Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold TCGA-AB-2803-03A-01D-0756-21 TCGA-AB-2804-03A-01D-0756-21 TCGA-AB-2805-03A-01D-0756-21 TCGA-AB-2806-03A-01D-0756-21 TCGA-AB-2807-03A-01D-0756-21 TCGA-AB-2808-03A-01D-0756-21 TCGA-AB-2809-03A-01D-0756-21 TCGA-AB-2810-03A-01D-0756-21 TCGA-AB-2811-03A-01D-0756-21 TCGA-AB-2812-03A-01D-0756-21 TCGA-AB-2813-03A-01D-0756-21 TCGA-AB-2814-03A-01D-0756-21 TCGA-AB-2815-03A-01D-0756-21 TCGA-AB-2816-03A-01D-0756-21 TCGA-AB-2817-03A-01D-0756-21 TCGA-AB-2818-03A-01D-0756-21 TCGA-AB-2819-03A-01D-0756-21 TCGA-AB-2820-03A-01D-0756-21 TCGA-AB-2821-03A-01D-0756-21 TCGA-AB-2822-03A-01D-0756-21 TCGA-AB-2823-03A-01D-0756-21 TCGA-AB-2824-03A-01D-0756-21 TCGA-AB-2825-03A-01D-0756-21 TCGA-AB-2826-03A-01D-0756-21 TCGA-AB-2827-03A-01D-0756-21 TCGA-AB-2828-03A-01D-0756-21 TCGA-AB-2829-03A-01D-0756-21 TCGA-AB-2830-03A-01D-0756-21 TCGA-AB-2831-03A-01D-0756-21 TCGA-AB-2832-03A-01D-0756-21 TCGA-AB-2834-03A-01D-0756-21 TCGA-AB-2835-03A-01D-0756-21 TCGA-AB-2836-03A-01D-0756-21 TCGA-AB-2837-03A-01D-0756-21 TCGA-AB-2838-03A-01D-0756-21 TCGA-AB-2839-03A-01D-0756-21 TCGA-AB-2840-03A-01D-0756-21 TCGA-AB-2841-03A-01D-0756-21 TCGA-AB-2842-03A-01D-0756-21 TCGA-AB-2844-03A-01D-0756-21 TCGA-AB-2845-03A-01D-0756-21 TCGA-AB-2846-03A-01D-0756-21 TCGA-AB-2848-03A-01D-0756-21 TCGA-AB-2849-03A-01D-0756-21 TCGA-AB-2850-03A-01D-0756-21 TCGA-AB-2851-03A-01D-0756-21 TCGA-AB-2853-03A-01D-0756-21 TCGA-AB-2854-03A-01D-0756-21 TCGA-AB-2855-03A-01D-0756-21 TCGA-AB-2856-03A-01D-0756-21 TCGA-AB-2857-03A-01D-0756-21 TCGA-AB-2858-03A-01D-0756-21 TCGA-AB-2859-03A-01D-0756-21 TCGA-AB-2860-03A-01D-0756-21 TCGA-AB-2861-03A-01D-0756-21 TCGA-AB-2862-03A-01D-0756-21 TCGA-AB-2863-03A-01D-0756-21 TCGA-AB-2864-03A-01D-0756-21 TCGA-AB-2865-03A-01D-0756-21 TCGA-AB-2866-03A-01D-0756-21 TCGA-AB-2867-03A-01D-0756-21 TCGA-AB-2868-03A-01D-0756-21 TCGA-AB-2869-03A-01D-0756-21 TCGA-AB-2870-03A-01D-0756-21 TCGA-AB-2871-03A-01D-0756-21 TCGA-AB-2872-03A-01D-0756-21 TCGA-AB-2873-03A-01D-0756-21 TCGA-AB-2874-03A-01D-0756-21 TCGA-AB-2875-03A-01D-0756-21 TCGA-AB-2877-03A-01D-0756-21 TCGA-AB-2878-03A-01D-0756-21 TCGA-AB-2879-03A-01D-0756-21 TCGA-AB-2880-03A-01D-0756-21 TCGA-AB-2881-03A-01D-0756-21 TCGA-AB-2882-03A-01D-0756-21 TCGA-AB-2883-03A-01D-0756-21 TCGA-AB-2884-03A-01D-0756-21 TCGA-AB-2885-03A-01D-0756-21 TCGA-AB-2886-03A-01D-0756-21 TCGA-AB-2887-03A-01D-0756-21 TCGA-AB-2888-03A-01D-0756-21 TCGA-AB-2889-03A-01D-0756-21 TCGA-AB-2890-03A-01D-0756-21 TCGA-AB-2892-03A-01D-0756-21 TCGA-AB-2893-03A-01D-0756-21 TCGA-AB-2894-03A-01D-0756-21 TCGA-AB-2895-03A-01D-0756-21 TCGA-AB-2896-03A-01D-0756-21 TCGA-AB-2897-03A-01D-0756-21 TCGA-AB-2898-03A-01D-0756-21 TCGA-AB-2899-03A-01D-0756-21 TCGA-AB-2900-03A-01D-0756-21 TCGA-AB-2901-03A-01D-0756-21 TCGA-AB-2903-03A-01D-0756-21 TCGA-AB-2904-03A-01D-0756-21 TCGA-AB-2905-03A-01D-0756-21 TCGA-AB-2906-03A-01D-0756-21 TCGA-AB-2907-03A-01D-0756-21 TCGA-AB-2908-03A-01D-0756-21 TCGA-AB-2909-03A-01D-0756-21 TCGA-AB-2910-03A-01D-0756-21 TCGA-AB-2911-03A-01D-0756-21 TCGA-AB-2912-03A-01D-0756-21 TCGA-AB-2913-03A-01D-0756-21 TCGA-AB-2914-03A-01D-0756-21 TCGA-AB-2915-03A-01D-0756-21 TCGA-AB-2916-03A-01D-0756-21 TCGA-AB-2917-03A-01D-0756-21 TCGA-AB-2919-03A-01D-0756-21 TCGA-AB-2920-03A-01D-0756-21 TCGA-AB-2921-03A-01D-0756-21 TCGA-AB-2922-03A-01D-0756-21 TCGA-AB-2923-03A-01D-0756-21 TCGA-AB-2924-03A-01D-0756-21 TCGA-AB-2925-03A-01D-0756-21 TCGA-AB-2926-03A-01D-0756-21 TCGA-AB-2927-03A-01D-0756-21 TCGA-AB-2928-03A-01D-0756-21 TCGA-AB-2929-03A-01D-0756-21 TCGA-AB-2930-03A-01D-0756-21 TCGA-AB-2931-03A-01D-0756-21 TCGA-AB-2932-03A-01D-0756-21 TCGA-AB-2933-03A-01D-0756-21 TCGA-AB-2934-03A-01D-0756-21 TCGA-AB-2935-03A-01D-0756-21 TCGA-AB-2936-03A-01D-0756-21 TCGA-AB-2937-03A-01D-0756-21 TCGA-AB-2938-03A-01D-0756-21 TCGA-AB-2939-03A-01D-0756-21 TCGA-AB-2940-03A-01D-0756-21 TCGA-AB-2941-03A-01D-0756-21 TCGA-AB-2942-03A-01D-0756-21 TCGA-AB-2943-03A-01D-0756-21 TCGA-AB-2944-03A-01D-0756-21 TCGA-AB-2945-03A-01D-0756-21 TCGA-AB-2946-03A-01D-0756-21 TCGA-AB-2947-03A-01D-0756-21 TCGA-AB-2948-03A-01D-0756-21 TCGA-AB-2949-03A-01D-0756-21 TCGA-AB-2950-03A-01D-0756-21 TCGA-AB-2952-03A-01D-0756-21 TCGA-AB-2954-03A-01D-0756-21 TCGA-AB-2955-03A-01D-0756-21 TCGA-AB-2956-03A-01D-0756-21 TCGA-AB-2957-03A-01D-0756-21 TCGA-AB-2959-03A-01D-0756-21 TCGA-AB-2963-03A-01D-0756-21 TCGA-AB-2964-03A-01D-0756-21 TCGA-AB-2965-03A-01D-0756-21 TCGA-AB-2966-03A-01D-0756-21 TCGA-AB-2967-03A-01D-0756-21 TCGA-AB-2968-03A-01D-0756-21 TCGA-AB-2969-03A-01D-0756-21 TCGA-AB-2970-03A-01D-0756-21 TCGA-AB-2971-03A-01D-0756-21 TCGA-AB-2972-03A-01D-0756-21 TCGA-AB-2973-03A-01D-0756-21 TCGA-AB-2974-03A-01D-0756-21 TCGA-AB-2975-03A-01D-0756-21 TCGA-AB-2976-03A-01D-0756-21 TCGA-AB-2977-03A-01D-0756-21 TCGA-AB-2978-03A-01D-0756-21 TCGA-AB-2980-03A-01D-0756-21 TCGA-AB-2982-03A-01D-0756-21 TCGA-AB-2983-03A-01D-0756-21 TCGA-AB-2984-03A-01D-0756-21 TCGA-AB-2985-03A-01D-0756-21 TCGA-AB-2986-03A-01D-0756-21 TCGA-AB-2987-03A-01D-0756-21 TCGA-AB-2988-03A-01D-0756-21 TCGA-AB-2989-03A-01D-0756-21 TCGA-AB-2990-03A-01D-0756-21 TCGA-AB-2991-03A-01D-0756-21 TCGA-AB-2992-03A-01D-0756-21 TCGA-AB-2993-03A-01D-0756-21 TCGA-AB-2994-03A-01D-0756-21 TCGA-AB-2995-03A-01D-0756-21 TCGA-AB-2996-03A-01D-0756-21 TCGA-AB-2997-03A-01D-0756-21 TCGA-AB-2998-03A-01D-0756-21 TCGA-AB-2999-03A-01D-0756-21 TCGA-AB-3000-03A-01D-0756-21 TCGA-AB-3001-03A-01D-0756-21 TCGA-AB-3002-03A-01D-0756-21 TCGA-AB-3005-03A-01D-0756-21 TCGA-AB-3006-03A-01D-0756-21 TCGA-AB-3007-03A-01D-0756-21 TCGA-AB-3008-03A-01D-0756-21 TCGA-AB-3009-03A-01D-0756-21 TCGA-AB-3011-03A-01D-0756-21 TCGA-AB-3012-03A-01D-0756-21 Amplification Peak 1 1p33 chr1:47516423-47533836(probes 23153:23159) chr1:47517592-47533629(probes 23154:23158) chr1:47517592-47555264(probes 23154:23161) 0.025106 0.025106 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 2 11q23.3 chr11:118341650-118354357(probes 1039906:1039930) chr11:118345795-118354342(probes 1039907:1039929) chr11:118336967-118358092(probes 1039886:1039950) 1.145e-08 1.145e-08 0: t<0.1; 1: 0.10.9 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 1 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 3 20q11.21 chr20:26197900-30867110(probes 1433847:1434312) chr20:29843974-30864278(probes 1433848:1434311) chr20:29843974-30871328(probes 1433848:1434314) 0.18592 0.18592 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 4 21q22.2 chr21:39509205-42282190(probes 1469472:1471687) chr21:39699030-40187749(probes 1469570:1470029) chr21:37355960-48129895(probes 1468157:1474548) 7.0827e-07 7.0827e-07 0: t<0.1; 1: 0.10.9 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 1 3p13 chr3:64670406-75960297(probes 295443:302859) chr3:73040516-73123913(probes 301312:301356) chr3:70394697-73145134(probes 299503:301368) 0.020059 0.020059 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 2 5q31.2 chr5:112352080-156195999(probes 526770:552945) chr5:138608725-138620470(probes 542109:542111) chr5:83013419-170793857(probes 511869:562514) 1.2971e-07 1.2971e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 3 7p12.1 chr7:50632522-51004541(probes 692731:693047) chr7:50655370-50871350(probes 692741:692954) chr7:50748315-50749014(probes 692848:692849) 0.00078337 0.00078337 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 4 7q32.3 chr7:126055410-159138663(probes 727586:744560) chr7:131662521-132336576(probes 730502:730891) chr7:123008687-159138663(probes 725957:744560) 3.4101e-05 3.4101e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 Deletion Peak 5 9q21.32 chr9:1-141213431(probes 825685:893360) chr9:84485175-86621532(probes 858324:859661) chr9:84490132-84506000(probes 858325:858326) 0.24147 0.24355 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 6 12p13.2 chr12:11415451-13714180(probes 1056214:1057756) chr12:12467955-13370862(probes 1056977:1057364) chr12:10472014-16038555(probes 1055819:1059131) 0.0023827 0.0024153 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 7 12q21.33 chr12:88430194-96043393(probes 1098342:1103211) chr12:91356041-91414107(probes 1100035:1100049) chr12:91366598-91370424(probes 1100043:1100044) 0.097556 0.09527 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 8 16q23.1 chr16:66750041-90354753(probes 1300792:1314314) chr16:78015651-78104020(probes 1306769:1306786) chr16:66883120-90354753(probes 1300848:1314314) 0.0010312 0.00096181 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 9 17p13.2 chr17:1-7744654(probes 1314315:1317497) chr17:3612763-3708033(probes 1315435:1315489) chr17:3656367-3663578(probes 1315463:1315464) 0.12511 0.11895 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 10 17q11.2 chr17:28936804-29722618(probes 1325486:1325709) chr17:29597078-29651479(probes 1325660:1325681) chr17:28811301-30298853(probes 1325423:1326008) 0.0003238 0.0003238 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 Deletion Peak 11 18p11.21 chr18:12273033-13664017(probes 1358058:1358876) chr18:12531263-12728656(probes 1358195:1358260) chr18:12408935-13617286(probes 1358125:1358849) 0.020884 0.022472 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 12 20q13.13 chr20:30824328-55265903(probes 1434301:1449623) chr20:49116791-49210155(probes 1445248:1445412) chr20:49154555-49155103(probes 1445331:1445332) 0.14746 0.15019 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 1 - CN values 1p33 chr1:47516423-47533836(probes 23153:23159) chr1:47517592-47533629(probes 23154:23158) chr1:47517592-47555264(probes 23154:23161) 0.025106 0.025106 Actual Copy Change Given 0 -0.0044312 -0.0012473 -0.0013858 -0.023938 0.00097064 -0.0016629 -0.027706 0 -0.0079299 -0.013815 0.00069327 0.0022193 -0.00097017 -0.010508 -0.0045695 -0.0008316 0.7353 0.0038854 2.0494 0.00083195 0.0076392 -0.016183 -0.0008316 0.0023581 0 0.0067676 -0.00055444 -0.0027707 -0.0011717 -0.0077482 0.0034687 0.00047302 -0.020436 0.0079175 -0.0036011 0.00019902 -0.0051227 0.0013868 0 0.0013868 0.0011093 -0.0020784 0.0068995 0.0028706 -0.0078429 -0.00027724 0.0063871 -0.0172 -0.011071 0 -0.00073036 -0.0016629 0.006109 0.0044411 0 0.00083195 0.0027069 0.00027728 -0.0043492 -0.0023553 -0.030113 -0.00097017 -0.0029091 0.00013863 -0.011598 0 -0.0051227 0 -0.00092799 0.89726 -0.011493 -0.0082598 -0.0012473 -0.01409 -0.0037612 0.0013868 0.013353 -0.0013858 -0.03749 -0.0018014 -0.013747 -0.0063068 -0.013777 -0.0051834 -0.0051227 -0.0029919 -0.0046835 -0.0026322 0.0044904 0.0029391 0.0016161 0.0012492 -0.0059522 0.766 0.0021302 -0.0024938 0 -0.028417 -0.0072836 0.0036076 -0.020275 -0.014916 -0.0083817 0 -0.0024938 -0.018216 -0.005711 -0.0073339 -0.04754 -0.0031859 -0.0060904 -0.0027707 -0.0092651 0 0.00041593 -0.0084385 -0.015466 -0.010508 -0.0038779 -0.0036011 -0.0042929 -0.006505 1.6055 0.00159 -0.016704 -0.01114 -0.021707 -0.013953 0.0013868 0.036753 -0.012146 0.63301 -0.0089906 -0.021187 -0.0010921 -0.0030475 -0.010307 0.0031107 0.0028225 0.73988 -0.0086725 -0.079476 -0.015604 0 -0.0034514 -0.00013862 0.00041593 -0.0054439 -0.0095316 -0.0063668 -0.0072566 0.0015255 -0.024008 -0.0030225 -0.0034627 0 -0.0029091 -0.0057309 -0.009143 0.00055459 -0.0014588 0.00259 0 0.0024969 -0.0058495 0.0019949 -0.0040661 -0.0008316 -0.015604 -0.0008316 -0.0013858 0 0.0012481 -0.0008316 -0.0016629 0.0016642 -0.0056757 -0.0011087 -0.012162 -0.002485 -0.0084036 -0.0011087 0.0084743 -0.0030269 -0.0024938 -0.0050733 0.004719 0.00041593 -0.00027724 -0.0016629 Amplification Peak 2 - CN values 11q23.3 chr11:118341650-118354357(probes 1039906:1039930) chr11:118345795-118354342(probes 1039907:1039929) chr11:118336967-118358092(probes 1039886:1039950) 1.145e-08 1.145e-08 Actual Copy Change Given 0.011121 -0.0046808 0.36543 -0.002251 0.0070826 -0.0022168 0.0012481 0.00167 0.0080567 -0.0088526 0.00055459 -0.0022168 -0.0033243 0.0050443 -0.0026209 0.0068044 -0.0013858 1.4366 -0.0045695 -0.0020622 -0.0042929 -0.0042929 -0.0065146 0 -0.00077265 0.012143 0.0033157 2.0857 -0.00069303 0.0055529 -0.01454 -0.0027707 -0.0030475 -0.005814 0.7756 0.0012481 -0.0036792 0.0070826 0.0016642 -0.00069303 -0.00041585 -0.0027145 -0.005261 0.016241 -0.0033243 -0.00055444 -0.0031859 -0.00027724 0.039054 0.0027745 -0.086253 0.0013494 -0.0011087 -0.034744 -0.0042929 -0.00055444 -0.00097017 -0.0038779 0.0056919 1.3631 0.003191 -0.01009 -0.0026322 -0.0012473 -0.0036011 0.0016187 -0.0008316 0.047694 -0.0026817 -0.00069303 -0.003893 -0.0065249 -0.0031452 -0.0019399 0.0020805 -0.015848 0.00055459 0.79723 -0.0012473 0.026795 -0.0022168 -0.0069435 -0.0018014 -0.0020784 0.0027745 -0.0012473 0.0030522 -0.0015 0.00055459 -0.0032624 -0.0028834 -0.0078863 -0.0056746 -0.0026322 2.8182 -0.0055472 0.0027745 -0.00013862 -0.0048461 -0.013936 0.0023581 -0.0045091 0.00069327 0 0.023566 0.0016642 0.85858 -0.0036011 -0.010346 -0.0091286 0.00083195 -0.0095426 2.7243 -0.0041546 0.00052188 -0.00013862 -0.0041546 -0.010508 0.0022193 -0.007472 -0.0036778 -0.0014634 -0.001474 1.9182 -0.00013862 -0.0059522 -0.0017435 -0.0034627 0 0.00097064 0.016006 0.0021363 1.2432 -0.0015243 0.024598 -0.0010921 -0.00081171 1.0681 -0.0015243 0.00039631 -0.0069195 0.0064295 0.021884 0.0040243 0.0063871 -0.0010973 0.0012481 1.4668 0.0030522 8.8604e-05 0.0020805 0.0015255 0.0038854 0.72206 0.0071077 -0.00041585 -0.006505 -0.00027724 0.75153 0 1.5546 0.0012481 -0.0066886 -0.00055444 1.3189 0.0066029 -0.0067284 -0.0019399 -0.00041585 0.00097064 -0.00076085 -0.0008316 -2.0451e-05 0.0024356 0.0091705 0 -0.00013862 -0.00022449 -0.0094046 -0.0011867 0.00028604 0.0093098 -0.00055444 0 0 0.0034687 -0.0026322 -0.0091286 -0.0008316 0 0.0019418 Amplification Peak 3 - CN values 20q11.21 chr20:26197900-30867110(probes 1433847:1434312) chr20:29843974-30864278(probes 1433848:1434311) chr20:29843974-30871328(probes 1433848:1434314) 0.18592 0.18592 Actual Copy Change Given 0.010982 -0.0055375 0.0049969 -0.0002721 -0.022154 -0.005814 0.0011093 -0.0019399 0.00083195 -0.00097017 -0.0077482 0.0070826 -0.0050864 -0.0018014 -0.005814 0.003191 0.0012481 -0.043195 -0.0027707 -0.0038617 -0.0030475 -0.0048461 0.0029133 0.0024969 -0.0022168 0.0015713 3.417 -0.010508 0.00055459 -0.00041585 0.010383 0.00458 0.00027728 0.00458 -0.022469 -0.011335 0.0020022 -0.0063183 0.003191 -0.0008316 0.00069327 0.0038854 -0.0033243 0.023802 -0.0037395 -0.0027707 -0.0015243 -0.002523 0.031155 -0.0011331 0.0048579 -0.0065422 0.0026357 -0.022606 0.0065262 -0.0051227 -0.010922 -0.0036011 0.0041632 0 -0.011749 0.37118 -0.00041585 -0.0023553 0.0016642 0.010006 0.0012481 -0.022744 -0.0064162 -0.00041585 -0.024813 -0.0058339 -0.011019 -0.0019399 -0.0088526 0.036069 -0.0015243 -0.050235 -0.0019399 -0.017391 0.00055459 -0.0083005 -0.011473 0.0020373 0.0058309 -0.008964 -0.0031859 -0.0030232 -0.0022168 0.0026263 0.011844 0.0038854 -0.013401 -0.0047797 0.80247 -0.0033341 0.0026357 -0.00027724 -0.045499 -0.0067813 0.0098669 -0.0016653 -0.00092679 -0.0082758 0.001803 0.010285 -0.0098185 -0.021647 0.0011093 -0.033541 0.001803 -0.00041585 -0.0051227 0.0038854 0.0017703 0.0081959 -0.014228 -0.013677 -0.0059522 0 -0.0018014 0.0029133 -0.0034627 -0.0033243 -0.016154 -0.0026322 -0.00063513 -0.017391 -0.021098 -0.0015243 0.020456 -0.00081567 -0.077797 -0.010094 -0.04834 0.0018196 -0.0018014 0.0011731 -0.0085766 0.007906 -0.048613 -0.00092793 -0.074144 -0.0092666 0.0066653 -0.0023439 0.0034687 0.00013863 -0.0016709 -0.0037149 0.00083195 -0.011473 -0.011313 -0.00095661 -0.00094515 -0.0016629 0.0027745 -0.0027707 0.013124 -0.0067206 0.00055459 -0.0011087 0.003423 0.0040243 0.00013863 -0.0010323 0.01229 0.0012481 -0.0011087 -0.00027724 -0.0012473 0.0029133 -0.0016629 0.0013868 0.0084743 -0.0034627 -0.0059522 0.0033299 -0.00055444 -0.0092666 0.0013955 0.012237 -0.0022823 0.0098669 -0.0011087 -0.0062286 -0.012713 0.0015255 -0.0012473 0.00083195 0.0015255 Amplification Peak 4 - CN values 21q22.2 chr21:39509205-42282190(probes 1469472:1471687) chr21:39699030-40187749(probes 1469570:1470029) chr21:37355960-48129895(probes 1468157:1474548) 7.0827e-07 7.0827e-07 Actual Copy Change Given 0.0089712 -0.0044312 -0.0059522 -0.00013862 0.85878 -0.0095426 -0.015604 0.0051359 0.016808 0.0015255 2.8145 0.0049969 0.0036076 -0.0037395 -0.0071958 0 -0.0042929 -0.047936 -0.0008316 0.0026519 0.0041632 -0.0034627 0.010982 -0.0011087 0.0015255 0.004348 0.73718 -0.0031859 0.0062481 -0.0019399 -0.006505 0.0034996 -0.006505 -0.0012473 0.022304 -0.0024938 0.0039459 -0.0047079 0.0040243 -0.005814 -0.0092666 -0.0026322 -0.0059522 -0.00406 -0.0033723 0.00069327 -0.0053992 0.00069327 0.014609 0.0041632 0.0054139 -0.0061276 -0.0069195 1.8153 0.0033299 -0.00079244 -0.005261 0.0033299 0.90036 -0.0053992 -0.0011087 1.2878 -0.0008316 0.0011093 -0.0041546 0.0020805 -0.0013858 0.031295 -0.0040657 -0.0018014 -0.017269 0.0078975 0.0096294 0.0079175 -0.0078863 1.0113 0.0056919 -0.0041546 -0.0041546 0.99634 0.00041593 -0.0022168 0.036088 0.0023581 -0.0013858 -0.0036011 0.00041593 0.0062725 -0.0020784 -0.0038872 -0.89877 0.00055459 0.89407 -0.0020784 -0.0051227 0.003459 -0.0018014 0.00097064 2.5767 -0.0056757 -0.0088526 0.0087528 0.031436 0.0095883 -0.0051227 -0.0066432 -0.0011087 -0.013677 -0.00041585 0.0075885 0.0079175 -0.011611 -0.0044312 0.011958 0.0071889 0.044583 -0.0095426 -0.0067813 -0.0044312 -0.0088526 0.0070826 -0.0027707 -0.006505 0.0020805 0.80597 -0.0059522 0.0036656 2.9077 -0.011335 0.32576 0.0375 -0.00067709 -0.033814 -0.007472 -0.071291 -0.00053783 0.00069327 -0.0079609 -0.0083005 -0.0033358 -0.044822 -0.0053571 -0.051721 0.015028 0.011818 -0.0091173 -0.0040162 -0.00013862 0.011121 0.009206 -0.0012473 0.63134 -0.005814 -0.018902 0.0032161 -0.0008316 0.0040243 0.003191 -0.0057637 0.0036076 -0.0040162 0.0058309 -0.00018425 0.0013868 0.00097064 -0.00061661 0.0092238 0.0013868 0.0056919 0.0081959 -0.0073339 -0.0016629 -0.0098185 -0.0073339 0.00013863 -0.0055375 -0.0019399 -0.00041585 -0.00027724 0.0034687 0.0022281 -0.015054 -0.0040162 0.001803 -0.0051227 0.0041632 -0.016841 -0.0056757 -0.0077482 0.0026357 -0.00097017 Deletion Peak 1 - CN values 3p13 chr3:64670406-75960297(probes 295443:302859) chr3:73040516-73123913(probes 301312:301356) chr3:70394697-73145134(probes 299503:301368) 0.020059 0.020059 Actual Copy Change Given 0.0020805 0.0033299 -0.0016117 -0.0030475 0.0027745 0.001425 -0.73248 -0.0069608 0 0.004719 -0.33063 0 -0.0078863 -0.00027724 0.0016642 -0.0030667 -0.001659 -0.016429 -0.0022168 0.00098686 -0.00041585 -0.0013858 -0.0037395 0.00018307 -0.0049844 -0.00050866 0.018509 0.0056919 0 -0.0038779 0.00069327 -0.017226 0.0027745 -0.0013355 0 0.0040243 0 0 -0.0051008 0.0037465 0.0019418 -0.0023553 0 -0.012206 -0.00069303 -0.00069303 0.003191 -0.00010905 -0.023149 -0.0072343 -0.12447 0.0016269 0.00097064 -0.41564 -0.0038779 0.0029133 -0.0013304 0 0.36592 0.00041593 0.00092927 0.0056965 0.0033299 0.0058309 0.0029133 -0.00041585 -0.00041585 0.0083351 0.0006437 -0.0012473 -0.00098538 0.0014097 -0.0014835 -0.00027724 0.0091705 -0.040588 -0.0016629 -0.82122 0.00063014 0.00065645 -0.00069303 0.0020805 0.0063871 0 -0.0034322 0.0063039 0.0018367 -0.0069922 0.00097064 -0.0054564 -0.026007 0 0.0068055 0.00083195 0.010785 -0.001257 -0.00010381 0.0026357 -0.96624 -1.0407 0 0.00013863 -0.0083005 0.0036076 0.00097064 0.0036367 0.0049969 0.001803 0.0062481 0.015168 -0.0008316 -0.00013862 0.0081959 0.0038854 0.0031583 -0.0031321 0.0012481 0.012097 0.0050787 0.00041593 0.0023581 0.0037862 0.0010606 0.0015255 0.074552 0.0022193 0.0021385 0.0095883 0.018663 -0.0056231 -0.29378 -0.0010928 0.004719 -0.0013858 0.013973 0.0040409 0.0043021 -0.0040004 -0.063032 -0.0025053 0.010842 0.00073554 -0.012793 -0.0023216 0.0055529 0.0025083 4.7403e-05 0.0024969 0.0023058 0 0.0049423 0.0037465 0 -0.00013862 -0.0012223 0.0024969 0.0049969 -0.00055444 0.0012985 0.0023581 -0.0013858 0.0022193 -0.00018425 0.0010458 -0.0008316 0.0013246 0 0.00055459 0.00061863 0 0.00055459 -0.0036011 0.00041593 -0.0011087 0.0013868 0.0043628 0.0013868 -0.0008316 0.0024969 -0.005261 0.0044498 0.0057232 -0.0023513 0 -0.0064438 -0.0028559 0.00097064 0.00597 0.0016642 -0.0013879 0.001803 Deletion Peak 2 - CN values 5q31.2 chr5:112352080-156195999(probes 526770:552945) chr5:138608725-138620470(probes 542109:542111) chr5:83013419-170793857(probes 511869:562514) 1.2971e-07 1.2971e-07 Actual Copy Change Given -0.0022168 0.0037778 -0.00061446 0.0075 -0.00013862 0.0043021 0.010285 0.0027745 -1.005 -0.00013862 -0.87509 -0.019177 0.0084743 -0.00097017 0.016815 0.00041593 0.00597 0.00013863 0 0.0025131 -0.001312 -0.0011087 0.00013863 -0.00069303 0.0036076 0.0057378 -0.76202 -0.00027724 0 0.0022193 0.015624 -0.00013862 0.003191 0.0033299 -0.7967 0 0.0061696 0.0036076 0.00458 0.0043021 -0.0011087 0 0.0051359 -0.86344 -0.012411 0 0.00041593 0.0072217 -0.001083 -0.0031526 -0.69803 -0.00060547 0.00069327 -0.55987 0.00083195 0.0019418 0.0015255 0.0011093 -0.0018014 0.00027728 0 -0.56937 -0.0016629 0.011958 0 0.0025424 0.0030522 0.030451 0.0018922 0 -0.96424 0.0032122 -0.0082598 -0.0012473 0.018103 -0.03095 -0.0015243 -0.82407 0.0049969 0.021744 0.0019418 0.0030522 0.0043021 0.0014679 0.0011468 0.019067 -0.0043522 0.0014814 -0.0011492 -0.0030569 -0.0055119 0.0019418 0.01693 0.00069327 -0.85478 -0.0013956 0.0022193 -0.0014523 -0.93757 0.0050677 0.0015997 0.0065262 0.016845 -0.0011087 0 -0.0027707 -0.0031626 0.014888 0 -0.93016 0 0.00083195 0.012708 0.00097064 0.0098341 -0.0030475 0.0011093 0.040178 0.014888 0.00013863 0 0.0050406 0.0054139 0.00013863 -0.601 0 0.0033879 -0.64528 -1.0532 0.0051359 0 0.0037038 -0.75331 0.018943 -0.019403 0.0044577 0.0027745 0.0038104 0.0069435 0.0044295 -0.92137 0.012 0.010476 0 0.010285 0.0016756 0.0037465 0 0.0016642 0.0059198 0.0097276 0.0055529 -0.0033243 0.0080567 -0.0034377 0.00597 -0.0045695 -0.0012473 0.0012985 -0.00055444 -0.0045695 0.0034004 0.0020348 -0.00097017 0 -6.2182e-05 0.00255 -0.0008316 0.00024425 -0.0016629 0 0 0.0013868 -0.0033243 0.00083195 0.0054139 0.00027728 0.0034687 0.0030522 0.0041632 0.00084071 0.0022193 0.0051359 -0.00069303 0.00083195 0.00083195 0.012376 0.003191 0 0.00037421 -0.00013862 Deletion Peak 3 - CN values 7p12.1 chr7:50632522-51004541(probes 692731:693047) chr7:50655370-50871350(probes 692741:692954) chr7:50748315-50749014(probes 692848:692849) 0.00078337 0.00078337 Actual Copy Change Given 0.0079363 0.0054139 0.019923 0.058652 0.0042438 0.013353 -0.0019399 -0.010232 0.0020805 0 -0.041431 0.0068044 0.0063871 0.0052749 -0.90174 0.0070826 0.0068044 0.03214 0.012237 0.014486 0.01419 0.029325 -0.013953 0.00027728 0.0058309 0.0068503 0.083617 0.014888 0.0030522 0.0052749 0 0.00055459 0.021603 0.0040243 -0.74579 0.0029133 0.0054744 -0.00064115 0.015447 0.0061256 -0.0011087 -0.0011087 0.010467 0.014984 0.0072482 0.0073609 0.014609 -0.0013858 0.014609 -0.00013862 -0.63453 0.0039991 0.0023646 -0.056038 0.012876 0.0020805 0.017963 0.012097 0.012237 -0.0034301 -0.00055444 0.018807 0.0073609 0.018803 0.023847 0.015587 0.0029001 -0.9551 0.01917 0.019836 -0.066132 0.0034488 0.012976 0.012515 -0.63252 0.024247 0.0091105 -0.73888 0.019503 0.12241 0.018803 0.012376 0.022444 0.016006 0.028903 -0.69162 0.022585 0.018268 0.015308 0.025942 0.00071898 0.012516 0.027537 0.0070826 -0.83543 0.0076294 0.014051 0.022024 0.02411 0.01229 0.0071438 0.015168 0.017706 0.021326 0.0090312 0.068808 0.017404 -0.30487 0.0075 -0.85178 0.030451 0.0073169 0.062223 0.006945 0.01877 0.015188 0.039619 -1.0176 -0.68086 0.00597 0.013213 0.0087528 0.025531 0.012795 0.067088 0.0095883 0.016763 0.036431 0.079591 0.012795 -0.26167 0.014067 0.027778 -0.81551 -0.00064415 0.036528 0.011539 0.014953 -0.10867 0.0013836 -0.80675 0.0096308 0.0083428 0.012237 0.012655 0.020774 0.0026357 0.0094653 0.0080567 0.011629 0.013911 0.010703 0.019363 0.0083351 0.0093349 0.010424 0.0081959 0.012237 0.012008 0.012376 0.0082747 0.0066653 0.0068977 0.0075 0.0090312 0.0074376 -0.05194 0.0076392 0.022024 0 0.015168 0.008892 -0.0006983 0.0033299 -0.0020948 0.012516 0.0095883 0.0086135 0.011958 0.0093098 0.0098758 0.00047844 0.008892 0.0072217 0.0016642 0.014888 0.066372 0.0048002 0.0027745 0.010703 0.011539 Deletion Peak 4 - CN values 7q32.3 chr7:126055410-159138663(probes 727586:744560) chr7:131662521-132336576(probes 730502:730891) chr7:123008687-159138663(probes 725957:744560) 3.4101e-05 3.4101e-05 Actual Copy Change Given 0.016286 0.0054139 -0.36624 0.058652 0.0042438 0.010696 -0.0019399 0.0066653 0.0020805 0 -0.041431 0.0068044 0.0063871 0.0052749 -0.89567 0.0070826 0.0069435 0.03214 0.012237 0.014486 0.01419 0.016985 -0.013953 0.00027728 0.0058309 0.0029592 -0.72226 0.014888 0.0030522 0.0103 0 0.00055459 0.021603 0.0040243 -0.73397 0.0029133 0.0054744 0.0011093 0.015447 0.010982 -0.0011087 -0.0013858 0.010467 0.014984 0.0072482 0.0073609 0.014609 -0.0013858 -0.0096806 -0.00013862 -0.63453 0.01192 0.0038854 0 0.012876 0.0015255 0.017963 0.012097 0.012237 0.011735 -0.00055444 0.018248 0.0073609 0.018803 0.023847 0.015587 0.0090724 -0.94481 0.028853 0.029044 -0.90602 0.0034488 0.015908 0.017264 -0.6296 0.024247 0.017194 -0.73888 0.019503 -0.96022 0.018803 0.012376 0.022444 0.016006 0.026493 -0.68597 0.022585 0.018268 0.025671 0.031708 0.0014125 0.012516 0.03549 0.0070826 0.041175 0.0040145 0.014051 0.022024 0.026654 0.020448 0.0071438 0.011742 0.014925 0.024548 0.0090312 -0.88369 0.017404 -0.30487 0.0075 -0.85043 0.030451 0.021884 -0.90677 0.021183 0.01877 0.020763 0.039619 -1.0344 -0.68086 0.00597 0.013213 0.0063871 0.028181 0.012795 -0.38022 0.0095883 0.015226 0.05694 -1.0239 0.012795 -0.26167 0.014067 0.027778 -0.80509 0.034586 0.036528 0.011539 0.014953 -0.096968 0.010844 -0.80675 0.0096308 0.041741 0.012237 0.012655 0.01865 0.0026357 0.0049711 0.0077582 0.011629 0.013911 0.010703 -0.0023553 0.0058309 0.0093349 0.010424 0.0081959 0.012237 0.012008 0.012376 0.013632 0.0066653 0.0012432 0.0075 0.0090312 0.0074376 0.0082492 0.0076392 0.022024 0 0.012237 0.008892 0.0011093 0.0045687 0.003191 0.012516 0.0095883 0.0086135 0.011958 0.0093098 0.0098758 0.015935 0.0083351 0.0072217 0.0016642 0.014888 -0.77922 0.0048002 0.0083351 0.010703 0.011539 Deletion Peak 5 - CN values 9q21.32 chr9:1-141213431(probes 825685:893360) chr9:84485175-86621532(probes 858324:859661) chr9:84490132-84506000(probes 858325:858326) 0.24147 0.24355 Actual Copy Change Given -0.0056757 0.001803 0.0022193 -0.0038339 0.0049969 -0.0016629 -0.0024938 -0.0053936 0.0033299 0.0023581 0.0027745 0.0019418 0.0097276 -0.0022612 -0.00097017 -0.0028531 0.0022348 -0.028069 0.0040243 0.00098686 0.0058309 0.0044411 -0.00069303 0.015727 -0.0040162 0.00018443 -0.0041687 -0.00069303 0.00013863 0.00027728 0.011539 0.00458 0.0011075 0.00097064 -0.0062286 -0.0016388 -0.0025061 -0.002638 -0.0014222 0.0022193 0 -0.0019399 -0.0022168 0.0049529 -0.0027413 0.00458 -0.0011087 0.00055459 0.0027745 0 0.0054139 -0.019763 0.0020805 0.0043021 0.0079175 -0.0015243 0.00027728 -0.0029091 0.0036076 -0.0040162 0.00013863 -0.58186 0.00458 0.00016949 -0.0053992 -0.92882 -0.0015243 -0.0020181 -0.0065544 0.0023581 -0.0072109 -0.0052809 0.0029542 0 0.0043021 -0.0033243 0.0024969 -0.0083005 -0.79436 -0.0092141 -0.00069303 -0.0012473 0.51786 -0.012103 -0.0037395 -0.00013862 -0.0023553 -0.0053749 -0.0036011 -0.0050827 0.0044668 -0.0020784 -0.012777 -0.00055444 -0.017116 -0.0020625 -0.0027707 0.00097064 -0.012989 0.0013868 0.0009344 0.0016642 0.00055051 -0.018078 -0.0019399 0.00458 -0.0038779 0 0.0015255 -0.017254 -0.0013279 0.0016642 -0.00041585 0.0049969 -0.0046022 -0.00069303 -0.0055375 -0.0054386 -0.0037395 -0.0048461 -0.0030475 0 -0.0022168 -0.0042929 0.061222 -0.0085766 -0.0092765 -0.0008316 -0.0082657 0.0015255 -0.30204 -0.00039991 -0.034942 -0.0062286 -0.075795 -0.00039923 -0.0018014 -0.0015992 -0.0013858 -0.0019514 -0.019589 0.0030945 -0.059527 -0.0064761 -0.0033243 -0.0027052 0 0.0027745 -0.0030475 0.0036964 -0.021306 -0.0034627 -0.00013862 0.00083195 -0.97876 -0.0018266 -0.0081034 -0.008237 0 -0.00027724 0.001803 0.00041593 0.0022285 0.0013868 -0.00017546 -0.0034813 0.0046332 -0.0027707 -0.0016629 -0.0051227 0.0022193 -0.0012473 -0.00027724 0.0016642 0 -0.00013862 -0.0012473 -0.0019399 0.00087336 0 -0.001883 -0.018014 0.004719 -0.0022427 0.0012884 -0.010508 0.0011093 0.0034687 0.0003238 0.0022193 -0.0015243 Deletion Peak 6 - CN values 12p13.2 chr12:11415451-13714180(probes 1056214:1057756) chr12:12467955-13370862(probes 1056977:1057364) chr12:10472014-16038555(probes 1055819:1059131) 0.0023827 0.0024153 Actual Copy Change Given 0.0044411 -0.00013862 -0.00055444 0.0033299 0.0037465 0 0.00083195 0.015028 0.0023581 0.0073609 -0.88519 -0.0022168 0.00458 0.0038854 0.0015255 0.0071154 0 -0.016292 0.0013868 0 0.0114 -0.0004889 0.0017266 0.008892 -0.0029091 0.0085203 0.0044269 0 0 0.0030522 0.0022642 0 0.00055459 0.008892 0.012097 0.0023581 0.023066 -0.0014976 -0.00041585 0.0093098 0.00083195 0.00041593 -0.0012473 -0.0022607 -0.0034627 0.0051359 0.0034687 0.006109 -1.0424 -0.0029091 -0.70926 0.0024595 0 0.012795 0.0023581 0.0033299 0.0068044 0.0098669 -0.0037395 0.0043021 0.0049969 -0.011607 0.00069327 0.0027745 0.00069327 0.0024969 0.0041632 0.027216 0.0017534 -0.0016629 0.011106 0.00041262 0.00045676 -0.0041546 -0.0011087 -0.023703 -0.00055444 -0.83486 0.0051988 0 0 0.0030288 0 0.00458 0 0.00041593 0 -0.0009458 -0.0018014 0.018653 -0.89408 0.0026357 0.017825 0.00041593 -0.017893 -0.00042559 -0.0023553 -0.0015243 0.010214 0.0011093 0.00458 0.003191 0.033549 0.011818 0.0019418 -0.0020784 0.00097064 0.0011093 0.0023581 -0.91507 0.0072217 0.00097064 0.003191 -9.838e-05 0.0049641 0.0023581 0.0026357 0.01433 -0.77175 0.001803 0.00055459 0.00083195 -0.0019399 -0.0018014 0.014609 0.0091705 -8.0716e-05 -0.0031859 0.0090312 -0.0012473 -0.29402 0.0022353 -0.016704 0.0094491 0.01372 -0.45189 0.0090312 0.0079815 0 -0.0023668 -0.88666 0.0015678 -0.039937 0.10016 0.03369 0.0014687 0.00458 -0.0027707 -0.00041585 -0.0024053 0.0068044 0.010146 -0.0019399 0.00041593 0.0065513 -0.0021702 0.002411 0.00069327 -0.0043809 0.0062481 -0.0044312 0.0055529 0.0035619 -0.002783 -0.0024938 0.0020183 0.0017174 0.0016642 0.0016642 0.0038854 0.00097064 0.010424 -0.0013715 -0.0029091 0.0070826 0.0027745 0.001803 0.00055459 0 0.0011093 0.0013605 0.0083351 0.00083195 0.0036076 0.00041593 -0.0018014 0.0026357 -0.0023553 0.0022193 0.0015801 0.0016642 Deletion Peak 7 - CN values 12q21.33 chr12:88430194-96043393(probes 1098342:1103211) chr12:91356041-91414107(probes 1100035:1100049) chr12:91366598-91370424(probes 1100043:1100044) 0.097556 0.09527 Actual Copy Change Given -0.026441 0.0052749 -0.00055444 0.0033299 -0.0048937 0 0.00083195 -0.0019411 0.0023581 -0.00069303 0.0062237 -0.0038211 0.00458 0.0038854 0.0015255 0.00073976 0 -0.016292 0.0013868 0 -0.0034489 0.0031227 0.0017266 0.008892 -0.0029091 -0.00050866 -0.0033385 -0.0044312 0 0.0029133 0.0098669 0 -0.0048317 0.008892 -0.0085214 0.0023581 -0.0052008 0.0012481 -0.00041585 -0.0023553 0.00083195 0.00041593 -0.0012473 -0.0022607 -0.0034627 -0.0032644 0.00032903 0.0095883 -0.0080244 -0.0029091 0.010174 0.0024595 0 0.012795 0.0023581 0.0033299 0.0068044 0.000202 -0.0047079 0.003452 0.0049969 -0.011607 0.00069327 0.0027745 0.00069327 0.0024969 0.0041632 -0.014228 0.0017534 -0.0016629 0.0027593 -0.00043579 0.00045676 -0.0041546 -0.0011087 -0.023703 -0.00055444 -0.84635 -0.0055375 0 0 -0.0028759 0 0.00458 0 0.00041593 0 -0.0009458 -0.0018014 0.011391 -0.0066175 0.0026357 -0.012369 0.00041593 -0.0037395 -0.0040259 -0.0023553 -0.0015243 0.010214 0.0011093 0.00458 0.003191 -0.017792 0 -0.0019004 -0.0020784 -0.0012056 -0.0086998 0.0023581 0.017544 0.0022731 0.00097064 0.003191 -9.838e-05 0.00045694 0.0023581 -0.0083005 -0.0060358 -0.0016629 0.001803 -0.0013858 0.00083195 -0.0019399 -0.0018014 0.014609 0.002658 -8.0716e-05 -0.0086403 -1.0474 -0.0012473 -0.29402 -0.0049638 -0.016704 0.0018523 0.034727 0.0015421 0.00016812 -0.0050593 0 -0.0023668 -0.0089906 -0.0027285 0.0093098 0.098947 0.0060452 0.0014687 -0.0037102 -0.0027707 -0.00041585 -0.0024053 0.0068044 0.0013751 -0.0019399 0.00041593 -0.0023173 -0.00041585 -0.0040162 0.00069327 -0.0038275 -0.0078863 -0.005814 -0.00097017 -0.0079317 -0.0050025 -0.0024938 0.0020183 0.0017174 0.0016642 0.0016642 -0.0024938 0.0022193 0.010424 -0.0022168 -0.0029091 0.0070826 0.0027745 0.001803 0.00055459 0 0.0011093 0.0013605 -0.014228 0.00083195 0.0036076 -0.0036011 -0.0018014 -0.003595 -0.0023553 -0.0022168 0.0015801 0.0016642 Deletion Peak 8 - CN values 16q23.1 chr16:66750041-90354753(probes 1300792:1314314) chr16:78015651-78104020(probes 1306769:1306786) chr16:66883120-90354753(probes 1300848:1314314) 0.0010312 0.00096181 Actual Copy Change Given 0.006109 -0.0020784 -0.0060904 0.0068044 -0.014818 -0.010094 -0.0042301 -0.056926 -0.0071958 0.0051359 -0.91597 0.0016642 -0.0063668 -0.0015243 -0.01106 -0.00013862 -0.0053992 -0.047395 -0.0083005 0.0025131 0.00083195 -0.019314 -0.020412 0.00055459 -0.0048461 -0.0077026 -0.8209 -0.0036011 0.00027728 -0.0036011 -0.01037 -0.023977 -0.0008316 -0.01409 -0.86994 0.0049969 -0.0085165 -0.011611 -0.0045695 -0.0053992 -0.0030475 -0.008006 0.00090274 0.017639 -0.0011087 -0.0077482 -0.93275 -0.01037 0.0012481 -0.012851 -0.10211 -0.0055747 -0.0051227 -0.0071958 -0.0099565 0.0015255 -0.0037395 -0.00041585 -0.006505 -0.0073339 -0.0049844 -0.035308 -0.005261 -0.0091286 -0.0031859 0 0.00027728 -0.016106 -0.0028202 0.0055529 -1.0458 0.0033099 -0.011019 -0.00013862 -0.0080244 0.027216 0 -0.038986 -0.0045808 -0.015329 -0.0022168 -0.0027707 -0.011473 -0.012082 -0.0042929 -0.0089906 -0.0045695 -0.0015 -0.0013858 0.0059605 0.0059957 -0.011473 -0.025208 0 -0.03054 -0.0031957 -0.0016629 -0.0016629 -0.044551 -0.0076101 -0.0045695 0.0037465 0.0065262 -0.0094046 0.0033299 0.015866 -0.0044312 -0.025072 -0.0041546 -0.036401 0.00069327 -0.0045695 -0.0063668 -0.0034627 -0.014123 0.0011093 -0.0069195 -0.0053965 -0.0041546 -0.0034627 -0.0057524 -0.0036985 0.0040243 0.00013863 -0.024251 -0.006099 -0.0050419 -0.014503 -0.035993 -0.0089583 -0.30275 0.0040403 -0.082934 -0.012024 -0.10597 -0.0024772 -0.0040162 -0.013889 -0.0076101 -0.003751 -0.049965 -1.1009 -0.035448 -0.0030475 -0.0059522 -0.0019285 -0.0037395 -0.00097017 0.0072217 0.00050455 -0.016154 -0.0092666 -0.037354 -0.0015243 0.0061341 -0.0011087 -0.0018014 -0.0059429 0.0010211 -0.0069195 0.006109 -0.012162 -0.012345 0.0023581 -0.0023553 -0.0040783 -0.0076953 0.0052749 0.0016308 0.00041593 0.0022193 0.004719 -0.0011087 -0.0040162 0.0015255 -0.00055444 -0.0098185 -0.0096122 -0.00097017 -0.011473 -0.0044225 -0.012713 -0.0022168 0.0063871 -0.0022168 -0.016429 -0.0063668 -0.014228 -0.0031859 -0.0024938 0.00041593 Deletion Peak 9 - CN values 17p13.2 chr17:1-7744654(probes 1314315:1317497) chr17:3612763-3708033(probes 1315435:1315489) chr17:3656367-3663578(probes 1315463:1315464) 0.12511 0.11895 Actual Copy Change Given 0.049256 -0.0019399 -0.0015243 0.013632 -0.011473 -0.0056757 -0.0016629 -0.014228 -0.0070576 0.0097276 -0.42429 0.0069435 -0.012851 -0.0018014 -0.0047079 0.003191 -0.0062286 -0.063435 0.010006 0.016721 0.010146 -0.0062286 -0.0087146 0.0022193 -0.00097017 0.004348 -0.026181 -0.0088526 0.00458 -0.0024938 -0.010232 -0.016017 0.00097064 -0.011744 -0.83001 0.0013868 -0.0079642 -0.0019579 -0.0015243 -0.0047079 0.0038854 0.0040243 0.0026357 -0.84029 -0.0033243 -0.010922 0.0011093 -0.00013862 -0.95832 -0.007472 -0.73205 -0.00045319 -0.0018014 -0.49465 0.0081959 0.00069327 0.029325 0.016565 0.0013868 0.0044411 -0.0040162 -0.62293 -0.0070576 -0.013402 -0.0036011 0.0062481 -0.0055375 -0.0092666 -0.010006 -0.0084265 -0.018505 -0.0065249 -0.024073 -0.00041585 -0.012438 -0.0073339 0.0016872 -0.064374 -0.0087146 -0.018765 -0.00041585 0 -0.0066432 -0.007472 -0.011611 -0.012851 -0.007472 -0.007571 -0.0060904 0.0035982 0.0061348 -0.0094046 -0.00055333 -0.0040162 -0.87401 0.0031813 -0.013127 -0.0024938 -0.65696 -0.011749 -0.0088526 -0.00069303 0.00013863 0.015836 -0.0083005 0.0079175 0.00597 -0.77358 -0.0041546 -0.028081 -0.0031859 -0.0076101 -0.0087146 -0.0024938 -0.019615 0 -0.026885 -0.019177 -0.022332 -0.0089906 -0.0023553 0.0091705 -0.75487 -0.0019399 -0.47342 -0.0084385 -0.012105 -0.69658 -0.019314 -0.01849 -0.32106 0.00043188 -0.099341 -0.014778 -0.039925 -0.0045459 0.0051359 -0.017878 -0.0095426 -0.02872 -0.067726 -0.0013436 -0.15362 -0.03885 -0.025209 -0.010221 -0.0040162 -0.0042929 -0.0099565 -0.0058639 -0.0047079 -0.0042929 -0.017116 -0.012162 -0.0042679 0.00027728 -0.0081624 0.0068044 -0.0097683 -0.014503 -0.0031859 -0.01106 -0.009726 -0.00041585 -0.00027724 -0.0071196 -0.0053463 -0.0019856 0.0073609 -0.011335 -0.0069195 -0.0051227 -0.0022168 -0.00041585 0.0055529 0.0044411 -0.0048461 -0.0099565 -0.0084385 -0.011473 0.00070203 -0.0051227 -0.0013858 0.0068044 -0.0080244 -0.0094046 0.0058309 -0.0038779 -0.01316 -0.00097017 0.00097064 Deletion Peak 10 - CN values 17q11.2 chr17:28936804-29722618(probes 1325486:1325709) chr17:29597078-29651479(probes 1325660:1325681) chr17:28811301-30298853(probes 1325423:1326008) 0.0003238 0.0003238 Actual Copy Change Given 0.019124 -0.0019399 -0.0015243 0.013632 -0.011473 -0.0056757 -0.0016629 -0.014228 -0.0070576 -0.0008316 -0.42429 0.0069435 -0.00027724 -0.0018014 -0.0047079 0.003191 -0.0062286 -0.84307 0.010006 0.016721 0.010146 -0.0063668 -0.0087146 0.0022193 -0.00097017 0.001263 -0.026181 -0.0088526 0.00458 -0.0024938 -0.010232 -0.016017 0.00097064 -0.0076101 -0.0049844 0.0013868 -0.0079642 -0.0019579 -0.0015243 -0.0047079 0.0038854 0.0040243 0.0026357 0.83877 -0.0033243 -0.010922 0.0011093 -0.00013862 -0.97274 -0.007472 -0.063435 -0.00045319 -0.0018014 -0.49465 0.0081959 0.00069327 0.029325 0.016565 0.0013868 0.0044411 -0.0040162 -0.047526 -0.0070576 -0.013402 -0.0041239 -0.0088526 -0.0055375 -0.0092666 -0.010006 -0.00055444 -0.018505 -0.0065249 -0.024073 -0.00041585 -0.012438 -0.0073339 0.010285 -0.064374 -0.0087146 -0.018765 -0.00041585 -0.0022168 -0.0066432 -0.007472 -0.011611 -0.012851 -0.007472 0.0013526 -0.0060904 0.018784 0.0061348 -0.0094046 -0.00055333 -0.0040162 -0.045093 -0.0015593 -0.013127 -0.0024938 -0.65696 -0.011749 -0.0088526 -0.00069303 0.00013863 0.015836 -0.0083005 0.0079175 -0.013815 0.64671 -0.0065868 -0.92733 -0.0031859 -0.0076101 -0.0087146 -0.0024938 -0.019615 0 -0.015732 -0.019177 -0.022332 -0.0089906 -0.0023553 -0.0048435 0.68757 -0.0019399 -0.47342 -0.0084385 -0.012105 -0.029038 -0.019314 -0.01849 -0.30475 0.00043188 -0.55246 -0.014778 -0.039925 -0.0045459 0.0051359 -0.01082 -0.0095426 -0.011071 -0.51404 -0.36427 -0.15362 -0.03885 -0.0098185 -0.010221 -0.0040162 -0.0042929 -0.0099565 -0.0058639 -0.0047079 -0.0042929 -0.015315 -0.012162 -0.0042679 0.00027728 -0.0081624 -0.016429 -0.0097683 -0.014503 -0.0031859 -0.01106 -0.009726 -0.00041585 -0.00027724 -0.0071196 -0.0053463 -0.0019856 -0.003425 -0.011335 -0.0069195 -0.0051227 -0.0022168 -0.00041585 0.0055529 0.0044411 -0.0055375 -0.0099565 -0.0084385 -0.011473 0.00070203 -0.013402 -0.0013858 0.0068044 -0.0080244 -0.0094046 0.0048579 -0.0038779 -0.94613 -0.00097017 0.00097064 Deletion Peak 11 - CN values 18p11.21 chr18:12273033-13664017(probes 1358058:1358876) chr18:12531263-12728656(probes 1358195:1358260) chr18:12408935-13617286(probes 1358125:1358849) 0.020884 0.022472 Actual Copy Change Given 0.0038854 0.0052749 0.0051359 0.0012481 0.0087528 0 0.0038854 0.003448 0.0055607 0.0084743 -0.83494 0.0012481 -0.0054196 0.011988 0.0015255 0.0072217 -0.0041546 -0.014366 0 0.00070948 0.0015255 -0.00013862 0.010982 -0.0022168 0.00013863 -0.0017556 -0.747 0.0024969 0.0016892 -0.0020784 -0.00064809 0.0049969 0.0026357 0.0054139 -0.0013858 0.0049969 -0.0013255 0.0019418 -0.0023553 0.0037465 0.00069327 0.0027745 0.0044411 0.0034248 0.0043021 0.0016642 0.00027728 -0.0016629 0.026935 0.011121 -0.7219 0.0016269 0.0029133 -0.50027 -0.0037395 -0.0015243 -0.0083005 -0.0053992 -0.0059522 0.0058309 0.0040243 -0.011469 0.010424 0.00097064 -0.00055444 0.003191 0.0043021 0.020903 0.0016147 0.0052749 -0.0079014 0.0026157 0.022486 0.005237 0.0052749 0 0.010982 -0.83849 0.0035088 -0.0008316 0.0027745 -0.0012473 -0.03395 0.013962 0.0034687 0 0.001803 0.0098915 0.0053817 -0.0051388 0.004189 0.0033299 -0.002908 0.0065262 -0.86129 0.0045378 0.0052749 0.0054139 -0.012989 0.0048579 0.017544 0.0075 0.01433 0.0033299 -0.0049844 -0.0011087 0.0068044 0.01419 0.004719 -0.91537 -0.92159 0.0044411 0.0041632 0.00597 0.0026029 0.0069435 0 0.0017834 0.0081959 0.003191 0.0077783 0.0095883 0.010146 0.0073609 -0.30251 -0.00013862 0.0011673 -0.058596 -0.0095426 -0.00041585 0.036088 0.0040403 -0.01424 0.0037465 -0.027623 0.0040409 0.0087528 0.0020056 0.0040243 0.001514 -0.0070576 0.0033722 -0.038714 0.027919 0.00097064 0.0059814 -0.0019399 0.00094618 0.0019418 -0.0023211 0.0041632 0.0063871 0.0079175 0.00013863 0.0015506 0.00097064 0.0038854 0.0054139 0.011123 0.0049969 0.00597 -0.0012157 0.0092639 0.0081959 0.0015255 0.0057686 -0.00077856 0.001803 0.0043021 0.0011223 -0.00013862 0.00069327 0.003191 0.0026357 0.0058309 0.003191 0.0022193 0.0034687 0.0069435 -0.0019399 0 0.0098669 0.0040243 -0.00013862 -0.00041585 0.0024969 -0.0066432 -0.005261 -0.0016629 0.0033299 0.0054139 Deletion Peak 12 - CN values 20q13.13 chr20:30824328-55265903(probes 1434301:1449623) chr20:49116791-49210155(probes 1445248:1445412) chr20:49154555-49155103(probes 1445331:1445332) 0.14746 0.15019 Actual Copy Change Given 0.010982 -0.0055375 0.0049969 -0.0002721 -0.022154 -0.005814 0.0011093 -0.02151 0.00083195 -0.00097017 -0.027535 0.0070826 -0.0050864 -0.0018014 -0.005814 -0.0031859 0.0012481 -0.068395 -0.0027707 -0.0038617 -0.0030475 -0.0048461 0.0029133 0.0024969 -0.0022168 0.0015713 -0.74743 -0.010508 0.00055459 -0.00041585 0.010383 0.00458 0.00027728 0.00458 -0.022469 -0.011335 0.0020022 -0.0063183 0.003191 -0.0008316 0.00069327 0.0038854 -0.0033243 0.023802 -0.0037395 -0.0027707 -0.0015243 -0.002523 0.031155 -0.0011331 0.0048579 -0.0065422 0.0026357 -0.022606 0.0065262 -0.0051227 -0.010922 -0.0036011 0.0041632 0 -0.011749 -0.61277 -0.00041585 -0.0123 0.0016642 0.010006 0.0012481 -0.04983 -0.0064162 -0.00041585 -0.024813 -0.0058339 -0.011019 -0.0019399 -0.0088526 0.036069 -0.0015243 -0.050235 -0.0019399 -0.017391 0.00055459 -0.0083005 -0.011473 0.0020373 0.0058309 -0.008964 -0.0031859 -0.0030232 -0.0022168 0.0026263 0.011844 0.0038854 -0.013401 -0.0047797 -0.066922 -0.0033341 0.0026357 -0.00027724 -0.045499 -0.0067813 0.0024777 -0.0016653 -0.00092679 -0.0082758 0.001803 -0.96078 -0.011304 -0.021647 -0.010508 -0.033541 0.001803 -0.00041585 -0.0051227 0.0038854 0.0017703 0.0081959 -0.014228 -0.013677 -0.0059522 0 -0.0018014 0.0029133 -0.0034627 -0.0033243 -0.016154 -0.003025 -0.00063513 -0.66217 -0.021098 -0.0015243 -0.026012 -0.00081567 -0.077797 -0.010094 -0.04834 0.0018196 -0.0018014 0.0011731 -0.0085766 -0.012243 -0.048613 -0.00092793 -0.074144 -0.0092666 0.0066653 -0.0023439 0.0034687 0.00013863 -0.0016709 -0.0037149 0.00083195 -0.011473 -0.011313 -0.00095661 -0.00094515 -0.0016629 0.0027745 -0.0027707 0.013124 -0.0067206 0.00055459 -0.0011087 0.003423 0.0040243 0.00013863 -0.0010323 0.01229 0.0012481 -0.0011087 -0.00027724 -0.0012473 0.0029133 -0.0016629 0.0013868 -0.0066432 -0.0034627 -0.0059522 -0.012184 -0.00055444 -0.0092666 -0.0049125 -0.025893 -0.0019399 0.010977 -0.0011087 -0.0062286 -0.012713 0.0015255 -0.0012473 0.00083195 0.0015255