Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold TCGA-2H-A9GF-01A-11D-A37B-01 TCGA-2H-A9GH-01A-11D-A37B-01 TCGA-2H-A9GI-01A-11D-A37B-01 TCGA-2H-A9GJ-01A-11D-A37B-01 TCGA-2H-A9GK-01A-11D-A37B-01 TCGA-2H-A9GL-01A-12D-A37B-01 TCGA-2H-A9GM-01A-11D-A37B-01 TCGA-2H-A9GN-01A-11D-A37B-01 TCGA-2H-A9GO-01A-11D-A37B-01 TCGA-2H-A9GQ-01A-11D-A37B-01 TCGA-2H-A9GR-01A-12D-A37B-01 TCGA-IC-A6RE-01A-11D-A33D-01 TCGA-IC-A6RF-01A-13D-A33D-01 TCGA-IG-A3I8-01A-11D-A246-01 TCGA-IG-A3QL-01A-11D-A246-01 TCGA-IG-A3Y9-01A-12D-A246-01 TCGA-IG-A3YA-01A-11D-A246-01 TCGA-IG-A3YB-01A-11D-A246-01 TCGA-IG-A3YC-01A-11D-A246-01 TCGA-IG-A4P3-01A-11D-A25X-01 TCGA-IG-A4QS-01A-11D-A25X-01 TCGA-IG-A4QT-01A-21D-A25X-01 TCGA-IG-A50L-01A-11D-A25X-01 TCGA-IG-A51D-01A-11D-A25X-01 TCGA-IG-A5B8-01A-11D-A28A-01 TCGA-IG-A5S3-01A-11D-A28A-01 TCGA-IG-A625-01A-11D-A31T-01 TCGA-IG-A6QS-01A-12D-A33D-01 TCGA-IG-A7DP-01A-31D-A33D-01 TCGA-IG-A8O2-01A-11D-A36I-01 TCGA-IG-A97H-01A-11D-A386-01 TCGA-IG-A97I-01A-11D-A386-01 TCGA-JY-A6F8-01A-11D-A33D-01 TCGA-JY-A6FA-01A-11D-A33D-01 TCGA-JY-A6FB-01A-11D-A33D-01 TCGA-JY-A6FD-01A-11D-A33D-01 TCGA-JY-A6FE-01A-11D-A33D-01 TCGA-JY-A6FG-01A-11D-A33D-01 TCGA-JY-A6FH-01A-11D-A33D-01 TCGA-JY-A938-01A-11D-A37B-01 TCGA-JY-A939-01A-12D-A37B-01 TCGA-JY-A93C-01A-11D-A386-01 TCGA-JY-A93D-01A-11D-A386-01 TCGA-JY-A93E-01A-11D-A37B-01 TCGA-JY-A93F-01A-21D-A37B-01 TCGA-KH-A6WC-01A-11D-A33D-01 TCGA-L5-A43C-01A-11D-A246-01 TCGA-L5-A43E-01A-11D-A246-01 TCGA-L5-A43H-01A-11D-A246-01 TCGA-L5-A43I-01A-11D-A246-01 TCGA-L5-A43J-01A-12D-A246-01 TCGA-L5-A43M-01A-11D-A246-01 TCGA-L5-A4OE-01A-11D-A25X-01 TCGA-L5-A4OF-01A-11D-A25X-01 TCGA-L5-A4OG-01A-11D-A25X-01 TCGA-L5-A4OH-01A-11D-A25X-01 TCGA-L5-A4OI-01A-11D-A25X-01 TCGA-L5-A4OJ-01A-11D-A25X-01 TCGA-L5-A4OM-01A-11D-A25X-01 TCGA-L5-A4ON-01A-11D-A25X-01 TCGA-L5-A4OO-01A-11D-A25X-01 TCGA-L5-A4OP-01A-11D-A25X-01 TCGA-L5-A4OQ-01A-11D-A25X-01 TCGA-L5-A4OR-01A-11D-A25X-01 TCGA-L5-A4OS-01A-11D-A28A-01 TCGA-L5-A4OT-01A-11D-A28A-01 TCGA-L5-A4OU-01A-11D-A28A-01 TCGA-L5-A4OW-01A-11D-A28A-01 TCGA-L5-A4OX-01A-21D-A28A-01 TCGA-L5-A88S-01A-11D-A36I-01 TCGA-L5-A88T-01A-11D-A350-01 TCGA-L5-A88V-01A-11D-A350-01 TCGA-L5-A88W-01A-11D-A350-01 TCGA-L5-A88Y-01A-11D-A350-01 TCGA-L5-A88Z-01A-11D-A36I-01 TCGA-L5-A891-01A-11D-A36I-01 TCGA-L5-A893-01A-11D-A36I-01 TCGA-L5-A8NE-01A-11D-A37B-01 TCGA-L5-A8NF-01A-11D-A37B-01 TCGA-L5-A8NG-01A-11D-A37B-01 TCGA-L5-A8NH-01A-11D-A37B-01 TCGA-L5-A8NI-01A-11D-A37B-01 TCGA-L5-A8NJ-01A-11D-A36I-01 TCGA-L5-A8NK-01A-21D-A37B-01 TCGA-L5-A8NL-01A-12D-A37B-01 TCGA-L5-A8NM-01A-11D-A37B-01 TCGA-L5-A8NN-01A-11D-A37B-01 TCGA-L5-A8NQ-01A-11D-A36I-01 TCGA-L5-A8NR-01A-11D-A37B-01 TCGA-L5-A8NS-01A-12D-A37B-01 TCGA-L5-A8NT-01A-11D-A37B-01 TCGA-L5-A8NU-01A-11D-A36I-01 TCGA-L5-A8NV-01A-11D-A37B-01 TCGA-L5-A8NW-01A-11D-A37B-01 TCGA-L7-A56G-01A-21D-A25X-01 TCGA-L7-A6VZ-01A-12D-A33D-01 TCGA-LN-A49K-01A-11D-A246-01 TCGA-LN-A49L-01A-11D-A246-01 TCGA-LN-A49M-01A-21D-A25X-01 TCGA-LN-A49N-01A-11D-A246-01 TCGA-LN-A49O-01A-11D-A246-01 TCGA-LN-A49P-01A-11D-A246-01 TCGA-LN-A49R-01A-11D-A246-01 TCGA-LN-A49S-01A-11D-A246-01 TCGA-LN-A49U-01A-31D-A25X-01 TCGA-LN-A49V-01A-11D-A246-01 TCGA-LN-A49W-01A-11D-A25X-01 TCGA-LN-A49X-01A-31D-A25X-01 TCGA-LN-A49Y-01A-11D-A25X-01 TCGA-LN-A4A1-01A-21D-A25X-01 TCGA-LN-A4A2-01A-31D-A25X-01 TCGA-LN-A4A3-01A-11D-A25X-01 TCGA-LN-A4A4-01A-11D-A25X-01 TCGA-LN-A4A5-01A-21D-A25X-01 TCGA-LN-A4A6-01A-11D-A25X-01 TCGA-LN-A4A8-01A-32D-A25X-01 TCGA-LN-A4A9-01A-11D-A28A-01 TCGA-LN-A4MQ-01A-11D-A28A-01 TCGA-LN-A4MR-01A-11D-A28A-01 TCGA-LN-A5U5-01A-21D-A28A-01 TCGA-LN-A5U6-01A-11D-A28A-01 TCGA-LN-A5U7-01A-11D-A31T-01 TCGA-LN-A7HV-01A-21D-A350-01 TCGA-LN-A7HW-01A-22D-A350-01 TCGA-LN-A7HX-01A-11D-A33D-01 TCGA-LN-A7HY-01A-12D-A350-01 TCGA-LN-A7HZ-01A-31D-A350-01 TCGA-LN-A8HZ-01A-11D-A36I-01 TCGA-LN-A8I0-01A-11D-A36I-01 TCGA-LN-A8I1-01A-11D-A36I-01 TCGA-LN-A9FO-01A-11D-A386-01 TCGA-LN-A9FP-01A-31D-A386-01 TCGA-LN-A9FQ-01A-31D-A386-01 TCGA-LN-A9FR-01A-11D-A386-01 TCGA-M9-A5M8-01A-11D-A28A-01 TCGA-Q9-A6FU-01A-11D-A31T-01 TCGA-Q9-A6FW-01A-31D-A31T-01 TCGA-R6-A6DN-01B-11D-A31T-01 TCGA-R6-A6DQ-01B-11D-A31T-01 TCGA-R6-A6KZ-01A-11D-A31T-01 TCGA-R6-A6L4-01A-11D-A31T-01 TCGA-R6-A6L6-01B-11D-A33D-01 TCGA-R6-A6XG-01B-11D-A33D-01 TCGA-R6-A6XQ-01B-11D-A33D-01 TCGA-R6-A6Y0-01B-11D-A33D-01 TCGA-R6-A6Y2-01B-11D-A33D-01 TCGA-R6-A8W5-01B-11D-A37B-01 TCGA-R6-A8W8-01B-11D-A37B-01 TCGA-R6-A8WC-01A-11D-A37B-01 TCGA-R6-A8WG-01A-11D-A37B-01 TCGA-RE-A7BO-01A-11D-A33D-01 TCGA-S8-A6BV-01A-21D-A31T-01 TCGA-S8-A6BW-01A-11D-A31T-01 TCGA-V5-A7RB-01A-11D-A350-01 TCGA-V5-A7RC-01B-11D-A402-01 TCGA-V5-A7RE-01A-11D-A350-01 TCGA-V5-AASV-01A-11D-A386-01 TCGA-V5-AASW-01A-11D-A402-01 TCGA-V5-AASX-01A-11D-A386-01 TCGA-VR-A8EO-01A-11D-A36I-01 TCGA-VR-A8EP-01A-31D-A402-01 TCGA-VR-A8EQ-01A-11D-A36I-01 TCGA-VR-A8ER-01A-11D-A36I-01 TCGA-VR-A8ET-01A-11D-A402-01 TCGA-VR-A8EU-01A-11D-A36I-01 TCGA-VR-A8EW-01A-11D-A36I-01 TCGA-VR-A8EX-01A-11D-A36I-01 TCGA-VR-A8EY-01A-11D-A36I-01 TCGA-VR-A8EZ-01A-11D-A36I-01 TCGA-VR-A8Q7-01A-11D-A37B-01 TCGA-VR-AA4D-01A-11D-A37B-01 TCGA-VR-AA4G-01A-11D-A37B-01 TCGA-VR-AA7B-01A-31D-A402-01 TCGA-VR-AA7D-01A-11D-A402-01 TCGA-VR-AA7I-01A-11D-A402-01 TCGA-X8-AAAR-01A-11D-A402-01 TCGA-XP-A8T6-01A-11D-A36I-01 TCGA-XP-A8T7-01A-11D-A36I-01 TCGA-XP-A8T8-01A-11D-A36I-01 TCGA-Z6-A8JD-01A-11D-A36I-01 TCGA-Z6-A8JE-01A-11D-A37B-01 TCGA-Z6-A9VB-01A-21D-A37B-01 TCGA-Z6-AAPN-01A-11D-A402-01 TCGA-ZR-A9CJ-01B-11D-A386-01 Amplification Peak 1 1p34.2 chr1:40264205-40567215(probes 19359:19527) chr1:40381292-40408279(probes 19417:19432) chr1:39568931-41667537(probes 19058:20039) 0.0024624 0.0024624 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 2 0 0 0 0 2 0 0 0 0 0 1 0 1 2 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 Amplification Peak 2 1q23.3 chr1:120523956-171983088(probes 67527:81298) chr1:161286722-161327096(probes 73577:73594) chr1:158852682-162504245(probes 72083:74320) 0.0022446 0.13568 0: t<0.1; 1: 0.10.9 0 2 0 1 0 0 2 1 1 2 0 1 0 0 1 1 0 0 1 1 1 0 1 1 1 1 2 0 0 1 1 0 1 2 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 1 1 1 1 2 0 1 2 0 0 1 0 0 1 0 0 1 0 1 1 1 1 2 1 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 1 0 1 2 1 0 0 0 0 1 1 2 0 0 0 0 1 1 0 0 0 0 1 1 1 1 1 0 0 1 0 0 1 1 1 1 1 1 2 1 0 0 0 2 0 0 1 0 1 1 1 0 1 0 0 1 0 2 1 0 1 1 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 1 0 1 1 1 1 Amplification Peak 3 1q42.3 chr1:234915915-235019265(probes 120649:120702) chr1:234940120-234987284(probes 120653:120687) chr1:234644649-235527646(probes 120471:120905) 8.2636e-05 0.00096792 0: t<0.1; 1: 0.10.9 1 1 0 0 0 0 2 2 1 0 0 1 0 0 1 1 0 1 1 2 0 0 1 1 1 1 2 0 0 1 1 0 1 0 1 0 1 0 2 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 1 0 0 2 2 0 1 1 0 0 1 0 0 1 0 0 1 0 1 1 1 1 2 1 0 1 1 0 0 1 0 1 0 0 0 0 0 1 2 1 1 2 2 0 0 0 0 0 1 1 2 1 0 0 0 1 1 0 0 0 1 1 1 2 1 1 0 0 1 1 0 1 1 1 1 1 1 2 1 0 0 0 0 0 2 1 0 1 1 2 0 1 0 0 1 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 1 2 1 0 1 0 1 1 1 1 Amplification Peak 4 2q14.2 chr2:117471735-123226137(probes 189653:192811) chr2:122268229-122371437(probes 192241:192274) chr2:117937520-122779093(probes 189656:192492) 0.0043633 0.044171 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 1 1 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 2 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 1 2 0 0 2 0 0 0 1 0 0 2 0 0 2 1 0 1 0 1 0 1 0 2 1 0 2 1 0 0 1 0 1 1 1 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 1 1 0 0 0 0 0 1 2 0 0 1 0 0 0 0 1 1 0 0 1 0 1 1 0 Amplification Peak 5 2q31.1 chr2:173028657-173414076(probes 219859:220155) chr2:173050176-173071269(probes 219868:219879) chr2:173036820-173415559(probes 219860:220157) 0.034927 0.18371 0: t<0.1; 1: 0.10.9 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 1 0 2 0 0 0 0 0 0 1 0 2 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 2 1 0 1 0 0 0 0 0 1 1 0 1 1 0 0 1 0 1 1 1 0 1 1 2 0 0 0 0 1 0 0 1 0 1 1 2 0 0 1 1 0 2 0 1 1 1 0 2 0 1 0 0 0 0 2 1 0 0 0 0 1 0 0 Amplification Peak 6 3q26.2 chr3:169464943-169746250(probes 351007:351183) chr3:169486733-169497675(probes 351014:351016) chr3:136214597-198022430(probes 334079:365353) 2.8915e-20 2.8915e-20 0: t<0.1; 1: 0.10.9 0 1 2 1 2 1 0 0 1 2 2 1 1 2 1 1 2 1 1 2 1 0 2 2 1 1 2 1 0 2 1 2 0 2 1 0 2 0 1 0 0 1 0 1 0 0 0 2 2 0 1 0 1 0 0 0 0 0 2 1 1 2 1 1 0 0 1 1 0 2 0 1 0 0 2 0 0 1 1 1 0 0 1 0 1 0 1 0 1 1 1 0 2 0 2 1 2 1 1 1 1 1 1 1 0 1 1 0 2 1 2 1 2 1 1 1 2 2 1 2 2 2 1 2 2 2 2 2 1 2 1 1 2 1 0 2 0 1 2 1 0 0 0 1 1 0 0 1 0 1 0 0 2 0 2 0 0 2 1 2 1 1 2 0 2 2 1 2 1 1 0 2 2 2 2 0 1 1 2 1 0 2 0 1 Amplification Peak 7 4q13.3 chr4:73135093-77631886(probes 404337:407040) chr4:74110050-74158211(probes 404913:404921) chr4:73906111-74164821(probes 404833:404924) 0.11705 0.11705 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 0 0 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 2 0 0 1 0 0 0 0 1 0 0 0 Amplification Peak 8 5p15.33 chr5:1-938697(probes 467486:467493) chr5:1-935090(probes 467486:467492) chr5:1-1893926(probes 467486:467613) 0.00042289 0.00042289 0: t<0.1; 1: 0.10.9 0 0 1 0 0 2 0 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 2 0 2 1 0 0 0 1 2 0 0 1 0 1 2 0 1 0 0 0 1 2 0 0 1 0 1 1 2 1 0 0 0 1 2 0 2 0 0 1 0 2 0 1 1 2 0 2 0 1 0 2 0 1 0 1 0 1 1 0 1 2 0 0 0 0 0 1 1 0 1 0 1 1 1 0 0 0 1 0 1 1 2 0 1 1 2 1 0 0 1 1 2 1 0 1 2 2 2 2 2 2 1 2 1 2 1 2 0 0 1 2 0 2 0 0 0 1 1 0 1 0 1 0 2 0 0 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 2 1 2 0 2 0 0 2 0 2 0 1 1 2 2 2 1 Amplification Peak 9 6p21.1 chr6:43657128-43847055(probes 593160:593260) chr6:43733839-43756051(probes 593192:593198) chr6:38635094-47619510(probes 589863:595522) 9.6697e-14 9.6697e-14 0: t<0.1; 1: 0.10.9 1 0 1 1 2 0 2 2 1 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 1 1 1 2 1 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 2 0 2 2 0 1 0 0 1 0 2 0 1 0 2 0 1 1 1 1 2 2 2 0 0 0 0 1 1 0 0 1 0 1 0 1 2 1 1 0 0 1 0 0 2 0 1 0 1 0 0 1 0 0 0 0 0 2 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 1 1 1 0 2 0 2 2 0 0 0 2 0 0 2 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 1 0 0 Amplification Peak 10 6q23.3 chr6:135500891-135715565(probes 642666:642883) chr6:135507467-135642755(probes 642678:642835) chr6:135501356-135721284(probes 642667:642885) 0.20377 0.20377 0: t<0.1; 1: 0.10.9 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 2 1 2 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 Amplification Peak 11 7p11.2 chr7:54942676-55390810(probes 695618:696088) chr7:55221656-55356531(probes 695959:696074) chr7:53176077-57924998(probes 694567:696703) 6.1735e-13 1.3479e-12 0: t<0.1; 1: 0.10.9 2 0 0 0 1 1 1 1 1 0 2 1 0 0 1 2 0 0 1 1 0 0 2 1 1 1 0 0 0 0 1 0 0 1 1 1 0 0 0 0 1 1 0 1 0 0 1 1 1 2 1 0 1 1 1 2 0 2 1 2 1 0 1 2 1 1 1 1 0 1 1 2 0 1 0 1 1 1 1 1 2 0 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 0 0 0 1 0 1 0 1 2 1 1 2 1 1 2 2 0 1 2 0 1 2 0 1 1 0 1 0 2 0 1 0 2 1 2 1 1 0 2 1 1 1 1 1 1 0 0 1 1 0 2 1 1 1 1 1 2 1 0 1 1 1 2 1 0 0 1 0 1 2 2 1 1 1 0 0 0 1 1 1 0 1 0 0 1 1 1 Amplification Peak 12 7q21.2 chr7:91837002-93854668(probes 709556:710838) chr7:92560001-92610118(probes 710119:710144) chr7:84182369-109072928(probes 706474:718671) 6.0529e-14 8.6198e-14 0: t<0.1; 1: 0.10.9 0 2 0 0 0 0 0 2 2 0 1 2 0 0 2 0 0 1 2 0 1 0 1 2 0 1 0 1 0 0 1 0 0 2 1 1 1 0 1 0 1 1 1 2 0 0 1 1 1 1 0 0 1 0 1 2 0 0 2 2 1 0 1 1 1 1 2 2 0 1 0 1 0 1 0 1 1 0 2 1 2 0 1 1 1 0 0 0 0 1 1 0 1 2 1 2 1 1 0 0 2 1 1 1 1 1 0 2 2 2 1 2 2 0 1 1 1 1 0 0 1 2 0 1 0 1 0 1 0 2 1 0 1 0 0 0 1 2 1 0 0 1 1 1 0 1 0 2 0 1 1 0 1 2 1 0 1 1 0 2 1 0 0 2 2 1 2 1 1 0 1 2 1 2 0 1 1 0 0 0 1 1 0 1 Amplification Peak 13 8p23.1 chr8:11355603-12562991(probes 749376:749505) chr8:11384842-12562454(probes 749402:749504) chr8:9793180-12570388(probes 748522:749507) 2.785e-07 3.1574e-06 0: t<0.1; 1: 0.10.9 1 0 1 0 0 0 0 1 2 0 2 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 1 0 2 2 1 0 1 2 1 2 0 0 0 0 0 0 1 2 1 1 0 0 0 1 0 2 0 1 0 0 0 0 0 1 0 0 0 1 0 0 2 0 0 1 0 1 1 1 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 2 Amplification Peak 14 8p11.21 chr8:41721029-42518767(probes 768438:768934) chr8:42236796-42315599(probes 768805:768838) chr8:40836594-47465442(probes 767888:769101) 1.5487e-05 7.6281e-05 0: t<0.1; 1: 0.10.9 0 0 1 2 0 0 2 1 1 1 0 0 0 1 2 0 2 0 0 2 1 0 0 1 0 0 1 0 0 1 0 0 1 2 1 1 2 0 0 0 0 2 1 0 1 0 1 2 1 2 0 0 0 1 0 0 1 0 1 1 1 0 0 1 0 1 0 1 2 0 0 0 0 1 0 1 0 0 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 0 0 2 1 1 0 0 0 2 0 1 1 1 0 1 2 0 0 1 2 0 1 0 1 2 0 0 0 0 1 0 0 1 1 1 0 2 2 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 1 1 2 0 0 0 1 0 1 0 1 1 0 0 0 1 2 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 Amplification Peak 15 8q24.21 chr8:128702020-128724664(probes 815688:815712) chr8:128710713-128724425(probes 815701:815711) chr8:98923037-146364022(probes 798185:825604) 2.9383e-31 2.9383e-31 0: t<0.1; 1: 0.10.9 1 2 1 2 1 2 2 1 1 2 1 1 0 1 2 1 1 1 1 0 2 0 2 1 2 0 1 2 0 1 1 2 2 2 2 1 2 2 0 1 2 2 1 0 1 0 2 2 1 1 2 0 1 0 0 2 1 2 1 2 1 0 2 1 1 1 0 1 1 0 0 2 0 1 0 1 0 1 0 1 2 0 0 1 1 1 1 1 1 1 1 0 0 1 2 2 1 1 1 1 2 2 2 2 2 2 1 1 1 2 2 1 2 2 1 0 2 1 2 0 2 1 1 1 2 1 1 1 1 1 2 0 2 1 0 0 0 2 1 1 2 2 2 0 1 0 2 2 0 1 2 1 1 2 0 1 1 1 1 0 1 1 1 0 1 1 2 2 1 2 1 0 2 2 1 0 1 1 0 2 1 1 0 2 Amplification Peak 16 9p13.3 chr9:35533693-35696801(probes 846710:846783) chr9:35593594-35641858(probes 846740:846751) chr9:35335144-35856591(probes 846622:846848) 0.0054032 0.0054032 0: t<0.1; 1: 0.10.9 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 0 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 2 0 0 Amplification Peak 17 9q34.3 chr9:140086046-140219867(probes 893037:893039) chr9:140141302-140219854(probes 893038:893038) chr9:140141302-140290845(probes 893038:893041) 0.24147 0.24147 0: t<0.1; 1: 0.10.9 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 2 0 0 1 0 1 0 1 0 2 0 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 1 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 2 1 2 0 0 2 0 1 0 0 1 0 1 0 0 0 1 1 0 1 1 0 1 1 0 0 2 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 2 0 0 0 1 1 0 0 1 1 0 Amplification Peak 18 11p13 chr11:33149811-35674319(probes 994515:996345) chr11:34490538-34563602(probes 995332:995402) chr11:34218859-35550287(probes 995079:996245) 0.029592 0.084777 0: t<0.1; 1: 0.10.9 0 0 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 2 0 1 0 0 0 1 0 1 1 0 0 1 0 0 1 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 0 0 0 1 0 0 0 1 0 1 2 0 0 1 0 0 0 0 2 0 2 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 2 0 0 0 2 0 2 0 1 1 0 0 0 0 1 0 0 1 1 1 0 0 1 0 2 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 Amplification Peak 19 11p13 chr11:1-135006516(probes 973762:1050574) chr11:35244059-35263023(probes 995930:995942) chr11:34218859-35550287(probes 995079:996245) 0.018342 1 0: t<0.1; 1: 0.10.9 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 1 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 1 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 2 0 0 1 0 0 0 0 2 0 2 0 2 0 0 0 1 0 0 0 1 0 0 0 1 1 2 0 0 2 2 0 2 0 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 2 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 Amplification Peak 20 11q13.3 chr11:69647998-69671074(probes 1010144:1010153) chr11:69650888-69670716(probes 1010145:1010152) chr11:66096153-77315230(probes 1008740:1014106) 1.2639e-101 1.2639e-101 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 2 2 0 2 2 0 0 0 2 0 2 0 2 0 2 1 2 1 0 1 0 1 0 0 1 0 0 0 2 0 0 0 0 2 2 1 1 1 1 1 1 0 0 2 0 0 0 2 0 1 0 2 0 0 2 0 2 0 1 0 2 0 1 2 0 2 2 0 2 0 0 1 2 1 0 0 0 2 2 2 0 2 0 2 2 0 0 2 1 0 2 2 1 2 2 2 2 2 2 2 2 0 1 2 0 2 2 0 2 2 1 2 1 0 2 2 2 0 1 0 0 1 2 1 0 0 1 0 2 1 0 1 0 0 0 1 0 0 0 2 0 0 1 0 2 0 1 2 0 2 2 2 2 2 0 1 2 2 2 2 0 2 2 2 1 2 2 1 1 Amplification Peak 21 12p12.1 chr12:24880663-25593511(probes 1064551:1064930) chr12:25402469-25556703(probes 1064800:1064899) chr12:24423552-29620686(probes 1064217:1067499) 7.5822e-11 1.1976e-10 0: t<0.1; 1: 0.10.9 0 0 0 0 1 1 0 0 1 1 2 0 0 0 2 0 0 2 1 1 2 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 1 0 1 0 0 0 2 0 1 1 1 0 0 0 0 2 2 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 2 2 1 1 2 0 2 1 1 1 0 1 1 0 0 1 0 1 2 0 1 1 0 0 2 1 1 1 1 1 0 0 2 1 0 1 1 0 0 0 0 0 0 2 1 1 0 0 2 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 1 1 2 1 0 1 0 0 0 0 0 0 2 0 0 1 1 2 1 1 2 Amplification Peak 22 12q15 chr12:69499276-70210091(probes 1087170:1087648) chr12:69681414-69723708(probes 1087291:1087314) chr12:65650739-72197573(probes 1084505:1088842) 1.8454e-06 2.2421e-06 0: t<0.1; 1: 0.10.9 0 0 0 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 2 2 0 0 2 0 0 1 0 1 0 0 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 2 0 2 0 0 0 0 0 1 0 0 2 0 0 1 0 2 2 0 0 2 0 0 1 0 0 0 0 1 0 0 1 Amplification Peak 23 13q22.1 chr13:73630948-74089174(probes 1154482:1154838) chr13:73883427-73910025(probes 1154668:1154691) chr13:73880414-74047190(probes 1154664:1154804) 0.12017 0.12017 0: t<0.1; 1: 0.10.9 0 1 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 2 0 0 0 2 0 1 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 1 2 0 1 0 0 1 0 2 0 0 0 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 2 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 2 0 1 2 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 1 0 2 2 1 0 0 1 0 1 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 0 0 1 Amplification Peak 24 14q21.1 chr14:35399861-39058108(probes 1188333:1190377) chr14:37851981-37860558(probes 1189775:1189776) chr14:37610483-38056422(probes 1189665:1189871) 0.15689 0.15689 0: t<0.1; 1: 0.10.9 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 2 1 0 0 1 0 1 0 1 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 1 0 0 0 2 0 0 1 2 0 1 0 1 0 1 1 2 0 1 0 1 1 2 1 0 1 Amplification Peak 25 15q26.1 chr15:89828332-102531392(probes 1266438:1273700) chr15:90826965-90953647(probes 1267003:1267009) chr15:90660360-91075128(probes 1266895:1267090) 0.10665 0.10665 0: t<0.1; 1: 0.10.9 1 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 1 2 1 1 1 1 0 1 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 2 1 0 1 1 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 2 1 0 1 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 2 Amplification Peak 26 17q12 chr17:37737580-37930169(probes 1329237:1329346) chr17:37854508-37929558(probes 1329279:1329345) chr17:36698597-40145610(probes 1328762:1330404) 1.7302e-22 1.7302e-22 0: t<0.1; 1: 0.10.9 2 0 2 1 0 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 2 0 1 1 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 0 2 0 2 1 2 2 0 0 0 2 0 0 1 0 0 0 0 2 1 2 2 0 2 0 1 0 2 0 1 0 0 0 0 0 0 2 0 0 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 2 0 1 1 1 2 0 2 1 0 1 0 2 0 2 1 0 0 1 0 1 2 1 2 1 0 0 0 1 1 1 0 2 0 0 0 2 0 2 0 1 1 1 0 0 0 1 0 0 0 Amplification Peak 27 18p11.32 chr18:983189-2081265(probes 1351022:1351407) chr18:1373925-1478686(probes 1351210:1351273) chr18:1-2211652(probes 1350899:1351519) 0.01372 0.01372 0: t<0.1; 1: 0.10.9 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 2 1 0 1 1 0 2 0 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 1 0 1 0 1 2 0 1 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 1 0 2 2 2 1 1 1 0 0 1 1 0 0 0 0 1 1 1 0 1 0 0 0 1 1 0 0 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 1 0 0 1 0 2 1 1 1 1 0 Amplification Peak 28 18q11.2 chr18:19613596-19648445(probes 1359457:1359468) chr18:19632617-19641473(probes 1359462:1359467) chr18:19093979-22460385(probes 1359240:1361227) 5.2675e-08 5.2675e-08 0: t<0.1; 1: 0.10.9 0 0 0 2 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 2 0 1 1 0 2 0 0 0 0 2 1 0 0 2 0 0 0 2 0 0 0 2 0 1 0 0 1 2 2 0 0 1 0 0 2 0 1 0 0 1 1 1 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 1 0 0 2 0 1 1 0 0 2 0 1 0 2 0 0 2 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 1 1 1 0 Amplification Peak 29 19q12 chr19:30258695-30349882(probes 1403724:1403799) chr19:30307099-30315734(probes 1403767:1403777) chr19:29277891-31500858(probes 1402934:1404586) 1.2339e-07 1.2339e-07 0: t<0.1; 1: 0.10.9 0 2 0 2 1 0 0 2 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 2 1 0 2 1 2 0 0 0 0 0 0 0 0 0 0 2 0 2 0 1 0 0 0 1 0 0 1 0 2 0 1 0 1 1 1 1 1 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 2 0 2 0 2 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 2 0 0 0 1 0 0 0 Amplification Peak 30 Xq28 chrX:152735103-153624575(probes 1553288:1553583) chrX:153052650-153184175(probes 1553408:1553473) chrX:152972542-153240309(probes 1553374:1553486) 0.18371 0.18371 0: t<0.1; 1: 0.10.9 0 0 1 0 0 2 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 1 0 1 1 1 0 2 0 0 2 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 2 1 0 1 1 0 0 1 0 1 0 1 1 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 1 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 2 1 0 1 0 1 0 1 0 0 1 0 1 0 0 0 0 0 2 1 0 1 1 1 1 0 1 0 1 0 2 0 1 1 1 0 0 1 Deletion Peak 1 1p36.11 chr1:23960869-31653987(probes 11303:14822) chr1:27089269-27099659(probes 12677:12678) chr1:23845194-31520500(probes 11250:14774) 0.0012162 0.0043495 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 1 1 0 1 1 1 0 1 1 0 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 0 1 1 0 1 1 0 1 1 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 0 1 1 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 1 Deletion Peak 2 1p13.2 chr1:113498011-117457733(probes 63215:65695) chr1:114417438-114525573(probes 63688:63740) chr1:104846636-149882013(probes 58184:67528) 8.8025e-06 2.0956e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 0 1 0 0 1 1 1 0 1 1 0 0 1 0 1 1 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 1 1 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 Deletion Peak 3 1q44 chr1:245290228-247052144(probes 127528:128174) chr1:245911868-247052144(probes 127948:128174) chr1:246037293-246037919(probes 128062:128063) 0.0006282 0.00061641 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 Deletion Peak 4 2q22.1 chr2:140708948-143637838(probes 201128:202970) chr2:140976294-142894275(probes 201262:202533) chr2:141033330-142752009(probes 201288:202444) 1.1171e-27 7.8259e-26 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 1 1 0 0 1 0 1 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 0 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 0 0 1 0 1 0 1 1 1 1 0 1 1 0 Deletion Peak 5 2q33.3 chr2:204826225-206558638(probes 236615:237829) chr2:205401039-206486163(probes 237012:237774) chr2:205566556-206454143(probes 237118:237754) 6.9949e-07 0.00014209 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 1 Deletion Peak 6 3p26.2 chr3:3220635-4535479(probes 259830:260623) chr3:3742290-4511101(probes 260344:260602) chr3:1-4874790(probes 259400:260937) 7.5581e-06 0.045006 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 1 1 0 0 1 0 1 1 0 1 1 1 0 1 0 1 0 1 0 0 1 0 0 1 1 1 1 0 1 1 0 0 1 0 0 0 0 0 1 0 1 0 1 0 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 1 0 0 1 1 0 0 0 0 1 0 1 1 1 1 0 1 0 0 1 0 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 Deletion Peak 7 3p14.3 chr3:53923579-55500153(probes 288783:290035) chr3:54150629-55115508(probes 288906:289693) chr3:47900247-93743932(probes 286166:310076) 8.8275e-10 0.00017897 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 0 1 1 1 0 1 1 0 1 1 1 0 0 0 0 1 1 1 0 1 0 1 1 0 0 0 1 1 1 0 1 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 0 1 1 0 0 0 0 1 0 1 1 1 1 0 1 0 0 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 Deletion Peak 8 3p14.2 chr3:59702822-61026498(probes 292622:292623) chr3:59702822-61238217(probes 292622:292820) chr3:47900247-93743932(probes 286166:310076) 6.9854e-22 3.143e-14 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 0 0 0 0 1 1 1 0 1 0 1 1 0 0 0 1 1 1 0 1 1 0 0 1 0 1 1 0 0 1 0 1 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 1 0 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 Deletion Peak 9 3q11.1 chr3:90078624-93767487(probes 309982:310080) chr3:90485637-93736225(probes 310072:310073) chr3:47900247-93743932(probes 286166:310076) 6.4878e-07 0.0026913 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 Deletion Peak 10 3q26.31 chr3:174345545-175760559(probes 353555:354085) chr3:174148679-175760559(probes 353464:354085) chr3:174689921-174696603(probes 353775:353776) 0.00066738 0.00065002 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 Deletion Peak 11 4p15.2 chr4:20726855-22351071(probes 377360:378525) chr4:20727465-21952452(probes 377361:378274) chr4:21195018-21556768(probes 377720:377967) 8.3319e-05 8.3319e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 1 1 1 0 1 0 1 0 1 1 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 1 0 0 1 1 0 1 0 0 1 0 1 0 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 1 1 1 0 1 0 1 1 1 0 1 1 0 1 1 1 1 1 0 0 1 0 1 0 0 1 1 1 1 1 0 0 1 1 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 0 1 1 0 0 0 1 1 1 0 1 0 1 0 1 0 1 1 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 0 0 0 1 1 0 1 0 0 Deletion Peak 12 4q22.1 chr4:91271445-93240505(probes 415174:416106) chr4:91035787-92525194(probes 415011:415793) chr4:91024035-92575500(probes 415004:415821) 5.7334e-42 4.6419e-41 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 1 1 1 1 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 1 1 0 1 0 0 1 1 0 1 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 1 1 1 1 0 1 0 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 1 0 1 1 1 1 1 0 0 1 1 0 1 0 0 1 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 0 0 1 0 1 1 0 1 1 0 1 0 0 1 0 0 1 0 1 1 0 1 0 1 0 1 1 0 0 1 0 Deletion Peak 13 4q34.3 chr4:170189485-191154276(probes 458174:467485) chr4:178097484-178103524(probes 462447:462448) chr4:170791901-191154276(probes 458470:467485) 0.000831 0.22393 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 1 0 1 1 1 0 1 1 1 0 0 0 1 1 1 0 1 1 1 1 0 1 0 1 0 1 0 1 1 1 1 0 1 0 1 1 1 1 0 1 0 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 1 0 1 1 0 1 1 1 0 1 1 1 0 0 0 1 1 0 1 1 1 1 1 0 1 1 1 0 1 0 1 1 1 1 0 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 0 0 0 1 Deletion Peak 14 5q12.1 chr5:58998410-59780946(probes 498965:499351) chr5:58260298-59818245(probes 498420:499376) chr5:50289497-93894337(probes 493399:517211) 1.0706e-31 1.0706e-31 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 1 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 1 0 1 1 1 1 0 1 1 0 1 1 0 1 1 1 0 1 0 0 0 1 0 1 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 0 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 0 1 0 1 0 0 1 0 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 1 0 0 1 1 1 1 0 1 1 1 0 1 0 0 1 0 0 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 0 1 0 1 0 0 0 1 1 1 1 Deletion Peak 15 6p25.3 chr6:1608837-2624052(probes 568031:568723) chr6:1621405-2252425(probes 568034:568450) chr6:1-28100639(probes 567522:585562) 2.0317e-23 2.0317e-23 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 1 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 1 0 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 0 1 0 1 0 0 0 0 1 1 1 0 1 0 1 1 1 1 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 1 1 Deletion Peak 16 6q16.3 chr6:64422619-119216880(probes 602253:632723) chr6:100950856-101332214(probes 622497:622635) chr6:100973378-101496387(probes 622507:622724) 0.036953 0.07459 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 1 Deletion Peak 17 6q26 chr6:161693099-163153207(probes 659118:659764) chr6:161767520-163153207(probes 659159:659764) chr6:162132257-162136708(probes 659462:659463) 0.00073804 0.0021474 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 1 1 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 1 1 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 Deletion Peak 18 7q31.1 chr7:110746146-111366370(probes 719619:719646) chr7:110236682-111354928(probes 719361:719640) chr7:109133055-159138663(probes 718724:744493) 4.1663e-30 2.0317e-23 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 1 1 0 1 0 1 1 1 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 0 1 1 1 0 0 0 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 Deletion Peak 19 7q36.3 chr7:157210222-158385117(probes 744009:744492) chr7:157327529-158385117(probes 744078:744492) chr7:109133055-159138663(probes 718724:744493) 1.2155e-13 6.3736e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 1 1 0 1 1 1 0 1 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 1 0 0 0 1 1 1 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 1 0 0 1 0 Deletion Peak 20 8p23.2 chr8:2112968-4251283(probes 745228:746335) chr8:2784419-4854274(probes 745262:746670) chr8:1-4812592(probes 744494:746612) 2.1719e-13 5.7763e-13 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 1 0 1 1 0 1 1 1 1 0 1 0 0 1 0 0 1 1 0 1 0 1 1 0 1 1 1 1 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 1 0 1 1 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 1 0 1 1 1 1 0 1 0 0 0 1 1 0 1 1 0 1 0 0 0 1 0 1 1 1 1 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 1 0 1 1 1 1 0 1 0 1 1 1 1 0 1 1 0 0 1 1 1 0 Deletion Peak 21 8p12 chr8:18941489-47750537(probes 754297:769207) chr8:31490622-32624361(probes 762752:763653) chr8:32019683-32257620(probes 763146:763349) 0.060925 0.21551 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 1 1 1 0 0 1 0 1 1 0 1 0 0 1 0 0 1 1 0 0 0 1 1 0 1 0 1 0 0 0 0 0 1 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 1 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 1 1 1 1 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 1 1 1 1 0 1 1 0 0 1 0 1 1 Deletion Peak 22 9p23 chr9:7887952-12687261(probes 829883:831851) chr9:9437437-9442740(probes 830840:830842) chr9:1-27518025(probes 825605:842414) 2.2321e-08 0.17609 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 1 0 0 1 1 1 1 1 0 0 0 0 0 0 1 1 1 0 1 0 1 1 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 1 0 1 0 1 0 0 0 1 1 1 0 1 1 0 0 1 1 1 0 1 0 0 0 1 0 1 1 1 0 1 1 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 1 1 0 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 1 1 0 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 0 0 0 1 0 1 1 1 0 1 1 1 Deletion Peak 23 9p21.3 chr9:21931610-22003135(probes 838993:839032) chr9:21959052-21997722(probes 839015:839028) chr9:1-27518025(probes 825605:842414) 3.8792e-136 1.4171e-131 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 1 0 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 1 0 1 0 0 1 0 1 1 1 1 0 1 0 1 0 0 1 1 1 1 0 0 1 1 1 1 1 1 0 1 0 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 Deletion Peak 24 10p15.3 chr10:1-6469154(probes 893270:897217) chr10:1-484158(probes 893270:893316) chr10:1-645915(probes 893270:893324) 0.041463 0.10368 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 0 1 1 0 0 1 0 Deletion Peak 25 10p11.21 chr10:34059131-35328087(probes 916518:917249) chr10:34397064-35128523(probes 916762:917230) chr10:34527811-34849656(probes 916881:917069) 9.2419e-07 1.965e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 1 0 1 1 0 1 1 0 0 0 1 1 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 1 0 0 0 1 1 1 1 0 0 1 0 Deletion Peak 26 10q21.1 chr10:38686143-71338246(probes 919223:933838) chr10:52739810-54061437(probes 922833:923855) chr10:53358478-53360339(probes 923345:923346) 0.039099 0.11316 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 1 1 0 1 0 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 Deletion Peak 27 10q23.31 chr10:89506488-92501260(probes 945136:947245) chr10:89617402-89735907(probes 945204:945393) chr10:88042531-92132870(probes 944531:946987) 0.00081373 0.0096469 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 1 1 0 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 1 1 1 0 1 1 0 1 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 0 0 1 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 Deletion Peak 28 11p15.4 chr11:1-3686943(probes 973762:974816) chr11:2981170-2986775(probes 974586:974587) chr11:1-3837204(probes 973762:974894) 0.0016785 0.0017058 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 0 0 1 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 1 1 0 1 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 0 1 0 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 1 0 0 1 1 0 1 1 0 1 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 Deletion Peak 29 11q25 chr11:130433734-135006516(probes 1048307:1050574) chr11:133303820-133313263(probes 1050149:1050150) chr11:105827942-135006516(probes 1031601:1050574) 1.0131e-05 1.0373e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 1 0 1 0 0 0 1 1 1 1 0 1 0 0 1 1 0 0 0 0 0 1 0 1 0 1 1 1 1 1 1 0 0 1 0 0 1 1 0 0 1 1 1 0 1 1 1 0 1 1 0 1 1 0 1 1 0 0 0 0 1 1 1 1 0 0 1 1 1 1 1 0 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 0 0 0 1 0 0 1 0 1 1 1 0 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 0 Deletion Peak 30 12q23.1 chr12:73057951-101115327(probes 1089362:1106222) chr12:99119341-100380401(probes 1105217:1105876) chr12:99662213-99666802(probes 1105547:1105548) 0.045584 0.046604 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 1 0 0 0 1 0 1 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 1 0 Deletion Peak 31 13q12.11 chr13:1-23524878(probes 1124041:1126033) chr13:19520116-19645550(probes 1124076:1124177) chr13:1-24062734(probes 1124041:1126425) 0.0041918 0.12747 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 0 0 1 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 0 0 0 1 1 1 1 1 0 1 0 0 0 1 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 1 1 0 1 0 0 0 Deletion Peak 32 13q14.2 chr13:48875329-49064807(probes 1142547:1142766) chr13:48875753-49060837(probes 1142548:1142764) chr13:48679840-49183128(probes 1142439:1142842) 0.00015417 0.0033475 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 1 0 1 1 0 1 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 0 1 1 1 1 1 0 1 0 1 0 1 0 1 0 1 1 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 Deletion Peak 33 13q21.31 chr13:57458876-69271491(probes 1146326:1151864) chr13:64106819-64946697(probes 1149796:1149804) chr13:64106979-64947752(probes 1149797:1149805) 0.019792 0.16727 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 0 0 1 0 0 1 0 0 0 1 1 1 1 0 0 1 0 1 1 0 1 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 1 1 0 1 0 1 0 1 1 0 1 1 0 0 0 1 0 1 0 1 0 1 1 0 1 1 1 1 0 0 1 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 Deletion Peak 34 14q23.3 chr14:66963153-67658112(probes 1205922:1206138) chr14:66970921-67652098(probes 1205924:1206134) chr14:67363203-67379014(probes 1206030:1206031) 0.1651 0.16727 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 Deletion Peak 35 15q11.2 chr15:1-31198928(probes 1229483:1232171) chr15:25576904-25691367(probes 1230355:1230399) chr15:1-26989200(probes 1229483:1231366) 0.035837 0.035706 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 1 1 0 1 1 0 1 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 0 1 1 0 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 Deletion Peak 36 16p13.3 chr16:1-1758773(probes 1273701:1273934) chr16:1-798657(probes 1273701:1273727) chr16:1-1836254(probes 1273701:1273953) 0.012791 0.013118 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 1 1 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 1 0 1 1 0 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 1 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 1 0 1 0 1 0 0 1 1 1 1 1 1 1 1 1 0 0 1 1 1 0 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 Deletion Peak 37 16q23.1 chr16:78098006-79031486(probes 1306668:1307415) chr16:78129058-79247026(probes 1306699:1307701) chr16:78407454-79144157(probes 1306942:1307561) 5.3932e-79 5.3932e-79 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 1 0 1 1 1 0 0 1 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 1 0 0 1 0 1 1 1 0 1 1 1 1 0 1 1 1 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 Deletion Peak 38 17p12 chr17:11060240-25626166(probes 1319384:1323850) chr17:11921739-12048275(probes 1320055:1320120) chr17:11989714-11997691(probes 1320088:1320089) 0.074408 0.07459 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 1 1 1 1 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 1 0 1 0 1 0 1 0 1 0 1 1 0 1 0 1 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 1 0 1 1 1 0 1 1 0 1 1 0 0 1 1 0 1 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 1 1 Deletion Peak 39 17q25.3 chr17:80604514-80902410(probes 1350731:1350882) chr17:80786416-80809451(probes 1350818:1350826) chr17:79857921-81195210(probes 1350529:1350898) 0.0022668 0.0022402 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 Deletion Peak 40 18p11.23 chr18:2802589-12313664(probes 1351748:1357953) chr18:7226861-7303200(probes 1354395:1354438) chr18:7034933-7556207(probes 1354257:1354634) 0.10154 0.10368 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 1 0 1 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 Deletion Peak 41 18q12.2 chr18:36593175-39537209(probes 1369961:1371660) chr18:36783539-37388942(probes 1370051:1370305) chr18:36811401-37425662(probes 1370065:1370322) 3.8012e-06 0.0086708 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 0 0 0 1 1 1 1 1 0 0 0 1 0 1 0 0 1 0 1 0 1 1 0 1 0 0 1 1 0 0 0 1 1 0 1 1 0 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 0 0 0 0 1 1 0 1 0 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 1 0 1 0 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 1 0 1 1 0 1 1 0 1 1 1 1 1 0 0 0 0 1 1 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 1 1 1 0 1 1 0 0 1 0 1 1 0 1 1 1 1 1 0 1 0 0 1 1 Deletion Peak 42 18q21.2 chr18:48472083-48650073(probes 1377305:1377469) chr18:48491525-48616860(probes 1377308:1377463) chr18:41667345-78077248(probes 1372725:1393301) 1.479e-16 7.1792e-12 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 0 1 1 1 0 1 1 0 0 0 1 0 1 0 1 1 0 1 0 1 1 0 1 0 0 1 1 0 0 0 1 1 0 1 1 0 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 0 1 0 0 1 1 0 1 0 1 1 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 0 0 1 0 1 1 0 0 0 1 1 0 0 1 1 1 1 1 0 0 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 0 1 0 1 1 1 1 0 1 1 0 0 0 0 1 1 0 1 1 1 1 1 1 1 0 0 1 1 Deletion Peak 43 18q22.3 chr18:56469085-78077248(probes 1382296:1393301) chr18:71410441-71412692(probes 1389676:1389677) chr18:41667345-78077248(probes 1372725:1393301) 1.0131e-05 0.045006 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 1 0 0 1 1 0 1 1 0 1 0 1 0 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 0 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 0 1 1 0 0 1 1 1 1 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 1 1 1 1 0 0 0 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 0 0 0 1 1 0 1 0 0 1 1 1 1 0 1 0 0 0 1 0 1 1 1 1 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 Deletion Peak 44 19p13.3 chr19:1-2241326(probes 1393302:1393677) chr19:1107036-1186532(probes 1393449:1393462) chr19:1-9515212(probes 1393302:1396266) 8.6035e-06 8.2657e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 0 1 1 0 1 0 0 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 1 1 0 1 1 0 0 1 0 1 1 0 0 1 1 1 1 0 1 1 0 0 0 1 1 1 0 1 0 1 0 1 1 0 0 1 0 0 1 0 1 1 0 1 0 1 0 1 0 1 1 1 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 0 1 0 1 1 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 1 0 1 0 1 0 1 1 Deletion Peak 45 20p12.1 chr20:14301156-16252980(probes 1425732:1426896) chr20:13965126-16036135(probes 1425567:1426681) chr20:15467744-15471214(probes 1426125:1426126) 7.3239e-07 6.9949e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 1 1 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 Deletion Peak 46 21q21.1 chr21:1-26760449(probes 1454008:1460937) chr21:22367376-22918619(probes 1458429:1458802) chr21:1-25531657(probes 1454008:1460065) 0.00084599 0.0033475 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 1 0 0 0 1 0 0 1 0 1 1 0 1 1 1 0 1 0 1 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 0 0 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 1 0 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 0 0 1 1 0 1 1 0 0 1 0 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 1 1 1 0 1 1 0 1 0 1 1 1 0 1 0 1 1 1 0 0 0 0 1 1 0 1 1 1 0 1 1 1 0 1 1 0 1 1 1 0 0 1 0 0 0 1 1 0 1 0 1 1 Deletion Peak 47 21q22.12 chr21:36102470-37096497(probes 1467039:1467834) chr21:36156550-37358828(probes 1467074:1468014) chr21:36749233-36753667(probes 1467545:1467546) 0.00011709 0.00084863 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 1 1 0 0 1 0 0 1 0 1 1 0 1 1 1 0 1 0 1 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 1 0 1 1 1 0 1 1 1 0 1 1 0 1 1 0 0 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 1 0 1 1 1 0 1 1 1 0 0 0 1 1 1 0 1 1 1 1 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 1 1 1 0 1 1 1 1 0 1 1 1 0 1 0 1 1 1 0 0 0 0 1 1 0 1 1 1 0 1 1 1 0 1 1 0 1 1 1 0 1 1 0 0 1 1 1 0 1 0 1 1 Deletion Peak 48 22q11.1 chr22:1-18218209(probes 1474406:1474873) chr22:1-17841067(probes 1474406:1474648) chr22:1-18115276(probes 1474406:1474808) 0.015552 0.015552 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 1 0 1 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 1 0 1 0 1 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 1 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 1 0 1 0 0 1 0 1 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 Deletion Peak 49 Xp21.1 chrX:32117084-32611359(probes 1504126:1504431) chrX:30870233-34033668(probes 1503467:1504687) chrX:32059923-32063450(probes 1504078:1504079) 8.658e-37 1.1207e-35 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 0 0 1 0 1 1 0 1 1 1 0 1 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 1 0 1 1 1 0 0 0 Deletion Peak 50 Xp11.3 chrX:44702452-45008304(probes 1509418:1509540) chrX:44729401-44977416(probes 1509428:1509527) chrX:44759400-44947646(probes 1509436:1509517) 1.0788e-09 9.9334e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 0 0 1 0 1 1 0 0 0 1 1 1 0 1 0 1 0 1 1 1 1 1 1 0 1 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 1 1 1 1 1 0 0 1 0 0 1 0 1 0 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 1 1 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 1 1 0 1 1 1 0 0 0 Deletion Peak 51 Xq11.2 chrX:62995064-64711702(probes 1514728:1515387) chrX:63397172-63430818(probes 1514872:1514878) chrX:63285749-63504463(probes 1514826:1514907) 0.035706 0.07951 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 Deletion Peak 52 Xq21.33 chrX:96134519-96599519(probes 1527016:1527296) chrX:95939207-96865979(probes 1526913:1527379) chrX:96328683-96332854(probes 1527147:1527148) 0.00065553 0.0010475 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 Amplification Peak 1 - CN values 1p34.2 chr1:40264205-40567215(probes 19359:19527) chr1:40381292-40408279(probes 19417:19432) chr1:39568931-41667537(probes 19058:20039) 0.0024624 0.0024624 Actual Copy Change Given -0.049289 -0.28478 -0.34687 -0.084793 -0.11743 0.061794 -0.15362 0.44528 -0.20772 0.020623 -0.22318 -0.15797 0.0020763 -0.29898 -0.55186 0.04943 0.20763 0.045309 0.066229 -0.2319 -0.46855 -0.0012906 -0.14772 0.1936 0.0084743 0.070386 0.07412 -0.043059 -0.00078456 0.31338 0.058509 -0.0059522 0.48733 0 -0.3529 0.0020805 0 0.0012481 1.0042 0.026935 -0.02637 -0.48033 -0.091155 0.11096 -0.041431 0.020343 0 0.032471 -0.33017 -0.045093 -0.0098185 -0.20124 -0.1975 -0.23745 -0.31984 0.034751 0.019525 -0.023445 0.34875 0.1133 -0.038442 0.027919 2.1399 -0.046583 0.042874 -0.21386 -0.11072 1.0163 -0.23618 0.080106 -0.011872 -0.57255 0.00034525 0.34746 -0.76775 0.2236 0.9777 0.3669 0.30314 -0.11632 -0.17183 0.0030522 -0.52256 0.069404 0.13465 0.0034687 -0.12551 0 -0.064177 0.26028 -0.095912 -0.024262 0.075367 -0.097232 0.2369 -0.090626 -0.43193 0.25121 0 0.0083351 -0.012576 -0.0076101 -0.12434 0.73885 -0.03054 -0.0018893 3.6569 0.1428 -0.01409 0.049398 -0.091155 -0.059313 -0.0031859 0.014437 -0.042183 -0.011018 3.6569 0.036653 -0.0083005 -0.047124 -0.23165 -0.52757 0.051349 -0.48169 -0.0035747 2.5419 -0.48175 -0.46653 -0.027845 -0.077745 0.2627 0.14522 -0.50139 -0.048072 -0.03885 0.038347 -0.024935 1.1799 -0.20859 -0.17246 -0.0022168 -0.037408 0.25013 0.17935 0.27868 0.012097 0.050392 -0.43843 -0.53144 0.27474 0 -0.034495 -0.52183 0.024689 3.6569 -0.37718 -0.0047079 -0.47828 -0.14258 0.041633 3.6569 0.57344 -0.60931 -0.10749 -0.014228 -0.27111 1.1549 0.0282 0.016985 0.042874 -0.017666 -0.023018 0.38816 -0.02449 -0.023018 -0.010232 0.59629 0.0079175 -0.45854 0.003443 0.23334 -0.18537 0.034254 0.56543 Amplification Peak 2 - CN values 1q23.3 chr1:120523956-171983088(probes 67527:81298) chr1:161286722-161327096(probes 73577:73594) chr1:158852682-162504245(probes 72083:74320) 0.0022446 0.13568 Actual Copy Change Given 0 0.92472 0.07671 0.64194 0.087534 0.05637 1.4176 0.44544 0.28478 1.7997 0.055943 0.29931 0.0020763 -0.29898 0.4832 0.17144 0.027778 -0.010068 0.43479 0.51054 0.86672 -0.0012906 0.29072 0.29183 0.57326 0.56276 1.4295 0.0058309 -0.00078456 0.38502 0.10964 -0.0059522 0.50012 3.6569 0.14221 -0.0033243 0.72546 -0.0021423 0.020763 -0.0123 0.057511 -0.41729 0.36297 0.14995 -0.0067813 0.020343 0 0 0.48113 -0.051856 -0.0098185 0.089272 -0.1975 0.021398 0.018663 0.70881 0.83376 0.85737 0.34875 1.0913 -0.038442 0.7336 1.119 0 0.068522 0.44028 -0.00041585 0.058937 0.55584 0.087906 0.0039449 0.59106 0.00034525 0.27001 0.766 0.20748 0.16205 1.534 0.24171 0.085371 0.5617 -0.0013858 0.5156 0.069404 0.13717 0.0041632 0.49614 -0.0077482 0.0049969 0.23256 -0.095912 -0.10368 0.10264 -0.021235 0.2369 -0.090626 0.42469 1.6229 0.7708 0.0022193 -0.37482 0.0015255 0.010564 0.63951 0.67215 1.412 0.0871 -0.0091402 0.044263 0 0.37241 0.23132 0.004719 0.014437 0 -0.0072298 0.1486 0.70513 0.39363 0.38783 0.35381 0.046333 0.046094 0.43389 -0.0018931 0.086088 0.44198 0.42435 0.30857 0.77233 0.79995 0.10176 1.1135 0.2523 0.017963 0.038347 -0.076278 1.9177 -0.13891 -0.094064 0.83608 -0.037408 0.43127 0.18253 0.28469 0.012097 0.26388 0.078438 -0.53144 0.27474 -0.018952 1.6634 0.34145 0 0.22299 0.10588 -0.0047079 0.097542 0.01419 0.72206 0.019223 0.16865 -0.14806 -0.013677 -0.023292 0.24373 0.3724 0.0282 -0.0008316 0.031718 -0.006505 0 0.022892 -0.35103 -0.011611 0.25199 0.78808 0.0079175 0.37611 -0.031038 0.21177 0.108 0.28548 0.44257 Amplification Peak 3 - CN values 1q42.3 chr1:234915915-235019265(probes 120649:120702) chr1:234940120-234987284(probes 120653:120687) chr1:234644649-235527646(probes 120471:120905) 8.2636e-05 0.00096792 Actual Copy Change Given 0.46055 0.43277 0.084209 -0.0069195 -0.032723 -0.096521 1.5039 3.6569 0.13835 0.034517 0.055943 0.3669 -0.0037382 0.076058 0.48979 0.26608 0.027778 0.35723 0.43022 0.93162 -0.14554 -0.0012906 0.67215 0.26923 0.12925 0.56276 1.4295 0.0058309 -0.00078456 0.38089 0.11389 0.0091705 0.30132 0.023566 0.30937 -0.018765 0.20947 -0.0033243 1.1188 0.018523 0.059181 0.07484 0.36297 0.14995 -0.012187 0.020343 0 0 0.47271 0.046559 -0.0018954 0.089272 -0.1975 0.69933 0.015308 0.65833 0.021626 -0.81664 0.99279 1.0913 -0.039665 0.69447 0.5054 0 0.086377 0.44892 -0.00041585 0.053237 0.57398 0.087906 0.0039449 0.56746 0.00034525 0.27001 0.75748 0.18495 0.16205 2.9961 0.24295 0.085371 0.5617 0.50411 0.020063 0.069404 0.14147 0.0041632 0.47753 -0.0077482 0.03214 0.058795 -0.095912 -0.10906 0.10264 1.1054 0.5433 0.15453 3.153 1.1439 0.018663 0.00458 -0.3904 0.0066653 0.036935 0.45647 0.68413 1.412 0.30234 -0.0083051 -0.87838 0.010906 0.29915 0.28548 -0.0039401 0.014437 -0.038712 0.61304 0.12659 0.68477 1.1826 0.36901 0.25872 0.025538 0.029005 0.84415 0.70186 -0.025416 0.44748 0.58184 0.49338 0.83589 0.34962 0.10176 1.7545 0.27096 0.017963 0.038347 -0.0037395 0.035665 -0.13891 1.5443 0.81981 -0.01354 0.43127 0.22068 1.741 0.012097 0.80792 0.065799 -0.53144 0.27474 -0.045819 -0.35658 0.34145 -0.0012473 0.15889 0.19682 -0.0088049 0.10118 0.01419 0.056655 0.05523 -0.056577 -0.13368 -0.013677 -0.43268 0.20656 0.17483 0.0282 0.86156 2.4196 0.44308 0 0.033408 0.046584 0.35104 0.9017 0.16201 -0.01037 0.37611 0.0036053 0.21177 0.13254 0.66217 0.43193 Amplification Peak 4 - CN values 2q14.2 chr2:117471735-123226137(probes 189653:192811) chr2:122268229-122371437(probes 192241:192274) chr2:117937520-122779093(probes 189656:192492) 0.0043633 0.044171 Actual Copy Change Given 0.012934 0.036794 0.041175 -0.021921 0.016565 0.03265 0.36011 0.35039 -0.038986 -0.0078863 0.0051359 0.037782 0.50116 -0.0068253 0.92919 -0.096572 0.015308 0.48875 -0.14232 -0.047124 0.095363 0.0019418 -0.34664 0.0020805 -0.14747 0.2708 -0.00055507 -0.0024938 -0.00023018 -0.062629 0.37183 -0.0018014 -0.064994 1.9862 0.037641 0.018663 -0.011473 0.0015255 0.012376 0.0114 0.015028 0 0.79529 0.10089 -0.0015243 -0.005261 0.021603 0.00018643 0.082741 0.016409 0.25824 0.16145 0.096816 0.071104 0.047836 0.45649 0.0039076 0.027399 0.63989 -0.013815 0.14622 0.0049946 2.9236 0.0068044 -0.12862 -0.044215 0 -0.0099565 0.73625 -0.063761 0.017133 0.40501 -0.00020928 0.17784 0.0077622 -0.012713 -0.29851 0.23272 0.041458 -0.019995 0.01447 -0.60264 0.026501 -0.14436 0.095944 0.00027728 0 0.031999 0.45786 0.081721 -0.098023 -0.049476 0.3198 -0.013127 0.016006 -0.06424 0.33018 -0.20734 0.055658 -0.0018014 -0.038578 0.2456 0.1583 0 0.035524 -0.024884 0.25511 2.5353 -0.954 -0.00044698 1.4259 0.029044 -0.010094 0 0.33698 0.0092131 -0.017666 2.744 0.013353 -0.01409 3.2281 0.43834 0.041986 0.24607 -0.31908 0.33351 0.00041593 0.49096 0.075559 2.0429 0.40811 0.062937 2.6529 0.1595 0.00458 0.0051359 0.26985 -0.043865 0.10869 0.22549 0.69858 0.10482 -0.25551 0.12152 0.067661 0.012376 -0.0012473 0.072235 0.024969 0.25824 0.039144 0.013213 0.45122 -0.33941 0.62588 0.38303 0.67771 0.026092 0.0029133 0.39978 0.24156 -0.0066432 0.020471 0.026233 0.076998 -0.010784 0.19969 1.8793 -0.072675 -0.20212 0.40761 0.010777 -0.048207 -0.0041447 0.010285 0.21514 0.56947 -0.0011087 -0.021235 0.10833 -0.046632 0.65125 0.29772 0 Amplification Peak 5 - CN values 2q31.1 chr2:173028657-173414076(probes 219859:220155) chr2:173050176-173071269(probes 219868:219879) chr2:173036820-173415559(probes 219860:220157) 0.034927 0.18371 Actual Copy Change Given 0.07096 0.036794 0.041175 0.73076 0.016565 0.03265 0.38733 0.45173 -0.038986 0.01433 0.013772 0.066658 0.5048 0.0416 -0.070804 -0.1316 0.015308 1.1835 -0.13549 -0.15707 0.10453 0.0019418 0.015866 0.013911 -0.14747 0.2708 0.033126 0.012237 -0.00023018 0.43737 0.36904 0.013911 -0.064994 0.062937 0.037641 0.032913 -0.056712 -0.0023553 0.031295 -0.0049844 0.015028 0 -0.027261 0.12845 0.0002869 -0.005261 0.042166 -0.010323 -0.18999 0.15711 0.29803 0 0.072684 0.071104 0.057796 0.51647 -0.0066211 0.027399 0.66197 -0.013815 0.15218 -0.00027724 1.1532 0.0068044 -0.12862 -0.044215 0 0.019923 -0.029721 0.81934 0.017133 2.456 -0.00020928 0.21699 -0.014641 0.03031 -0.29851 0.26797 0.035947 0.0061145 0.01447 0.14831 -0.49736 -0.12886 0.092605 0.0063871 0.01401 0.031999 0.0079175 0.081721 -0.098023 0.030451 0.3145 0.06494 0 -0.037626 0.37759 -0.20794 0.060079 0.00010281 -0.0033243 0.34974 0.19286 -0.047709 0.11814 -0.024884 0.36182 -4.6421e-06 -0.90837 0.79917 0.36805 0.011121 0 0.018663 0.33698 0.0025393 -0.017941 -0.17967 0.04344 0.05637 3.6569 0.46331 -0.56806 0.16355 -0.29396 0.027158 0.042449 -0.2005 0.099433 0.44765 0.5917 -0.027639 0.17427 0.1595 0.024268 -0.019863 0.26985 0 0.12749 0.24716 0.73986 -0.011979 0.32319 0.17769 0.94445 0.012376 0.0069435 -0.39129 -0.52971 0.25824 0.070909 0.013213 0.81006 -0.013677 0.3799 0.38419 2.1293 0.026092 0.0029133 0.39978 0.28533 0 3.6569 0.026233 0.18082 0.41496 0.15594 0.00597 1.3506 -0.18861 0.40761 0.0030522 -0.037762 0.02226 0.018663 1.2923 0.61747 0.018943 0.0023581 0.0056896 -0.02562 0.67154 -0.25322 0 Amplification Peak 6 - CN values 3q26.2 chr3:169464943-169746250(probes 351007:351183) chr3:169486733-169497675(probes 351014:351016) chr3:136214597-198022430(probes 334079:365353) 2.8915e-20 2.8915e-20 Actual Copy Change Given 0.048972 0.47152 3.6369 0.72716 1.1606 0.31065 -0.12648 0.02539 0.75643 1.9895 0.9777 0.26137 0.54364 0.90512 0.66549 0.12432 1.0934 0.34018 0.37331 1.5779 0.6554 0 0.95488 0.99571 0.58055 0.41329 1.6596 0.69615 0.021511 1.3503 0.82236 1.3008 -0.025622 2.2419 0.18753 0.076998 1.163 -0.0020767 0.65332 -0.31137 0.00097064 0.34925 0.024548 0.15263 -0.0033243 0.048404 -0.064556 0.96562 0.9808 -0.015879 0.45632 0.096537 0.60684 -0.065179 0.024127 -0.44306 -0.017644 0.020747 1.7249 0.6594 0.19558 1.3652 0.68608 0.46776 0.080312 0.053304 0.61324 0.42519 -0.61076 3.6569 -0.0057548 0.43571 0 -0.080752 2.6464 -0.16967 0.064082 0.65259 0.70701 0.14118 -0.15452 0.023706 0.57255 0.085966 0.34177 0.00083195 0.40994 0.081427 0.51194 0.27426 0.19482 0.03863 0.9302 0.058795 0.97564 0.43125 1.4438 0.27584 0.82725 0.54618 0.42625 0.20076 0.79549 0.54236 0.047374 0.72301 0.70326 0.014465 2.6988 0.77714 1.2136 0.83595 1.966 0.38303 0.77146 0.60148 1.2784 1.9125 0.83766 2.0843 3.6569 2.0494 0.54459 2.6251 1.1566 1.7526 1.7586 1.2632 0.58992 1.3849 0.45956 0.47101 1.2012 0.2877 0.061937 1.5067 0.035877 0.62606 1.2374 0.31698 0 0.0077783 0.094648 0.23024 0.28501 0.0084743 -0.011887 0.1022 0.047552 0.34096 -0.33102 0.038913 1.3764 -0.028494 3.0602 0.088258 0.015447 1.5905 0.28074 1.8493 0.38403 0.8298 1.7043 -0.035733 1.0413 1.7172 0.23581 1.323 0.33513 0.28675 0.0062481 0.99571 2.5015 1.3269 1.0938 -0.60649 0.75676 0.72934 1.3816 0.1607 0.062651 2.4638 0.035665 0.1625 Amplification Peak 7 - CN values 4q13.3 chr4:73135093-77631886(probes 404337:407040) chr4:74110050-74158211(probes 404913:404921) chr4:73906111-74164821(probes 404833:404924) 0.11705 0.11705 Actual Copy Change Given -0.43148 -0.4097 -0.38403 0.022865 -0.086651 -0.34469 -0.26354 -0.46855 -0.13471 -0.5065 -0.20685 -0.065179 -0.0034669 -0.29035 -0.47533 -0.14772 0.20121 0.71757 -0.17525 -0.080807 -0.47025 0.0027745 0.37364 0.0024969 -0.24958 0.45615 3.6569 0.017963 0 -0.45854 -0.084926 0.024829 0.27663 1.7513 -0.27275 -0.0059522 -0.053881 0.0044411 -0.53287 0 -0.039937 -0.55617 -0.027124 -0.2201 -0.0062286 -0.024577 -0.17454 -0.027351 -0.084262 0.1595 0.44291 -0.17474 -0.20361 0.040468 -0.31704 0.060794 -0.014894 0.019066 0.02566 0.82588 0.11418 0 0.017264 -0.63225 -0.037218 -0.32289 -0.011799 -0.30839 -0.54834 -0.39357 -0.045441 -0.56958 0.00015617 -0.072675 -0.23545 -0.70487 0 0.2548 -0.046312 -0.43268 -0.2066 0.019503 -0.51373 0.046723 -0.28156 0 0.23117 -0.01904 1.434 -0.2005 -0.42865 0.3743 -0.32007 -0.56346 0.11414 -0.54421 -0.43706 -0.19362 -0.69251 -0.0091286 0.43125 -0.022469 2.5878 -0.017985 -0.73923 -0.050633 0.12918 0.49977 0.055773 -0.40612 0.018943 -0.10697 -0.009108 0.014609 -0.32013 0.11437 0.60322 -0.51794 -0.061348 -0.67288 -0.23106 0.037359 0.067909 -0.45329 0.46494 0.20656 -0.44884 -0.50951 0.07671 0.90633 -0.473 0.047268 0.34686 -0.36147 0.037217 -0.078278 0.24684 -0.51208 -0.39157 -0.13794 -0.013503 -0.20908 -0.21774 -0.61412 -0.13678 1.7816 -0.021373 -0.40196 -0.55917 -0.2474 -0.39479 0.42183 -0.48523 -0.021373 0.49874 -0.4119 -0.01849 -0.45685 -0.1067 0.65864 -0.37042 -0.26853 0.021323 -0.11155 -0.0067658 0.34844 0.0090312 -0.016841 0.072253 -0.48355 0.012097 0.46844 3.6569 0.010241 -0.33364 0.12373 -0.14171 -0.020961 0.018943 -0.18156 0.54647 -0.061592 -0.26396 -0.028355 Amplification Peak 8 - CN values 5p15.33 chr5:1-938697(probes 467486:467493) chr5:1-935090(probes 467486:467492) chr5:1-1893926(probes 467486:467613) 0.00042289 0.00042289 Actual Copy Change Given 0.021884 0.011261 0.14622 -0.78041 -0.15924 1.3366 -0.513 -0.53236 -0.10181 0.013074 0.30362 -0.085324 -0.0078259 0.6756 -0.5613 0.08565 -0.039258 0.20827 0.47856 0.26577 -0.51089 0.0011093 1.7022 -0.32368 1.1008 0.60792 -0.054286 0.0041632 -0.0085297 0.42873 1.1429 0.018803 -0.07508 0.60756 -0.39997 0.66253 1.9583 0.035242 0.7027 -0.016017 -0.0034627 0.041175 0.46553 1.118 0.0070826 0.061157 0.14028 -0.42556 0.20167 0.4158 2.3223 0.10541 -0.18898 -0.15962 -0.33272 0.46246 1.5757 0.046542 1.1041 -0.054825 -0.23178 0.15397 -0.049424 1.5208 -0.11939 0.34687 0.60575 3.6569 0.082043 1.442 0.0063076 0.33147 -0.010003 1.7046 -0.017941 0.27458 -0.10355 0.2584 -0.20318 0.76594 0.66604 0.00458 0.611 0.9584 0.049398 -0.020138 -0.68487 -0.066922 -0.45125 0.5142 0.41999 0.033972 0.65075 -0.01409 0.27426 0.48733 0.62224 -0.1665 0.056228 0 0.47272 0.08739 0.76159 0.28813 1.3636 -0.91055 0.14117 0.24871 0.91497 0.41513 -0.035721 0.049824 0.5865 0.61387 0.96154 0.74429 -0.78032 0.82451 1.9079 1.2143 1.2452 1.4735 1.4588 1.8538 0.75443 1.5512 0.14253 0.92229 0.53626 0.90553 -0.016292 -0.029745 0.74714 1.0248 -0.3432 2.9109 -0.024251 -0.1088 -0.077279 0.27048 0.72018 -0.06084 0.28391 -0.37954 0.25324 -0.34044 3.6569 -0.53165 -0.54377 -0.25805 0.55383 -0.0020784 0.36068 0.0022193 0.18616 0.37611 -0.025375 0.057796 -0.44771 0.50689 0.83058 -0.27547 -0.13691 0.033831 0.46913 -0.04983 0.089766 1.2727 0.58488 2.7106 -0.34274 0.92919 0.090865 9.5308e-05 1.6273 -0.64142 1.2133 0.018383 0.80422 0.28209 1.5118 0.93299 1.9307 0.25652 Amplification Peak 9 - CN values 6p21.1 chr6:43657128-43847055(probes 593160:593260) chr6:43733839-43756051(probes 593192:593198) chr6:38635094-47619510(probes 589863:595522) 9.6697e-14 9.6697e-14 Actual Copy Change Given 0.46861 0.048546 0.41546 0.68403 2.4027 0.026514 3.6569 1.2121 0.12653 0.52188 0.035163 0 -0.012166 -0.28857 -0.061949 0.032281 -0.0016629 0.059964 0 0.0051359 1.0973 0.0012481 -0.39299 0 0.027497 -0.20871 -0.007557 0.015447 0.0014339 0.49044 -0.053341 0.59458 0.8204 0.59152 3.6569 0.11917 -0.034768 -0.0022168 0.029888 0.029466 1.5475 -0.49267 0 0.065656 0.00041593 0.064511 -0.18169 0.15439 -0.078411 0 -0.47459 0.07815 0.097202 0 -0.31529 0.029184 -0.0041325 0.044132 0.33301 3.6569 0 2.5935 2.9096 -0.26347 0.84494 0 0.010162 0.78022 0.057368 1.9333 0.0061002 0.44484 0.0019846 3.6569 0.016146 0.35758 0.29294 0.71227 0.23566 1.5257 1.5988 1.7934 -0.52981 -0.15565 -0.004257 -0.0024938 0.46878 0.28105 -0.40462 0.023538 0.23861 -0.034359 0.64268 -0.030131 0.10237 1.4786 0.3153 0.20671 -0.034904 -0.45907 0.47084 -0.0011087 -0.044009 1.0207 0.0095883 0.74861 -0.24618 0.14072 0.031081 0.011958 0.39413 -0.099209 -0.012438 0.011958 0.0051999 0.0061515 2.1385 0.51355 0.017124 -0.0095426 0.19347 -0.0062286 0.054622 0.3669 0.1216 -0.035721 -0.30928 -0.22896 -0.63108 0.35365 0.0029133 -0.018078 -0.12109 0.39313 0.033127 0.015587 -0.014366 0.12579 0.74984 0.090549 0.85363 0.37801 0.61953 -0.13645 2.535 0.0019418 2.8135 3.6569 0.049398 -0.27578 -0.012488 2.6178 -0.069734 -0.0016629 3.6569 0.034818 0.0023581 -0.39051 1.8914 0 0.039195 0.12815 -0.1329 0 0.015866 -0.36499 0.057083 -0.0020431 -0.46035 0.023005 -0.0089906 -0.0123 -0.076678 0.020999 0.346 0.030451 0.21326 0.036653 0.021744 0.092748 0.23519 0.45832 0.072827 -0.10972 Amplification Peak 10 - CN values 6q23.3 chr6:135500891-135715565(probes 642666:642883) chr6:135507467-135642755(probes 642678:642835) chr6:135501356-135721284(probes 642667:642885) 0.20377 0.20377 Actual Copy Change Given -0.42418 0.50429 0.48509 0.024689 -0.36929 0.091155 0.15771 0.045424 0.44647 0.022304 0.040044 -0.049289 -0.012166 -0.28857 -0.48792 0.051103 -0.0016629 -0.089144 0 0.027497 1.1553 0.0012481 -0.034086 0.011818 0.024408 0.03543 0.017683 0.016565 0.0014339 -0.46344 -0.40506 0.018663 1.1936 -0.0066432 0.35757 0.11917 -0.016979 -0.0008316 -0.70847 1.265 0.031718 -0.016704 -0.0084385 -0.20336 -0.005814 0.064511 -0.17866 0.16946 -0.078411 -0.0092666 0.0041632 -0.48102 0.097202 0.057796 0.37726 0.010285 0.0034909 0.070226 -0.016165 -0.010337 -0.026714 -0.011198 0.0044411 -0.23133 -0.086916 -0.043266 0.020763 3.6569 0.10235 0.1052 0.054437 -0.052915 -0.0053315 -0.31471 0.016146 3.6569 0.29294 0.94793 0.17347 0.042455 0.22095 0.35594 -0.52981 -0.14809 -0.10184 -0.0024938 -0.027808 0.23303 0.033549 -0.29029 0.23861 -0.13018 -0.30345 0.026935 0.27663 0.68515 -0.27846 0.28612 0.072109 0.0052749 0.099579 -0.00097017 -0.48218 0.40189 0.0069435 0.76792 -0.21491 -0.12294 0.016539 -0.26721 -0.40506 -0.20453 -0.0029091 -0.28845 -0.0075451 0.0061515 -0.027945 -0.28251 -0.36725 0.5738 0.080601 -0.45939 0.48092 -0.044909 0.087469 0.48337 -0.018353 -0.22896 0.057511 0.8015 -0.0031859 -0.018078 -0.089529 0.011818 0.77099 0.013492 -0.014366 3.6569 0.039729 0.055658 0.82627 0.37801 -0.24077 -0.029448 -0.076545 0.010272 0.20488 0.086811 -0.52369 -0.24448 0.00087493 0.031295 -0.49955 -0.037218 -0.58284 -0.0054939 -0.0020784 -0.39051 -0.005334 0.010564 0.083198 -0.29461 -0.15919 -0.0085766 0.33124 -0.10303 -0.10072 0.018523 0.90009 0.09333 -0.0089906 -0.0123 0.40928 0.020999 0.35594 0.013266 -0.18537 0.03214 0.010424 -0.198 0.23334 -0.014541 0.054803 0.40594 Amplification Peak 11 - CN values 7p11.2 chr7:54942676-55390810(probes 695618:696088) chr7:55221656-55356531(probes 695959:696074) chr7:53176077-57924998(probes 694567:696703) 6.1735e-13 1.3479e-12 Actual Copy Change Given 1.3097 0.015447 -0.26637 -0.0033243 0.10818 0.5617 0.86275 0.54048 0.57523 0.030451 3.6569 0.68366 -0.0060946 0.075908 0.34986 0.94282 -0.005814 -0.37412 0.41195 0.39928 0.060508 0.0016642 2.2316 0.32221 0.23334 0.2484 0.00069263 0.00097064 0.0024052 0.019923 0.22484 0.028903 -0.087439 0.79491 0.32737 0.2003 -0.66873 -0.00097017 0.020623 0.018103 0.10133 0.43936 -0.2837 0.12344 -0.0038779 -0.00097017 0.22669 0.41134 0.22916 2.2053 0.4424 0.058224 0.68695 0.74404 0.33947 0.98742 -0.0089686 3.6569 0.41394 1.2172 0.15442 0.019643 0.5998 1.1048 0.33658 0.75518 0.10045 0.71283 0.071104 0.17929 0.60132 1.4177 0.015236 0.86433 0 0.273 0.21453 0.22978 0.1158 0.72603 2.0457 0.017824 0.56401 0.24313 0.12093 0.00083195 0.53942 0.069382 0.53064 0.2974 0.22931 0.035353 0.41412 0.55496 0.22407 0.18586 0.27411 -0.71551 0.046133 0.017404 0.387 -0.010094 0.39712 -0.049114 0.77272 3.6569 0.78504 0.39661 3.6569 0.41111 0.39413 3.6569 1.7004 0.040326 0.65411 3.6569 -0.032041 0.11345 1.5344 0.0054139 0.33804 0.5238 0.04652 0.42856 0 3.6569 -0.0004216 0.31932 0.060936 1.2007 0.39346 3.6569 0.34003 0.38244 -0.021235 3.6569 0.78022 0.57576 0.25414 0.79355 0.85898 0.32463 -0.041556 0.099835 0.26875 0.35316 -0.042924 3.6569 0.70382 0.52888 0.42917 0.44494 0.38023 1.8373 0.22777 0.049682 0.74371 0.42251 0.18147 1.2147 0.29787 0.016705 0 0.42873 -0.0076101 0.26608 1.0752 3.6569 0.40984 0.89487 0.44003 0.033127 -0.45061 -0.0057189 0.71547 0.27379 0.37837 0 0.44969 0.073457 -0.22601 0.16261 0.58381 0.13524 Amplification Peak 12 - CN values 7q21.2 chr7:91837002-93854668(probes 709556:710838) chr7:92560001-92610118(probes 710119:710144) chr7:84182369-109072928(probes 706474:718671) 6.0529e-14 8.6198e-14 Actual Copy Change Given -0.42953 2.2439 -0.26637 0 0.076854 -0.25611 -0.23521 3.1626 2.7125 0.041317 0.35806 3.6569 -0.0015285 0.084209 1.2553 -0.14849 -0.005814 0.39632 2.0869 0.042166 0.59684 0.0016642 0.30953 0.99219 -0.21503 0.23442 0.0098663 0.66456 0.0024052 0.019923 0.22484 0.011261 -0.073478 1.4897 0.32737 0.2003 0.52993 -0.0020784 0.72206 0.018103 0.10133 0.43936 0.23674 1.5106 -0.0038779 -0.0090965 0.22669 0.40366 0.22916 0.36526 0 0.058224 0.65026 -0.20336 0.33947 0.96575 -0.0089686 0.059064 2.209 1.2994 0.14757 0.019643 0.67363 0.13806 0.39894 0.75518 2.2354 2.4254 0.071104 0.41021 0.021383 0.42711 0.015236 0.39529 0 0.27093 0.21453 -0.55046 3.6569 0.16026 3.142 -0.58402 0.56828 0.63064 0.12093 0.00083195 0.067805 -0.036401 -0.46738 0.25095 0.22515 0.035353 0.41478 1.1903 0.19099 1.2081 0.27411 0.72622 0.04259 0.012934 1.1956 0.56205 0.87888 0.6089 0.79039 0.35643 -0.20482 2.9273 3.6569 1.9316 0.41236 1.3302 1.1961 0.0098669 0.36468 0.72305 0.56756 0.11345 -0.38011 0.0076392 0.32398 1.0047 0.04652 0.43699 0 0.30202 -0.0004216 0.31932 0.045849 1.3008 0.36995 0.070099 0.32709 -0.047936 -0.6384 -0.014061 0.68738 1.5816 0.58982 -0.13096 -0.013402 0.32463 0.83492 0.1495 -0.05725 0.33254 -0.30498 1.441 0.041175 0.52888 0.42917 0.017963 0.28625 1.2179 0.22777 0.015121 0.74371 0.42251 -0.18584 1.1919 0.29787 0.0282 0 2.3166 1.5067 0.49488 0.98514 0.68193 0.40984 0.022725 0.44003 1.4355 0.40177 1.2645 -0.34308 0.27379 0.37837 0 0.0040132 0.073457 0.30234 0.13565 -0.19687 0.13524 Amplification Peak 13 - CN values 8p23.1 chr8:11355603-12562991(probes 749376:749505) chr8:11384842-12562454(probes 749402:749504) chr8:9793180-12570388(probes 748522:749507) 2.785e-07 3.1574e-06 Actual Copy Change Given 0.35459 -0.38973 0.11062 0.076965 -0.023566 -0.4786 -0.51362 0.25433 3.6569 -0.34676 2.3524 -0.078144 -0.0048935 0.61589 1.011 -0.4055 0.20366 -0.40681 -0.16891 0.092577 -0.51681 0.0011093 -0.11478 -0.012576 -0.13962 -0.18936 0.0049963 -0.71042 0.0042104 0.43226 -0.39569 -0.041702 3.6569 -0.64631 -0.41421 0.27931 -0.69151 -0.0024938 -0.71888 -0.41482 0.41212 -0.52266 3.6569 3.6569 0.63646 0.067232 0.20733 1.4094 0.1646 3.6569 -0.53419 0.082765 -0.51712 -0.20535 0 -0.51801 0.81477 3.6569 0.26042 0.59692 -0.3304 -0.0067813 -0.031632 0.33864 0.00079622 3.6569 0.0030522 0.48492 -0.53754 0.043663 -0.074754 -0.61091 -0.013748 0.11418 -0.30909 -0.69758 -0.029038 0.20947 -0.24107 0.055521 3.6569 0.022164 0.0083351 0.18978 -0.28049 0.53081 0.21345 0.15001 0.66789 -0.12603 -0.45565 0.025671 -0.093403 -0.029721 -0.52399 3.6569 0.17162 -0.26252 -0.73819 -0.45693 -0.034223 0.073546 -0.0696 -0.40399 0.75968 0.4844 -0.2051 0.53906 -0.93842 -0.41421 -0.43355 -0.18207 -0.026304 -0.30604 -0.018839 0.011861 -0.023703 -1.067 -0.39497 -0.01037 -0.92993 -0.0024938 -0.048109 -0.45804 0.038707 -0.038306 0.79374 -0.1499 0.02525 -0.48281 -0.013677 -0.11342 -0.74017 -0.47279 0.016985 -0.7028 -0.39341 -0.23973 0.21414 0.20259 -0.016429 -0.0011087 -0.098935 -0.045228 -0.39553 -0.012005 0.24451 0.037076 -0.51506 0.1746 0.11897 -0.0501 -0.50898 -0.61143 -0.56147 1.8143 0.75586 -0.15298 0.0065262 0.0022193 0.29549 0.282 -0.61104 0.0467 -0.42776 -0.47997 -0.11378 -0.029038 0.036653 -0.5242 -0.089234 -0.51352 -0.91146 -0.71644 -0.36725 0.66039 1.5494 -0.41223 0.036512 -0.040347 -0.12226 -0.63455 -0.57881 3.405 Amplification Peak 14 - CN values 8p11.21 chr8:41721029-42518767(probes 768438:768934) chr8:42236796-42315599(probes 768805:768838) chr8:40836594-47465442(probes 767888:769101) 1.5487e-05 7.6281e-05 Actual Copy Change Given -0.9676 0.080456 0.11062 3.6569 -0.023566 -0.17259 0.97275 0.25433 0.32237 0.14578 -0.0098185 -0.40853 -0.00028143 0.60546 1.011 -0.31879 2.4 -0.40681 -0.16891 1.7371 0.55927 0.0011093 -0.12187 0.32463 -0.13962 -0.18936 0.78813 0 0.0042104 0.43226 -0.38224 -0.041702 0.54576 1.4817 0.52206 0.29851 1.0084 -0.010232 -0.70325 0.045849 -0.050272 1.3912 0.21991 -0.22552 0.63646 0.067232 0.20733 1.4094 0.1646 2.0778 -0.49746 0.085799 0.091748 0.30745 0 -0.4549 0.83495 -0.21826 0.26042 0.77868 0.18117 -0.0067813 -0.065045 0.38684 0.00079622 0.36272 0.0030522 0.48492 0.97028 0.049447 0.077204 -0.48938 -0.00090224 0.27647 -0.30381 0.39845 -0.029038 -0.1526 -0.24107 0.10465 -0.56823 0.0055529 0.0077783 0.23287 0.10009 0.53081 0.28677 0.15001 0.11638 0.12682 0.2584 0.025671 -0.093403 -0.051856 -0.52399 2.1681 0.17162 0.19999 -0.74229 -0.45409 -0.053476 1.1621 -0.0696 0.22926 0.75375 0.57952 -0.25902 0.54788 3.6569 -0.012438 -0.047531 0.53485 2.5605 -0.30604 0.31714 0.011861 0.67011 0.94466 -0.38549 -0.75374 -0.30098 0.0114 0.59867 -0.45804 0.038707 0.36362 0.79374 0.32431 0.051103 1.9058 1.1487 -0.040209 3.6569 0.2032 0.016985 0.057796 -0.39341 -0.0076101 0.21414 0.20259 -0.028355 -0.0011087 -0.074668 -0.029175 0.53643 -0.012005 0.25496 0.039195 -0.51506 0.1746 0.66394 0.88566 3.6569 -0.023566 -0.56147 -0.39475 0.75586 -0.059177 0.17724 -0.030813 0.29549 0.282 0.088113 0.0467 0.07988 0.4777 2.6725 -0.12888 0.47306 0.031014 0.79316 -0.51352 -0.45768 -0.71491 0.37084 -0.0089906 -0.2312 -0.41223 0.032986 0.036792 0.42116 -0.58785 -0.075211 -0.32263 Amplification Peak 15 - CN values 8q24.21 chr8:128702020-128724664(probes 815688:815712) chr8:128710713-128724425(probes 815701:815711) chr8:98923037-146364022(probes 798185:825604) 2.9383e-31 2.9383e-31 Actual Copy Change Given 0.65645 3.6569 0.13362 3.6569 0.46605 3.6569 3.6569 0.23426 0.32237 1.5421 0.87906 0.25355 -0.0062328 0.64506 1.0355 0.47615 0.18313 0.35417 0.63463 0 2.8055 0.0011093 3.6569 0.30574 1.1484 -0.19199 0.75089 2.4778 0.0042104 0.43412 0.19421 1.2274 3.6569 1.1022 2.8375 0.33561 0.99862 2.0412 0.036512 0.49234 1.3931 1.3912 0.21991 -0.2175 0.63482 0.067232 3.4748 1.4671 0.1646 0.67474 2.0206 -0.017254 0.1673 -0.11713 -0.0081624 3.3181 0.84714 3.6569 0.26042 1.4011 0.16655 -0.0067813 1.8536 0.38684 0.59116 0.34315 0.0030522 0.48492 0.53432 -0.40135 0.077204 3.6569 -0.00090224 0.17981 0.072109 0.42105 -0.029038 0.21177 -0.24472 0.35407 3.6569 0.006109 0.029747 0.34849 0.10009 0.53081 0.27411 0.25887 0.81495 0.12682 0.89688 0.025671 -0.055499 0.5539 1.0352 1.0348 0.79588 0.34469 0.81025 0.44477 1.142 1.0853 1.2112 0.9202 1.4629 2.6467 0.46263 0.57701 0.14248 1.5707 1.1815 0.6081 1.5583 3.6569 0.85254 0.01563 1.2925 0.41279 1.1837 0 1.0226 0.58704 0.11063 0.5149 1.3356 0.15831 0.86712 0.64451 0.4424 0.41898 1.0942 -0.040209 1.6193 0.83628 0.026233 0.0558 0.049682 1.6427 0.212 0.27805 2.2146 1.7461 2.8403 -0.069064 0.87229 -0.0062286 1.0453 1.1227 0.067375 0.25887 0.93053 0.88566 0.521 1.7807 -0.10257 0.41028 0.78871 0.1661 0.18631 -0.052261 0.29432 0.28026 0.57398 0.0467 0.46092 0.49545 2.1299 1.5645 0.18859 1.7308 0.84396 -0.0041546 1.0479 1.2659 0.37084 0.0097276 0.17524 0.39579 0 1.1231 0.48992 0.86448 0.097199 1.1026 Amplification Peak 16 - CN values 9p13.3 chr9:35533693-35696801(probes 846710:846783) chr9:35593594-35641858(probes 846740:846751) chr9:35335144-35856591(probes 846622:846848) 0.0054032 0.0054032 Actual Copy Change Given 0.50082 -0.17512 0.43075 -0.034904 0.022444 0.32785 0.029747 -0.47332 -0.39064 0.01447 0.044857 -0.30651 0.0012439 0.06306 0 -0.13096 -0.22552 -0.020524 -0.1827 -0.3933 -0.47818 -0.0030785 -0.30557 -0.014916 -0.25734 -0.3031 0.6926 -0.013815 -0.00091196 -0.48485 -0.38973 -0.64481 0.44494 0.035806 -0.44803 0.41429 -0.027535 0.00055459 0.003554 0.029044 0.094201 0.05983 0.062508 -0.25817 0.010311 0.075128 -0.18433 -0.015006 0.34665 1.416 0.20759 -0.47427 0.072109 -0.26384 0.015028 3.3258 -0.018807 0.011425 -0.64321 1.4878 -0.31926 -0.69866 -0.048478 0.1227 -0.1517 0.034321 0.27001 -0.116 -0.1134 -0.40018 -0.036479 -0.56898 -0.0013179 0.14741 0.037924 -0.2201 -0.11501 0.52048 -0.6385 0.52679 0 -0.014228 0.0033299 0.029769 -0.28406 -0.0044312 -0.13626 -0.058731 -0.46525 -0.4394 0.1649 -0.2319 -0.047666 2.2907 -0.50235 0.35937 0.43682 -0.2196 -0.71995 -0.45469 0.42722 0.3579 -0.49642 -0.23267 -0.027808 -0.0066432 -0.23496 -0.2932 -0.92556 -0.39754 -0.4163 -0.10947 -0.012438 -0.31611 -0.38364 -0.71351 -0.025483 1.6437 -0.36861 -0.011421 -0.31108 -0.53612 -0.61703 -0.41355 -0.73387 0.66549 0.40861 0.25168 0.56632 -0.051856 -0.48176 -0.11373 0.18732 -0.36793 -0.65174 -0.70587 0.22099 -0.010508 -0.065247 0.32753 0.67567 -0.033405 -0.24118 -0.3925 0.077862 -0.11155 3.3576 0.066372 -0.52788 -0.29438 0.003573 -0.0015243 3.6569 -0.61297 -0.55777 -0.40008 0.0022193 0.53327 -0.32554 -0.35774 -0.10132 0.23365 -0.60448 -0.11079 -0.35008 -0.35931 -0.20825 -0.040752 0.39944 0.79258 -0.5162 -0.03749 -0.445 0.38642 -0.0048461 -0.31646 0.15737 -0.72308 -0.4564 -0.22034 -0.017529 1.1566 -0.25189 -0.11704 Amplification Peak 17 - CN values 9q34.3 chr9:140086046-140219867(probes 893037:893039) chr9:140141302-140219854(probes 893038:893038) chr9:140141302-140290845(probes 893038:893041) 0.24147 0.24147 Actual Copy Change Given -0.038881 0.78736 0.046981 -0.10933 -0.06719 0.19619 0.0095883 -0.015879 -0.17272 0.63646 0.044857 0.14102 0.0012439 0.058652 0 -0.24967 -0.21911 -0.037872 -0.09261 -0.21997 -0.0077482 0.0012481 0.61716 -0.027261 -0.256 -0.3031 0.69559 1.1431 -0.0016513 -0.5314 0.27048 -0.060076 0.44172 -0.090843 0.43631 0.0069435 0.98866 0.00013863 0.30825 0.040185 0.084623 0.36684 0.062508 -0.25817 0.055658 0.075128 0.19193 -0.015006 0.060222 0.018943 0.40011 -0.17398 0.072109 -0.26384 0.010328 -0.00013862 0.031599 0.011425 -0.42355 -0.021878 0.35659 0.027919 0.98121 0.06208 -0.23508 0.048471 0.24249 0.37627 0.013353 -0.41942 -0.036479 0.47331 0.005343 0.14222 0.037924 0.24466 -0.053206 0.84751 -0.58147 -0.16408 0 0.035383 0.0033299 0.034342 0.17106 -0.0044312 -0.15024 -0.058731 0.014051 0.20901 0.1649 -0.23692 -0.025893 0.52066 -0.50235 0.27015 0.17685 -0.256 -0.10151 0.43361 1.1439 0.64304 1.9633 -0.25217 -0.035312 1.2094 0.053521 0.13365 -0.92556 -0.36386 0.42704 -0.087447 0.58471 -0.032996 -0.38935 -0.052827 0.66808 0.21207 -0.059538 0.83196 0.22885 -0.043154 0.2532 0.33828 -0.40024 -0.14941 1.0319 -0.34859 0.56263 -0.49039 -0.57753 0.024408 0.18732 0.24778 -0.0023553 0.029184 0.019643 3.6569 -0.065247 -0.15362 0.61716 -0.033405 -0.28665 -0.46547 0.21806 -0.11155 -0.32797 0.055515 0.54171 -0.29438 0.0059197 0.35839 0.35186 0.049824 -0.10959 -0.39074 -0.010587 0.071391 0.058367 -0.28964 -0.14836 0.01419 0.83373 -0.10329 -0.022469 -0.19537 -0.22683 0.89708 0.15666 0.87906 0.50151 0.29692 -0.45083 1.1362 -0.073023 -0.31646 -0.18826 0.73777 0.12307 -0.21837 -0.40937 0.64556 0.19497 -0.11704 Amplification Peak 18 - CN values 11p13 chr11:33149811-35674319(probes 994515:996345) chr11:34490538-34563602(probes 995332:995402) chr11:34218859-35550287(probes 995079:996245) 0.029592 0.084777 Actual Copy Change Given 0.04344 -0.42719 -0.40937 0.66253 0.12903 -0.28881 -0.055303 1.0635 0.40344 -0.52041 -0.086518 -0.052666 -0.0013307 0.078871 0.0029133 -0.14232 0 -0.39361 0.040044 -0.029857 0.079303 -0.005261 0.11668 -0.0038779 -0.025756 -0.23716 -0.0096812 0.0091705 0.00074035 -0.029584 0.25543 -0.022195 0.34648 0.042166 -0.0030475 0 0.49009 -0.0040162 0.02511 -0.40163 -0.041838 -0.058454 0.097979 2.3397 -0.0022168 0.69279 -0.10105 -0.024203 -0.26288 0.57469 -0.053257 0.27609 0.10439 0.042166 -0.32809 0.42788 -0.016883 0.015105 0.19663 0.37809 0.011818 -0.69269 -0.025893 -0.12148 -0.027261 0.71838 0.31049 0.057226 -0.036265 0.13577 -0.018981 -0.57463 0.0027037 -0.31809 0.014888 0.43885 -0.15771 -0.18585 0.56792 0.0070881 -0.015329 1.0042 -0.52757 -0.24811 -0.10289 -0.0045695 0.33853 -0.045093 0.019269 0.09246 0.26844 0.034536 0.2084 2.0599 -0.50453 -0.12226 0.1434 -0.23202 -0.72623 -0.44728 -0.41146 1.0928 -0.19675 1.214 -0.061958 3.6569 -0.20672 -0.15963 -0.93763 0.46058 -0.41487 -0.18307 -0.013712 -0.0088526 -0.36319 0.021086 -0.013402 0.11165 0.38419 2.1374 -0.28465 0.021043 0.043827 1.3115 0.016502 1.7711 0.00027728 0.18828 0.53309 -0.46799 -0.48091 0.0024969 -0.24748 0.19162 0.016845 0.03214 0.24662 0.88246 0.34201 -0.025455 -0.0047079 0.18253 -0.22293 1.0787 0.60684 -0.0095426 0.010944 -0.44515 -0.54007 -0.22379 0.70807 0.015587 -0.077212 -0.0042929 0.19847 -0.41289 -0.027483 -0.48144 0.021043 0.00027728 0 0.26657 1.2436 0.026373 0.54594 -0.31727 -0.16637 -0.76792 0.17422 -0.006505 -0.00027724 -0.0069195 0.040185 -0.0091718 -0.3371 -0.023155 -0.21502 0.01419 -0.46632 -0.04848 -0.39029 -0.043097 0.015688 0.26475 Amplification Peak 19 - CN values 11p13 chr11:1-135006516(probes 973762:1050574) chr11:35244059-35263023(probes 995930:995942) chr11:34218859-35550287(probes 995079:996245) 0.018342 1 Actual Copy Change Given 0.04344 -0.42719 -0.40937 0.019923 0.12903 -0.28881 -0.055303 1.7855 0.40344 -0.52041 -0.086518 -0.052666 -0.0013307 0.078871 0.0029133 -0.14232 0 -0.39361 0.040044 -0.029857 0.079303 -0.005261 0.11668 -0.0038779 -0.025756 -0.23716 -0.0096812 0.0091705 0.00074035 1.1255 0.25543 -0.022195 0.34648 0.042166 -0.0030475 0 0.49009 -0.0040162 0.02511 -0.40163 -0.041838 -0.058454 0.097979 0.1685 -0.0022168 0.036935 -0.10105 -0.024203 -0.26288 0.57469 -0.053257 0.27609 0.10439 0.042166 -0.32809 0.42788 -0.016883 0.015105 0.19663 0.37809 0.011818 -0.69269 -0.025893 -0.12148 -0.027261 0.71838 0.31049 0.057226 -0.036265 0.7058 -0.018981 -0.57463 0.0027037 -0.31809 0.014888 0.012237 -0.15771 -0.18585 0.56792 0.0070881 -0.015329 -0.019589 -0.52757 -0.24811 -0.10289 -0.0045695 0.33853 -0.045093 0.019269 0.09246 0.26844 0.034536 0.2084 2.0599 -0.50453 -0.12226 0.1434 -0.23202 -0.72623 -0.44728 -0.41146 3.6569 -0.19675 1.214 -0.061958 3.6569 -0.20672 -0.15963 -0.93763 0.46058 -0.41487 -0.18307 -0.013712 0.86275 -0.36319 0.021086 -0.013402 0.11165 0.38419 2.1374 -0.28465 0.021043 0.94358 1.3115 0.016502 1.7711 0.00027728 0.18828 0.53309 -0.46799 -0.48091 0.0024969 0.82672 0.19162 0.016845 0.03214 0.24662 0.01433 0.34201 -0.025455 -0.0047079 0.18253 -0.22293 -0.77141 -0.0073339 -0.0095426 0.010944 -0.44515 -0.54007 -0.22379 0.70807 0.015587 -0.077212 -0.0042929 0.19847 -0.41289 -0.027483 -0.48144 0.021043 0.00027728 0 0.26657 1.2436 0.026373 0.54594 -0.31727 0.76025 -0.76792 0.17422 -0.006505 -0.00027724 -0.0069195 0.040185 -0.0091718 -0.3371 -0.023155 -0.21502 0.01419 -0.46632 -0.04848 -0.39029 -0.043097 0.015688 0.26475 Amplification Peak 20 - CN values 11q13.3 chr11:69647998-69671074(probes 1010144:1010153) chr11:69650888-69670716(probes 1010145:1010152) chr11:66096153-77315230(probes 1008740:1014106) 1.2639e-101 1.2639e-101 Actual Copy Change Given -0.066654 0.057939 -0.051451 -0.040345 -0.052936 -0.41251 -0.055303 0.45173 -0.083598 0.03637 -0.086518 -0.094988 -0.0021707 3.6569 0.0029133 3.6569 2.1881 0.0085007 2.583 3.6569 0.079303 -0.005261 -0.083997 3.4095 -0.025756 3.6569 -0.0096812 1.8968 0.00074035 1.704 0.24187 3.6569 0.34648 -0.0058629 0.16911 0 0.54189 0.00055459 -0.69559 0.39396 -0.042245 -0.058454 0.097979 3.0683 -0.010922 -0.012438 -0.10105 -0.024203 3.6569 0.98059 0.3938 0.27609 0.10439 0.11741 0.1939 0.6792 0.0055751 0.015105 3.6569 -0.016154 -0.014228 -0.69269 1.0477 -0.12525 0.41798 0.0047851 2.8703 0.086522 -0.036265 3.5831 -0.018981 3.6569 0.0027037 0.15591 0.019923 1.9025 -0.15771 0.86851 3.6569 0 0.98825 3.6569 -0.058757 1.5461 -0.10289 -0.0045695 0.31471 3.6569 0.13622 0.061222 -0.42003 0.034536 1.1409 1.9746 3.6569 -0.12226 1.6334 -0.2583 3.6569 3.4573 -0.012713 -0.051451 3.6569 0.1677 -0.061958 2.2669 2.504 0.60773 3.6569 2.0951 3.6569 3.6569 3.6569 3.6569 3.6569 3.6569 -0.013402 0.17468 3.6569 -0.051215 3.6569 3.6569 -0.019077 3.3495 3.6569 0.37117 3.443 0.1652 -0.0041546 3.6569 3.6569 1.9277 -0.20756 0.36461 -0.023292 0.03214 0.24662 3.6569 0.34201 -0.025455 -0.0047079 0.18253 -0.22293 3.6569 0.26075 -0.0095426 0.33367 -0.44609 -0.54007 -0.22379 0.70807 -0.37256 -0.077212 -0.0042929 3.1117 0.039195 -0.027483 0.40727 0.021043 3.6569 -0.0092666 0.26657 3.6569 0.026373 3.6569 3.6569 3.6569 1.3207 3.6569 0 0.42991 3.6569 3.5655 3.6569 3.6569 -0.023155 1.6774 3.6569 3.6569 0.30601 1.9425 3.6569 0.15323 0.40211 Amplification Peak 21 - CN values 12p12.1 chr12:24880663-25593511(probes 1064551:1064930) chr12:25402469-25556703(probes 1064800:1064899) chr12:24423552-29620686(probes 1064217:1067499) 7.5822e-11 1.1976e-10 Actual Copy Change Given -0.45458 -0.92017 0.079159 -0.015604 0.10643 0.58775 -0.2175 0.012097 0.19147 0.48975 3.6569 0.077286 0.00027309 -0.27965 1.1383 0.044148 0.046905 1.1232 0.50183 0.47187 3.6569 -0.00041585 0.26765 0.010842 -0.23533 1.2542 0.016984 0.016006 0.00074035 -0.47944 0.22167 0 -0.048209 0.0055529 0.040468 0.015028 -0.017482 -0.0033243 -0.70289 -0.38549 0.012934 0.048972 3.6569 -0.16319 0.011058 -0.0084385 0.066658 -0.21189 0.64891 0.019363 0.40361 -0.48628 0.10162 0.071966 0.004719 -0.39074 1.5678 0.028324 0.28531 0.64616 0.2904 -0.67729 -0.58009 0.097833 -0.27918 3.6569 1.3191 -0.1173 0.069095 2.6321 0.019843 -0.02748 0.0071508 0.37347 0.019923 -0.70469 -0.17234 0.043723 0.55797 0.061656 -0.12486 0.010006 0.49632 0.062102 0.12079 0.0073609 -0.10026 0.32818 0.03214 -0.024798 0.44409 0.0375 -0.26733 0.5681 2.3088 3.6569 0.53327 0.27868 3.6569 0.00073066 1.1983 0.1147 0.52818 0.51903 -0.04604 0.68868 0.13332 0.014325 0.026487 0.39065 0.02283 0.35218 1.1758 -0.09512 0.35895 0.68316 -0.015054 0 1.2107 0.69372 0.3928 0.61081 0.71297 0.45905 0.070895 -0.42123 3.4638 0.14682 0.059937 0.4262 0.39297 0.064797 -0.016665 0.044536 0.010982 0.019363 -0.11404 0.95713 0.26271 0.55337 0.0375 0 3.6569 0.57737 0.32769 0 -0.010742 0.092025 0.033408 0.3421 -0.00074311 0.24903 0.34372 0.020483 -0.11299 0.09856 0.00083195 0.027778 -0.010508 0.030169 0.3361 0.030873 0.026514 0.22052 0.70645 0.91966 0.15636 0.022024 0.16595 0.036512 -0.005743 0.0051359 -0.027945 0.0098234 0.042024 3.6569 0.067194 0.0087528 0.48647 0.11491 3.6569 0.65511 0.22453 3.6569 Amplification Peak 22 - CN values 12q15 chr12:69499276-70210091(probes 1087170:1087648) chr12:69681414-69723708(probes 1087291:1087314) chr12:65650739-72197573(probes 1084505:1088842) 1.8454e-06 2.2421e-06 Actual Copy Change Given 0.083029 0.028763 0.079159 -0.015604 0.10871 0.083776 -0.2175 0.017963 0.19147 0.0094491 2.0424 0.085943 0.00027309 -0.27965 -0.44619 0.044148 0.046905 -0.38008 0.062345 0.034113 -0.47807 -0.00041585 0.1006 0.0054139 -0.24606 -0.15554 -0.031648 0.016006 0.00074035 0.47305 -0.38381 0 -0.055366 0.0051359 0.035665 0.012097 -0.0060904 -0.0067813 0.060794 -0.40201 0.012934 0.048972 0.090865 -0.18886 0.011058 -0.0084385 0.066658 -0.14 -0.046718 0.019363 0.46861 3.6569 0.10162 0.071966 0.004719 -0.39074 -0.0066211 0.89204 0.28531 0.038124 1.0088 -0.67729 0.023847 0.027817 -0.12108 0.13029 0.015028 -0.1173 0.069095 2.1226 0.019843 -0.011693 0.0024753 -0.11965 0.019923 0.026373 -0.17234 3.6569 3.6569 0.061656 -0.12486 1.6546 0 0.062102 0.11749 0.0073609 0.7637 -0.028081 0 -0.024798 0.44409 0.0375 0.21637 0.5681 -0.11613 0.29056 -0.031632 0.2686 0.036653 0.00458 0.0087528 0.0075 0.09043 -0.040388 -0.078411 0.68496 0.11114 0.014325 -0.019752 0.6805 0.021884 -0.088374 0.61063 -0.09512 0.3697 0.65835 0.6226 0.31562 0.0068044 0.57952 -0.24131 -0.03245 0.037038 -0.45136 0.070895 -0.019863 0.013772 0.14682 0.051672 0.46041 0.38419 0.042879 -0.10588 0.18525 0.037359 0.019363 -0.11404 0.053094 0.26339 0.056228 0.0375 0 0.33465 0.56935 -0.056307 0 -0.0012473 -0.4292 0.039619 0.3421 -0.013176 -0.33156 3.6569 0.00069327 3.6569 0.031155 0.00083195 0.017824 -0.44835 0.0050251 0.3361 0.012097 0.026514 3.1202 -0.0088526 0.0029133 0.16145 0.022024 0.93467 3.1298 -0.005743 0.0051359 1.1186 0.0098234 0 0.17679 -0.11743 0.0087528 -0.45676 0.006663 0.55974 0.027037 -0.18295 0.27206 Amplification Peak 23 - CN values 13q22.1 chr13:73630948-74089174(probes 1154482:1154838) chr13:73883427-73910025(probes 1154668:1154691) chr13:73880414-74047190(probes 1154664:1154804) 0.12017 0.12017 Actual Copy Change Given -0.92815 0.29115 0.46576 -0.4152 -0.44631 0.20198 0.13169 -0.46185 -0.075745 0.52118 -0.15758 0.30649 -0.0045737 0.081466 -0.43897 -0.14811 -0.40473 -0.83015 -0.014366 -0.022469 -0.20099 -0.0024938 0.34795 -0.31856 0.22777 -0.31061 -0.0012479 -0.68314 0.0089393 0.013492 0.63938 0.019783 1.4974 -0.7063 -0.4076 0.092315 1.5137 -0.0019399 0.75681 0.012376 0 0.10906 0.16956 -0.25443 -0.027671 -0.067056 0.21637 0.79052 0 0.045708 0.040609 0.10599 -0.24131 -0.17613 0.63463 0.0066653 0.68503 -0.44837 -0.14748 -0.065045 0.023566 0.65001 1.27 -0.23031 0.68533 0.024615 -0.17487 0.33953 0.037359 1.7996 0.096878 -0.56915 -0.023773 0.11726 -0.0083005 0.095217 0.58865 0.45224 0.78261 0.0061145 0.18616 -0.60477 0.026935 0.4227 -0.27512 -0.025209 -0.13238 -0.05251 0.10176 0.14771 0.67307 -0.23618 -0.038714 0.12186 -0.52716 -0.53997 -0.43301 0.35332 0.045424 -0.40364 -0.41342 -0.0083005 0.59206 -0.19829 0.95816 0.2233 -0.23276 -0.0099611 -0.92191 0.32931 -0.41586 -0.11103 0.45939 -0.29922 0.55983 0.0042057 -0.0049844 0.11316 -0.35442 0.019363 -0.17626 1.9782 -0.57093 0.40644 3.6569 -0.42375 -0.0022168 -0.46035 -0.1177 -0.44663 -0.46206 0.0066653 0.3342 -0.1774 0.003191 -0.058505 0.31964 0.52503 -0.71323 -0.14 0.8691 0.40677 0.27554 -0.13716 1.4987 1.0145 0.23463 0.076422 0.038691 0.41379 0.02562 0.39346 0.073833 1.0348 0.21315 0.019223 -0.015329 0.42477 0.043192 -0.45961 -0.35533 -0.28679 0.0058595 0.097979 -0.33618 -0.010094 -0.272 -0.060211 0.22299 -0.18785 1.9636 0.0081672 -0.027124 -0.00087491 -0.33883 0.34226 0.2651 0.012516 0.34404 -0.0076124 -0.096704 0.013314 0.023566 0.2523 Amplification Peak 24 - CN values 14q21.1 chr14:35399861-39058108(probes 1188333:1190377) chr14:37851981-37860558(probes 1189775:1189776) chr14:37610483-38056422(probes 1189665:1189871) 0.15689 0.15689 Actual Copy Change Given 0.55655 -0.10526 0.0055529 0.052668 -0.1396 0.12845 -0.067458 -0.46547 -0.15278 -0.49162 0.38899 0.0013868 0.0047148 0.079447 -0.44954 0.37002 0.21883 0.040212 0.05637 0.10994 0.057083 0.00069327 0.80539 -0.057924 0.018943 -0.57021 -0.74229 0.5088 -0.0034158 0.49338 -0.2269 0.61262 -0.30944 0.073402 -0.37414 -0.0012473 0.018663 0.0049969 1.4183 -0.025893 -0.0069195 0.39546 -0.073343 -0.20137 -0.0012473 0.089561 0.18874 0.38012 -0.16319 -0.082402 0.92067 0.096525 -0.18282 -0.10395 -0.32124 -0.08413 -0.020116 0.029027 -0.36738 -0.025893 0.078727 0.015587 0.0048579 0.34958 0.073833 0.040566 -0.073877 -0.22478 0.10439 -0.20516 -0.02474 -0.0082449 0.00076126 -0.32368 0.035064 -0.68797 -0.095992 -0.14 -0.18446 0.13288 -0.021235 0.0068044 -0.53042 0.039783 0.045991 0.00041593 0.40994 0.36248 -0.0025892 0.19299 -0.074945 0 -0.29981 0.017124 -0.51342 -1.0174 0.1679 0.34925 0.068235 0.016565 0.78871 0 0 0.20132 0.40244 0.75337 -0.1572 -0.010099 0.0090048 0.38254 0.098997 0.0027745 1.1503 0.44376 0.041382 0.0024005 0.59692 0.015447 0.18068 -0.0059522 0.25809 0.033267 -0.60953 -0.46344 0.81211 0.39795 0.7637 0.29899 -0.066788 0.023987 0.35937 0.21606 0.51216 0.30282 -0.64528 0.037236 -0.019314 0.53134 -0.16326 -0.24034 0.0094491 -0.060345 0.33433 -0.51404 0.11785 -0.33802 -0.13833 0.078727 0.062794 0.043299 -0.34301 1.3304 0.36789 0.0044411 0 0.068378 -0.0045695 -0.47311 0.15831 -0.47417 -0.005261 -0.27344 3.5071 -0.023292 0.037359 0.23783 3.6569 -0.0060904 0.47238 -0.2252 0.37134 -0.39697 0.38932 0.1156 2.4159 -0.56982 0.20974 0.013887 0.54259 0.353 3.6569 0.44897 -0.2463 0.23674 Amplification Peak 25 - CN values 15q26.1 chr15:89828332-102531392(probes 1266438:1273700) chr15:90826965-90953647(probes 1267003:1267009) chr15:90660360-91075128(probes 1266895:1267090) 0.10665 0.10665 Actual Copy Change Given 0.49666 0.056228 0.058224 0.4832 0.37924 -0.45747 0.03728 0.99322 -0.12069 -0.028081 0.71791 -0.15682 0.0081917 0.059794 -0.36782 -0.014916 0.0036076 -0.22734 -0.17992 -0.4889 -0.49188 -0.0044312 0.23504 -0.041974 0.015587 0 -0.034496 -0.021647 -0.0010617 -0.49444 -0.18055 0.023706 0.19877 -0.015741 0.27379 -0.010232 1.068 0.0019418 0.86037 -0.38446 -0.037898 -0.49329 -0.11796 -0.22231 0.00097064 -0.00013862 0.20645 -0.054121 -0.11456 -0.1876 -0.024935 0.80131 -0.1803 -0.0027707 -0.31657 -0.47067 0.020365 0 0.29214 -0.040826 -0.028628 0.68124 0.47426 2.2604 0.3025 0.46562 0.39928 0.18086 0.077862 0.12161 0.022224 0.45282 -0.0020105 0.13628 0.024689 0.18844 -0.12862 0.70757 -0.20349 -0.10631 -0.12772 0.0351 0.46878 -0.11127 -0.027261 0.0070826 -0.1088 0.49943 -0.1467 0.55992 -0.4505 0.035242 0 0.5562 0.35235 0.55283 -0.0027707 0.66124 -0.0045695 0.010285 0.00027728 0.097397 0.28406 -0.082711 -0.017116 -0.40152 0.08739 -0.0031906 0.016818 -0.38616 0.048152 -0.098023 -0.01849 0.10599 -0.040554 -0.014599 0.0052749 -0.248 0.3501 -0.01409 -0.28867 -0.0030475 0.60155 0.42519 0.79075 -0.16319 -0.0066432 0.19086 -0.11352 -0.047801 -0.040616 -0.11704 -0.10167 -0.32273 0.64286 0.051672 0.25371 -0.065581 0.49139 -0.14888 0.9512 0.20457 0.093196 0.34746 0.2548 1.9033 0.63792 -0.46812 0.026514 -0.051181 -0.37351 -0.36544 0.35904 0.032281 0.039902 0.0086686 -0.0011087 0 -0.067726 -0.40849 1.1236 0.26294 0.05523 0.12594 0.29024 0.04812 0.063795 -0.0033243 0.096234 -0.005814 -0.031223 0.024829 0.38866 0.98363 0.0037465 -0.61249 0.22896 0.70045 -0.45329 -0.023705 -0.12914 0.074513 -0.25709 1.9529 Amplification Peak 26 - CN values 17q12 chr17:37737580-37930169(probes 1329237:1329346) chr17:37854508-37929558(probes 1329279:1329345) chr17:36698597-40145610(probes 1328762:1330404) 1.7302e-22 1.7302e-22 Actual Copy Change Given 3.6569 0.03637 3.6569 0.56685 0.056228 0.091155 0.82068 0.45581 0 -0.5038 -0.0033243 2.5306 0.016281 0.03214 0.43243 0.043865 -0.058596 0 0.02806 0.06537 -0.016292 -0.0029091 0.23504 0.1202 -0.5201 -0.19825 0.39496 -0.035585 0.012703 -0.013815 -0.35282 -0.040345 0.044571 -0.046041 3.6569 0.0073609 -0.017116 -0.0073339 -0.5712 1.1738 0.0013868 0.43631 0.17528 0.42805 0.021884 0.018452 0 0.46184 0.18011 0.5763 -0.0063668 -0.0087146 0.10351 0.097468 0.036653 0.011121 0.043321 -0.040089 -0.019599 0.55 0.13858 0.067518 2.6878 -0.083598 1.7911 0.10008 3.6569 3.6569 -0.070135 0.040091 0.039256 3.6569 0.0011773 -0.10828 0.30202 -0.15349 0.017963 0.066945 0.088403 3.6569 0.57683 1.3825 3.6569 -0.080121 3.6569 -0.0040162 0.69447 -0.075478 3.6569 0.065083 0.43075 0.027357 -0.013849 -0.094196 -0.47522 -0.071472 -0.020275 1.9978 -0.096837 -0.0051227 -0.020549 -0.0095426 0.28675 0.53434 0.593 0.72603 0.028622 0.065079 -0.063192 -0.37943 0.33221 0.1182 0.48621 -0.024524 -0.031435 1.0014 0.013632 0.040468 0.020946 -0.048883 -0.27428 -0.016841 -0.026751 -0.49653 -0.016079 -0.0092666 0.44223 0.13302 0.0087528 0.35675 -0.022744 0.0467 -0.12599 -0.048072 3.6569 0.020343 0.88926 0.45751 0.56569 1.5184 0.016985 1.6253 0.2617 -0.058866 0.33335 -0.25842 3.6569 0.032704 3.6569 0.18209 -0.018403 -0.37144 0.35512 0.056655 0.24498 3.6569 0.67641 1.886 0.14637 -0.0091286 -0.038667 -0.11051 0.53696 0.13569 0.3454 0.045708 1.0863 0.023706 0.02325 -0.21144 3.6569 -0.0037395 3.6569 -0.051899 0.28343 0.73511 0.1928 -0.016704 0.075271 -0.032725 0.41011 0.065044 -0.19987 0.0042599 Amplification Peak 27 - CN values 18p11.32 chr18:983189-2081265(probes 1351022:1351407) chr18:1373925-1478686(probes 1351210:1351273) chr18:1-2211652(probes 1350899:1351519) 0.01372 0.01372 Actual Copy Change Given -0.26625 0.033127 -0.40661 0.049114 0.15621 -0.32391 0.37117 -0.48827 0.54048 0.41078 0.48871 -0.067993 -0.00028143 -0.13251 0.024268 -0.22564 0.0087528 -0.39517 -0.089553 0.084643 0.047694 -0.0024938 1.5965 -0.02031 -0.25419 -0.51187 0.80655 0.003191 -0.0038309 -0.014641 2.1005 0.58686 0.023003 0.13895 0.44155 0.0034687 1.8721 0.0015255 0.032563 0.39131 -0.010508 -0.54643 -0.1609 -0.12382 -0.36601 -0.071205 0.20687 -0.48088 -0.21156 -0.44085 0.39031 0.37397 -0.51012 -0.53713 -0.33399 -0.10613 -0.018056 -0.052412 0.36279 0.048262 0.33755 -0.70845 0.64671 3.5643 0.015727 0.7705 0.0558 0.2664 0.012655 -0.16439 -0.019255 0.40734 0.0082641 0.12255 -0.049965 -0.69776 -0.023703 -0.59954 0.25824 -0.11351 -0.15962 0.55964 0.73322 -0.42515 0.95447 -0.0045695 0.38998 0.2939 -0.98386 -0.0013003 0.30378 -0.23777 -0.33687 0.51612 -0.08612 0.33739 -0.27069 -0.20622 0.036794 -0.44964 0.43834 0.38056 -0.049559 1.1759 2.0727 3.6569 0.40661 0.1673 0.77807 -0.40451 -0.033787 0.3033 0.57348 0.0076392 0.014394 0.011582 0.014609 0.1613 0.41999 0.7313 -0.24995 0.5062 0.04496 -0.0023553 0.031795 0.52468 0.10994 0.0023581 0.017684 0.48199 -0.00041585 -0.022744 2.1354 0.21345 0.051672 -0.69776 -0.13057 -0.54975 -0.5489 0.19193 0.00013863 0.001803 -0.8597 -0.38649 0.22885 -0.70971 -0.036538 0.074265 -0.57733 0.46263 -0.41161 -0.39263 0.25965 0.093621 0.33901 1.5193 0.010564 -0.7582 0.053379 -0.04577 -0.28964 -0.58451 0.061937 -0.01904 -0.0013858 -0.16485 0.31322 -0.029799 0.45139 0.44122 -0.040345 0.023426 0.37312 0.65787 -0.01037 -0.48418 0.22418 -0.7028 2.1442 0.3285 0.37282 0.38051 0.27584 -0.15809 Amplification Peak 28 - CN values 18q11.2 chr18:19613596-19648445(probes 1359457:1359468) chr18:19632617-19641473(probes 1359462:1359467) chr18:19093979-22460385(probes 1359240:1361227) 5.2675e-08 5.2675e-08 Actual Copy Change Given 0.026795 0.033127 -0.019863 2.2569 0.15621 -0.32391 3.6569 -0.48827 -0.25394 0.41078 -0.1499 0.021043 -0.00028143 0.65332 0.024268 -0.22564 0.0087528 -0.39517 -0.089553 0.084643 -0.46727 -0.0024938 0.25355 -0.010508 -0.25419 -0.51187 0.79097 0.003191 -0.0038309 -0.014641 -0.058596 -0.0096806 0.023003 0.055973 0.44155 0.0034687 -0.26011 0.00069234 0.64139 -0.017941 -0.010508 -0.54643 -0.1609 -0.19912 -0.36601 -0.071205 0.78408 0.39336 -0.21156 1.3792 -0.043602 0.37397 0.61081 -0.23067 2.9861 -0.10613 -0.018056 -0.052412 0.011947 1.3072 0.47615 -0.7019 -0.018628 1.351 0.0022193 -0.60569 0.041175 1.5858 -0.041852 -0.16439 -0.060153 1.279 0.0082641 0.12255 -0.049965 -0.69776 0.40911 2.0014 2.1127 -0.11351 -0.15962 0.63426 0.028903 -0.15948 1.45 -0.019589 0.4196 -0.20486 -0.45254 0.22808 0.28754 0.26514 0.97894 0.51612 -0.08612 0.33739 0.31787 -0.16942 0.036794 0.018803 -0.41344 -0.36533 -0.049559 -0.046762 0 -0.033765 -0.22969 0.1673 0.028173 -0.40094 -0.033787 0.3033 2.8872 0.0076392 0.014394 0.011582 -0.018042 1.1158 -0.41531 0.00597 -0.18068 0.5062 0.04496 -0.0023553 -0.28018 -0.35122 0.10994 0.0023581 0.017684 1.6767 -0.00041585 -0.022744 -0.55924 0.21345 0.060965 -0.69776 2.107 -0.015036 0.75882 0.19193 0.0019418 -0.17056 3.6569 -0.43485 0.54048 0.0070826 1.7102 0.091155 0.048688 2.1042 0.053043 0.0066653 0.25965 0.066945 -0.17651 0.87707 0.010564 -0.18484 0.053379 -0.04577 -0.28964 3.6569 -0.60738 -0.01904 -0.023703 -0.16485 -0.050776 0.003191 0.41312 0.44308 -0.040345 0.023426 0.37312 0.0021759 0.33428 -0.48418 -0.16297 0.041034 -0.31471 -0.14503 0.37282 0.14128 0.27584 -0.15809 Amplification Peak 29 - CN values 19q12 chr19:30258695-30349882(probes 1403724:1403799) chr19:30307099-30315734(probes 1403767:1403777) chr19:29277891-31500858(probes 1402934:1404586) 1.2339e-07 1.2339e-07 Actual Copy Change Given -0.52542 3.6569 -0.29922 3.6569 0.41028 0.06494 0.094637 0.97605 -0.12888 -0.51393 -0.069867 3.6569 0.017679 0.0082034 0.35937 0.039044 -0.016979 -0.1633 -0.020549 0.024408 0.30937 -0.0027707 -0.096836 -0.043873 0.0054139 0.3017 -0.046042 -0.74159 0.0042104 -0.055095 0.23985 -0.075345 -0.56704 -0.075612 -0.068395 -0.10959 -0.10197 -0.0063668 3.6569 0.061222 -0.0022168 -0.0011087 0.094927 0.0062481 0.042732 -0.0096806 0.13613 -0.28702 0.026514 0.029888 -0.93378 0.034818 0.40878 0.58614 -0.0094046 0.40744 0.045021 -0.085074 -0.13903 1.2185 0.23659 -0.62312 1.072 0.15188 3.6569 0.03094 0.0201 -0.025346 -0.15311 -0.32117 0.0058904 -0.044496 -0.018972 -0.0019399 0.0282 1.0799 0.014609 3.6569 -0.26157 0.57006 -0.027808 -0.00055444 -0.57684 0.60867 -0.27188 0.023566 0.8566 -0.022411 2.3085 0.084787 0.13495 0.019923 0.15295 0.88206 0.28628 0.24981 0.24342 0.46092 -0.16026 -0.094196 -0.052666 3.0221 -0.12875 -0.11748 0.64213 -0.19762 -0.2862 -0.018083 -0.10542 -0.37481 -0.15656 -0.1539 0.52731 0.26373 0.14421 -0.09508 0.03031 -0.047395 0.049114 -0.11103 -0.34927 -0.097759 -0.066824 0.18162 -0.4071 -0.29367 -0.12304 -0.085855 -0.17626 -0.062092 0.34161 -0.055769 0.11173 0.82138 -0.087712 -0.01106 0.0023581 -0.19082 -0.0071273 0.47873 0.84375 -0.20269 1.197 -0.0031859 3.6569 -0.024114 1.8589 0.0080567 -0.57861 0.74613 -0.041751 -0.014366 0.15935 0.076422 0.00597 0.010842 0.66623 -0.044551 -0.026167 -0.44534 -0.035448 -0.051046 -0.00041585 -0.0020784 0.014203 -0.19011 0.1437 0.00027728 -0.3126 0.47701 -0.52471 -0.010613 -0.05037 -0.11495 0.23612 0.20671 1.6636 -0.081871 -0.48926 0.088111 0.52608 -0.092117 -0.22761 -0.27894 Amplification Peak 30 - CN values Xq28 chrX:152735103-153624575(probes 1553288:1553583) chrX:153052650-153184175(probes 1553408:1553473) chrX:152972542-153240309(probes 1553374:1553486) 0.18371 0.18371 Actual Copy Change Given -0.22047 -0.050911 0.18824 0.017684 0 2.3657 0.032422 0.013868 0.10628 -0.14284 0.097106 0.010146 0.070669 -0.031905 0.38849 0.054945 0.45003 -0.042355 0.012516 0.0065262 0.30889 0.017124 0.28485 0.46263 -0.036401 0.12933 0.56632 0.33108 0.0044882 1.1312 -0.065313 -0.036265 3.6569 0.5003 -0.11482 0 -0.027671 0.021086 -0.26312 0.15099 0.010424 0.52801 0.03369 0.0036076 0.033876 0.013492 0.0076392 0.11028 0.029325 0.58417 0.36444 -0.49809 0.17845 -0.079476 -0.10053 -0.078943 0.17908 -0.17039 0.10263 0.68217 -0.024935 -0.16447 0.1095 -0.24509 -0.18823 -0.022952 0.017824 0.0066061 -0.091056 0.041256 0.032482 0 -0.0061609 -0.24715 -0.068663 -0.10038 0.028622 0 0 -0.014498 0.05466 -0.39386 -0.15362 0.17123 -0.0088526 0.027216 -0.51517 0.28105 -0.040073 0.086233 0 -0.030813 0.040468 0.090285 -0.017757 0.50705 0.53942 0.36182 1.6726 0.22715 0.015727 0.47718 0.35545 -0.095954 -0.024935 0.82196 -0.0024938 0.30697 -0.18876 0.37924 0.57666 0.088548 0.24996 0.49182 -0.010996 -0.08462 -0.23618 -0.038714 0.31097 -0.0092666 0.0052749 0.73815 -0.19591 0.38551 0.037154 0.026233 0.24188 0 -0.023292 0.1489 0.65443 0.025812 0.27494 0.19004 -0.2281 -0.016704 0.035665 0.10833 0 -0.30522 0.92314 0.073115 0.036305 -0.047531 0.030451 -0.032041 1.2671 0.17242 -0.24496 0.37924 -0.010972 0.20748 -0.03504 0.26388 -0.10867 -0.10066 0.13081 -0.15238 0.30569 -0.11561 -0.020001 -0.017116 -0.03504 0.023706 0.9555 0.25824 -0.15439 0.1619 0.35316 0.89487 0.11402 -0.040073 0.51594 0.0088485 0.68161 0.024969 0.9192 -0.0036011 0.34331 0.1851 0.42991 0 -0.06424 0.23798 Deletion Peak 1 - CN values 1p36.11 chr1:23960869-31653987(probes 11303:14822) chr1:27089269-27099659(probes 12677:12678) chr1:23845194-31520500(probes 11250:14774) 0.0012162 0.0043495 Actual Copy Change Given -0.049289 -0.26552 -0.34687 -0.10749 -0.11743 0.078917 -0.15362 -0.49204 -0.20772 0.021183 -0.22318 -0.1779 0.0020763 -0.34847 -0.55186 0.04943 0.20763 0.045309 0.066229 -0.2319 -0.46855 -0.0012906 -0.14772 0.1936 0.55673 0.070386 -0.80285 -0.043059 -0.00078456 0.31338 0.058509 -0.0059522 -0.44167 0 -0.3529 0.0020805 0 0.0012481 -0.60429 0.026935 -0.02637 -0.48033 -0.091155 0.11096 -0.028901 0.020343 0 0.032471 -0.33017 -0.045093 -0.45736 -0.51321 -0.19592 -0.23745 -0.31984 0.034751 0.019525 -0.023445 0.34875 0.1133 -0.038442 0.027919 -0.096704 -1.0853 -0.37459 -0.19569 -0.11072 -0.29933 -0.23618 0.080106 -0.011872 -0.57255 0.00034525 -0.59146 -0.76775 0.28374 -0.49204 -0.25805 0.30314 -0.11632 -0.17183 0.46759 -0.52256 0.069404 -0.30733 0.0034687 -0.12551 0 -0.064177 -0.53348 -0.095912 -0.024262 0.04883 -0.097232 0.2369 -0.090626 -0.43193 0.21852 0 0.0083351 -0.012576 -0.020824 -0.12434 0.097787 -0.03054 -0.0018893 -0.24436 0.1428 -0.01409 0.049398 -0.091155 -0.059313 -0.0031859 0.014437 -0.042183 -0.011018 0.014134 0.036653 -0.0083005 -0.047124 -0.23165 -0.55407 0.051349 -0.48169 -0.0035747 -0.40429 -0.48175 -0.46653 -0.053881 -0.077745 0.2627 -0.086365 -0.50139 -0.048072 -0.03885 0.038347 -0.024935 -0.67417 -0.20859 -0.17246 -0.0022168 -0.037408 0.25013 0.066086 -0.062495 0.012097 -0.089434 -0.46067 -0.53144 0.27474 0.0056417 -0.034495 -0.52256 0.026416 -0.18458 -0.37718 -0.0047079 -0.47828 -0.14258 0.041633 -0.40268 -0.30493 -0.60931 -0.10749 -0.014228 -0.27111 -0.11404 -0.31436 0.016985 -0.5036 -0.017666 -0.023018 0.38816 -0.02449 -0.023018 -0.010232 -0.2296 0.0079175 -0.44743 0.003443 0.23334 -0.18537 -0.56236 -0.61393 Deletion Peak 2 - CN values 1p13.2 chr1:113498011-117457733(probes 63215:65695) chr1:114417438-114525573(probes 63688:63740) chr1:104846636-149882013(probes 58184:67528) 8.8025e-06 2.0956e-05 Actual Copy Change Given 0 0.20794 -0.34687 0.73076 -0.62484 0.05637 -0.11548 0.022444 0.29294 -0.53531 -0.22318 -0.11691 0.0020763 -0.29898 -0.4935 0.17144 0.027778 -0.36961 0.066229 -0.2319 -0.27056 -0.0012906 -0.40252 0.29183 -0.51722 0.019783 0.059873 0.0058309 -0.00078456 -0.15311 0 -0.0059522 0.086086 0.0090312 -0.031637 0.0038854 -0.56176 -0.0021423 0.023987 -0.0123 -0.030871 -0.020163 -0.088272 0.14995 -0.041431 0.020343 0 0 -0.33017 -0.016017 -0.0098185 -0.18923 -0.1975 0.021398 -0.66433 -0.44448 0.019525 0.060349 0.34875 0.17966 -0.038442 0.025512 -0.0067813 0 0.059651 -0.21559 -0.11072 -0.44599 -0.10736 -0.40024 -0.011872 -1.1427 0.00034525 -0.10026 -0.76775 0.25652 0.50255 -0.15643 -0.11822 -0.11312 -0.17449 -0.60584 -0.52256 0.069404 0.13717 0.0041632 0.49614 -0.0077482 -0.064177 -0.42025 -0.095912 -0.013264 0.10264 0.016726 0.2369 -0.090626 -0.50795 0.27695 0.00041593 0.0022193 0.013772 1.031 0.010564 0.085753 0.028763 -0.0018893 -0.24655 0.15397 0.044263 -0.38862 -0.011749 -0.059313 -0.62474 0.014437 0 0.0029558 -0.69477 -0.01409 0.39363 0.12317 -0.90555 -0.52041 -0.26158 -0.43214 -0.0035747 0.097252 -0.47311 -0.46653 -0.63925 -0.96085 0.34665 0.10176 -0.55314 -0.3634 -0.61853 0.038347 -0.076278 0.20412 -0.13891 0.25246 0.83608 -0.037408 0.43127 0.18026 -0.35316 0.012097 0.0084743 -0.42407 -0.53144 0.27474 0 -0.038306 -0.49621 0 -0.19212 0.10588 -0.0047079 -0.47828 -0.5851 0.02363 0.019223 0.16497 -0.60931 -0.013677 0.33205 -0.2005 -0.043466 0.0282 0.49424 0.023987 -0.49663 0 0.43783 0.042263 -0.023018 -0.013953 0.15229 0.0079175 -0.45854 -0.031038 0.23334 -0.51992 0.12771 -0.015604 Deletion Peak 3 - CN values 1q44 chr1:245290228-247052144(probes 127528:128174) chr1:245911868-247052144(probes 127948:128174) chr1:246037293-246037919(probes 128062:128063) 0.0006282 0.00061641 Actual Copy Change Given 0.45564 0.35414 0.084209 -0.0069195 -0.032723 -0.096521 1.1316 0.40947 0.13835 -0.00097017 0.76389 -0.010094 -0.0037382 0.076058 0.48979 0.26608 0.027778 0.36792 0.066515 0.93162 -0.14554 0.0062481 0.64501 0.26923 0.80733 0.51751 1.4295 -0.7055 -0.00078456 0.38089 0.079159 0.0091705 0.28469 -0.013062 0.30937 -0.018765 0.20947 -0.0033243 0.031014 0.018523 0.059181 0.07484 0.36297 0.14995 -0.012187 0.020343 0 0 0.47271 0.21945 -0.0018954 0.089272 -0.16637 0.69933 0.015308 0.65833 0.82724 -0.81664 0.92248 1.0913 -0.30122 0.69447 -0.013127 -0.054151 0.039761 0.44892 -0.00041585 0.053237 0.57398 0.087906 0.0039449 0.56746 0.00034525 0.27001 0.75748 0.26184 0.16205 0.68347 0.24295 -0.39307 0.5617 0 -0.033677 0.069404 0.14147 -0.016429 0.45658 -0.0077482 0.03214 0.058795 -0.09578 -0.10906 0.092895 -0.031341 0.46759 -1.2929 -0.27703 1.1439 -0.017731 -0.0071641 -0.3904 0.0066653 0.036935 0.45647 0.68413 1.412 0.30234 -0.037398 -0.87838 0.76888 0.29915 0.28548 -0.042652 -0.3217 -0.038712 0.61304 0.12659 0.68477 1.1582 0.36901 0.25872 -0.0077482 0.012199 -0.49694 0.70186 -0.025416 -0.03054 0.58184 0.54136 0.79022 0.31739 0.10176 1.7545 0.27096 0.017963 0.038347 -0.0037395 0.020063 -0.13891 0.77695 0.81981 -0.024935 0.41849 0.19862 -0.10171 0.012097 0.18283 0.065799 0.61444 0.26483 -0.045819 1.3304 0.34145 0.033267 0.80208 0.276 -0.03817 0.10118 0.01419 0.056655 0.05523 -0.056577 -0.13368 -0.013677 0.33918 0.20656 0.17483 0.65885 0.83844 0.49649 0.44308 0 0.027137 -0.73366 0.35104 0.2548 0.16201 -0.01037 0.34128 -0.03218 0.21177 0.13254 -0.0040162 0.4353 Deletion Peak 4 - CN values 2q22.1 chr2:140708948-143637838(probes 201128:202970) chr2:140976294-142894275(probes 201262:202533) chr2:141033330-142752009(probes 201288:202444) 1.1171e-27 7.8259e-26 Actual Copy Change Given 0.078294 0.036794 0.041175 -0.79118 0.016565 0.03265 0.36011 0.35039 -0.038986 -1.1625 0.0051359 0.031334 0.5048 -0.97814 1.035 -0.40606 0.015308 -0.40537 -0.54007 -0.64085 0.095363 0.0019418 -0.22355 -0.4163 -0.14747 0.2708 0.031576 -0.69314 -0.00023018 -0.53581 0.32125 -1.2904 -0.064994 -0.71123 0.037641 -0.73047 -0.011473 -0.7089 0.03214 -0.0049844 0.015028 0 -0.027261 0.12845 -0.0015243 -0.005261 -0.3617 -0.010323 -0.76098 0.3512 0.3129 0.014219 -0.52696 0.071104 0.057796 0.45649 -0.041087 0.027399 0.63989 -0.013815 0.14622 -0.00027724 1.2027 0.0068044 -0.12862 -0.044215 0 0 -0.7156 -0.063761 0.017133 0.40501 -0.00020928 0.21616 -0.7926 -0.012713 -0.29851 0.26247 0.041458 0.0061145 0.01447 -0.0022168 0.51978 -0.12886 0.095944 0.00027728 0 0.031999 0.0079175 0.081721 -0.098023 0.030451 -0.29898 0.033267 0.02453 -0.93718 0.33018 -0.21119 0.060079 -0.0018014 -0.018902 0.2456 0.15606 0 0.09987 -0.024884 0.35398 -4.6421e-06 -0.90837 -0.053746 -0.066118 0.011121 0 0.0052708 0.33698 0.0092131 -0.017666 -0.17967 0.013353 -1.2929 -0.39241 -0.087049 -0.5717 -1.2929 -1.2929 0.9009 -0.92622 -0.2005 0.075559 -1.2929 -0.58833 0.062937 -1.2929 0.1595 0.00458 -0.81441 0.26985 -0.024524 0.12749 0.26797 0.69858 0.10482 -0.25551 0.16115 -0.19837 0.012376 -0.03054 -0.39129 0.027919 0.25824 0.039144 0.013213 -1.2929 -1.2191 0.3592 0.38303 -0.09644 0.026092 0.0029133 0.39978 0.24156 0 -0.64405 0.026233 -0.73047 -0.49465 0.19969 -0.76877 -1.1541 -0.20212 0.40761 0.010777 -1.2929 -0.0041447 -0.70917 0.21514 -1.1119 -0.74708 -0.35772 -0.59789 0 -1.2929 -0.25322 0 Deletion Peak 5 - CN values 2q33.3 chr2:204826225-206558638(probes 236615:237829) chr2:205401039-206486163(probes 237012:237774) chr2:205566556-206454143(probes 237118:237754) 6.9949e-07 0.00014209 Actual Copy Change Given 0.093766 0.0086135 0.041175 0.28548 0.016565 0.026252 0.38733 0.36723 0.040823 0.0056919 0.013772 0.057511 -0.025897 0.0416 -0.14274 -0.1316 0.015308 -0.31036 -0.13549 -0.15707 0.10891 0.0019418 -0.003412 0.013911 -0.14747 0.2708 0.033126 0.012237 -0.00023018 0.43737 0.33772 0.013911 -0.08125 0.048262 0.037641 -0.3551 -0.063838 -0.00013862 0.019363 0.0022193 0.015028 0 -0.027261 -0.501 0.0002869 -0.005261 0.01433 -0.0035534 -0.19362 0.15711 0.29803 0 0.072684 0.071104 0.057796 0.51647 -0.0066211 0.059349 -0.0070683 -0.013815 0.13865 -0.00027724 -0.018765 0.0068044 -0.1391 -0.037697 0.0093098 0.019923 -0.029721 -0.40201 0.017133 0.42039 -0.00020928 0.21622 -0.014641 -0.0018014 -0.29851 0.23272 0.035947 0.0061145 0.01447 0.018523 -0.52348 -0.12886 0.092605 0.0063871 -0.98386 0.031999 0.0030522 0.081721 0.55425 0.030451 0.30553 0.022725 0 -0.037626 -0.4448 0.038913 0.78659 0.00083195 -0.014503 0.34469 0.1498 -0.049873 0.1038 -0.44555 0.34128 -4.6421e-06 0.020736 0.041741 0.36805 0 0 0.018663 0.33698 0.0025393 -0.03054 -0.17967 0.010375 0.05637 0.2428 1.2748 -1.2459 0.13861 -0.29396 0.042024 -0.3479 -0.23047 -0.62741 -0.025756 -0.030404 -0.027639 0.17427 -0.35259 0.024268 -0.019863 0.26985 -0.62741 0.11543 0.26592 0.70851 -0.011979 0.28772 0.17377 0.13732 0.012376 -0.01354 -0.39897 -0.52971 0.25824 0.070909 -0.34377 0.081755 -0.0063668 -0.04983 0.38419 0.68124 0.026092 0.0029133 -0.41311 -0.38549 0 -0.61527 0.026233 1.6118 0.30809 0.15594 -0.031905 0.24353 -0.21466 0.38819 0.47581 -0.037762 0.02226 0.018663 0.21024 -0.24305 0.018943 -0.0069195 0.0056896 -0.039571 -0.60992 -0.26769 -0.28798 Deletion Peak 6 - CN values 3p26.2 chr3:3220635-4535479(probes 259830:260623) chr3:3742290-4511101(probes 260344:260602) chr3:1-4874790(probes 259400:260937) 7.5581e-06 0.045006 Actual Copy Change Given 0.0467 -0.039665 -0.39051 -0.035585 -0.098418 -0.27667 -0.1092 -0.5425 -0.25733 -0.53541 -0.023018 -0.39007 -0.0095468 -0.68997 -0.46408 -0.4447 -0.21911 -0.40194 -0.17474 0.043582 -0.45747 0 -0.35757 -0.34343 -0.53154 -0.59575 -0.026 -0.69692 0.021511 0 -0.39708 -0.64706 -0.00027961 -0.0024938 -0.39664 -0.36986 0.087471 0.0055529 0.042024 0.013496 0.00097064 0.31001 -0.087049 0.16565 -0.00055444 0.048404 0.023145 -0.13725 -0.34492 0.033831 -0.47501 -0.19212 0 0.014609 -0.32054 -0.45426 -0.015444 0.089544 -0.68934 1.0439 -0.22883 -0.68788 -0.019485 -0.4076 -0.34377 -0.64006 -0.0022168 -0.15452 0.058367 -0.40345 -0.071281 -0.16467 -0.018698 0.62061 -0.7982 0.48357 0.045396 -0.14226 -0.2249 -0.19399 -0.15452 0.071966 -0.5349 -0.18142 -0.076545 -0.0067813 -0.10064 -0.04689 0.00597 0.04954 0.19923 0.031859 -0.30698 0.040609 -0.53338 0.23845 -0.42328 0.28992 0.046559 -0.43864 -0.4342 -0.36884 -0.51733 -0.58836 -0.76638 -0.060211 0.12402 -0.29047 -0.93737 -0.0011087 -0.42855 -0.32089 -0.64368 -0.30228 -0.37161 -0.71298 -0.035585 -0.58623 -0.40027 -0.7287 -0.30369 -0.55607 -0.59305 -0.45372 -0.33589 0.15606 -0.28628 -0.51228 -0.63916 -0.48701 -0.19425 -0.103 -0.58777 -0.69423 -0.63453 -0.077611 -0.18131 0.050964 -0.41229 0.34974 -0.0047079 -0.47691 -0.23837 0.10599 -0.068261 0.0084743 -0.083465 -1.0349 0.041034 -0.34343 -0.33541 -0.35749 -0.49778 0.0029133 -0.58667 0.022346 0.0036076 -0.47003 -0.048748 -0.78564 -0.3424 0.094346 -0.64603 -0.035733 -0.42648 -0.48512 -0.070197 -0.75685 -0.48733 -0.2554 -0.53713 -0.53906 -0.46131 -0.73716 -0.34504 -0.60806 -0.67189 -0.7495 -0.47342 -0.21305 -0.19337 -0.61392 0.30282 -0.021779 Deletion Peak 7 - CN values 3p14.3 chr3:53923579-55500153(probes 288783:290035) chr3:54150629-55115508(probes 288906:289693) chr3:47900247-93743932(probes 286166:310076) 8.8275e-10 0.00017897 Actual Copy Change Given 0.01433 -0.039665 -0.38716 -0.035585 -0.098418 -0.27667 -0.1092 -0.49162 -0.37898 -0.52839 -0.42178 -0.40174 -0.0095468 -0.68997 -0.46408 -0.43669 -0.21911 -0.40194 -0.17474 -0.51311 -0.45163 0 -0.34859 -0.34343 -0.53154 -0.59575 -0.014427 -0.68706 0.021511 0.0038854 -0.38055 -0.65761 -0.00027961 -0.75002 -0.42381 -0.36986 0.1042 0.0055529 0.037641 0.012516 0.00097064 0.32366 -0.087049 0.14073 0.00069327 0.048404 -0.064556 -0.13725 -0.34492 -0.0089906 -0.48638 -0.48925 0 -0.42719 -0.32054 -0.44588 -0.0077262 -0.78362 -0.68934 -0.013677 -0.22711 -0.68788 -0.6296 0.42974 0.021183 0.071459 0.006109 -0.15452 -0.66124 -0.40345 -0.02884 -0.14266 0 -0.1798 -0.80187 0.26671 0.045396 0.22623 -0.22256 -0.19399 -0.15452 0.016286 -0.5349 -0.39595 -0.076545 -0.0067813 -0.10064 0.081427 -0.48292 -0.19584 0.19147 -0.2463 -0.30698 -0.031993 -0.53338 0.23612 -0.42973 -0.22694 -0.79126 -0.45104 -0.4209 -0.37358 -0.52393 -0.60141 -0.75028 -0.016292 -0.27667 -0.29047 -0.92138 -0.79503 -0.42855 -0.32089 -0.64678 -0.31447 -0.37161 -0.71298 -0.021098 -0.59283 -0.38672 -0.72281 -0.28418 -0.5269 -0.61309 -0.45372 -0.7207 -1.2929 -0.29181 -0.5203 -0.64871 -0.47512 -0.3659 -0.10224 -0.57009 -0.372 -0.63453 -0.72517 0.035877 0.050964 -0.41188 0.29453 -0.0047079 -0.20374 -0.23165 0.12727 0.26561 0.0084743 -0.016154 -0.44189 0.016032 -0.38022 -0.33541 -0.35749 -0.49778 0.0029133 -0.57565 0.020483 -0.0014313 -0.51135 -0.048748 -0.85416 -0.3424 0.094346 -0.61815 -0.035733 -0.26709 -0.46897 -0.20261 -0.75685 -0.47628 -0.23004 -0.49861 -0.53906 -0.46131 -0.70337 -0.34504 -0.60806 -0.15045 -0.7495 -0.46918 -0.21305 -0.74777 -0.61392 -0.27164 -0.32763 Deletion Peak 8 - CN values 3p14.2 chr3:59702822-61026498(probes 292622:292623) chr3:59702822-61238217(probes 292622:292820) chr3:47900247-93743932(probes 286166:310076) 6.9854e-22 3.143e-14 Actual Copy Change Given 0.01433 -0.039665 -0.38716 -0.035585 -0.098418 -0.76424 -0.1092 -0.49162 -0.37898 -0.52297 -0.42178 -1.0452 -0.0095468 -0.68997 -0.46408 -0.43669 -0.21379 -0.40194 -0.17474 -0.52828 -0.45163 0 -0.34859 -0.34343 -0.53154 -0.59575 -0.014427 -0.68706 0.021511 0.0038854 -0.38055 -0.63377 -0.039396 -1.2929 0.035524 -0.36986 0.027638 0.0055529 0.060079 0.012516 0.00097064 0.32592 -0.087049 0.14073 0.00069327 0.048404 -0.064556 -0.13725 -0.34492 -0.43178 -0.48638 -0.48925 -0.68997 -0.12082 -0.32054 -0.44588 -0.0077262 -0.77516 -0.68372 -0.013677 -0.22711 -1.2929 -0.62969 0.42974 0.045991 0.071459 0.006109 -0.15452 -0.66124 -0.40345 -0.0057548 -0.13789 0 -0.1798 -0.80187 0.26671 0.045396 0.31594 -0.68888 -0.19981 -0.15452 0.018523 -0.5349 -0.39595 -0.076545 -0.014228 -0.10064 0.081427 -0.48292 -0.19584 0.19147 0.77233 -0.30698 0.010285 -0.53338 0.31306 -0.42973 -0.19074 -0.72558 -0.45104 -0.4209 -0.37358 0.35904 -0.9169 -0.75028 -0.0069195 -0.27667 -0.29047 -0.92138 -0.82904 -0.42855 -0.32304 -0.64678 -0.31447 -0.37161 -0.71298 -0.058184 -0.57318 -0.38672 -0.72281 -0.30592 -0.6565 -0.61309 -0.45372 -0.7207 -0.45907 -0.32957 -0.5203 -0.64871 -0.47512 -0.3659 -0.10224 -0.57009 -0.36238 -0.63453 -0.72517 0.035877 -0.56475 -0.41188 0.29453 -0.0047079 -0.20374 0.1994 0.12727 0.29056 0.0084743 -0.030404 -0.44189 0.047552 -0.38022 -0.33541 -0.35749 -0.49778 -0.010508 -0.57565 -0.45971 -0.024261 -0.95312 -0.048748 -0.85416 -1.1018 0.4882 -0.61815 -0.035733 -0.29094 -0.48775 -0.20261 -0.75685 -1.0208 -0.2537 -0.49861 -0.53906 -0.46131 -0.70337 -0.34504 -0.60806 -0.18863 -0.7495 -0.46918 -0.21689 -0.74777 -0.61392 -0.27164 1.1667 Deletion Peak 9 - CN values 3q11.1 chr3:90078624-93767487(probes 309982:310080) chr3:90485637-93736225(probes 310072:310073) chr3:47900247-93743932(probes 286166:310076) 6.4878e-07 0.0026913 Actual Copy Change Given 0.1158 0.47426 -0.2537 0.67586 0.28485 0 -0.12648 0.46724 0.95754 -0.49632 -0.10946 -0.34102 -0.0095468 0.88306 0.63975 0.12432 0.42284 -0.85168 -0.17474 1.524 0.83707 0 1.0074 0.96329 0.03214 -0.59575 1.612 0.19756 0.021511 0.0058309 0.7325 0.026233 -0.03368 0.076135 0.035524 -0.3584 0.027638 0.0055529 0.060079 -0.31137 0.00097064 0.32592 -0.087049 0.14073 -0.0033243 0.048404 -0.064556 -0.13454 -0.34939 -0.048748 0.45632 0.10512 0.0020805 -0.066654 -0.01144 -0.44306 -0.0077262 0.020747 1.5828 -0.012438 -0.20261 0.020343 0.019783 0.04954 0.043197 0.053304 0.006109 0.41463 -0.66124 0.13045 -0.0057548 0.40467 0 -0.27081 0.78408 0.26907 0.045396 0.276 0.70701 0.14118 -0.15452 -0.0019399 0.57255 0.088281 -0.022744 -0.0069418 -0.086518 0.081427 0.48423 0.21899 0.19056 0.03863 0.31482 0.051103 0.70457 0.31306 0.51943 -0.7188 0.81532 0.62515 0.38965 0.22746 -0.47754 0.54236 0.043015 0.72489 0.10118 0.014465 -0.92138 0.75834 0.35267 0.24404 0.013492 0.38303 -0.35117 0.6921 0.54912 1.1824 0.022585 -0.63301 -0.30592 0.52906 0.0084364 0.94364 -0.66007 -0.84379 -0.54482 1.0001 -0.13005 1.3889 0.44545 0.052099 1.2012 0.2877 0.0467 0.7134 0.035877 0.69933 0.2449 0.33918 -0.011484 0.0070826 0.094648 0.19874 0.25762 0.0084743 -0.030404 -0.40705 0.047552 -0.30545 -0.33079 0.038913 0.33966 -0.010508 2.5855 0.088258 -0.0045123 -0.45939 0.073766 -0.048613 0.24575 0.12977 1.4042 -0.035733 0.86156 0.88306 0.19214 -0.037218 0.97152 0.2802 -0.978 0.51542 1.1067 0.020439 0.26923 -0.60342 0.0077415 0.73853 0.40611 0.1607 1.4817 0.15184 0.0416 0.1625 Deletion Peak 10 - CN values 3q26.31 chr3:174345545-175760559(probes 353555:354085) chr3:174148679-175760559(probes 353464:354085) chr3:174689921-174696603(probes 353775:353776) 0.00066738 0.00065002 Actual Copy Change Given -0.92025 0.58166 -0.41597 0.71246 1.1606 0.15024 -0.12648 0.001803 0.75643 0.0062552 0.043582 -0.38593 0.54364 0.90512 0.66549 0.12432 1.0934 0.34018 0.37331 1.5779 0.6554 0 0.95488 0.99571 0.58055 0.41329 1.6596 0.69615 0.021511 1.3503 0.8048 0.029325 -0.025622 2.2419 0.18753 0.076998 1.1148 -0.0020767 0.051956 -0.31137 0.00097064 0.34925 -0.46238 0.15263 -0.0033243 0.048404 -0.064556 1.8692 1.2223 -0.44642 1.3743 0.096537 0.60684 -0.065179 0.024127 -0.13975 -0.017644 0.020747 0.93975 0.6594 0.19558 0.020888 0.0015255 1.5955 0.080312 0.69979 0.61324 0.42519 -0.61076 0.1344 -0.0057548 0.43571 0 -0.080752 0.78678 -0.16967 0.064082 0.66574 0.70701 0.14118 -0.15452 0.036935 0.57255 0.085966 0.34177 0.00083195 0.40994 0.081427 0.51194 0.27426 0.18086 0.03863 0.9302 -0.49308 0.97564 0.43125 1.4438 0.27584 0.82725 0.54618 0.42625 0.20076 0.87827 0.54236 0.047374 0.72301 0.33415 0.014465 3.6569 0.77714 1.2136 0.83595 1.8143 0.38303 0.77146 0.60148 1.2784 1.9125 0.83766 2.0843 3.4524 2.0494 0.54459 2.6251 1.1566 0.008892 1.7586 1.2632 0.58992 1.3849 0.45956 0.47101 1.2012 0.2877 0.061937 0.80986 0.035877 -1.058 1.2374 0.31698 0 0.0077783 0.094648 0.31049 0.28501 0.0084743 0.00458 0.1022 0.047552 0.31631 -0.33102 0.038913 1.3764 -0.028494 3.0602 0.088258 0.015447 1.5905 0.28074 1.8493 0.38403 0.8298 1.7043 -0.035733 -0.42243 1.7172 0.67752 1.323 0.96452 0.28675 0.0062481 0.99571 2.5015 1.3269 1.0797 -0.60649 0.75676 0.72934 1.3816 0.1607 0.062651 2.4638 0.035665 0.1625 Deletion Peak 11 - CN values 4p15.2 chr4:20726855-22351071(probes 377360:378525) chr4:20727465-21952452(probes 377361:378274) chr4:21195018-21556768(probes 377720:377967) 8.3319e-05 8.3319e-05 Actual Copy Change Given -0.9473 0 -0.39118 -0.80036 -0.086651 -0.34469 -0.67958 -0.53774 -0.13471 -0.50888 -0.20685 -0.065179 -0.013681 -0.29035 -0.47533 -0.14772 -0.36929 0.0035676 -0.17525 -0.23985 -0.48355 -0.0038379 -0.34744 -0.010232 -0.26649 1.0908 -0.75599 -0.70585 0.0032382 -0.47723 -0.084926 -1.2746 1.885 -0.75219 -0.40259 -0.0059522 0.4996 0.0049969 -0.54371 0 -0.039937 -0.032178 -0.027124 -0.23594 -0.0019399 -0.074472 -0.17454 -0.027351 -0.084262 0.1595 0.44901 -0.17474 -0.84587 0.040468 -0.32368 0.015031 -0.014894 -0.43226 -0.37302 0.73644 -0.34423 0 0.0058309 -0.27663 0.017963 -0.32455 -0.011799 -0.35168 -0.54834 0.078436 -0.045441 -0.020357 0.00015617 -0.072675 -0.23545 -0.70827 -0.016017 0.22962 -0.0034627 -0.47712 -0.28513 0.025952 -0.54754 -0.1596 -0.28156 0 -0.13445 -0.01904 -0.46897 -0.49423 -0.44174 0.033127 -0.1985 -0.56346 0.2279 -0.37988 -0.43706 -0.73187 -0.71897 -0.45179 0 -0.012024 -0.40318 -0.053519 -1.2929 -0.061152 0.092605 -0.13872 -0.93069 -0.40612 -0.44642 -0.10697 -0.021784 0.014609 -0.3799 -0.73246 -0.068663 0.22453 -0.34159 0.2442 -0.9177 -0.53906 0 -0.46568 -0.732 0.72646 -0.46759 -0.26276 -0.64687 -0.46344 -0.48586 0.047268 -0.13764 -0.36147 0.037217 -0.084793 -0.050641 -0.27504 -0.39157 -0.15131 -0.013503 -0.20908 0.39165 -0.63972 0.24793 -0.3471 -0.030131 -0.46185 -0.55917 -0.27671 -0.39479 0.028763 -0.48726 -0.010646 -0.53276 -0.40804 -0.01849 -0.56106 -0.1067 0.70064 -0.44599 -0.26853 -1.2929 -0.11155 -0.53784 -0.75917 0.0090312 -0.016841 -0.45939 -0.51075 -0.5096 -0.49757 -0.44921 -0.018843 -0.35248 0.072377 0.19584 -0.025072 -0.47892 -0.18156 -0.048072 -0.613 0.29326 -0.028355 Deletion Peak 12 - CN values 4q22.1 chr4:91271445-93240505(probes 415174:416106) chr4:91035787-92525194(probes 415011:415793) chr4:91024035-92575500(probes 415004:415821) 5.7334e-42 4.6419e-41 Actual Copy Change Given -0.86664 -0.4097 -0.88024 0.040468 -0.57694 -0.34469 -0.26354 -0.46855 -0.24919 -1.0804 -0.20685 -0.029584 -0.0034669 -0.29035 -0.47533 -0.1143 0.20121 0.71757 -0.068663 -0.080807 -0.43615 0.0027745 -0.28976 0.00013863 -0.24958 0.45615 -0.74811 0.017963 0 -0.45854 -0.084926 -0.64405 0.27663 -0.7395 -0.35681 -0.0059522 -0.053881 0.0044411 -0.53287 0 -0.039937 -0.55617 -0.027124 -0.2201 -0.0062286 -0.014868 -0.17454 -0.027351 0.11976 -0.87751 -0.92077 -0.17474 -0.20361 0.040468 -0.31891 0.047836 -0.014894 -0.065195 0.02566 -0.063838 -0.33248 0 -1.0872 -0.63225 -0.28988 -1.2699 -0.011799 -0.30839 -0.55697 -0.6375 -0.045441 -0.54659 0.00015617 -0.069064 -0.25249 -0.70154 -0.015466 -0.53561 -0.56406 -0.42177 -0.2066 -0.61153 -0.51373 0.046723 -0.27488 0 0.23117 -0.01904 -0.44799 -0.2005 -0.43973 -0.23006 -0.32379 -0.56346 0.081102 -0.53541 -0.4152 -0.20037 -0.69251 -0.0091286 -0.40992 -0.022469 -0.42931 0.017919 -0.72217 -0.050633 -0.21935 0.0094919 -0.92293 -0.40749 0.03408 -0.10697 -0.00027724 0.014609 -0.32013 0.11437 0.59926 -0.51794 -0.062226 -0.67288 -0.23789 -0.48302 -0.57696 -0.44832 2.6215 0.21328 -0.42811 -0.48165 0.084498 -0.90964 0.030873 0.047268 -0.25282 -0.36147 0.042449 -0.079476 0.029606 -1.2929 -0.39157 -0.12875 -0.013503 -0.20908 -0.21774 -1.2929 0.21039 -0.33486 -0.45211 0.11844 -0.52849 -0.2474 -0.39479 -0.33756 -0.48523 -0.021373 0.50602 -0.38649 0.00027728 -0.49955 -0.1067 0.65864 -0.37042 -0.26853 0.021323 -0.11155 -0.031768 0.2061 -0.17957 -0.016841 0.4294 -0.4713 0.016006 -0.49225 -0.45201 0.010241 -0.33364 0.12373 -0.18298 -0.020961 -0.47194 -0.1827 -0.025072 -0.048515 -0.26396 -0.018628 Deletion Peak 13 - CN values 4q34.3 chr4:170189485-191154276(probes 458174:467485) chr4:178097484-178103524(probes 462447:462448) chr4:170791901-191154276(probes 458470:467485) 0.000831 0.22393 Actual Copy Change Given -0.40174 0.034254 -0.86263 0.025531 -0.086651 -0.33369 0 -0.44545 -0.24919 -0.51208 -0.38504 -0.051451 -0.0034669 -0.29035 0.060936 -0.1143 0.20121 0.1085 -0.068663 -0.092742 -0.47554 0.0027745 -0.33664 0.3033 -0.25185 0.4657 -0.7651 0.017963 0 0.10555 -0.099604 0.03031 -1.0788 -0.71888 -0.37098 -0.0059522 -0.053881 -0.74777 -0.53154 0 -0.039937 -0.54179 -0.027124 -0.2201 -0.0062286 -0.013677 -0.15618 -0.032087 0.11976 -0.87393 -0.4549 -0.17702 -0.1995 0.040468 -0.32112 0.6926 -0.024092 -0.065195 -0.0061924 -0.7422 -0.31564 -0.73827 0.018243 -0.63225 -0.12512 -0.24272 -0.0042929 -0.40196 -0.52143 -0.38217 -0.026245 -0.010177 0.005065 -0.31412 -0.25249 -0.70352 -0.020138 -0.54088 -0.76201 -0.42177 -0.33364 0.0083351 -0.51404 0.027792 -0.2726 -0.0027707 -0.11438 -0.01904 -0.45179 -0.21676 -0.43973 -0.23229 0.20702 -1.2382 0.081102 -0.53713 -0.42931 -0.19074 -0.69403 -0.0091286 -0.41421 -0.033677 -0.44798 0.087054 0.029747 -0.047124 -0.22071 0.0094919 0.02958 -0.4107 0.015866 -0.10697 -0.01727 0.014609 -0.33035 0.17111 0.59586 -0.56674 0.33861 -0.67288 -0.26805 0.03014 -0.5814 -0.46454 -0.26329 1.3198 -0.44608 -0.49707 -0.64241 -0.01409 1.3227 -0.043461 -0.57216 -0.36542 0.042449 -0.71051 -0.39185 -0.5349 -0.39157 -0.15311 -0.03592 -0.18446 -0.20223 -0.59454 0.12513 -0.33486 -0.022469 -0.47173 -0.53906 -0.24168 -0.39479 0.029325 -0.46865 -0.019177 0.50602 -0.43366 -0.028491 -0.46472 -0.31038 0.7042 -0.33802 -0.25455 0.015866 -0.11155 -0.010491 -0.27537 -0.17436 -0.019792 -0.91522 -0.49483 -0.020453 -0.49715 0.41597 0.029281 -0.33918 0.12373 -0.18298 -0.034668 -0.010738 0.072538 -0.025072 -0.08273 0.30617 -0.62245 Deletion Peak 14 - CN values 5q12.1 chr5:58998410-59780946(probes 498965:499351) chr5:58260298-59818245(probes 498420:499376) chr5:50289497-93894337(probes 493399:517211) 1.0706e-31 1.0706e-31 Actual Copy Change Given -0.43453 0.011261 -0.88627 -0.78041 -0.14824 -0.45663 -0.2624 -0.48344 -0.49694 -1.1084 -0.18156 -0.079609 0.0036034 -0.6877 -0.48585 -0.42134 -0.039258 -0.411 0.47856 0.26577 -0.48911 0.0011093 -0.29863 -0.32368 0.022585 0.051387 0.0098663 0.00066586 -0.00050739 -0.47807 0.17106 0.01419 -0.18496 -0.67811 -0.39997 -0.015191 -0.033814 0.012795 -0.71288 -0.016017 -0.0034627 0.041175 -0.19312 -0.2537 -0.00075387 0.061157 0.14028 -0.46575 0.22638 0.16055 -0.45072 0.10089 -0.20796 -0.13975 -0.33272 -1.2929 -0.013518 -0.79662 -0.67399 -0.058866 -0.33179 -0.69794 -0.0081624 -0.65631 -0.15285 -0.26101 -0.0049844 -1.0127 0.021463 0.1071 -0.057731 -0.57779 0.0028426 -0.56196 -0.058596 -0.70833 -0.10053 -0.52542 -0.20012 -0.47215 -0.46536 -0.59711 0.059937 -0.35577 0 -0.0047079 -0.12823 -0.23463 -0.45125 -0.46515 -0.43756 0.033972 -0.12095 -1.1973 -0.12694 -0.1449 -0.42778 -0.2154 0.073833 -0.44814 0.017264 0.08739 -0.44566 -0.40995 -0.75308 -0.87751 -0.29248 -0.071477 -0.85458 0.39811 -0.40628 0.049824 0.001803 -0.28869 0.0067294 -0.71048 -0.027124 -0.58677 0.016425 -0.66892 -0.27846 -0.52266 -0.58718 -0.46628 -0.30515 -0.42996 -0.44059 -0.53602 -0.69857 -0.48512 0.0066653 -0.067726 -0.54267 -0.35783 -0.65269 -0.71399 -0.024251 -0.044822 -0.077279 -0.17433 -0.017116 -0.06084 -0.23715 -0.35362 -0.37437 -0.34044 -0.058327 -0.45125 -0.56223 -0.25805 0.13585 -0.35772 0.6559 -0.011473 -0.16309 -0.043059 -0.012943 -0.47986 -0.61882 -0.83696 -0.37008 -0.27547 -0.13691 0.033831 -0.37369 -0.473 -0.22071 -0.034359 -0.034752 -0.44426 0 0.0052749 -0.45576 0.031674 -0.34148 0.26106 -0.19291 0.0099266 -0.00013862 -0.026443 -0.32739 -0.61289 -0.2744 -0.10618 Deletion Peak 15 - CN values 6p25.3 chr6:1608837-2624052(probes 568031:568723) chr6:1621405-2252425(probes 568034:568450) chr6:1-28100639(probes 567522:585562) 2.0317e-23 2.0317e-23 Actual Copy Change Given 0.47976 0.053521 -0.51043 -0.80658 -0.20747 0.023426 -0.43355 -0.32263 0.17664 -0.62636 0.035163 0 0.025386 -0.305 -0.06142 0.032281 -0.0016629 0.059964 0 -0.60709 -0.49726 0.0012481 -0.35863 0 0.027497 -0.20871 -0.0045702 0.015447 -0.0039692 0.49044 -0.053341 -0.66522 -1.2929 0.61027 -0.40462 0.11917 2.1373 -0.0022168 0.023286 0.040044 -0.0040162 -0.50842 -0.39263 0.069095 0.00041593 0.064511 -0.18169 -0.77682 -0.20998 0 -0.47944 0.09159 0.099288 0 -0.31529 0.029184 0.0040465 0.011497 0.33301 -0.74525 -0.15549 -0.69785 -0.6276 -0.26347 0.39562 0.039828 0.060508 -0.48439 0.13835 0.088341 -0.0674 0.45044 0.01398 -0.30909 0.016146 0.27726 0.29294 0.1974 -0.69051 -0.3371 0.11169 -1.2746 -0.53943 -0.15565 -0.30004 -0.0024938 0.47942 0.28105 0.058224 -0.36363 -0.46972 -0.034359 -0.31949 -0.0073339 0.10237 -1.0545 -0.22096 1.1035 0.038206 -0.95261 -0.013953 -0.38392 0.1619 0.25506 0.0095883 -0.91672 -0.24618 0.15681 0.99298 0.011958 -0.43474 -0.099209 -0.012438 0 0.0051999 -0.039352 -0.011335 0.45956 0.020203 -0.0026322 -0.28465 -0.53885 0.14901 0.35137 0.3856 -0.063703 -0.31377 -0.22896 -0.63108 0.88426 -0.011887 -0.018078 -0.58692 -0.50784 -0.64959 -0.71729 -0.014366 0.65995 -0.75595 0.067232 -0.97253 0.27237 0.022455 -0.088592 -0.077878 -1.1273 -0.5796 -0.46099 0.096961 -0.26432 -0.012488 -0.74556 -0.94622 -0.60849 -0.14682 0.034818 -0.78176 -0.38973 0.052952 0.064654 0.039195 0.10278 -0.10657 -0.0026322 -0.42396 -0.75314 0.057083 0.0040243 -0.90434 0.26357 -0.019589 -0.54844 -0.46807 0.019879 0.346 0.030451 -0.20078 0.036653 0.043865 0.1848 0.22299 0.41073 -0.26468 -0.32646 Deletion Peak 16 - CN values 6q16.3 chr6:64422619-119216880(probes 602253:632723) chr6:100950856-101332214(probes 622497:622635) chr6:100973378-101496387(probes 622507:622724) 0.036953 0.07459 Actual Copy Change Given -0.41443 -0.027671 0.48509 0.034959 0.29979 0.026514 0.22839 0.044432 0.083631 0.026654 0.040044 -0.16027 -0.012166 -0.28857 -0.48634 0.051103 -0.0016629 -0.066092 0 0.0051359 0.32524 0.0012481 -0.51259 -0.0074892 0.024408 0.015898 0.017683 0.026373 0.0014339 -0.47311 -0.41102 0.018663 -0.083999 -0.82326 -0.40639 0.11917 -0.029857 -0.0008316 -0.70019 -0.010508 0.031718 -0.016704 0 -0.20336 -0.005814 0.064511 -0.18169 0.15439 -0.078411 0 0.0041632 -0.48102 0.097202 0.057796 0.024829 0.010285 -0.026335 0.070226 -0.016165 -0.73819 0 -0.011198 0.0084743 -0.2201 -0.068127 0 0.020763 -0.097781 0.10235 0.1052 0.0061002 -0.022277 -0.0053315 -0.31762 0.016146 0.73948 0.29294 0.26765 0.18135 0.042455 0.22095 -0.081605 -0.52981 -0.14809 -0.10184 -0.0024938 -0.027808 0.14581 0.033549 -0.25213 0.23861 -0.13018 -0.30513 0.021183 0.10237 0.68515 -0.27846 0.27916 0.068359 0.0052749 0.082052 -0.0011087 -0.45896 -0.099119 0.037641 -0.047936 -0.21763 -0.1143 0.031081 -0.25298 1.0919 -0.099209 0.61317 -0.30569 0.0051999 0.0061515 -0.045364 -0.28251 -0.36725 0.5738 -0.90896 -1.1089 0.07207 -0.048883 0.087469 -0.029175 -0.018353 -0.22896 0.063509 -0.51208 -0.44491 -0.018078 -0.089529 -0.36556 0.054376 0.013492 -0.014366 -0.44264 0.03517 -0.3668 0.85363 0.37801 -0.24077 -0.006505 -0.076545 0.010272 0.22253 -0.42331 0.049398 -0.22268 -0.012488 -0.34893 -0.48502 -0.037898 -0.58284 -0.0054939 -0.012578 -0.39051 -0.005334 -0.02562 0.038206 -0.28739 -0.15919 0 -0.42506 -0.23715 -0.10072 -0.022744 0.49891 0.062508 -0.0089906 -0.0123 0.40928 0.020999 0.346 0.013266 -0.66793 0.03214 -0.47913 -0.20871 -0.34079 -0.031942 0.022461 -0.31155 Deletion Peak 17 - CN values 6q26 chr6:161693099-163153207(probes 659118:659764) chr6:161767520-163153207(probes 659159:659764) chr6:162132257-162136708(probes 659462:659463) 0.00073804 0.0021474 Actual Copy Change Given -0.45377 0.48045 0.48509 0.024689 0.31354 0.091155 0.14102 0 0.43513 -0.014366 0.033419 -0.049289 -0.012166 -0.28857 -0.48792 0.051103 -0.0016629 -0.088482 -0.078943 0.027497 1.1149 0.0012481 -0.034086 -0.0095426 0 0.03543 0.017683 0.016565 0.0014339 -0.50701 -0.40506 0.018663 1.1972 -0.037082 0.35757 0.11917 -0.016979 -0.0008316 -0.70847 -0.42156 0.031718 -0.016704 -0.0084385 -0.20336 -0.0087146 0.064511 -0.18178 0.12732 -0.078411 -0.0092666 -0.501 -0.49246 0.097202 0.011261 0.0066653 -0.027463 -0.011176 0.070226 -0.016165 1.1923 -0.030404 -0.019388 -0.027808 -0.3105 -0.086916 -0.043266 0.020763 0.25386 0.032124 0.1052 0.054437 -0.073446 -0.0053315 -0.34767 -0.80086 -0.0087146 0.29963 0.23163 0.18419 0.042455 0.22095 -0.70702 -0.55 -0.14809 -0.10184 -0.0024938 -0.027808 0.13909 0.038347 -0.27798 0.23861 -0.14451 -0.30345 0.026935 0.27505 0.67252 -0.30733 0.28977 0.041175 0.0052749 0.5135 0.0020805 -0.48218 0.40189 0.0069435 0.76792 -0.23496 -0.15739 0.0024705 -0.21045 -0.43918 -0.20453 -0.027535 -0.31106 -0.0075451 0.0061515 -0.036265 -0.31225 -0.36725 0.5539 0.03863 -0.47046 0.63075 -0.48775 -0.34338 0.47598 -0.018353 -0.22896 0.057511 0.79065 -0.0031859 -0.018078 -0.089529 0 0.04259 0.013492 -0.014366 -0.4786 0.011748 0.055658 0.8122 0.37801 -0.24077 -0.029448 -0.041567 0.010272 0.074552 0.086811 -0.54804 -0.24448 -0.0078579 0.031295 -0.49944 -0.03245 -0.58905 -0.48365 -0.0020784 -0.4086 -0.005334 0.010564 0.071859 -0.29934 -0.80997 -0.0085766 0.33593 -0.10303 -0.14427 -0.020549 0.37528 0.0375 -0.0089906 -0.011887 -0.030813 0.020999 0.33901 0.011261 -0.18537 0.03214 -0.0086854 -0.21615 0.18012 -0.024699 0.054803 -0.11456 Deletion Peak 18 - CN values 7q31.1 chr7:110746146-111366370(probes 719619:719646) chr7:110236682-111354928(probes 719361:719640) chr7:109133055-159138663(probes 718724:744493) 4.1663e-30 2.0317e-23 Actual Copy Change Given -0.44167 -0.086386 -0.27069 0 -0.39542 -0.25611 -0.065313 -0.19249 0.35512 -1.1151 -0.50194 -0.18597 -0.0015285 0.084209 1.2553 -0.14849 -0.005814 -1.2929 -0.18865 0.042166 -1.1194 0.0016642 0.30953 -0.34412 -0.20585 0.23442 0.0098663 -0.67508 0.00032435 -0.51063 0.16895 0.011261 -0.09433 0.022304 0.32737 0.01433 1.0657 -0.0020784 -0.69468 0.018103 0.10133 0.43936 0.23674 2.3669 -0.0038779 -0.0090965 -0.18043 -0.037987 0.22916 -1.0103 0.85423 0.058224 0.65026 -0.21354 0.33947 0.98432 -0.0089686 0.059064 -0.66652 -0.044415 0.14757 0.0030522 0.048972 -0.4108 -0.083997 1.4265 -0.84947 0.022304 0.068091 -0.33773 0.021383 -0.65198 -0.64128 -1.0683 0 0.25261 0.21453 -0.55046 -1.2929 0.16026 -0.66142 -0.58019 -0.77056 -0.17054 0.12093 0.00083195 0.067805 -0.036401 -0.46738 0.25095 0.22515 0.035353 0.41478 1.1123 0.20045 -0.23538 0.27411 0.72622 0.04259 -0.45029 1.2001 0.56205 -0.43398 0.62855 0.79039 0.35643 -0.20482 -0.12421 -0.9418 1.1488 0.44596 -0.64734 -0.014916 0.0098669 -0.32458 0.72305 0.59782 0.11345 -0.38011 0.0076392 0.32398 0.49649 0.04652 0.43699 0 0.40978 -0.0004216 0.31932 0.045849 1.3008 -0.28976 0.070099 0.32709 -0.047936 -0.6384 -0.031359 0.48234 0.49407 0.58982 -0.13096 -0.025346 0.32463 0.83492 0.17739 -0.058327 0.34031 -0.31599 -0.44297 0.018103 0.52888 0.42917 0.017963 0.28625 -0.62083 0.22777 -0.096572 0.74371 0.036512 -0.18509 1.1919 0.28897 -0.22965 0 -0.10618 -0.071071 0.10989 0.20519 0.68193 0.40984 0.022725 0.44003 -0.49094 2.7096 -0.71125 -0.34308 0.27379 0.36571 0 0.0040132 0.20534 0.21453 0.13565 -0.19687 0.13524 Deletion Peak 19 - CN values 7q36.3 chr7:157210222-158385117(probes 744009:744492) chr7:157327529-158385117(probes 744078:744492) chr7:109133055-159138663(probes 718724:744493) 1.2155e-13 6.3736e-05 Actual Copy Change Given -0.46244 0.027357 -0.28346 -0.048342 -0.39542 -0.15515 0.034818 -0.41344 -0.10342 -1.1269 0.19725 -0.22194 -0.0015285 0.084209 1.2176 -0.26298 -0.005814 0.025277 -0.18257 -0.15336 0.091155 0.0016642 -0.022881 -0.34412 -0.2463 0.23442 -0.0063674 -0.69776 0.00032435 -0.020393 -0.38067 -0.012576 -0.092215 -0.859 0.30016 -0.39441 -0.13044 -0.00013862 -0.71817 0.015308 0.054518 0.43936 0.23106 -0.31389 -0.0038779 -0.0090965 -0.18043 0.39933 0.22916 -0.88023 0.40127 0.026514 0.040892 -0.21701 0.010424 0.9237 -0.0089686 -0.0076805 -0.69528 -0.77771 0.14533 -0.71256 -0.016017 -0.52777 -0.15503 0.052308 -0.63443 -0.39675 0.068091 -0.35515 -0.037139 0.34915 0.0089603 -0.33848 -0.087977 0.23597 0.20549 -0.58608 -0.76424 0.1258 -0.14824 -0.61834 0.0083351 -0.19773 0.12491 0.00083195 0.51874 -0.036401 -0.99339 0.23349 0.23395 0.030732 0.36444 -0.023703 0.20244 -0.30369 0.27411 -0.74482 -0.035993 0.015447 -0.43908 0.56205 -0.43398 -0.4315 0.73835 0.89748 -0.091949 -0.15414 -0.95306 -0.42658 0.37232 -0.35715 -0.014916 0.0098669 -0.41833 0.72305 0.60449 -0.62493 -0.43713 0.65645 0.63418 -0.53409 0.023107 0.35202 0.019439 1.1766 0.4257 0.28358 0.045849 -0.0084385 0.8351 0.069956 0.30207 -0.047936 -0.6384 -0.024661 -0.44394 1.5307 -0.045026 -0.13135 -0.038034 0.32463 -0.85456 0.092025 -0.089169 0.34031 -0.72093 0.53151 0.038065 0.52363 0.43423 -0.019457 0.29342 -1.2334 0.24187 0.041317 0.74371 0.39065 -0.39107 -0.90881 0.28897 0.025812 -0.16973 -0.13926 0.037076 0.16265 0.20519 0.15069 0.07671 0.90452 0.41111 -0.50318 -0.46897 -0.71125 -0.35624 0.27379 0.36571 0 0.0040132 -0.18672 0.10614 0.08388 -0.3527 0.015727 Deletion Peak 20 - CN values 8p23.2 chr8:2112968-4251283(probes 745228:746335) chr8:2784419-4854274(probes 745262:746670) chr8:1-4812592(probes 744494:746612) 2.1719e-13 5.7763e-13 Actual Copy Change Given -0.47003 -0.38973 0.11062 0.076965 -0.023566 -0.4786 -0.54619 0.1898 0.3743 -0.36602 1.2239 -0.078144 -0.6098 0.39629 0.96864 -0.4055 0.20748 -0.40681 0.18374 -0.51177 -0.51681 0.0011093 -0.11037 -0.32472 -0.13962 -0.18936 0.0049963 -0.71042 0.0042104 0.43226 -0.39569 -0.07067 3.6569 -0.64631 -0.41421 0.27931 -0.69151 -0.0024938 -0.74945 -0.41482 0.41212 -0.52266 -0.33364 -0.23704 -1.2929 0.067232 0.20733 1.4094 0.1646 -0.2396 -0.53419 0.082765 -0.51712 -0.20535 0 -0.51801 0.81477 3.6569 0.26042 1.6085 -0.3304 -0.0067813 -0.031632 0.33864 0.00079622 -0.31978 0.0030522 0.48492 -0.53754 0.043663 -0.074754 -0.61091 -0.8403 0.11418 -0.30909 -0.69758 -0.029038 0.20947 -0.24107 0.055521 1.3578 0.0012481 -0.013677 0.18978 -0.29118 0.53081 -0.13251 0.15001 -1.0198 -0.12603 -0.45565 0.025671 -0.093403 -0.029721 -0.52399 -0.22441 -0.0041546 -0.26252 -0.74412 -0.45693 -0.034223 -0.040752 -0.0696 -0.40399 0.69409 0.39432 -0.2051 0.51821 -0.93842 -0.41421 -0.45704 -0.3203 -0.026304 -0.30604 -0.03116 -0.023798 -0.023703 -0.95536 -0.43214 -0.075211 -0.98955 -0.62655 -0.021684 -0.44512 -0.018553 -0.038306 0.75815 -0.1499 0.02525 -0.50647 -0.56376 -0.11342 -0.81598 -0.47723 0.016985 -0.7028 -0.39341 -0.23973 0.21414 0.20259 -0.016429 -0.0011087 0.23955 -0.045228 -0.39553 -0.012005 0.24451 0.037076 -0.51506 0.1746 0.11897 -0.052396 -0.50898 -0.61143 -0.56147 -0.9162 -1.2929 -0.15298 0.0065262 0.0022193 0.29549 0.282 -0.61104 0.0467 -0.89955 -0.78656 -0.13199 -0.86167 -0.034359 -0.5242 -0.089234 -0.52788 -0.91146 -0.76854 -0.38165 0.66039 -0.26544 -0.75487 0.0095883 -0.040347 -0.12226 -0.63455 -0.57881 0.71773 Deletion Peak 21 - CN values 8p12 chr8:18941489-47750537(probes 754297:769207) chr8:31490622-32624361(probes 762752:763653) chr8:32019683-32257620(probes 763146:763349) 0.060925 0.21551 Actual Copy Change Given -0.9676 -0.40077 0.11062 -0.0066432 -0.023566 -0.4786 -0.51362 0.25433 0.30649 -0.34125 0.12668 -0.40853 -0.00028143 0.60546 1.011 -0.4055 0.41346 -0.40681 -0.16891 -0.51084 0.55927 0.0011093 -0.12187 -0.012576 -0.13962 -0.18936 0.0049963 -0.71042 0.0042104 0.43226 -0.38224 -0.041702 0.54576 -0.6433 -0.40396 0.29851 3.3129 -0.010232 -0.70325 -0.3983 -0.016567 -0.52266 0.21991 -0.22552 0.63646 0.067232 0.20733 1.4094 0.1646 -0.68478 -0.49746 0.085799 -0.51712 0.30745 0 -0.48432 0.84991 -0.21826 0.26042 1.3886 -0.3304 -0.0067813 -0.028081 0.38684 0.00079622 0.36272 0.0030522 0.48492 -0.53754 0.049447 -0.074754 0.053654 -0.00090224 0.27647 -0.30381 -0.69974 -0.029038 -0.15605 -0.24107 0.10465 0.061222 -0.61239 0.0077783 0.23287 0.10009 0.53081 -0.13949 0.15001 -0.97381 -0.52205 -0.45565 0.025671 -0.093403 -0.051856 -0.52399 3.5902 0.17162 -0.18647 0.11169 -0.45409 -0.034223 0.073546 -0.0696 -0.4171 0.75968 0.51159 -0.2051 0.57522 -0.93527 0.43631 -0.43355 -0.043466 -0.026304 -0.30604 0.33682 0.011861 -0.71319 -0.55957 -0.37234 -0.72668 -0.92993 0.0114 -0.048109 -0.45804 0.038707 0.36362 0.79374 -0.1499 0.051103 -0.48281 -0.018765 -0.040209 -0.48057 -0.47279 0.016985 0.057796 -0.39341 -0.23973 0.21414 0.20259 -0.0020784 -0.0011087 -0.66494 -0.044551 0.21576 -0.012005 0.25496 0.039195 -0.51506 0.1746 -0.36129 -0.0501 0.40194 -0.61681 -0.56147 -0.39475 0.75586 -0.059177 0.026935 0.0022193 0.29549 0.282 2.5105 0.0467 -0.42364 0.4777 -0.16031 1.4243 0.47306 -0.50328 -0.053476 -0.51352 -0.91146 -0.71644 -0.34802 -0.0089906 -0.28896 -0.41223 0.032986 0.036792 -0.12226 -0.03426 -0.57881 -0.32263 Deletion Peak 22 - CN values 9p23 chr9:7887952-12687261(probes 829883:831851) chr9:9437437-9442740(probes 830840:830842) chr9:1-27518025(probes 825605:842414) 2.2321e-08 0.17609 Actual Copy Change Given -1.2929 -0.45907 -1.2929 -0.028765 -0.49871 0.32818 0.48664 -0.4805 -0.39064 -0.53236 -0.47628 -0.30651 -0.0034669 0.07369 0.040326 0.073258 0.012237 -0.0016366 -0.18766 -0.36147 -0.47818 -0.0030785 -0.31762 0.30042 -0.58274 -0.30381 0.76232 3.6569 0.0039325 -0.49193 -0.39263 -0.6418 0.36788 -0.73679 -0.42789 -0.38504 -0.061823 0.00055459 -0.0076101 -0.40407 0.094201 0.13066 -0.34973 -0.25817 0.0071424 0.075128 -0.18433 -0.015006 -0.41542 -0.47067 0.27411 -0.47427 0.072109 -0.26384 0.015028 -0.95028 -0.018807 0.022288 -0.080684 -0.73538 -0.31926 -0.69866 -0.0024938 -0.30169 -0.1517 0.015933 0.27568 -0.12572 -0.1134 -0.3948 -0.036479 -0.56898 -0.0013179 0.15129 0.037924 -0.20324 -0.08612 -0.13536 -1.1572 -0.19449 0.22268 -0.66087 -0.53226 0.021485 -0.28406 -0.0044312 -0.073343 -0.075878 -0.46525 -0.4394 0.1649 -0.2319 -0.047666 -0.014778 0.90895 0.73208 0.29088 -0.72535 -0.71563 0.31225 0.40477 -0.37279 -0.49642 0.15333 -0.75504 2.1222 -0.23276 -0.2932 -0.92333 -0.40462 -0.39797 -0.11443 -0.020824 -0.30039 -0.37398 -0.73282 -0.028901 -0.58215 -0.36646 0.0020805 -0.30098 -0.54663 -0.60306 -0.40992 -0.71287 -0.37108 0.42868 -0.57585 0.5231 0.0086135 -0.46901 -0.10526 1.1703 -0.39786 -0.65174 -0.70587 0.92778 -0.04338 -0.065247 -0.59973 0.57773 -0.033405 -0.58097 -0.5715 -0.062898 -0.11155 -0.27595 0.066372 -0.52788 -0.2775 0.0010586 -0.71986 -0.49391 -0.60293 -0.55777 -0.93179 -0.014654 -1.0259 -0.34171 -0.39163 -0.68067 -0.89741 -0.60916 -0.11277 -0.3282 -0.50225 -0.43061 -0.043718 0.46058 -0.23851 -0.5162 -0.02562 -0.043059 0.4093 0.034113 -0.43318 0.0122 -0.72308 -0.95909 -0.21503 0.01435 -0.62468 -0.37696 -0.11704 Deletion Peak 23 - CN values 9p21.3 chr9:21931610-22003135(probes 838993:839032) chr9:21959052-21997722(probes 839015:839028) chr9:1-27518025(probes 825605:842414) 3.8792e-136 1.4171e-131 Actual Copy Change Given -1.2929 -0.44868 -1.2929 -0.034904 -0.49871 0.19521 0.03031 -0.4805 -0.39064 -1.0727 -0.47628 -0.30651 -0.0034669 -0.66559 0 -0.67591 -0.635 -1.006 -0.1827 -0.3933 -0.47818 -0.0030785 -0.30557 -0.756 -0.9975 -0.3031 -1.2929 -1.2929 -0.00091196 -1.2929 -0.38973 -1.2118 0.36097 -1.2929 -1.2929 0.0351 -0.027535 0.00055459 -0.0076101 -0.40407 0.094201 -0.52307 0.062508 -0.25817 0.0071424 0.075128 -0.18433 -0.015006 -0.90388 -0.47067 -1.2929 -0.47427 0.072109 -0.26384 0.015028 -0.95028 -0.018807 0.046684 -1.2929 -0.73538 -0.31926 -0.69866 -0.0024938 0.10614 -0.1517 -0.64767 -0.32565 -0.116 -0.1134 -0.88977 -0.036479 -0.56898 -0.0013179 -0.15579 0.037924 -0.20324 -0.11501 -0.13536 -1.0747 -0.19449 -0.59653 -0.014228 -1.2929 -0.83105 -0.28406 -0.0044312 -0.11756 -0.39441 -0.46525 -0.4394 0.1649 -0.2319 -0.047666 -0.014778 -1.2929 -0.56356 -1.2143 -0.72535 -1.2929 -0.90707 -1.1825 -0.74011 -0.49642 -1.053 -1.2929 2.1222 -0.86468 -0.2932 -1.2929 -1.169 -1.2595 -0.95428 -1.1853 -0.60931 -1.0525 -1.2929 -1.2929 -0.58215 -1.0879 -1.2929 -1.2929 -1.2929 -0.59139 -1.2929 -1.2929 -1.2164 -1.2929 -1.2929 -1.2847 0.0086135 -1.2929 -0.10526 -1.2929 -1.0147 -0.65174 -0.70587 -1.0129 -0.010508 -0.065247 -0.59973 -0.87969 -0.033405 -0.24118 -0.3925 0.077862 -0.11155 -0.27595 0.066372 -0.52788 -1.2382 0.0010586 -1.06 -1.2419 -0.60293 -0.55777 -0.40008 0.0022193 -1.2929 -0.87743 -1.2929 -0.061006 -0.30487 -1.2081 -0.11277 -1.2492 -1.2929 -0.81909 -0.040752 -1.2929 0.11609 -0.5162 -1.013 -1.2929 -1.2929 -1.0316 -0.43318 -1.0632 -0.72308 -1.2929 -0.65165 -1.2929 -1.2929 -0.85337 -0.11704 Deletion Peak 24 - CN values 10p15.3 chr10:1-6469154(probes 893270:897217) chr10:1-484158(probes 893270:893316) chr10:1-645915(probes 893270:893324) 0.041463 0.10368 Actual Copy Change Given -0.47554 -0.090229 -0.45447 0.45786 0.034254 -0.7957 0.48182 -0.018353 0.2904 -0.6983 0.20656 0.1628 0.54294 -0.30275 -0.0013858 -0.1881 -0.005261 0.31453 0.24981 -0.14116 0.045991 -0.0026322 -0.38425 -0.013677 -0.26047 -0.4008 -0.034453 -0.022606 -0.0046609 -0.065581 -0.38939 -0.0034627 0.35446 -0.037762 0.026654 -0.0040162 0.027778 -0.0084385 0.013492 0.026654 -0.070536 -0.46387 -0.014641 0.12402 0.0011093 -0.011887 0.30314 0.0017121 -0.15835 0.38294 -0.48071 -0.48365 -0.19475 0.27096 -0.31786 0.25887 0.0022415 0.0060929 -0.023576 -0.049019 -0.316 0.019643 -0.051181 -1.2929 0.046759 -0.22607 -0.028765 -0.031086 0.085799 -0.073934 0.016905 -0.60067 -0.0045017 0.13909 -0.013264 0.86592 0.23086 0.1901 0.075559 0.065948 0.16921 0.48958 0.50741 0.035405 -0.016704 0.00083195 -0.02603 0.0311 0.86394 -0.23753 -0.12719 -0.24752 0.065656 -0.051451 -0.11991 0.14607 -0.45018 1.7363 -0.00097017 -0.005261 -0.41465 -0.0098185 1.1466 0.2 -0.039258 -0.03817 -0.16357 -0.0042502 0.026909 0.46724 -0.046989 -0.0029489 0.57916 -0.32156 0.74336 0.038833 -0.72075 -0.9816 -0.42538 -0.74032 0.45615 -0.54027 0.012478 0.34778 0.34381 -0.77583 -0.12668 -0.58186 -0.11077 0.0055529 -0.48659 0.058367 -0.58085 -0.69965 0.0058309 -0.041974 -0.32925 1.7785 -0.050303 0.17618 -0.010094 -0.016979 0.099268 0.3628 -0.43094 0.0052749 0.22222 0.54294 0.057653 0.0076876 0.00092052 0.0056919 0.36362 -0.72782 -0.2233 -0.39608 -0.0044312 0.19573 0 0.051891 0.30298 0.030029 0.013772 0.11726 0.38687 -0.21076 -0.033677 -0.0076101 -0.13716 0.20412 0.42906 -0.53449 -0.45147 -0.027441 -0.0044312 0.19938 -0.21494 -0.014503 -0.46035 -0.22306 0.95795 1.0249 -0.57348 0.0033299 Deletion Peak 25 - CN values 10p11.21 chr10:34059131-35328087(probes 916518:917249) chr10:34397064-35128523(probes 916762:917230) chr10:34527811-34849656(probes 916881:917069) 9.2419e-07 1.965e-06 Actual Copy Change Given 0.58274 -0.082668 -0.35601 0.31212 0.034254 -0.23667 -0.3551 0.017544 0.2904 0.015727 0.20656 0.14414 0.5272 -0.30275 0.012934 -0.1881 -0.005261 0.045593 -0.66698 -0.12148 0.045991 -0.0026322 -0.36484 -0.013677 -0.26047 -0.4008 0.0022187 -0.022606 -0.0046609 0.9009 -1.0409 -0.0034627 0.35446 -0.94379 0.026654 -0.012024 -0.65314 -0.0084385 0.013492 0.026654 -0.070536 -0.13665 -0.014641 0.12402 0.0004289 0.0065904 0.58256 -0.013905 -0.1835 0.38294 -0.48071 0.097688 -0.19475 0.49165 -0.31786 0.25887 -0.0033867 0.0060929 -0.023576 0 -0.032178 0.019643 -0.039561 3.4487 0.03369 -0.23 -0.0029091 -0.031086 0 -0.073934 0.016905 0.47794 -0.0045017 0.096099 -0.013264 -0.01482 0.24435 0.17633 0.081755 0.065948 0.15533 -0.46344 0.50741 -0.10711 -0.016704 0.00083195 -0.052126 0.043015 0.86394 -0.059673 -0.11129 -0.1449 0.075991 -0.033694 -0.11991 0.16184 0.021323 1.5779 -0.00097017 -0.005261 -0.82578 -0.0098185 1.0887 -0.11669 0.7117 -0.41454 -0.91815 -0.0042502 0.026487 -0.40827 -0.020687 0.064511 0.58059 -0.49256 0.65835 0.087289 -0.69758 0.012934 -0.39642 -1.2929 0.34583 -0.5256 -1.2732 0.36592 0.18533 -0.022332 -0.119 -0.30708 -0.11094 -0.0081624 -0.47744 -0.023089 -0.54972 -0.69965 0.0058309 -0.041974 2.1488 1.5449 -0.026099 0.17618 -0.010094 0.0079175 -0.072665 0.3327 0.075991 0.0052749 0.21706 0.037782 0.032616 0.0076876 0.00092052 0.0056919 0.36362 0.017544 -0.2233 0.26844 -0.010012 0.07254 0 0.012655 0.24981 0.0041632 0.013772 0.11726 0.4017 -0.19849 -0.15073 -0.0076101 -0.45093 0.18344 0.42906 -1.1535 -0.45147 0 -0.0044312 0.21299 -0.61396 -0.73731 -0.46035 -0.22306 0.43902 1.0249 -0.55146 0.036512 Deletion Peak 26 - CN values 10q21.1 chr10:38686143-71338246(probes 919223:933838) chr10:52739810-54061437(probes 922833:923855) chr10:53358478-53360339(probes 923345:923346) 0.039099 0.11316 Actual Copy Change Given 0.23473 -0.082668 -0.84611 0.31212 0.034254 0.36821 -0.3551 0.041317 1.1749 0.016985 0.60052 0.14474 0.5272 -0.30275 0.012934 -0.1881 -0.005261 0.045593 0.001803 -0.03054 0.071822 -0.0026322 -0.35772 -0.013677 0.18359 -0.4008 -0.0011094 -0.022606 -0.0046609 -0.0092666 -0.40495 -0.0034627 0.348 1.4383 0.026654 -0.36578 0.28241 -0.0084385 0.013492 0.026654 -0.070536 -0.13665 -0.014641 0.12093 0.0004289 -0.0067813 -0.19174 -0.013905 -0.15067 0.053379 0.17815 0.097688 -0.19475 0.008892 -0.31786 0.25887 -0.0033867 -0.79311 -0.023576 0.0069435 -0.032178 0.019643 -0.60671 -0.21985 0.03369 -0.23 -0.0029091 -0.031086 0 -0.073934 0.016905 0.07461 -0.0045017 0.096099 -0.0037395 -0.01482 0.2484 0.5562 0.10293 0.065948 0.15533 -0.023155 0.50741 -0.10711 -0.016704 -0.00019672 -0.052126 0.057083 0.030873 -0.059673 -0.11129 -0.1449 0.075991 -0.0085766 -0.11835 0.16184 0.021323 1.4565 -0.00097017 -0.005261 -0.011335 -0.0029091 -0.50681 0.22602 -0.015191 0.31723 0.32753 -0.0042502 -0.8669 -0.40579 -0.41135 0.064511 -0.005814 -0.29697 -0.36777 -0.042204 -0.020001 -0.37685 -0.39642 0.008892 -0.29154 -0.54078 0.033793 -0.47727 0.18533 -0.85631 -0.119 0.075271 -0.11094 -0.45533 0 -0.023089 0.3027 -0.21711 0.0058309 -0.041974 0.02525 0.5493 -0.026099 0.17618 -0.010094 0.0079175 -0.072665 0.52013 -0.37437 0.0052749 -0.17828 0.037782 0.065083 0.0076876 0.00092052 0.0056919 0.36362 0.017544 -0.2233 -0.40086 -0.010012 0.07254 0 0.012655 0.31948 0.81279 0.013772 0.11726 0.016705 0 -0.15073 -0.0076101 -0.081628 0.21376 -0.0094046 0.0034687 -0.02562 -0.016472 -0.0044312 0.21299 -0.19766 -0.0012473 -0.46035 0.09536 -0.72137 -0.66959 0 0.48251 Deletion Peak 27 - CN values 10q23.31 chr10:89506488-92501260(probes 945136:947245) chr10:89617402-89735907(probes 945204:945393) chr10:88042531-92132870(probes 944531:946987) 0.00081373 0.0096469 Actual Copy Change Given -0.45918 -0.082668 -0.39786 0.19421 0.034254 -0.48418 -0.3551 0.020063 -0.11469 -0.53287 0.021043 0.10962 0.5272 -0.30275 -0.11297 -0.1881 -0.005261 -0.39283 0.001803 0.33788 0.048972 -0.0026322 -0.35772 -0.013677 0.18359 -0.4008 -0.0011094 -0.0066432 -0.0046609 -0.0092666 -0.37403 -0.0034627 0.34031 -0.60158 0.019643 -0.0019399 0.12889 -0.0044312 0 0.026654 -0.070536 -0.93703 -0.014641 0.12093 0.0004289 -0.0067813 -0.19174 0.00032507 -0.16217 -0.022195 -0.31517 -0.14129 -0.1911 0.46842 -0.31786 -0.4595 0.0012702 -0.79804 -0.0083112 0.017124 -0.50929 0.019643 -0.00027724 -0.82423 -0.32774 -0.22152 -0.0029091 -0.29027 -0.036129 -0.060268 -0.014691 0.075473 -0.0050549 0.0076392 -0.0037395 -0.0038544 0.28492 -0.23899 0.48251 0.065948 0.15533 -0.57891 0.50741 -0.10711 -0.016704 -0.00019672 -0.052126 0.057083 0.03031 -0.0123 -0.11129 -0.1449 0.075991 -0.0085766 -0.10092 0.12049 0.021323 -0.73757 -0.71399 -0.005261 -0.019314 -0.0029091 -0.52194 0.22602 -0.015191 0.34893 -0.044822 -0.0026369 -0.8669 -0.38962 -0.43702 0.12668 -0.005814 -0.3224 -0.3721 0.56869 -0.020001 -0.37685 -0.39642 -0.016979 -0.29154 -0.53327 -0.61223 -0.47727 0.037295 -0.17954 -0.030404 -0.022469 -0.13057 -0.46855 -0.016911 -0.023089 0.2976 -0.23863 0 -0.51568 0.02525 -0.00097017 -0.38409 -0.55296 -0.0040162 0.0079175 -0.072665 0.38184 -0.37132 0.0052749 0.21791 -0.45106 0.065083 0 0.0062873 -0.011064 0.35417 0.0098691 -0.2233 -0.39675 -0.01849 0.07254 -0.092839 0.010546 -0.37098 0.22392 0.013772 -0.079683 -0.0049767 0 -0.15073 -0.0076101 -0.085907 0.24326 -0.006505 0.0034687 -0.02562 -0.012619 -0.0044312 0.21299 -0.19766 -0.0012473 -0.46035 0.051023 -0.12108 -0.12164 0 0.25762 Deletion Peak 28 - CN values 11p15.4 chr11:1-3686943(probes 973762:974816) chr11:2981170-2986775(probes 974586:974587) chr11:1-3837204(probes 973762:974894) 0.0016785 0.0017058 Actual Copy Change Given 0.015444 -0.42068 -0.40937 -0.066252 0.079868 -0.45929 -0.055303 0.31225 0.35496 -0.52297 -0.15646 -0.11011 -0.0041587 0.078871 0.0029133 -0.14232 0 -0.39361 0.040044 0.026373 0.089416 -0.005261 -0.381 -0.0038779 -0.025756 0.26577 -0.0099571 -0.031692 0.00074035 -0.041974 0.23767 -0.022195 0.34648 -0.038714 -0.0030475 0 0.50741 -0.0040162 -0.0029091 -0.40527 -0.041838 -0.070338 0.088692 -0.26817 -0.0022168 -0.0074862 -0.19812 0.0021109 -0.26288 -0.048748 -0.53622 -0.22108 0.11884 -0.8882 -0.33225 -0.5067 -0.016883 0.015105 0.25729 -0.028628 -0.33052 -0.68606 -0.1143 -0.12148 0.042449 -0.027059 0.31049 0.013772 -0.086651 -0.38945 -0.018981 -0.58335 0.0027037 -0.31809 0.017404 -0.5719 -0.15771 -0.68633 0.48399 0.0070881 -0.015329 -0.01904 -0.52757 -0.24811 -0.10289 -0.0045695 0.35464 -0.045093 0.065656 -0.52594 0.28327 0.034536 0.19492 -0.041024 -0.50453 -0.12226 -0.23178 -0.19962 -0.72623 -0.44857 -0.41146 -0.38055 -0.218 -0.14004 -0.1143 0.64194 0.051245 -0.14927 -0.096099 -0.32843 -0.43973 -0.23545 -0.038442 -0.0088526 -0.44583 0.021086 -0.013402 -0.50639 -0.41893 -0.76587 -0.28465 -0.55266 -0.0069571 -0.47818 0.016502 -0.41641 -0.016275 0.19299 0.22076 -0.5056 -0.47681 0.0024969 -0.3262 -0.37516 0.016845 0.03214 0.32495 -0.043331 -0.047463 0 -0.0047079 0.18253 -0.25127 0.1974 -0.38962 -0.011611 -0.38134 0.047268 -0.54007 -0.23521 0.70807 -0.37426 -0.091307 0.00458 -0.21342 -0.41289 0.020903 -0.48144 -0.35977 0.00027728 -0.37335 0.28248 -0.6099 0.026373 0.30282 -0.31727 -0.28952 -0.03095 -0.94627 -0.006505 0.41045 -0.0069195 -0.45875 -0.017118 -0.35818 -0.023155 -0.21147 0.01419 -0.46632 -0.093273 -0.39029 -0.073513 0.015688 0.26475 Deletion Peak 29 - CN values 11q25 chr11:130433734-135006516(probes 1048307:1050574) chr11:133303820-133313263(probes 1050149:1050150) chr11:105827942-135006516(probes 1031601:1050574) 1.0131e-05 1.0373e-05 Actual Copy Change Given -0.024524 0.42503 -0.40992 -0.02603 -0.11191 -0.96832 -0.0020784 -0.093271 -0.082004 0.013074 -0.086518 -0.059807 -0.0021707 0.062508 0.49078 0.010703 -0.0042929 0.048005 -0.18798 -0.48722 -0.40639 -0.005261 -0.027705 -0.33929 -0.025756 -0.3447 -0.040501 -0.69989 -0.00064598 -0.090361 -0.38123 -0.6434 0.30569 0.030873 0.17272 0.013632 0.52201 -0.0041546 -0.7242 0.39181 -0.042245 -0.058454 0.093475 0.093185 -0.010922 -0.012438 -0.18584 -0.024203 -0.22539 -0.013815 -0.05725 0.35447 0.099724 -0.19675 0.32296 0.6792 -0.015169 0.025795 -0.62466 -0.017145 -0.3282 -0.69269 0.54665 -0.12525 -0.024524 -0.033749 -0.3051 0.07933 -0.036265 -0.21805 -0.018981 -0.59123 0.0027037 0.14266 0.019923 -0.98906 -0.15771 -0.15579 -0.27643 0.0058364 -0.17209 0.0087528 0.38932 -0.2606 -0.10289 -0.010223 0.34552 -0.052801 0.18132 0.46741 -0.39263 0.034677 -0.64518 -0.01037 -0.5202 -0.13083 -0.5162 -0.19962 -0.72332 -0.43528 -0.0040162 -0.054043 -0.5096 -0.062672 0.016663 -0.57265 -0.23631 -0.0081671 3.6569 -0.42898 -0.42855 -0.48302 -0.043737 -0.33214 -0.37898 -0.72143 -0.030404 -0.62732 -0.38549 -0.015329 -0.91849 -0.56366 1.0459 -0.50183 -1.1504 1.4219 0.031284 -0.062629 0.02806 -0.48144 -0.48397 -0.10526 -0.25527 0.25464 -0.037974 -0.71408 -0.31132 -1.1832 -0.77009 -0.21861 -0.0047079 0.18253 -0.078268 -0.81606 -0.056846 -0.006505 0.22746 -0.45747 -0.5797 -0.24679 0.69654 -0.74872 -0.077212 0.02806 -0.52971 0.0043021 -0.021098 0.42922 0.021043 -0.91447 -0.026988 0.25402 -0.54024 0.026373 -0.43197 -0.37155 -0.26892 1.2789 -0.52143 -0.050911 0.38006 -0.026577 -0.46067 -0.70373 -0.34664 -0.023155 -0.29464 -0.73862 -0.49233 -0.0052633 -0.38571 -0.64182 0.00083195 -0.042517 Deletion Peak 30 - CN values 12q23.1 chr12:73057951-101115327(probes 1089362:1106222) chr12:99119341-100380401(probes 1105217:1105876) chr12:99662213-99666802(probes 1105547:1105548) 0.045584 0.046604 Actual Copy Change Given -0.42429 -0.42604 -0.38545 -0.027124 0.07254 0.089851 -0.2175 -0.0024938 0.19147 -0.0012473 -0.22957 0.060749 0.00027309 -0.30991 0.021409 0.044148 0.046905 -0.38008 0.062345 -0.13816 0.31466 -0.0056757 0.11023 -0.0091286 -0.24606 -0.15554 -0.011198 -0.007376 0.00074035 0.47305 -0.38795 0 -0.055366 0.0051359 0.035665 -0.45864 -0.015191 -0.0067813 -0.68856 -0.40583 0.012934 0.048972 0.090865 -0.18886 0.011058 -0.0084385 0.066658 -0.11922 -0.046718 -0.21081 -0.015604 -0.35586 0.10162 0.071966 0.004719 -0.39074 0.0059922 -0.78464 0.27268 0.43024 -0.22908 -0.67729 -0.014778 0.027817 -0.12108 0.12616 0.015028 -0.1173 0.069095 0.051468 0.019843 -0.60541 0.0024753 -0.11965 0.019923 0.026373 -0.17234 -0.55777 -0.25552 -0.04318 -0.12486 -0.59604 0 0.062102 0.11749 0.0073609 0.7637 -0.028081 0 -0.18118 0.42469 0.0375 0.18646 0.0075394 -0.11613 0.29056 -0.037898 0.28438 -0.71684 0.00458 -0.84515 -0.00029944 0.033831 -0.086428 -0.097232 0.68323 0.1607 0.014325 -0.053668 -0.41454 -0.0099612 -0.088374 0.60413 -0.023566 0.3096 0.64273 0.6226 0.31562 0.0068044 0.57952 -0.2435 0.47255 0.07365 0 0.070895 -0.019863 0.013772 0.080601 0.048 0.41295 0.38419 0.042879 -0.24444 0.18525 -0.0081624 0 -0.11404 0.0087295 0.26339 -0.16437 -0.0030475 0 0.28189 0.49326 -0.042381 0 0.0013868 -0.4292 0.039619 0.3421 -0.013176 -0.33156 -0.51321 0.00069327 -0.14168 0.031155 -0.010784 0.017824 -0.44835 0.0073609 0.34811 0.012097 0.026514 -0.10723 -0.022272 0.0029133 0.09043 0.022024 0.1682 -0.24484 -0.023131 0.0051359 -0.45479 -0.010705 0 -0.62665 -0.11743 0.0087528 -0.46323 0.006663 -0.051721 0.42784 -0.18295 0.27206 Deletion Peak 31 - CN values 13q12.11 chr13:1-23524878(probes 1124041:1126033) chr13:19520116-19645550(probes 1124076:1124177) chr13:1-24062734(probes 1124041:1126425) 0.0041918 0.12747 Actual Copy Change Given -0.45286 0.7637 -0.022332 -0.45832 -0.44631 0.39147 0.12727 -0.48796 -0.075745 -0.0098185 -0.19512 0.24563 -0.0088568 0.081466 -0.43897 -0.14811 -0.40473 -0.82634 -0.014366 0.032281 -0.20099 -0.0024938 -0.036401 -0.32635 -0.5425 -0.28049 -0.0012479 -0.68761 0.0089393 -0.50401 0.11155 0.019783 -0.086919 1.4274 -0.4076 -0.36533 -0.048613 -0.0019399 0.14712 0.012376 0 -0.33918 0.1631 -0.25443 -0.027671 -0.067056 0.21637 0.80954 0 -0.053611 -0.055499 -0.21293 0.069239 -0.22145 0.61268 0 0.72568 0.3618 -0.14748 -0.063301 0.023566 0.010703 0.5396 -0.34159 0.0076392 -0.31838 -0.17487 0.28089 -0.026851 -0.43479 0.096878 0.48844 -0.023773 0.50689 -0.0083005 0.29199 0.63682 0.14295 0.78261 -0.029169 0.10406 -0.0034627 0.026935 0.036392 -0.31284 -0.025209 -0.13238 -0.04577 0.01447 0.12815 0.67307 -0.23618 -0.038714 -0.63557 -0.52716 -0.53997 -0.43301 -0.20858 -0.73363 -0.40364 -0.41342 -0.0083005 -0.52721 -0.23597 -0.33526 0.017124 -0.23618 -0.0099611 0.020876 -0.021235 -0.41586 -0.12838 -0.1259 -0.32251 -0.38801 0.0042057 -0.65538 0.008331 0.37463 0.019363 -0.87759 0.46212 -0.6048 0.36362 -0.72897 -0.43951 -0.0022168 -0.46035 -0.1177 -0.030131 -0.47533 0.0066653 0.29073 -0.19603 0.003191 -0.6551 0.31964 -0.054825 -0.010026 -0.16809 0.8691 0.40677 -0.26142 -0.22047 -0.076012 -0.047395 0.22653 0.076422 -0.56833 -0.43527 -0.004803 0.38601 0.073833 0.39778 0.21315 -0.42276 -0.10992 0.38325 0.0062254 -0.45961 -0.36658 -0.31264 0.016425 0.097979 -0.34664 -0.010094 -0.272 -0.78218 -0.51154 -0.49005 2.2024 -0.018557 -0.43342 -0.00087491 -0.34504 0.33658 -0.042553 -0.76407 -0.39708 -0.025896 -0.13847 -0.050678 0.66752 0.2523 Deletion Peak 32 - CN values 13q14.2 chr13:48875329-49064807(probes 1142547:1142766) chr13:48875753-49060837(probes 1142548:1142764) chr13:48679840-49183128(probes 1142439:1142842) 0.00015417 0.0033475 Actual Copy Change Given -0.96717 0.29644 0.40755 -0.45832 -0.44631 0.27379 0.12727 -0.48796 -0.075745 0.0076392 0.18798 0.27443 0.00067891 0.081466 -0.43897 -0.14811 -0.40473 -0.83015 -0.014366 0.032281 -0.20099 -0.0024938 -0.33144 -0.31856 0.22777 -0.31061 -0.0012479 -0.68761 0.0089393 0.013492 0.11052 0.019783 0.73833 -0.72509 -0.4076 -0.36533 -1.0042 -0.0019399 0.14712 0.012376 0 0.10906 0.16956 -0.25443 -0.027671 -0.067056 0.21637 0.79052 0 1.6268 -0.055499 0.10599 -0.24131 -0.17613 0.63463 0 0.72304 -0.44837 -0.14748 -0.065045 0.023566 0.65001 0.56099 -0.23031 0.0076392 0.024615 -0.17487 0.33953 0.0093109 -0.011946 0.096878 1.4234 -0.023773 0.11726 -0.0083005 -0.1393 -0.24679 -0.093931 0.78261 0.0061145 0.12603 -0.60477 0.026935 0.036392 -0.27512 -0.025209 -0.13238 -0.05251 0.01447 0.1174 0.67307 -0.23618 -0.038714 -0.58686 -0.52716 -0.53997 -0.43301 -1.255 -0.72659 -0.40364 -0.41342 -0.0083005 -0.45394 -0.19829 -0.33526 -1.2929 -0.23618 -0.0099611 0.020876 -0.045499 -0.41586 -0.11103 -0.13755 -0.29922 -0.38185 0.0042057 -0.91168 0.11316 -0.35442 0.019363 -0.20411 0.52118 -0.6048 0.40644 -1.0561 -0.42375 -0.0022168 -0.46035 -0.1177 -0.4678 -0.47615 0.0066653 0.3318 -0.1774 0.003191 -0.058505 0.31964 -0.054825 -0.010026 -0.14 0.8691 0.40677 -0.24008 -0.18748 -0.065994 -0.047395 0.25183 0.076422 0.038691 -0.30874 0.023796 0.38601 0.073833 0.39778 0.21315 -0.42276 -0.015329 0.42477 0.043192 -0.45961 -0.36658 -0.31264 0.0058595 0.097979 -0.33964 -0.010094 -0.272 -0.75374 -0.48073 -0.21206 1.9636 0.0081672 -0.027124 -0.00087491 -0.33883 0.33658 0.40323 0.012516 -0.39708 -0.025896 -0.096704 0.0023198 0.023566 0.2523 Deletion Peak 33 - CN values 13q21.31 chr13:57458876-69271491(probes 1146326:1151864) chr13:64106819-64946697(probes 1149796:1149804) chr13:64106979-64947752(probes 1149797:1149805) 0.019792 0.16727 Actual Copy Change Given 3.6569 0.27223 0.46576 -0.4152 -0.44631 0.20198 0.13169 -0.48796 -0.075745 0.0076392 -0.4476 0.27443 -0.0045737 0.081466 -0.43897 -0.14811 -0.40473 -0.83015 -0.014366 -0.022469 -0.20099 -0.0024938 -0.33144 -0.31856 0.22777 -0.31061 -0.0012479 -0.68314 0.0089393 0.013492 0.63938 0.019783 0.68849 -0.72013 -0.4076 -0.36533 0.92797 -0.0019399 0.16265 0.012376 0 0.10906 0.16956 -0.25443 -0.027671 -0.067056 0.21637 0.79052 0 0.045708 -0.055499 0.10599 -0.24131 -0.17613 0.63463 0.0066653 0.68503 -0.44837 -0.14748 -0.065045 0.023566 0.65001 0.60431 -0.23031 0.0076392 0.024615 -0.17487 0.33953 0.0093109 1.7944 0.096878 -0.54447 -0.023773 0.11726 -0.0083005 0.095217 0.58865 -0.093931 0.78261 0.0061145 0.18616 -0.60477 0.026935 0.025553 -0.27512 -0.025209 -0.13238 -0.05251 0.093185 0.14771 0.67307 -0.23618 -0.038714 -0.52788 -0.52716 -0.53997 -0.43301 -0.20765 0.045424 -0.40364 -0.41342 -0.0083005 -0.45394 -0.19829 -0.33526 0.2233 -0.23618 -0.0099611 -0.89971 -0.045499 -0.41586 -0.11103 2.3145 -0.29922 -1.0148 0.0042057 -0.0049844 0.11316 -0.35442 0.019363 -0.20411 0.44071 -0.57548 0.40644 -0.27194 -0.42375 -0.0022168 -0.46035 -0.1177 -0.44663 -0.46206 0.0066653 0.3342 -0.1774 0.003191 -0.058505 0.31964 -0.054825 -0.71323 -0.14 0.8691 0.40677 0.28676 -1.1607 -0.065994 -0.37977 0.19558 0.076422 0.038691 -0.30874 0.023796 0.39346 0.073833 0.36133 0.21315 -0.43637 -0.015329 0.42477 0.043192 -0.45961 -0.36658 -0.28679 0.0058595 0.097979 -0.33549 -0.010094 -0.272 -0.060211 -0.47892 -0.21206 1.9636 0.0081672 -0.027124 -0.00087491 -0.33883 0.34226 -0.090925 0.012516 -0.39708 -0.025896 -0.096704 0.013314 0.023566 0.2523 Deletion Peak 34 - CN values 14q23.3 chr14:66963153-67658112(probes 1205922:1206138) chr14:66970921-67652098(probes 1205924:1206134) chr14:67363203-67379014(probes 1206030:1206031) 0.1651 0.16727 Actual Copy Change Given -0.0087146 -0.48921 0.0055529 -0.0059522 -0.16637 0.097333 -0.067458 -0.49361 -0.15278 -0.49757 0.36002 0.0063871 0.0047148 0.076998 -0.44954 0.37002 0.20522 0.040212 0.05637 0.10994 0.030732 0.00069327 0.033267 -0.057924 0.018943 -0.57021 -0.77023 0.5088 -0.037455 -0.43018 -0.22047 0.61262 -0.30944 -0.016429 -0.42496 0.020343 0.62479 0.72301 -0.70271 -0.025893 -0.0069195 0.39546 -0.073343 -0.22982 0.6559 0.085172 0.18874 0.38987 -0.16319 -0.13975 0.58686 -0.47976 -0.19662 -0.10395 -0.32124 -0.08413 0.012677 0.029027 -0.087987 -0.025893 0.078727 0.03863 -0.016979 -0.233 0.050324 0.040566 -0.12135 -0.27152 0.10439 -0.20516 -0.02474 -0.0058966 0.00076126 -0.32368 0.045424 -0.71131 -0.080141 -0.15336 -0.198 0.13288 -0.04428 0.014749 -0.53042 0.039783 0.021906 0.00041593 -0.085855 0.36248 -0.0025892 0.19299 -0.088109 0 -0.0038779 -0.023292 -0.51342 -0.14772 0.1679 -0.22305 0.019083 0.016565 0.80887 0 -0.063569 0.14395 0.40244 0.74975 -0.1572 0.29198 0.0090048 -0.40473 0.098997 -0.0008316 1.1503 0.33561 -0.012886 0.0024005 0.66087 -0.038143 0.18068 0.00041593 0.85522 0.50273 -0.60953 0.023376 0.067597 -0.33687 0.7637 0.29899 -0.067592 -0.015604 0.32834 0.21606 0 0.27926 -0.64528 0.037236 -0.019314 0.53134 -0.17063 -0.24034 -0.0016629 -0.060345 -0.075868 -0.56435 0.24778 -0.33802 -0.12408 0.69372 0.062794 0.043299 -0.34301 0.34567 0.36789 0.010285 0 0.073266 -0.0045695 0.0114 0.15831 -0.47417 -0.036129 -0.28632 -0.60651 -0.021647 -0.73231 0.23783 0.089706 0.70064 0.4863 -0.22478 0.37134 -0.43138 0.38188 0.1156 1.0186 -0.024935 0.20974 0.013887 0.055373 0.353 -0.099736 0.17916 -0.25938 -0.30921 Deletion Peak 35 - CN values 15q11.2 chr15:1-31198928(probes 1229483:1232171) chr15:25576904-25691367(probes 1230355:1230399) chr15:1-26989200(probes 1229483:1231366) 0.035837 0.035706 Actual Copy Change Given 0.49476 0.056228 0.058224 0.49251 -0.49819 -0.45747 0.03728 0.42114 -0.12069 -0.066922 -0.21771 -0.15682 0.0081917 0.048266 -0.34136 -0.014916 0.0036076 0.029914 -0.17992 -0.022744 -1.062 -0.00097017 0.23752 -0.035721 0.020343 0 -0.13639 -0.021647 -0.0010617 0.44935 -0.20535 -0.00094122 0.14256 -0.024114 0.24326 -0.02603 -0.03095 0.010424 0.032563 -0.38291 -0.037898 -0.49329 -0.11848 -0.22231 0.0048579 0.00041593 0.2058 -0.055857 -0.11064 -0.44997 -0.024935 -0.1866 -0.1803 -0.055798 -0.31657 -0.47067 0.020365 0 -0.3809 0.65112 -0.022332 -0.047936 -0.059419 0.35839 0.050392 -0.23326 -0.20436 0.15591 0.077862 0.11383 0.0068662 0.47017 -0.0020105 0.14158 0.024689 0.056085 -0.10039 -0.16942 -0.66864 -0.091943 -0.12772 0.01433 0.47169 0 -0.027261 -0.0020784 -0.1088 0.46639 -0.1467 -0.20237 -0.4505 -0.23789 -0.0080244 1.1296 0.33496 0 0.42126 -0.70172 -0.0045695 0.010285 0.00027728 0.097397 -0.14129 -0.075254 -0.017116 -0.068261 0.35169 -0.0031906 0.016818 -0.37831 0.0416 -0.098023 0.58722 -0.31447 0.32583 -0.73632 -0.014641 -0.248 0.3501 -0.05433 -0.31096 -0.57625 0.020164 0.35006 0.65888 -0.68077 -0.0066432 0.10964 -0.14374 -0.032996 -0.5432 0.18374 -0.10167 -0.32077 0.63627 -0.71114 0.25371 0.46961 -0.2038 -0.1382 -0.87416 0.18783 -0.24276 0.40744 -0.074418 -0.381 -0.01354 0.043865 0.026346 -0.041974 -0.40189 -0.36544 -0.55166 0.026935 -0.37752 -0.3828 -0.0011087 0 -0.067726 -0.42349 0.089706 0.26294 0.059503 0.1177 0.25746 0.04812 -0.12278 -0.0033243 -0.49507 0.0040243 0.4163 0.024829 -0.024251 0.32325 2.0242 -0.61249 0.54202 0.7057 -0.45697 -0.20921 -0.13303 -0.0074801 0.24762 0.11829 Deletion Peak 36 - CN values 16p13.3 chr16:1-1758773(probes 1273701:1273934) chr16:1-798657(probes 1273701:1273727) chr16:1-1836254(probes 1273701:1273953) 0.012791 0.013118 Actual Copy Change Given -0.038034 0.034254 0.026092 -0.85011 -0.13716 -0.44996 -0.1609 -1.0616 0.080456 -0.52502 -0.16904 -0.43496 0.0074958 0.036512 -0.053476 0.36313 -0.0013858 0.022611 -0.19575 0.057832 0.016146 -0.0071958 0.2609 0.043865 0.54013 -0.0501 -0.02151 -0.028901 -0.0053523 -0.035642 0.2548 0.0023581 -0.013955 -0.010094 0 -0.0042232 -0.010784 -0.016208 -0.70109 -0.37954 -0.064106 -0.50577 -0.017941 -0.30862 0.0095883 0.00097064 -0.21354 0.031485 0.14058 -0.21268 -0.028218 -0.62274 -0.22834 -0.032575 -0.34091 -0.62922 0.028504 -0.043346 -0.020972 -0.033814 0.12697 0.015168 -0.69242 -0.49371 -0.39586 0.08934 0.20519 -0.039243 -0.039801 0.12764 -0.060691 0.10226 -0.0080947 -0.56892 -0.75702 -0.68761 -0.35202 0.66956 0.44884 -0.017523 -0.32704 -0.63301 -0.037339 0.031458 0.033972 -0.007472 -0.62064 0.15621 0.024969 0.15472 -0.18043 0.0020805 -0.13755 -0.69649 -0.054286 -0.58471 0.29533 -0.26324 -0.069332 -0.45576 0.19451 -0.014778 0.11228 0.52655 -0.079477 -0.74377 0.3235 -0.0413 0 0.46297 0.26923 0.21729 -0.026988 -0.34458 0.29524 -0.037584 0.71584 -0.3423 0.31924 -0.74942 0.25623 -0.03681 -0.012751 -0.51846 -0.035374 -0.42615 -0.020549 -0.31518 -0.0030475 0.388 0.41346 0 0.1588 -0.36556 -0.038306 -0.73091 0 -0.71764 0.047521 -0.19149 0.019363 0.018586 -0.47638 -0.30604 -0.13031 -0.34492 -0.34079 -0.4826 -0.56833 -0.29335 -0.17327 -0.0060904 0.164 -0.59195 -0.15938 -0.38145 0.71247 -0.40097 0.023005 0.11609 -0.38078 -0.28917 -0.11247 0.037782 -0.0087146 0.26797 0.13643 -0.013127 -0.061555 -0.25213 -0.038442 0.020763 -0.053341 -0.034946 -0.38213 -0.017666 0.17072 -0.04048 0.41747 0.19238 -0.14644 -0.036983 0.30953 0.32536 Deletion Peak 37 - CN values 16q23.1 chr16:78098006-79031486(probes 1306668:1307415) chr16:78129058-79247026(probes 1306699:1307701) chr16:78407454-79144157(probes 1306942:1307561) 5.3932e-79 5.3932e-79 Actual Copy Change Given -0.073877 -1.0519 0.031155 -0.027945 -0.96395 -0.4806 -0.52225 -0.49183 -0.27428 -1.2929 -0.00097017 0.064797 0 0.036512 -0.5162 0.36313 -0.0013858 0.029211 -0.19737 0.094491 -1.2929 -0.0071958 -0.10513 0.043865 0.54912 -0.064636 -0.012989 -0.028901 -0.0053523 0.45122 -0.36272 0.0023581 -0.10985 0.020483 -1.0716 -0.005261 0.73549 0.0036076 -0.72897 -0.41498 -0.064106 -1.2929 -0.36113 -0.26492 0.011818 -0.072408 -0.63699 -0.016058 0.14058 -0.21268 0.41831 -0.48628 -0.50409 -1.1674 0.29835 0.12697 -0.039644 -1.2929 -0.0038886 -0.17866 0.13954 -0.035721 -0.026988 -1.2929 -0.3267 -0.62632 -0.47765 -0.9192 -0.83873 0.12764 -0.060691 -1.2929 -0.0080947 -0.62007 0.038444 -0.69559 -0.43474 -1.1638 -1.2929 -0.66642 0.10497 -0.065447 -0.52061 -0.01518 -0.32263 -0.64987 -0.7559 0.15621 -1.2929 -0.7019 -0.49036 -0.20548 0.28897 -0.62312 -0.48039 -1.2929 0 -0.22071 -0.0085766 0.0011093 -0.34927 -0.014778 0.26828 0.5825 -0.065581 -0.8586 -0.32077 -0.014095 0 -0.3694 -0.044009 0.1971 -0.06424 -0.00013862 0.28794 -0.037584 0.42486 -0.2912 -0.41773 -0.041024 0.42654 0.013074 -0.62677 -0.4733 -0.0067057 -0.47258 -0.11077 -0.066922 -0.0030475 0.44715 0.43851 0 -0.76233 -0.04048 -0.092478 0.081755 0 -1.2929 -1.0354 -0.65062 -0.95435 0.19022 0.45804 -1.2929 -0.36518 -1.1071 -0.25781 -1.2929 -1.2929 -0.27152 -0.89858 0.017264 0.164 -1.2697 0.31241 -1.2929 0.71247 -1.0227 0.023005 -0.3253 -0.34469 -0.91183 0.39214 0.037782 0.32173 0.72112 0.13643 -0.013127 -0.044329 -0.070135 -0.068797 0.020763 0.38998 -0.012481 0.3395 -0.00041585 -0.17832 0.01419 0.41747 -0.16765 0.34356 0.03337 -0.26867 -0.32716 Deletion Peak 38 - CN values 17p12 chr17:11060240-25626166(probes 1319384:1323850) chr17:11921739-12048275(probes 1320055:1320120) chr17:11989714-11997691(probes 1320088:1320089) 0.074408 0.07459 Actual Copy Change Given -0.52655 -0.0037395 -0.052396 -0.031223 -0.37572 -0.50681 -0.75037 -0.45061 0 -0.5348 -0.36283 0.211 0.014884 -0.0069195 0.43243 0.043865 -0.058596 -0.028875 0.02806 -0.48659 -0.5011 -0.0029091 0.23504 0.1202 -0.5201 -0.19825 -0.037082 -0.049695 0.012703 -0.013815 -0.36963 -0.040345 -0.48166 -0.033405 -0.14708 0.0073609 -0.017116 -0.0073339 -0.72261 -0.38154 -0.015879 0.43631 -0.27236 -0.30169 0.021884 0.018452 0 -0.43677 0.18011 -0.45061 0.44664 0.016006 -0.5163 -0.41707 -0.33629 -0.50173 0.043321 -0.040089 -0.036684 -0.054016 -0.33416 -0.66864 -0.074411 -0.083598 -0.0012473 -0.59891 -0.63206 -0.13781 -0.77073 0.040091 0.05344 -0.58123 0.0011773 -0.60632 0.30202 -0.71033 0.017963 -0.59528 0.085097 -0.1703 0.022444 -0.61623 -0.57546 -0.080121 -0.23936 -0.0040162 -0.15771 -0.075478 -0.45971 -0.5037 -0.3782 -0.24484 -0.005814 -0.094196 -0.093006 -0.071472 -0.43292 -0.2744 -0.77643 -0.0051227 0.35406 -0.0095426 0.9897 -0.10963 -0.11129 0.42503 -0.24922 0.065079 -0.063192 -0.37065 -0.082668 -0.013259 0.48621 -0.024524 -0.031435 -0.074503 0.013632 0.040468 0.047836 0.64726 -0.3341 -0.031586 -0.64661 0.2058 -0.032785 -0.011887 -0.14438 -0.47923 0.0087528 0.35643 -0.051451 0.0467 -0.12599 0.27584 -0.7123 -0.72526 -0.38973 0.45751 -0.35926 -0.20299 0.016985 -0.13199 -0.31096 -0.058866 -0.053071 -0.25842 -0.27798 0 -0.59594 -1.2775 -0.41667 -0.37144 -0.53784 0.052525 0.24498 -0.39213 0.65829 -0.52747 -0.66374 -0.024935 -0.39842 -0.11051 -0.62064 -0.106 -0.30757 -0.47881 0.016705 0.6602 -0.52767 -0.011749 -0.53459 -0.0037395 -0.41146 -0.068501 0.28343 -0.55867 -0.18449 -0.017717 -0.44964 -0.063706 0.30825 0.065044 -0.24764 -0.31879 Deletion Peak 39 - CN values 17q25.3 chr17:80604514-80902410(probes 1350731:1350882) chr17:80786416-80809451(probes 1350818:1350826) chr17:79857921-81195210(probes 1350529:1350898) 0.0022668 0.0022402 Actual Copy Change Given -0.030813 -0.068127 -0.020138 0.62642 0.51839 0.091155 0.067661 -0.46834 -0.069466 0.034536 -0.0033243 -0.15592 0.56685 0.047978 0.43243 0.043865 -0.058596 0 0.02806 -0.50132 -0.016292 -0.0029091 0.24544 0.10482 -1.1612 -0.19825 0.41312 -0.014916 0.012703 -0.029355 -0.36125 -0.040345 0.5697 0.63956 -0.019726 0.027638 1.0386 0.0024969 0.020483 -0.35499 -0.012162 0.41848 0.20473 0.438 0.021884 0.048688 0 0.46184 0.2509 0.63408 -0.035721 0.00013863 0.10351 0.060936 -0.31634 -0.52143 0.043321 -0.87908 -0.018638 0.55195 0.13858 0.067518 1.0506 -0.23423 0.016146 0.10008 -0.37493 0.29437 -0.062361 0.067313 0.039256 -0.002438 0.0011773 -0.12498 -0.19087 -0.71301 0.017963 -0.32391 0.088403 -0.14553 -0.010094 -0.051451 0.14399 0.012677 -0.057116 -0.0040162 0.73796 -0.075478 -0.45361 0.40844 0.43075 0.035947 -0.013849 -0.064508 0.31851 -0.071472 -0.020275 -0.082004 -0.17677 -0.0051227 -0.023808 -0.0018014 0.25841 -0.12866 -0.067592 0.29517 -0.020275 0.065079 -0.98802 0.13702 0.33221 0.1182 0.5245 -0.044551 -0.4587 -0.084089 0.83125 -0.70352 -0.010364 -0.048883 -0.31774 -0.11064 -0.40609 -0.5139 -0.39802 -0.41531 0.015587 0.13302 0.0087528 0.35537 -0.96121 0.032422 -0.12638 0.4996 -0.016979 -0.69296 -0.37403 0.96432 0.60313 0.37068 0.016985 0.017824 0.2617 0.010489 -0.093535 -0.35613 -0.34194 0.063939 0.016705 0.22993 -0.018403 0.0022193 -0.046041 0.089851 0.24498 -0.39341 -0.75495 0.42284 -0.55397 -0.0091286 -0.038667 -0.030267 0.53696 0.13569 0.34567 0.053948 -0.27487 0.72168 0.42991 -0.22502 0.37216 -0.0037395 -0.093799 -0.044458 0.28343 -0.58861 0.18688 -0.016704 0.2006 -0.032725 0.43614 0.089087 0.073977 0.2931 Deletion Peak 40 - CN values 18p11.23 chr18:2802589-12313664(probes 1351748:1357953) chr18:7226861-7303200(probes 1354395:1354438) chr18:7034933-7556207(probes 1354257:1354634) 0.10154 0.10368 Actual Copy Change Given -0.26625 0.033127 -0.90518 -0.0030475 0.15621 -0.32391 2.513 -0.48827 -0.94415 0.41078 0.48871 -0.067993 -0.00028143 -0.13251 0.024268 -0.22564 0.0087528 -0.39517 -0.089553 0.084643 0.047694 -0.0024938 1.5965 -0.02031 -0.25419 -0.51187 0.79097 0.003191 -0.0038309 -0.014641 -0.6236 0.58686 0.023003 -0.78387 0.44155 0.0034687 1.8721 0.0015255 0.032563 0.39131 -0.010508 -0.54643 -0.1609 -0.54885 -0.36601 -0.071205 0.20559 -0.48088 -0.21156 -0.44085 0.39031 0.37397 -0.51012 -0.53713 -0.33399 -0.10613 -0.018056 -0.052412 0.36279 1.2653 -0.02774 -0.70845 0.58399 0.039902 0.0022193 0.7705 0.041175 0.2664 -0.041852 -0.16439 -0.019255 0.40734 0.0082641 0.12255 -0.049965 -0.69776 -0.023703 -0.57575 -0.20573 -0.11351 -0.15962 0.0033299 -0.52471 -0.42515 -0.27356 -0.019589 0.40544 0.2939 -0.98386 0.22808 0.30378 0.26514 -0.33687 0.51612 -0.08612 0.33739 -0.27069 -0.7211 0.036794 -0.44964 0.43834 0.38056 -0.049559 1.1759 0.68328 0.41379 0.40661 0.1673 -0.93387 -0.39597 -0.033787 0.3033 0.57348 0.0076392 0.014394 0.011582 -0.018042 0.79513 0.41999 0.7313 0.30633 0.5062 0.04496 -0.0023553 0.031795 -0.35122 0.10994 0.0023581 0.017684 -0.49016 -0.00041585 -0.022744 -0.57523 0.21345 0.060965 -0.69776 -0.13057 -0.015036 -0.5489 0.19193 0.00013863 0.35545 -0.8597 -0.43485 0.51281 -0.70971 -0.036538 0.0069433 -0.57733 0.46109 -0.81321 -0.39263 0.25965 0.066945 0.33901 0.78215 0.010564 -0.7582 0.053379 -0.04577 -0.28964 -0.58451 0.061937 -0.01904 -0.0095426 -0.16485 0.31322 0.003191 0.43165 0.44308 -0.040345 0.023426 0.37312 0.65787 -0.01037 -0.48418 0.22418 -0.69911 0.45442 -0.14503 0.37282 0.38051 0.27584 -0.15809 Deletion Peak 41 - CN values 18q12.2 chr18:36593175-39537209(probes 1369961:1371660) chr18:36783539-37388942(probes 1370051:1370305) chr18:36811401-37425662(probes 1370065:1370322) 3.8012e-06 0.0086708 Actual Copy Change Given -0.45758 -0.92227 0.43277 -0.77158 0.15621 0.22129 0.18707 -0.48827 -0.25394 -0.57506 -0.55086 -0.49871 -0.00028143 0.65332 0.024268 -0.22564 0.0087528 -0.39731 -0.089553 0.09856 -0.46727 -0.0024938 -0.36363 -0.010508 -0.25419 -0.53622 0.79097 -0.68287 -0.0038309 0.015168 -0.7188 -0.6332 0 0.65719 0.44155 -0.36329 -0.37934 0.0049969 -0.7055 -0.41674 -0.010508 -0.54643 -0.29792 -0.48974 -0.33837 -0.071205 -0.18597 0.39336 -0.21156 -1.2929 -0.052801 -0.47934 -0.50525 -0.42309 -0.66309 -0.19162 -0.018056 -0.052412 0.024537 0.60937 -0.31433 -0.7019 -0.0053992 -0.6783 0.0022193 -0.60569 -0.58402 -0.18043 -0.59813 -0.16439 -0.060153 -0.57166 0.0082641 0.12255 -0.049965 -0.68979 -0.19736 -0.55567 -0.64095 -0.11351 -0.15962 -0.60177 -1.1323 -0.15948 -0.41542 -0.019589 0.4196 -0.20486 -0.45254 -0.37324 -0.81236 -0.24253 -0.28489 -0.0026322 -0.52102 -0.56883 -0.093931 -0.12694 -0.70064 -0.44555 -0.41344 -0.37121 -0.48407 -0.046762 -0.81811 -0.033765 -0.24995 0.1673 0.07942 -0.40094 -0.033787 0.3033 -0.010922 -0.31541 -0.35265 0.011582 -0.032041 -0.59205 -0.41531 -0.69667 1.2905 0.40294 0.04496 -0.0023553 -0.29376 0.26765 -0.36986 0.0023581 -0.65043 -0.47205 -0.020138 -0.1046 -0.56532 0.21345 -0.6277 -0.69776 -0.31541 -1.0501 -0.51398 0.19193 0.030451 -0.011887 0.26971 -0.40749 -0.3773 0.65627 -0.042652 -0.44221 -1.2179 -0.25527 -0.75048 -0.36068 0.23659 -0.56306 -0.17651 0.58722 -0.014228 -0.75513 -0.079998 -0.04577 -0.28964 -0.5601 -0.60738 -0.01904 -0.4097 -0.16485 -0.050776 0.034677 -0.11456 0.45003 -0.52338 -0.52143 -0.02562 -0.6919 -0.34171 -0.51792 -0.15864 -0.70028 1.3506 -0.14503 0.21269 -0.033033 -0.36102 -0.15809 Deletion Peak 42 - CN values 18q21.2 chr18:48472083-48650073(probes 1377305:1377469) chr18:48491525-48616860(probes 1377308:1377463) chr18:41667345-78077248(probes 1372725:1393301) 1.479e-16 7.1792e-12 Actual Copy Change Given -0.45758 -0.92227 -0.50484 -0.77158 -0.88248 0.22129 -0.93637 -0.48827 -0.25394 0.39911 -0.55977 -0.50204 -0.00028143 0.65332 0.024268 -0.22564 0.0087528 -0.39731 -0.089553 -0.51177 -0.46727 -0.0024938 -0.36363 -0.010508 -0.25419 -0.53622 0.83255 -0.7042 -0.0038309 -0.036674 -0.72245 -1.1352 0 0.65719 0.44155 -0.36329 -0.37934 0.0049969 -0.7055 -0.41674 -0.010508 -0.54643 -0.29792 -0.48974 -0.33837 -0.071205 -0.19544 0.39336 -0.21156 -0.43333 -0.052801 -0.47934 -0.50525 -0.42309 -0.66309 -0.19162 -0.018056 -0.37461 0.011529 -0.019452 -0.27392 -0.7019 0.56934 -0.72261 0.0022193 -1.0162 -0.59468 0.24311 -0.6139 -0.16439 -0.060153 -0.57136 0.0082641 0.12255 -0.049965 -1.2089 -0.19736 -0.55567 -0.64095 -0.11351 -0.15962 -0.59964 -1.1323 -0.15948 -0.48628 -0.019589 0.4196 -0.20486 -0.45254 -0.86806 -0.81236 -0.24253 -0.28489 -0.0026322 -0.52102 -0.57457 -0.093931 -0.17449 -0.71404 -0.44555 -0.41344 -0.37121 -0.48407 -0.057697 -0.0029091 -0.051299 -0.17462 0.1673 -0.85648 -0.40094 -0.033787 0.3033 -0.014228 -0.31541 -0.35265 0.011582 0.06537 -0.59205 -0.41531 -0.69667 -0.91176 -0.52594 0.11063 -0.0023553 -0.29376 0.21438 0.031999 0.0023581 -0.93585 -0.47849 -0.020138 -0.1046 -0.55063 -0.43061 -1.1004 -0.69776 -0.31541 -0.56694 -0.52282 0.19193 -0.012851 -0.011887 -0.82031 -0.40595 -0.35761 -0.70289 -0.024798 -0.44221 -1.2179 -0.30733 -0.74258 -0.36408 0.23659 -1.1698 0.18102 -0.87393 0.0013868 -0.75513 -0.079998 -0.10554 -0.28964 -0.5601 -0.60738 -0.01904 -0.40672 -0.16485 -0.050776 0.034677 -0.00055444 0.46297 -0.52338 -0.52143 0.37512 -0.6919 -0.34171 -0.51792 -0.15864 -0.70028 -0.8296 -0.14503 0.21269 -0.033033 -0.36102 -0.15809 Deletion Peak 43 - CN values 18q22.3 chr18:56469085-78077248(probes 1382296:1393301) chr18:71410441-71412692(probes 1389676:1389677) chr18:41667345-78077248(probes 1372725:1393301) 1.0131e-05 0.045006 Actual Copy Change Given -1.0044 -0.48015 -0.51115 0.031014 -0.61997 0.13771 1.4747 -0.48827 -0.25394 0.41915 -0.2991 -0.21354 -0.00028143 -0.53774 0.030169 -0.22564 0.0087528 -0.39731 0.024689 -0.51177 0.015447 -0.0024938 -0.36363 -0.010508 -0.25419 -0.53622 -0.029995 -0.68597 -0.0038309 -0.092345 -0.72245 -0.64619 0 -0.11312 0.44155 -0.36329 -0.37934 0.0049969 -0.65258 -0.41674 -0.010508 -0.54643 -0.29792 -0.28582 -0.33837 -0.071205 -0.18295 -0.042063 -0.21156 -0.43962 -0.052801 -0.47934 -0.50525 -0.42309 -0.67637 -0.18597 -0.018056 -0.37461 0.011529 -0.019452 -0.27392 -0.019177 -0.024114 -0.73801 0.0022193 -0.6136 -0.59468 0.24311 -0.59935 -0.16439 -0.060153 -0.52549 0.0082641 0.12255 -0.049965 -1.2089 -0.17226 -0.55567 -0.6479 -0.10315 -0.15962 0.010006 -0.53449 -0.15948 -0.46503 -0.019589 0.40861 -0.20486 -0.96028 -0.20411 -0.81236 -0.24253 -0.28489 0.008892 -0.52102 -0.55487 -0.093931 0.54312 -0.71404 -0.44555 -0.41344 -0.37121 -0.48407 -0.057697 -0.0029091 -0.088092 -0.17462 0.1673 -0.85648 -0.40094 -0.031496 0.3033 -0.014228 -0.021784 -0.41166 0.011582 0.06537 -0.59205 -0.41531 -0.69667 -0.91176 0.0093098 0.11063 -0.0023553 -0.29147 0.28517 -0.00013683 0.0023581 -0.65529 -0.48951 -0.041567 -0.1046 -0.56034 -0.43061 -0.63121 -0.71511 -0.7686 -0.56694 -0.52282 0.19193 -0.012851 0.11932 -0.24824 -0.4786 -0.06719 -0.70289 -0.038714 0.10016 -1.2179 -0.30004 -0.74258 -0.36408 0.23659 -0.56555 0.89728 1.5635 0.0013868 -0.78698 -0.079998 -0.1517 -0.28964 -0.55226 -0.60738 -0.061555 -0.40672 -0.27331 -0.050776 -0.4911 0.057511 -0.61924 -0.52338 -0.52143 0.35447 -0.6919 -0.34171 -0.51792 -0.62334 -0.70028 -0.84482 -0.14503 -0.13458 -0.033033 0.24047 -0.15809 Deletion Peak 44 - CN values 19p13.3 chr19:1-2241326(probes 1393302:1393677) chr19:1107036-1186532(probes 1393449:1393462) chr19:1-9515212(probes 1393302:1396266) 8.6035e-06 8.2657e-06 Actual Copy Change Given -0.52542 -0.39964 -0.34159 -0.21639 -0.20809 0.022164 -0.25817 -0.49047 -0.12888 -0.46238 -0.069867 -0.063954 0.017679 0.0082034 0.30569 0.073115 -0.016979 -0.36349 0.062794 -0.49078 -0.49809 -0.0077482 -0.13678 -0.37358 -0.51805 -0.81114 -0.060378 -0.086386 0.0042104 -0.52113 -0.39263 -0.075345 -0.35795 0.34974 -0.068395 -0.10959 0.021183 0.0011093 -0.67085 -0.42407 -0.0022168 -0.5164 0.094927 -0.3503 0.042732 -0.0096806 0.13613 -0.25221 0.026514 -0.079077 0.43344 -0.53997 -0.22256 -0.22773 -0.0094046 -0.4534 0.077309 -0.085074 -0.1494 -0.06786 -0.33422 -0.62312 0.41279 0.15188 -0.37245 0.087072 -0.0053992 -0.025346 -0.15311 0.020142 0.0058904 -0.4756 -0.018972 -0.60584 0.0282 -0.73328 0.014609 -0.03095 -0.29615 -0.18357 -0.12914 -0.059 -0.57684 -0.41712 -0.060614 0.023566 -0.28857 -0.022411 -0.44706 -0.53926 0.13495 0.019923 -0.22675 -0.17335 -0.45971 -0.11103 0.24342 -0.32217 -0.16026 -0.094196 -0.06786 -0.048207 -0.12875 -0.13152 -0.15669 0.71396 -0.26625 -0.018083 -0.10542 0.044867 -0.15656 -0.13303 -0.032723 -0.064374 -0.14098 -0.09508 0.041034 -0.14588 0.049114 -0.81827 -0.9153 0.33772 -0.65829 0.18162 -0.39647 0.065513 -0.12304 -0.085855 -0.16739 -0.64227 -0.54623 -0.055769 0.11173 -0.1088 -0.087712 -0.01106 0.0023581 -0.26649 -0.0071273 -0.22502 0.018103 -0.20269 -0.17852 -0.10053 0.9839 -0.024114 -1.2929 -0.4898 -1.1805 -0.41058 -0.041751 -0.014366 0.15935 0.049114 -0.56912 -0.38504 0.6257 -0.54885 -0.026167 -0.34038 -0.14194 -0.051046 -0.11299 -0.0020784 -0.035721 -0.19011 0.1437 0.00027728 0.4485 -0.50836 -0.52471 -0.028491 -0.042788 -0.11495 -0.42549 0.14176 -0.24098 -0.081871 -0.39152 0.078436 -0.45147 -0.092117 -0.22761 -0.27894 Deletion Peak 45 - CN values 20p12.1 chr20:14301156-16252980(probes 1425732:1426896) chr20:13965126-16036135(probes 1425567:1426681) chr20:15467744-15471214(probes 1426125:1426126) 7.3239e-07 6.9949e-07 Actual Copy Change Given 0.46964 0.31097 -0.36 -0.0094046 0.12653 2.0111 0.78562 0.23082 0.13924 0.47255 0.15278 0.29278 0.0040201 1.2237 0.45734 0.30266 0.003191 0.37927 0.34909 -0.0059522 -1.2929 -0.0094046 0.29024 0.77541 0.010146 0.62133 -0.024662 -0.027945 0.031906 0.3408 0.25949 0.53415 0.96308 -0.77744 0.019223 -0.37098 0.2708 0.0013868 -0.72119 -0.36861 0.13391 1.0562 0.18904 0.8014 0.010703 -0.0036011 0.19269 0.40516 0.24218 0.099482 0.8161 -0.48102 0.13288 -0.23276 0.65811 -0.47723 0.012398 0.013197 0.10773 1.167 -0.32728 0.68701 1.1227 -0.026851 0.35064 0.78745 0.27979 -0.039394 0.28169 0.53319 0.071883 0.47983 -0.011681 0.79258 0.27143 0.075128 0.090697 -0.56813 -0.82952 0.56561 0.7336 0.079447 -0.175 0.047148 -0.28928 -0.0095426 0.8163 -0.072808 -0.4782 -0.18949 0.20076 -0.23973 0.42217 0.48906 0.15681 -0.27033 0.013074 -0.16701 -0.72729 0.0033299 -0.40749 0.28074 0.17664 0.41692 -0.03395 -0.0099565 0.0019418 0.55478 -0.93439 0.37545 -0.018326 0.79762 -0.029721 0.06308 0.30711 0 0.5493 0.0183 -0.03053 -0.041702 1.4747 0.52188 -0.0019776 -0.49434 0.35553 -0.44135 0.41262 0.41898 0 0.83451 0.6792 0.062937 0.28415 0.034113 -0.027261 0.057796 0.040185 0.46502 0.19794 -0.14 0.90372 0.69055 -0.22538 1.2789 -0.70899 0.90432 0.31274 0.53889 0.041883 -0.28774 -0.036178 0.37364 -0.36102 0.40361 0.28137 0.19406 -0.027398 0.45786 0.55301 0.046417 0.50307 -0.29272 0.052668 0.15829 0.014888 0.73129 0.19299 0.62479 0.27064 -0.25152 0.38323 0.054376 0.36201 0.34838 0.48372 0.092315 0.24245 0.0068044 -0.43474 0.044146 0.96946 0.7004 0.27854 -0.35707 Deletion Peak 46 - CN values 21q21.1 chr21:1-26760449(probes 1454008:1460937) chr21:22367376-22918619(probes 1458429:1458802) chr21:1-25531657(probes 1454008:1460065) 0.00084599 0.0033475 Actual Copy Change Given -0.94824 0.03031 0.051245 -0.0053992 -0.31867 -0.74098 -0.41652 0.42788 0.07254 -0.0013858 -0.6897 0.24525 0.0049927 -0.70792 0.065226 -0.10381 -0.2005 0.68704 -0.17689 -0.4787 -1.0203 0.0044411 -0.36624 -0.0069195 -0.51259 0.2442 0.023846 -0.66947 0.031343 -0.034768 0.20595 -0.6194 -0.11705 -0.059807 0.11008 -0.38873 -0.044957 0.0033299 -0.063703 0.035242 -0.06786 -0.54118 -0.26167 -0.62865 -0.32797 0.075271 -0.19575 -0.47318 -0.32925 -0.87541 -0.48187 -0.46259 -0.50194 -0.45811 -0.31809 -0.46557 -0.023823 0.16293 -0.66356 -0.023018 0.032281 -0.68979 -0.019452 -0.6867 -0.39029 -0.61724 -0.20796 -0.32124 -0.29638 -0.14019 -0.018157 -0.56302 0.0046481 -0.12772 -0.7788 -0.70019 -0.17056 0.21284 -0.54905 -0.061012 -0.20099 -0.0062286 -0.42254 -0.18896 -0.28974 0.0087528 -0.55025 -0.049965 -0.44059 -0.47596 -0.13406 0.034677 -0.28905 -0.55015 -0.49989 -0.55837 -0.43409 0.29867 0.035383 -0.44911 -0.4055 0.0023581 -0.49068 -0.76469 0.17392 0.77099 -0.32228 0.0040196 0.063625 0.24544 0 -0.17866 -0.016292 0.00597 -0.36788 -0.00023486 -0.032021 -0.18345 -0.39274 -0.67323 -0.27914 -0.067993 0.009829 -0.48271 -0.6777 -0.33871 -0.43821 0.075997 -0.27452 0.45888 -0.014778 0.0043021 -0.57286 -0.34251 -0.62598 0.020182 -0.48386 -0.11535 0.30322 -0.16891 -0.011198 -0.14207 -0.25587 -0.37144 0.23845 -0.3311 -0.013953 -0.97566 -0.53317 -0.26733 -0.042837 0.58578 -0.089434 -0.0069195 -0.21949 -0.88635 0.004719 -0.35442 -0.21849 -0.84875 0.14697 -0.29933 -0.63415 -0.15157 -0.043602 -0.17044 -0.16001 -0.01037 -0.47533 -0.22588 -0.61087 0.0020805 0.34681 -0.68189 -0.0042929 0.1616 0.17554 -0.73792 -0.44221 -0.019179 -0.29367 0.056473 -0.14065 -0.31284 Deletion Peak 47 - CN values 21q22.12 chr21:36102470-37096497(probes 1467039:1467834) chr21:36156550-37358828(probes 1467074:1468014) chr21:36749233-36753667(probes 1467545:1467546) 0.00011709 0.00084863 Actual Copy Change Given -0.48701 0.03031 0.015587 -0.0053992 -0.32588 -0.29118 -0.41652 -0.49694 0.059794 0.0072217 -0.40401 -0.083997 0.0049927 -0.70792 0.015447 -0.10381 -0.2005 0.78334 -0.17689 -0.4787 -1.051 -0.0075371 -0.36624 -0.0069195 -0.53419 0.2442 0.023846 -0.66947 0.031343 -0.034768 0.20595 -0.024524 -1.046 -0.14618 0.012516 -0.37347 -0.044957 0.0054139 1.0848 0.035242 -0.06786 -0.54321 -0.26167 0.69391 -0.32797 0.07988 -0.19575 -0.47318 -0.32925 -0.029994 -0.48187 -0.48355 -0.50194 0.10176 -0.31809 -0.46557 -0.023823 -0.19639 -0.68126 -0.023018 0.032281 -0.68979 -0.06813 -0.6867 -0.39029 -0.61724 -0.20796 -0.32124 -0.35533 -0.14019 -0.018157 -0.55943 0.0046481 -0.12772 -0.7788 -0.70019 -0.17056 0.16625 -0.54905 -0.50618 -0.28608 -0.0062286 -1.064 -0.18896 -0.20224 0.0087528 0.3832 -0.049965 -0.45029 -0.50877 -0.13406 0.034677 -0.28905 -0.62979 -0.49989 -0.55837 -0.43409 0.24575 0.035383 -0.44911 -0.4055 0.0023581 0.35414 -0.11878 0.17392 0.77099 0.1006 -0.29201 0.020456 0.28548 0 -0.17866 -0.016292 -0.00055444 -0.36788 -0.00023486 0.017544 -0.27798 -0.39274 -0.019314 -0.27914 -0.050911 0.009829 -0.48271 -0.73202 -0.31926 -0.4652 -0.51125 -0.29497 0.40777 -0.042301 -0.093667 -0.57286 -0.37621 -0.65342 0.045991 -0.16154 -0.75685 -0.43306 -0.16891 -0.011198 -0.14207 -0.25587 -0.47794 -0.0056757 -0.3527 -0.013953 -0.45971 -0.56515 -0.30674 -0.037403 0.18041 -0.089434 -0.0069195 -0.18496 -0.88109 0.004719 -0.38351 -0.21849 -0.84875 0.14697 -0.29933 -0.59107 -0.15157 -0.07214 -0.72623 -0.16001 -0.01037 -0.47691 -0.23251 -0.10526 0.0020805 -0.45693 -0.6948 -0.0042929 0.17407 -0.21135 -0.73792 -0.44221 -0.019179 -0.29367 0.056473 -0.14065 -0.32182 Deletion Peak 48 - CN values 22q11.1 chr22:1-18218209(probes 1474406:1474873) chr22:1-17841067(probes 1474406:1474648) chr22:1-18115276(probes 1474406:1474808) 0.015552 0.015552 Actual Copy Change Given -1.0119 -0.42898 -0.43235 -0.13549 -0.18873 -0.2474 -0.30252 -0.49361 -0.19325 -1.0944 -0.19275 -0.0085766 0.0079133 0.016425 0.42805 0.55089 0.21499 -0.39651 0.027216 -0.19475 -0.17335 -0.0048461 -0.10552 -0.042245 -0.53875 -0.52491 -0.037355 -0.045093 -0.0028621 0.19847 0.2428 -0.054555 -0.49329 -0.048748 -0.074678 0.0097276 -0.034631 -0.011198 -0.72694 -0.39118 -0.07401 -0.04428 -0.16625 -0.062495 0.025531 0 -0.23214 0.42912 0.078582 -0.37741 0.44003 0.063509 -0.13807 -0.050776 -0.32797 -0.49965 -0.068374 -0.058753 0.35087 -0.76621 -0.066788 -0.67912 -0.081738 -1.0464 -0.18131 -0.60182 -0.35168 -0.18484 -0.030131 0.068747 0.019003 -0.59201 -0.0064372 -0.12239 -0.22096 -0.45222 -0.22059 -0.64959 -0.66077 -0.088104 -0.20224 -0.61278 -0.54361 -0.42929 -0.3078 -0.0056757 -0.25213 -0.06142 -0.47078 -0.066118 0.19056 0.022585 -0.043873 -0.13277 -0.035585 -0.53622 -0.2531 -0.26035 -0.085457 -0.0059522 -1.2929 0.34242 -0.19687 -0.096878 -0.10105 -0.068797 -0.52655 -0.15093 -0.060236 0.25777 0.68217 -0.22883 0.56845 0.031295 0.28445 -0.040846 0.53467 0.28739 -0.038442 -0.055499 -0.024388 0.9512 -0.25119 0.33755 0.9593 -0.14888 -0.38973 0.32543 -0.023703 -1.0043 0.25715 -0.047801 1.182 0.088113 -0.068261 0.021183 0.082332 -0.38022 -0.16288 -0.1832 0.015308 -0.013953 0.30554 -0.046312 0.07671 -0.025419 -0.32461 -0.48984 -0.60555 0.10249 -0.41744 -0.0091286 0.31113 -0.59195 0.30314 -0.38806 -0.020412 -0.5202 -0.095474 -0.75711 0.25027 -0.30874 0.057653 -0.052531 -0.10211 0.27159 0.37491 -0.007407 -0.20087 0.0070826 -0.039258 0.032845 0.74651 -0.060925 -0.042517 -0.027124 -0.031395 -0.025072 -0.42811 0.058935 -0.18081 0.030693 -0.24569 -0.31786 Deletion Peak 49 - CN values Xp21.1 chrX:32117084-32611359(probes 1504126:1504431) chrX:30870233-34033668(probes 1503467:1504687) chrX:32059923-32063450(probes 1504078:1504079) 8.658e-37 1.1207e-35 Actual Copy Change Given -0.1549 -0.021784 -0.55877 0.015447 -0.036129 -0.053206 0.059736 -0.024661 0.011679 -0.14013 -0.22883 0.011478 0.069808 -0.11678 -0.56744 -0.40617 -0.39006 -0.059109 0.022304 0.031577 -0.2589 0.0058309 -0.47342 -0.36318 -0.032996 -0.31692 -1.2929 -0.5715 0.0044882 -0.63178 0.010424 -0.055769 0.14696 -0.45511 -0.053071 0.012795 0.58059 0.024408 -0.26709 -0.10342 0.014609 -0.39163 0.056513 0 0.030451 0.013492 0.013564 0.09832 0.0099456 -0.29296 -0.46515 0.09101 -0.32158 -0.10276 -0.055903 0.0079149 0.15057 -0.17273 -0.33987 -0.4434 -0.024935 -0.19425 -0.82871 0.2456 0 -0.0078206 0.017824 -0.032587 0.10264 -0.009464 0 0.053579 -0.0061609 0.58829 -0.068663 -0.17069 0.020063 -0.0019399 0.0084743 -0.014498 0.05466 0.41915 -0.15873 -0.050349 -0.014503 0.027216 0.13628 0.27285 3.6569 -0.24788 0 -0.054286 0.02539 0.063223 0.0076392 -0.0065893 -0.64873 -0.071205 -0.59614 -0.082668 0.025531 -0.48008 -0.48617 0.30724 -0.0040162 0.15032 0.0018999 0.3348 -0.23266 -0.48575 -0.24326 0.088548 0.25308 -0.10734 0.015372 -0.05694 0.97234 -0.038714 -0.43572 -0.0092666 -0.16826 -0.51517 -0.16895 -0.47723 0.0029893 0.028481 -0.48449 -0.07067 -0.18043 0.13865 -0.46854 0.0043021 -0.20158 -0.35988 -0.16345 -0.11295 0.049966 -1.2929 0 0.67697 -0.074336 0.073115 0.029898 -0.014366 0.083342 -0.032041 0.031155 -0.61947 -0.24496 -0.46812 -0.010834 -0.34676 0 -1.2929 0.44172 -0.09644 0.14488 -0.11195 -0.23936 -0.12121 -0.025971 -0.015329 -0.040209 0.023706 -0.62846 -0.35613 -0.05469 0.1619 -0.64931 -0.32089 0.11402 -0.040073 2.3951 0.00064993 -0.51681 -0.14439 -0.1254 -0.063527 -0.60661 -0.24703 -0.39686 -0.052659 -0.052531 0.22753 Deletion Peak 50 - CN values Xp11.3 chrX:44702452-45008304(probes 1509418:1509540) chrX:44729401-44977416(probes 1509428:1509527) chrX:44759400-44947646(probes 1509436:1509517) 1.0788e-09 9.9334e-07 Actual Copy Change Given -0.1549 -0.021784 -0.56356 0.015447 0 -0.092345 0.032422 -0.64443 0.011679 -0.15144 -0.23361 0.011478 0.069808 -0.031905 -0.56744 -0.40617 -0.39006 -0.059109 -0.39608 0.017824 -0.2589 0.0058309 -0.47342 -0.36318 -1.2592 -0.31692 -0.55246 -1.2929 0.0044882 -1.2929 0.010424 -0.046989 0.14696 -0.45511 -0.053071 -0.031223 0.063939 0.024408 -0.27356 -0.10342 0.010842 -0.39163 0.056513 0 0.030451 0.013492 0.013564 0.11028 0.0022193 -0.29296 -0.23692 1.4075 -0.32158 -0.10276 -0.055903 0.053379 0.15057 -0.17273 -0.33987 -0.4434 -0.024935 -0.16541 0.07988 0.2456 0 -0.022952 0.017824 -0.00013862 -0.014641 -0.026934 0 0.0060259 -0.0061609 0.58632 -0.068663 -0.17069 0.028622 -0.010937 0.0084743 -0.014498 0.05466 0.45207 -0.15873 -0.050349 -0.014503 0.027216 0.13628 0.27884 -0.79711 -0.24788 0 -0.05594 0.02539 0.063223 0.0114 -0.0065893 -0.64873 3.6569 -0.59614 -0.082668 0.025531 -0.48008 -0.52446 0.30724 -0.0040162 0.15032 -1.0683 -0.32293 -0.22064 -0.48575 -0.24326 0.088548 0.25308 -0.14026 0.0096525 -0.05694 -1.2929 -0.038714 -0.43572 -0.0092666 -0.052666 -0.51517 -0.16895 -0.46121 -0.50675 -1.2929 -0.48449 -0.07067 -0.15713 -0.53652 -0.45629 0.0043021 -0.10599 -0.35988 -0.16345 -0.11295 0.042712 0.094556 0 0.41078 -0.046312 0.073115 0.042743 -0.014366 0.060079 -0.032041 0.093185 -0.61796 -0.24496 -0.46812 -0.010834 -0.34676 0.013772 0.093474 0.44172 -0.061017 0.14488 -0.11195 -0.23936 -0.12121 -1.0234 -0.015329 -0.040209 0.023706 -0.63074 -0.32542 -0.05469 0.1619 0.21269 -0.32089 0.11402 -0.040073 0.076998 0.00064993 -0.51681 -0.14439 -0.1254 -0.063527 -0.60661 -0.24497 -0.39686 0.0014872 -0.063032 0.25402 Deletion Peak 51 - CN values Xq11.2 chrX:62995064-64711702(probes 1514728:1515387) chrX:63397172-63430818(probes 1514872:1514878) chrX:63285749-63504463(probes 1514826:1514907) 0.035706 0.07951 Actual Copy Change Given -1.2929 -0.064588 0.15507 -0.023155 0 -0.092345 0.032422 0.0023068 0.011679 -0.13665 0.090575 -0.078278 0.069808 -0.031905 0.38849 0.026935 -0.0071076 -0.059109 -0.39608 0.017824 0.2577 0.0058309 0.26012 0.29294 -0.013127 0.12933 2.5612 -0.58048 0.0044882 1.9373 0.010424 -0.046989 0.14696 -0.45511 -0.053071 -0.031223 -0.017941 0.024408 -0.27356 -0.10342 0.010842 -0.39163 0.056513 0 0.030451 0.013492 0.0076392 0.11028 0.0022193 0.42553 0.38485 -0.48733 -0.32158 -0.13871 -0.055903 -0.011335 0.15057 -0.95942 -0.030687 0.68812 -0.024935 -0.16541 0.07988 0.2456 0 -0.022952 0.017824 0.0066061 -0.014641 -0.026934 0 0.0060259 -0.0061609 -0.24715 -0.068663 -0.17069 0.028622 -0.020549 0.0084743 -0.014498 0.05466 -0.40838 -0.15873 -0.33582 -0.014503 0.027216 0.13628 -0.085059 -0.3711 -0.23875 0 -0.054157 0.02539 0.063223 0.0114 -0.0065893 -0.64151 -0.13857 -0.59614 -0.082668 0.015727 0.47718 0.34275 0.30724 -0.0040162 0.11339 -0.012713 0.30697 -0.22064 0.37924 -0.24326 0.088548 0.24342 -0.14026 -0.058084 0.7797 1.0136 -0.038714 0.29056 -0.0092666 -0.065984 -0.46323 -0.18618 0.36986 0.031232 0.034536 0.24188 -0.07067 -0.15713 0.98039 0.094829 0.0043021 -0.10599 0.19512 -0.16345 -0.74273 -0.60999 0.11213 0 0.41078 -0.046312 0.073115 0.042743 -0.014366 0.044715 -0.032041 0.019503 0.1613 -0.24496 0.32995 -0.010834 0.20748 -0.03504 -1.0987 -0.10867 -0.061017 0.14488 -0.11195 -0.23936 -0.12121 -0.020001 -0.015329 -0.040209 0.023706 0.072185 0.24513 -0.05469 0.1619 0.21269 0.15636 0.11402 -0.040073 -0.34389 0.00064993 0.065942 -0.14439 -0.11851 -0.063527 0.24202 0.16955 0.3421 -0.056345 -1.058 0.67141 Deletion Peak 52 - CN values Xq21.33 chrX:96134519-96599519(probes 1527016:1527296) chrX:95939207-96865979(probes 1526913:1527379) chrX:96328683-96332854(probes 1527147:1527148) 0.00065553 0.0010475 Actual Copy Change Given -0.17373 -0.050911 0.18192 0.018523 0 -0.098509 0.032422 0.020063 0.015308 -0.13665 0.090575 0.0029133 -0.33445 -0.031905 0.38849 0.054945 -0.0071076 -0.059109 0.3653 0.0065262 0.33561 0.0031486 0.26012 0.27024 -0.038442 0.12933 0.56632 0.31274 0.0044882 0.26687 -0.057385 -0.046989 0.10643 0.51682 -0.053071 -0.089434 -0.0013046 0.024408 -0.27356 -0.11482 0.010424 0.52801 0.056513 0 0.030451 0.013492 0.0076392 0.11028 0.0022193 -0.31003 0.36652 -0.48596 0.17845 0.87508 -0.055903 -0.011335 0.15057 -0.17514 -0.35123 0.68812 -0.024935 -0.16541 0.07988 -0.20274 0 -0.022952 0.017824 0.0066061 -0.091056 -0.026934 0 0.025447 -0.0061609 -0.24715 -0.068663 -0.17069 0.028622 -0.020549 0 -0.014498 0.05466 -0.41762 -0.15362 -0.33582 -0.36125 0.027216 0.10085 -0.085059 -0.040073 0.086233 0 -0.054157 0.02539 0.090285 -0.017757 -0.0065893 0.53942 0.27017 -0.59614 -0.082668 0.015727 0.47718 0.35545 -0.079224 -0.0040162 0.15474 -1.1962 0.30697 -0.22064 0.37924 -0.24326 0.088548 0.24996 -0.13025 -0.86117 -0.059412 -0.18861 -0.038714 0.31097 -0.0092666 1.1916 -0.57308 -0.16183 0.38601 -0.0021411 -1.2929 0.24188 0 -0.0069195 0.15114 -0.5036 0.022787 0.19056 0.19512 -0.16345 -0.077212 0.035665 0.11052 0 -0.30522 -0.046312 0.073115 0.036305 0.088548 0.044715 -0.032041 0.026935 -0.61623 -0.24496 0.37924 -0.46252 0.20748 -0.03504 0.054376 -0.10867 -0.10397 0.14488 -0.1335 -0.23936 -0.12121 -0.020001 -0.010232 -0.082269 0.023706 0.86334 0.21975 -0.05469 0.1619 0.16291 0.14756 0.11402 -0.040073 -0.35738 0.00064993 0.065942 -0.059269 -0.11851 -0.063527 0.22607 0.16955 0.40228 0.069059 -0.073343 -0.31167