0.021373 -0.50836 0.0070826 1.4846 -0.053206 -0.82175 -0.88364 -1.2929 -0.50722 1.545 0 -0.012576 -0.71444 0.0090312 0.19918 0 -0.076145 -0.064445 -0.74534 0.73132 0.72112 -0.70289 -0.019452 0.0092239 0.0024969 0.01419 -0.060076 0.010982 1.0683 1.9196 -0.87829 0.024548 -0.93828 1.2875 0.036229 1.3003 -0.30093 -0.051108 0.98535 0.11873 0.93589 0.51263 -0.03395 0.017396 0 -0.49986 0.87207 0.64414 0.013772 -0.4598 0.015587 -0.0080744 -0.45125 -0.85337 -0.63411 Deletion Peak 6 - CN values 4q34.3 chr4:121980639-191154276(probes 432187:467518) chr4:182754967-182757245(probes 464870:464871) chr4:170583666-191154276(probes 458406:467518) 2.13e-13 0.10924 Actual Copy Change Given -0.0078863 -0.00012803 0.018943 -0.12421 1.7412 -0.048883 -1.0308 -0.070001 -0.11142 -0.44113 -0.67518 0.1613 0.063366 0.011539 -0.073883 -0.014493 0.26572 0.44787 -0.041829 -0.84651 0.92716 -0.58363 -0.00013862 -0.11848 -0.33722 1.2032 -1.2929 1.5771 0.00041593 -0.71826 0.013772 0.01433 -0.91032 0.027497 0 -0.021373 -0.92867 0.0070826 1.4846 -1.2929 -0.0083787 -0.18458 -0.078144 -0.50722 1.5858 0 -0.0041546 0.68273 0.0090312 1.7078 0 -0.076145 -0.57249 -0.04048 0.73132 -0.068261 -0.70289 -0.019452 0.0092239 0.0024969 0.01419 -0.060076 0.010982 1.0683 -0.12525 -1.2929 0.024548 -0.93828 1.3938 0.036229 1.3003 -0.30093 -0.051108 0.98535 0.11873 -0.073476 -0.12901 -0.21676 0.017396 0 -0.54118 0.87207 0.59134 0.013772 -0.085704 0.015587 -0.0080744 -0.45125 -0.85337 -0.63231 Deletion Peak 7 - CN values 4q35.1 chr4:183087331-184213557(probes 465135:465475) chr4:183061233-184213557(probes 465115:465475) chr4:170583666-191154276(probes 458406:467518) 2.2312e-19 2.5522e-09 Actual Copy Change Given -0.0078863 -0.00012803 0.018943 -1.0112 -0.092468 -0.048883 -0.35601 -0.070001 -0.91875 0.0351 -0.67518 -0.65594 0.063366 -0.50888 -0.073883 -0.014493 0.26572 0.44787 -0.041829 -0.84651 0.92716 -0.58363 -0.00013862 -0.11848 0.49234 1.2032 -1.2929 1.5771 0.00041593 -0.23129 0.044574 -1.2926 -1.2929 0.027497 0 -0.021373 -0.57338 0.0070826 1.4846 -1.2929 -0.0083787 -0.18873 0.033549 -0.50722 1.5858 0 -0.0041546 0.68273 0.0090312 1.7078 0 -1.2929 -0.022469 -0.04048 0.73132 -0.068261 -0.70289 -0.019452 0.0092239 0.0024969 0.01419 -0.060076 0.010982 1.0683 -0.12525 -0.25104 0.024548 -1.0551 1.3938 0.036229 1.3003 -0.30093 -0.051108 0.98535 0.11873 -0.61853 -0.12901 1.6721 0.017396 0 -0.54118 0.87207 0.59134 0.013772 -0.63537 0.015587 -0.0080744 -0.45125 -0.85337 -0.63231 Deletion Peak 8 - CN values 6p24.3 chr6:1-21599699(probes 567550:581946) chr6:7878567-7913545(probes 572584:572615) chr6:7773970-7936474(probes 572488:572627) 0.19267 0.19769 Actual Copy Change Given 0.0054139 -0.028716 0.0055529 0.928 -0.052252 0.4951 0.30521 -0.49701 -0.037898 0.71283 0.018243 0.51594 -0.77558 0.47204 -0.035455 -0.33536 -0.29402 0.0046882 -0.052289 -0.36624 1.0174 0.53661 0.00027728 -0.76851 -0.40462 -0.087712 0.071535 -0.048748 -0.0060904 -0.24922 0.049966 -0.0048461 0.049824 0.0016642 -1.0081 -0.017116 -0.0064143 -0.025831 -0.02834 -0.029994 0.00339 -0.069424 0.0030522 0.42836 1.7241 -0.0030475 0.012237 -0.061662 -0.66114 -0.05163 0.00055459 -0.037626 0.010842 -0.038464 1.0477 -0.045635 -0.2128 0.012376 0.85101 0 0.010842 -0.059 -0.0013858 -0.04316 -0.072274 -0.84771 -0.0071958 -1.0493 -0.039937 0.013911 -0.068931 -0.33924 -0.052594 1.0597 -0.10473 1.6734 0.53397 -0.030813 -0.0033243 0.00013863 -0.54421 -0.10941 -0.56147 -0.11495 -0.50431 -0.0037395 0.0014753 0.0097276 0.024408 0.92501 Deletion Peak 9 - CN values 6q26 chr6:161693099-169617013(probes 659151:662934) chr6:161767520-163153207(probes 659192:659797) chr6:162035077-164048563(probes 659397:660419) 0.041315 0.039548 Actual Copy Change Given -0.0089906 -0.028071 0.0029133 -0.070402 -0.068945 1.0455 -0.34481 0.2858 -0.057924 0.68012 -0.65668 0.47821 -0.77787 0.48802 -0.054022 -0.32239 -0.29402 0.0046882 -0.044549 -0.37606 0.98188 1.0663 0.00027728 -0.019314 -0.40307 -0.087712 -0.24569 -0.060211 -0.0060904 -0.2865 0.040751 -0.012174 -0.39827 -0.050292 -1.0345 -0.017116 -1.1738 -0.0087146 -0.038563 -0.046266 -0.012378 1.4762 -0.0015243 0.46127 -0.18408 0.0011093 -0.0034627 -0.08094 -0.010646 -0.048927 0.00055459 -0.052126 -0.0123 -0.041024 1.0587 -0.061017 -0.32434 -0.0040964 0.89172 0 0.015866 -0.067993 -0.0013858 -0.04316 -0.067056 -0.84771 -0.011138 1.0193 -0.031905 -0.88318 -0.068931 0.19625 -0.052594 1.0597 -0.10473 0.29915 0.53397 -0.052666 -0.0033243 -0.030267 -0.54421 -0.092095 -0.58258 -0.30909 -0.93584 -0.0037395 0 0.66014 0.02539 0.92501 Deletion Peak 10 - CN values 7q36.3 chr7:93209756-159138663(probes 710489:744534) chr7:156430315-159138663(probes 743663:744534) chr7:156314703-159138663(probes 743594:744534) 0.12261 0.12261 Actual Copy Change Given 0.011539 0.98909 1.4455 -0.95544 2.6768 0.33044 0.32318 0.69167 0.73038 0.78085 -0.70055 -0.1259 0.048404 -0.53266 1.3177 0.8089 0.27048 -0.0047519 1.4259 0.54189 1.0262 -0.6041 -0.0012473 -0.051586 0.52363 1.3157 0.049256 0.83019 0.010779 0.42032 0.034395 0.57755 0.14043 -0.013677 -0.014316 1.3404 -0.059459 1.348 -0.037883 -0.041159 -0.9342 1.494 0.0011093 0.58005 1.6706 0.00097064 -0.0019399 1.3561 0 0.85476 0.0020805 1.7495 0.050961 0.56578 0.83923 0.69959 -0.81729 0.0033299 1.7701 -0.0012473 -0.0008316 0.86712 -0.012024 1.0935 1.8928 0.36379 -0.67756 0.013903 0.74366 -0.0030801 1.4502 -0.31571 1.5322 1.1089 0.096154 0.92329 0.54735 0.78929 1.1436 -0.016841 0.75605 -0.10882 0.68161 -0.016017 -0.0089713 1.1312 0.0024466 0.0020805 0.023005 -0.59357 Deletion Peak 11 - CN values 9p23 chr9:8885227-12687261(probes 830671:831903) chr9:8310705-10619051(probes 830171:831499) chr9:9212436-9216979(probes 830836:830837) 0.0011631 0.0022044 Actual Copy Change Given -0.029994 -0.0061249 -0.0041546 1.4049 1.7979 -0.00041585 -0.28644 -0.23912 -0.86069 0.14132 0.043865 -0.29804 0.07254 0 1.2787 0.98185 0.2904 -0.0090943 -0.03095 -0.3687 -0.093251 -0.56406 -0.0013858 -0.54239 0.27679 -0.057754 -0.84547 -0.016567 0 -0.29011 0.013074 0.021323 -0.46504 -0.026183 -0.98597 -0.022382 -0.54844 -0.0036011 -0.02915 -0.61008 -0.04896 1.5279 0.012289 -0.50888 1.7443 -0.38425 0.09275 0.77483 -0.017666 -0.039302 -0.00055444 -0.027945 0.020903 1.3778 -1.0396 0.70795 -0.55236 -0.88287 -0.0080244 -0.0094046 0.019923 -0.033269 -0.019957 -0.019279 -0.063435 -0.83147 0 -1.0301 -0.030129 -0.86184 -0.043195 0.064859 1.4988 -0.035312 0.1006 -0.50269 -0.008579 -0.020824 -0.0029091 -0.011611 0.7467 1.7766 0.66937 -0.16523 -0.0063474 0.0072217 -0.001713 0.018523 0.020343 -0.035664 Deletion Peak 12 - CN values 9p21.3 chr9:21626574-22448737(probes 838907:839382) chr9:21959052-21997722(probes 839069:839082) chr9:20635116-26796713(probes 838156:841935) 4.0214e-06 5.3085e-05 Actual Copy Change Given -0.029994 -0.0061249 -0.0084385 1.3357 1.7239 -0.00041585 -0.28644 -0.23398 -0.83664 0.57701 0.043865 -0.29804 0.07254 0 1.2787 0.98185 0.2904 -0.0090943 -0.03095 -0.3687 -0.093251 -0.55987 -0.0013858 -0.54239 0.27679 -0.057754 -0.84547 -0.89189 0 -0.26865 0 0.010703 -0.46504 -0.026183 -0.98597 -0.022382 -0.5348 -0.021098 -0.02915 -1.2235 -0.9087 1.5279 -0.65099 -0.46982 1.7303 -0.38425 0.09275 1.7097 -0.017666 -0.039302 -0.00055444 -0.027945 0.039054 1.3778 -1.2929 0.70795 -0.9975 -0.85583 -0.0080244 -0.0094046 0.019923 -0.033269 -0.01037 -0.019279 -0.063435 -1.2929 0 -1.0301 -0.030129 -1.2929 -0.043195 0.10927 1.4988 -0.035312 0.1006 -0.50269 -0.013834 -0.020824 -0.0029091 -0.011611 0.7467 1.7479 0.66937 -0.16523 -0.0063474 0.0072217 -0.001713 0.018523 0.020343 -0.035664 Deletion Peak 13 - CN values 10q23.1 chr10:1-135534747(probes 893327:973826) chr10:26724206-135206872(probes 911589:973820) chr10:26794839-26797377(probes 911634:911635) 0.19593 0.19769 Actual Copy Change Given 0.023005 1.3429 -0.022058 -0.086651 0.88207 -0.021921 0.94936 -0.042381 0.71377 -0.34249 0.0041632 0.3033 0 -0.018216 0.66086 -0.33951 -0.28406 0.015835 -0.036674 0.42486 -0.094856 0.5546 5.3911e-05 0.5345 -0.39252 -0.062918 -0.3781 -0.024798 -0.00069303 -0.25406 0.028903 0.58417 -0.35578 -0.03634 0.0072217 -0.021373 0.53116 -0.023018 -0.024236 0.017124 -0.013144 1.5259 0 -0.018078 -0.062898 0.57487 0.010564 -0.032178 -0.029857 -0.042425 -0.0051227 -0.03245 0.017124 0.66438 -0.03037 -0.036129 -0.31272 0.0084743 -0.018628 -0.010784 -0.27858 0.88006 -0.015329 -0.028046 1.7921 0.37347 0.66124 0.012051 -0.015079 0.011121 -0.017941 0.18547 1.519 -0.050506 0.088548 0 0 0.78833 -0.017254 -0.016979 0.7429 0.76015 0.67734 0.2664 0.45941 -0.011749 0.0017799 0.022304 0.036088 -0.60337 Deletion Peak 14 - CN values 11p15.5 chr11:1590306-1920254(probes 974144:974219) chr11:1681228-1920254(probes 974204:974219) chr11:1906751-1907026(probes 974212:974213) 0.014328 0.014328 Actual Copy Change Given 1.147 -0.004559 -0.044822 -0.10355 -0.047521 -0.028355 0.31081 0.42772 -0.038306 -0.33871 -0.020961 -0.30051 -0.78007 -0.032322 -0.026899 -0.68423 -0.28774 -0.4545 -0.060325 -0.36578 -0.096332 0.0079175 0.00027728 0 -0.39308 -0.06048 0.090285 -0.04211 -0.0067813 -0.25055 -0.79068 -0.59614 -0.82976 -0.035993 0.0051359 -0.029311 -0.011198 -0.02384 0.055081 -0.044957 -0.92767 -0.059748 -0.59166 -0.46483 -0.031905 -0.072808 0 1.4155 0.0063871 -0.040524 -0.00097017 -1.2131 0.06208 0.60377 -0.040209 -0.04726 0.23814 -0.029721 -0.025209 -0.019177 -0.30216 -0.048207 -0.024524 -0.019554 -0.068378 -0.82773 0.66106 -0.011611 -0.0123 0.0083351 -0.017749 0.18547 -0.028964 -0.04211 0 -0.48218 -0.57229 -0.029311 -0.01354 -0.024251 -0.52164 -0.10138 -0.55066 0.44586 0.43246 -0.023429 0.0024466 -0.84098 -0.92421 -0.025289 Deletion Peak 15 - CN values 11q14.1 chr11:82995735-85567968(probes 1017899:1019245) chr11:83165646-85348794(probes 1017974:1019149) chr11:84068535-84188489(probes 1018562:1018563) 0.041671 0.039548 Actual Copy Change Given 0.0055529 -0.004559 -0.048154 -0.091816 -0.047521 -0.028355 0.37002 -0.14824 -0.042245 -0.34922 -0.020961 -0.30051 -0.77888 0.46229 -0.044964 -0.68423 -0.28774 -0.4545 -0.060325 -0.24557 -0.096332 0.0079175 0.00027728 0 -0.39308 -0.06048 -0.23618 -0.023703 0.0061418 -0.28874 -0.79068 0.0011093 0 -0.020412 -0.019726 -0.029311 0.0075 -0.02384 -0.032229 0.53415 -0.92767 -0.056516 -0.60854 -0.45843 -0.062898 -0.0019399 0 -0.050641 -0.012215 -0.040524 -0.00097017 -0.039258 -0.018817 -0.044023 -0.040209 -0.042924 -0.18391 -0.029721 -0.026304 -0.019177 -0.19325 -0.048207 -0.027472 -0.025858 -0.060614 -0.83863 0.65811 -0.011611 -0.0123 -0.0036011 -0.012851 0.15553 -0.028964 -0.04211 0 -0.48218 -0.57229 -0.0087381 -0.01354 -0.024251 -0.52882 -0.094604 -0.54138 0.78312 -0.036816 -0.014913 0.0024466 -0.84098 -0.84819 -0.044766 Deletion Peak 16 - CN values 12q14.2 chr12:56311604-113342767(probes 1079243:1113796) chr12:63538123-63544968(probes 1083505:1083510) chr12:63537413-63592577(probes 1083503:1083531) 0.20414 0.20414 Actual Copy Change Given -0.00041585 1.3113 1.1145 2.0903 1.7492 0.49652 0.95161 0.49739 1.4527 1.156 -0.4867 0.83589 0.060794 0.4568 1.2934 1.0966 0.27774 0.45526 1.3816 0.55797 1.011 0.59332 0 0.50307 0.58757 1.2893 0.063707 1.6005 0.00083195 0.47976 0.023145 0.57059 2.1835 1.6889 -0.0098185 1.3088 0.53239 1.425 1.5191 1.0557 0.0036678 1.5115 -1.2727 -0.0081624 -0.069203 0.46724 -0.0019399 1.4316 -0.66356 1.7471 0.001803 1.7296 1.5313 1.2941 1.0432 1.4117 0.22901 0.0041632 1.7337 1.1394 1.1904 0.87627 1.4143 1.1137 1.8333 0.36428 0.64304 0.02511 1.3538 -0.0027707 1.4415 0.18761 1.485 1.1139 -0.98068 1.8185 0.54541 1.5958 1.1223 1.5418 0.73038 1.7601 0.65259 -0.10736 0.11318 1.1022 -0.001436 -0.00069303 0.0051359 0.91327 Deletion Peak 17 - CN values 13q14.2 chr13:48875329-49064807(probes 1142613:1142832) chr13:48875753-49060837(probes 1142614:1142830) chr13:48898172-49075112(probes 1142644:1142841) 0.00029485 0.00027215 Actual Copy Change Given -0.00041585 0.30411 -0.054825 -0.12491 -0.067984 -0.037626 -0.99962 -0.074411 -0.059799 -0.35631 -1.2929 -0.40566 -0.72765 -0.93791 -0.049701 -0.10367 -0.28465 -0.92861 -0.023977 -0.36601 0.99613 0.0019418 -0.00069303 -0.5293 -0.56724 -0.094988 -0.8583 -0.081738 -0.13674 -0.27523 -0.79009 -0.005814 -0.5243 -0.0091286 -0.98033 -0.023429 -0.55361 -0.0029091 -0.044673 -0.65165 -0.011714 1.4541 -0.5897 -0.47997 -1.2929 -0.53348 -0.0087146 -0.77575 -0.017116 -0.89284 0.0019418 1.6198 -0.010028 0.017684 -1.0244 -0.80741 -0.52278 -0.0099565 -0.00013862 -0.0071958 -0.91334 -0.031759 -0.0048461 -0.052767 -0.059552 0.36461 -0.6604 0.035524 -0.05725 -0.0033243 -0.081354 -0.30599 -0.033195 -0.65417 -0.41014 0.42957 -0.59285 -0.04048 0 -0.0019399 -1.1233 -0.088521 -0.56216 -0.12211 -0.54309 0 -0.0048962 -0.85321 -0.85223 -0.043681 Deletion Peak 18 - CN values 14q21.2 chr14:1-76821632(probes 1180393:1211720) chr14:45392808-45547774(probes 1193145:1193199) chr14:45433678-45447186(probes 1193167:1193168) 0.19769 0.19769 Actual Copy Change Given -0.0018014 0.0022299 1.4728 0.5944 1.7955 -0.55437 -1.0423 -0.16294 -0.023292 0.40424 0.026654 -0.14477 -0.78007 0.46895 -0.026584 0.4927 -0.28358 0.0050324 1.4162 -0.35464 1.0243 0.022585 -0.00027724 0.53872 -0.39274 -0.074144 0.085365 -0.047584 0.0015255 -0.68141 0.015587 0.0012481 0.42755 0.014888 -0.0040162 -0.014228 0 -0.0070576 -0.011872 -0.017529 0.0079778 1.5127 0.015308 -0.46067 -0.15426 0.15741 -0.18999 -0.040073 0.011121 -0.039981 -0.0041546 -0.052385 0.9926 -0.023018 -0.32124 -0.050776 0.27458 0.019363 1.7516 -0.0041546 -0.26949 1.8254 -0.00055444 -0.028349 1.8248 -0.23922 -0.0063668 0.020063 -0.018091 0.013632 -0.044686 0.0947 -0.030228 -0.044822 0.10848 0.46707 -0.56704 1.6366 -0.010508 -0.0092666 -0.70334 -0.10238 0.6642 -0.1173 -0.0034433 -0.011473 0.00036572 -0.19825 0.016565 -0.033076 Deletion Peak 19 - CN values 15q15.1 chr15:1-60698339(probes 1229554:1249609) chr15:41976794-41986638(probes 1238529:1238530) chr15:41894576-42366888(probes 1238497:1238751) 0.079424 0.082933 Actual Copy Change Given 0.023426 -0.012116 -0.041295 -0.083465 -0.033395 0.028763 -0.31669 -0.019863 -0.00097017 0.98804 -0.00069303 0.3025 -0.77073 -0.024798 -0.033548 -0.031622 -0.25031 -0.4352 -0.051451 0.54577 1.027 -0.56406 -0.0012473 -0.53175 -0.38201 0 0.080889 -0.0024938 -0.0027707 -0.22773 0.034113 -0.58863 0.9138 -0.020961 -0.0011087 -0.0081624 -0.14849 -0.023292 0.0072369 -0.61882 0.032483 -0.015466 -1.2312 -0.007472 -0.04048 -0.53307 0.026795 -0.0052567 -0.13549 0.85515 -0.00055444 1.8111 -0.48953 -0.067056 -0.027808 -0.028218 -0.3953 0.032704 -0.030677 -0.0053992 -0.90312 -0.027261 -0.014503 0.0068402 1.773 -0.22256 -0.65994 0.039902 0.029044 0.020903 0.045991 0.058571 -0.01663 -0.015721 0.11785 0.51403 0.02806 0.8479 -0.018216 -0.015466 -0.52583 -0.12071 -0.55853 -0.64621 -0.54268 -0.01106 0.0066149 -0.82798 -0.015054 -0.022961 Deletion Peak 20 - CN values 16p13.3 chr16:5144019-7780235(probes 1275422:1276904) chr16:6066397-7771745(probes 1276054:1276892) chr16:7132184-7373048(probes 1276474:1276475) 0.011293 0.011293 Actual Copy Change Given 0.035383 0.0047296 1.3414 0.73739 1.7628 -0.73284 -0.30932 -0.084793 0.77714 0.74511 -0.49975 0.37166 0.037548 -0.047936 1.2836 0.78834 0.32012 0.49472 1.2792 0.50134 0.6666 0.033408 -0.0042448 -0.01037 0.53415 1.4063 0.07096 1.7636 0.065656 0.56028 0.022181 0.60124 -0.34698 1.6008 -0.013815 1.3079 -0.02384 1.379 1.599 0.56241 0.033047 1.5667 0.035383 0.029184 1.8047 0.012795 0.011261 1.4226 0.045849 1.6904 -0.0083005 1.7963 0.09217 0.5019 0.57576 1.383 -0.076678 0.02816 1.6442 1.1375 1.0485 0.8412 1.3889 1.1537 -0.13987 0.3701 0.66217 0.022304 1.5564 -0.81483 0.053379 0.52318 -0.029647 0.0375 0.11242 1.0733 0.031155 0.0048425 1.0356 1.5232 -0.55687 0.77827 0.66014 -0.13755 0.067386 1.0921 0.006754 0.063509 -0.054286 1.1432 Deletion Peak 21 - CN values 16q23.1 chr16:73093053-90354753(probes 1303410:1314259) chr16:79014760-79031486(probes 1307482:1307483) chr16:79000360-79056755(probes 1307458:1307531) 0.061428 0.063521 Actual Copy Change Given 0.028385 0.0047296 1.3952 -0.056846 1.7628 -0.074411 -0.30733 -0.084793 0.76466 0.74727 -0.68624 0.41195 0.037548 0.47873 1.3051 0.78834 0.32012 0.49472 1.2948 0.51594 -0.012438 0.0351 -0.0016629 0.0073609 0.53415 1.4198 0.07096 1.7033 0.065656 0.15606 0.038206 0.61552 0.21637 1.4663 -1.0076 1.3079 -0.08844 -0.080275 1.5933 0.028481 0.033047 1.5502 0.044857 -0.44566 1.7705 0.018663 0.011261 0.61661 0.025039 0.80202 -0.013402 1.8233 -0.0053992 0.5252 -0.086386 1.4354 -0.44685 0.02816 1.7143 1.1375 1.0216 0.8412 1.3889 1.1537 -0.12772 0.38386 -1.2929 0.022304 1.4721 -0.87221 0.053379 -0.44465 -0.029647 -0.010508 -0.41058 1.0733 0.031155 0.85047 1.0356 1.5232 0.73076 0.77827 0.69551 -0.17778 0.021483 1.0921 0.006754 0.059366 0.012376 0.62104 Deletion Peak 22 - CN values 17q11.2 chr17:29845106-29888119(probes 1325713:1325731) chr17:29858465-29872630(probes 1325724:1325725) chr17:29851236-29883766(probes 1325717:1325729) 0.049135 0.04909 Actual Copy Change Given -0.0055375 -0.0017908 -0.085324 -0.068797 -0.033668 0 -0.35792 0.18722 -0.022881 -0.34527 -0.71319 -0.26721 0.065656 -0.037082 -0.089963 -0.38626 0.31916 0.02564 -0.090758 -0.36 -0.0032278 0.52258 -0.0031859 -1.2929 0.58291 0.027162 -0.84587 0.04259 -0.0067813 -0.20837 -1.2598 0.0053366 0.041741 -0.042622 -0.057221 0.0076392 -0.60593 -0.059135 0.046574 0.0058309 0.033715 -0.0045695 -0.58147 0.013353 0 -0.42767 0.021744 -0.036946 0.025531 -0.086296 -0.0033243 -0.023018 0.038206 -0.11469 -0.085855 -0.056846 0.26357 0.047552 -0.069064 0.0012994 -0.21367 -0.021647 -0.0073339 0.029301 -0.091949 -0.22662 -0.66827 -1.0173 0.069636 0.040609 0.084643 0.17248 -0.021573 0 -0.035721 -0.41553 0.033764 -0.017529 -0.053881 0.0015255 -0.54017 1.5516 -0.52685 -0.10788 0.14997 -0.041702 0.024217 -0.40308 -0.90958 -0.051665 Deletion Peak 23 - CN values 17q21.2 chr17:36103873-43044679(probes 1328685:1331784) chr17:38272776-39896061(probes 1329557:1330349) chr17:35810504-43018065(probes 1328498:1331772) 0.0017784 0.030954 Actual Copy Change Given -0.0055375 -0.0017908 -0.085324 -0.88519 -0.033668 0 -1.001 0.18722 -0.022881 -0.34527 -0.042245 -0.26721 0.065656 -0.037082 -0.028771 -0.38626 0.31916 0.02564 -0.090758 -0.36 -0.0032278 0.52258 -0.0031859 -0.54577 0.58291 0.027162 -0.86208 0.04259 -0.0067813 -0.20837 -0.78049 0.0075 0.075703 -0.011887 -0.057221 0.0076392 -0.61172 -0.059135 0.046574 -0.022195 0.033715 -0.0045695 -0.58147 0.013353 0 -0.057116 0.021744 -0.036946 0.018803 -0.086296 -0.0033243 -0.023018 0.017264 -0.81671 -0.085855 -0.056846 0.26357 0.047552 -0.069064 0.013632 -0.21367 -0.021647 -0.0073339 0.029301 -0.091949 -0.22662 -0.68077 -1.0173 0.069636 -0.81335 0.084643 0.17459 -0.021573 0 -0.035721 -0.43127 0.033764 -0.84019 -0.053881 0.0015255 -0.54017 1.5516 -0.52685 -0.10788 -0.94033 -0.041702 0.024217 -0.81909 -0.90958 -0.051665 Deletion Peak 24 - CN values 17q24.2 chr17:66075888-66865465(probes 1343604:1344066) chr17:66531150-66600044(probes 1343813:1343838) chr17:66225358-67805453(probes 1343626:1344632) 0.0016162 0.011293 Actual Copy Change Given 0.021043 -0.0017908 -0.085324 -0.93946 -0.033668 0 -0.34561 0.18722 -0.022881 -0.34527 -0.042245 -0.26721 0.065656 -0.037082 -0.028771 -0.38626 0.31916 0.02564 -0.090758 -0.3661 -0.0032278 -1.2132 -0.0031859 0.49355 0.58291 0.027162 -0.86876 0.016286 -0.0067813 -0.20837 -0.79825 0.0075 0.075703 -0.028373 -0.03245 0.0076392 -0.053476 -0.059135 0.046574 0.024268 -0.89875 -0.0045695 -0.58147 0.013353 -0.070491 0.0096546 0.021744 -0.062092 2.6728 1.6996 -0.0033243 -0.023018 0.051103 -0.81901 -0.085855 -0.060883 0.26357 0.047552 -0.076012 0.013632 -0.21367 -0.024579 -0.0073339 0.029301 -0.10145 -0.22662 0.054091 -1.0173 0.069636 -0.84639 0.084065 0.18396 -0.021573 0 -0.047223 -0.45404 0.033764 -0.016567 -0.053881 0.0015255 -0.54017 1.5516 -0.55116 -0.10788 0.63374 -0.041702 0.024217 -0.81909 -0.89335 -0.051665 Deletion Peak 25 - CN values 20p12.1 chr20:1-22561381(probes 1417066:1431763) chr20:15252844-15274325(probes 1426031:1426032) chr20:14681864-15832281(probes 1425978:1426555) 0.030954 0.030954 Actual Copy Change Given 0.021463 -0.23556 -0.046448 0.71039 -0.046285 0.54418 -0.28762 -0.055229 0.7706 -1.2929 -0.6936 0.49597 0.070242 0.69746 1.3163 0.45378 0.30378 0.50598 -0.079476 0.50585 0.02812 -1.2044 -0.0024938 0.0013441 0.61788 1.3961 -0.86853 1.6907 -0.0076101 0.54594 0.052668 0.61389 0.072827 1.6018 -0.99618 1.2889 -0.015329 1.2932 1.5061 0.0022193 0.046195 1.596 -0.57595 -0.46876 -0.053255 -0.43387 0.025206 1.5115 0.043157 1.7666 -0.00013862 -0.011611 1.1255 0.4777 2.1158 1.3898 0.5865 0.043299 1.6997 1.1696 1.6308 -0.025072 1.375 1.1666 1.8135 0.38915 -0.0013858 -0.019452 0.74442 0.035947 0.066515 0.18108 1.5674 1.296 0.08551 1.0968 0.66771 -0.012989 1.1054 1.4914 0.12344 1.735 0.54541 -0.069332 0.42018 1.093 0.0052245 0.084209 -0.83962 -0.57512 Deletion Peak 26 - CN values 22q12.1 chr22:29192671-29455701(probes 1478762:1478941) chr22:29276121-29455701(probes 1478811:1478941) chr22:27996568-29624466(probes 1478123:1479038) 2.6118e-26 2.6118e-26 Actual Copy Change Given -0.0036011 -0.19261 -0.19229 -0.058731 -0.03094 -0.53439 -1.0196 -0.18484 -1.2929 -0.34744 -0.15975 -1.2929 -0.79511 -0.56166 -0.04388 -0.38798 -0.25285 -0.91809 1.1575 -1.2929 0.041741 0.037359 -0.0023553 -0.55076 -0.42963 -0.74177 0.055943 0.0033299 -0.13393 -0.60835 -0.8065 -1.2929 -0.80103 -0.061555 -0.047124 -0.011473 -1.1749 -0.077478 0.028215 -0.61441 0.06443 -0.0084385 -1.1253 -0.0018014 -1.2929 -0.55847 -0.45651 -0.83752 0.025531 -0.088417 -0.0011087 -0.006505 -1.0117 -0.11952 -1.2929 -0.073476 0.53099 0.070099 -0.081339 -0.029721 -0.90942 -0.028081 -0.064106 0.037113 -0.1329 -0.83446 -0.005814 -0.8733 0.10133 -0.85416 0.11785 -1.2929 -0.023629 0.038489 -0.38884 -0.90533 -0.53835 -1.2929 -0.076945 -0.028218 -1.2929 -0.17362 -0.55126 -0.14438 -0.54742 -0.04983 -0.38102 -0.81868 -0.075967 -0.017197