Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-KL-8323-01A-21D-2308-01	TCGA-KL-8324-01A-11D-2308-01	TCGA-KL-8325-01A-11D-2308-01	TCGA-KL-8326-01A-11D-2308-01	TCGA-KL-8327-01A-11D-2308-01	TCGA-KL-8328-01A-11D-2308-01	TCGA-KL-8329-01A-11D-2308-01	TCGA-KL-8330-01A-11D-2308-01	TCGA-KL-8331-01A-11D-2308-01	TCGA-KL-8332-01A-11D-2308-01	TCGA-KL-8333-01A-11D-2308-01	TCGA-KL-8334-01A-11D-2308-01	TCGA-KL-8335-01A-11D-2308-01	TCGA-KL-8336-01A-11D-2308-01	TCGA-KL-8337-01A-11D-2308-01	TCGA-KL-8338-01A-11D-2308-01	TCGA-KL-8339-01A-11D-2308-01	TCGA-KL-8340-01A-11D-2308-01	TCGA-KL-8341-01A-11D-2308-01	TCGA-KL-8342-01A-11D-2308-01	TCGA-KL-8343-01A-11D-2308-01	TCGA-KL-8344-01A-11D-2308-01	TCGA-KL-8345-01A-11D-2308-01	TCGA-KL-8346-01A-11D-2308-01	TCGA-KM-8438-01A-11D-2308-01	TCGA-KM-8439-01A-11D-2308-01	TCGA-KM-8440-01A-11D-2308-01	TCGA-KM-8441-01A-11D-2308-01	TCGA-KM-8442-01A-11D-2308-01	TCGA-KM-8443-01A-11D-2308-01	TCGA-KM-8476-01A-11D-2308-01	TCGA-KM-8477-01A-11D-2308-01	TCGA-KM-8639-01A-11D-2389-01	TCGA-KN-8418-01A-11D-2308-01	TCGA-KN-8419-01A-11D-2308-01	TCGA-KN-8421-01A-11D-2308-01	TCGA-KN-8422-01A-11D-2308-01	TCGA-KN-8423-01A-11D-2308-01	TCGA-KN-8424-01A-11D-2308-01	TCGA-KN-8425-01A-11D-2308-01	TCGA-KN-8426-01A-11D-2308-01	TCGA-KN-8427-01A-11D-2308-01	TCGA-KN-8428-01A-11D-2308-01	TCGA-KN-8429-01A-11D-2308-01	TCGA-KN-8430-01A-11D-2308-01	TCGA-KN-8431-01A-11D-2308-01	TCGA-KN-8432-01A-11D-2308-01	TCGA-KN-8433-01A-11D-2308-01	TCGA-KN-8434-01A-11D-2308-01	TCGA-KN-8435-01A-11D-2308-01	TCGA-KN-8436-01A-11D-2308-01	TCGA-KN-8437-01A-11D-2308-01	TCGA-KO-8403-01A-11D-2308-01	TCGA-KO-8404-01A-11D-2308-01	TCGA-KO-8405-01A-11D-2308-01	TCGA-KO-8406-01A-11D-2308-01	TCGA-KO-8407-01A-11D-2308-01	TCGA-KO-8408-01A-11D-2308-01	TCGA-KO-8409-01A-11D-2308-01	TCGA-KO-8410-01A-11D-2308-01	TCGA-KO-8411-01A-11D-2308-01	TCGA-KO-8413-01A-11D-2308-01	TCGA-KO-8414-01A-11D-2308-01	TCGA-KO-8415-01A-11D-2308-01	TCGA-KO-8416-01A-11D-2308-01	TCGA-KO-8417-01A-11D-2308-01	
Amplification Peak 1	8q23.3  	chr8:116272008-117149163(probes 807459:807953)	chr8:116277184-117148417(probes 807460:807952)	chr8:116277184-117157762(probes 807460:807955)	0.21756	 0.21756		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	2	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0	1	0	0	2	0	0	2	2	1	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	1	2	0	2	0	1	0	0	
Amplification Peak 2	15q22.31	chr15:1-66482794(probes 1229624:1253455)       	chr15:63792487-63907939(probes 1252129:1252185)	chr15:63792487-63917181(probes 1252129:1252188)	0.21756	 0.21756		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	1	0	0	0	1	0	0	0	0	1	0	0	1	0	2	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	2	0	1	0	1	0	0	1	0	2	1	0	0	0	1	0	0	1	1	0	0	2	2	2	0	0	
Amplification Peak 1 - CN values	8q23.3  	chr8:116272008-117149163(probes 807459:807953)	chr8:116277184-117148417(probes 807460:807952)	chr8:116277184-117157762(probes 807460:807955)	0.21756	 0.21756		Actual Copy Change Given	0.0068044	0.62497	0.0068044	0.0066653	-0.56516	0.044225	0.011539	0.042024	0.11588	0.035383	0.0043021	0.023706	0.093621	0.041317	-0.85063	0.064691	0.35888	-0.00055444	3.3525	0.0062481	0.0114	-0.00069303	0.0094491	1.5938	0.43716	-0.00027724	0.0054139	0.00036465	0.046842	0.51943	-0.80956	-0.0033243	-0.0019477	-0.0085798	0.57451	0.030451	0.0027745	1.3769	0.0081959	0	3.2926	1.3639	0.64983	0.0081959	0.64469	0.040185	-0.79978	0.23365	0.065513	-0.00039874	-0.54421	0.0033299	0.015168	-0.048493	0.32366	0.011121	0.01447	0.07988	0.67901	1.2094	-0.88186	1.1418	-0.17639	0.11844	-0.88905	-0.87338	
Amplification Peak 2 - CN values	15q22.31	chr15:1-66482794(probes 1229624:1253455)       	chr15:63792487-63907939(probes 1252129:1252185)	chr15:63792487-63917181(probes 1252129:1252188)	0.21756	 0.21756		Actual Copy Change Given	0.0073609	0.59219	0.047978	0.021744	0.50496	0.024969	0.004719	0.022725	0.12241	0.035947	0.0027745	0.027357	0.098415	0.11404	0.019847	0.0069791	0.20519	0.0041632	2.8282	0.020203	0.057368	0.029888	0.014609	1.5223	0.39678	0.00069327	0.0070826	0.0012481	0.014888	0.51194	0.016565	0.0012481	0.0038512	0.028759	0.61172	-0.22059	0.034254	-0.065045	0.014051	0.46417	1.391	-0.32815	0.67901	0.020343	0.63591	0	0.039619	0.86415	0.081033	0.91059	0.72206	-0.0018014	0.013632	-0.059807	0.31418	0.011121	0.015587	0.14622	0.63756	-0.04222	0.013492	1.2836	1.1632	1.0971	0.019223	0.0055529