Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold TCGA-2J-AAB1-01A-11D-A40V-01 TCGA-2J-AAB4-01A-12D-A40V-01 TCGA-2J-AAB6-01A-11D-A40V-01 TCGA-2J-AAB8-01A-12D-A40V-01 TCGA-2J-AAB9-01A-11D-A40V-01 TCGA-2J-AABA-01A-21D-A40V-01 TCGA-2J-AABE-01A-12D-A40V-01 TCGA-2J-AABF-01A-31D-A40V-01 TCGA-2J-AABH-01A-21D-A40V-01 TCGA-2J-AABI-01A-12D-A40V-01 TCGA-2J-AABK-01A-31D-A40V-01 TCGA-2J-AABO-01A-21D-A40V-01 TCGA-2J-AABP-01A-11D-A40V-01 TCGA-2J-AABR-01A-11D-A40V-01 TCGA-2J-AABT-01A-11D-A40V-01 TCGA-2J-AABU-01A-11D-A40V-01 TCGA-2J-AABV-01A-12D-A40V-01 TCGA-2L-AAQA-01A-21D-A38F-01 TCGA-2L-AAQE-01A-11D-A396-01 TCGA-2L-AAQI-01A-12D-A396-01 TCGA-2L-AAQJ-01A-12D-A396-01 TCGA-2L-AAQL-01A-11D-A38F-01 TCGA-2L-AAQM-01A-11D-A396-01 TCGA-3A-A9I5-01A-11D-A38F-01 TCGA-3A-A9I7-01A-21D-A38F-01 TCGA-3A-A9I9-01A-11D-A38F-01 TCGA-3A-A9IB-01A-21D-A396-01 TCGA-3A-A9IC-01A-11D-A38F-01 TCGA-3A-A9IH-01A-12D-A396-01 TCGA-3A-A9IJ-01A-11D-A396-01 TCGA-3A-A9IL-01A-11D-A38F-01 TCGA-3A-A9IN-01A-11D-A396-01 TCGA-3A-A9IO-01A-11D-A38F-01 TCGA-3A-A9IR-01A-11D-A38F-01 TCGA-3A-A9IS-01A-21D-A396-01 TCGA-3A-A9IU-01A-11D-A396-01 TCGA-3A-A9IV-01A-11D-A40V-01 TCGA-3A-A9IX-01A-11D-A40V-01 TCGA-3A-A9IZ-01A-12D-A40V-01 TCGA-3A-A9J0-01A-11D-A40V-01 TCGA-3E-AAAY-01A-11D-A38F-01 TCGA-3E-AAAZ-01A-11D-A38F-01 TCGA-F2-6879-01A-11D-2153-01 TCGA-F2-6880-01A-11D-2153-01 TCGA-F2-7273-01A-11D-2153-01 TCGA-F2-7276-01A-11D-2153-01 TCGA-F2-A44G-01A-11D-A26H-01 TCGA-F2-A44H-01A-11D-A26H-01 TCGA-F2-A7TX-01A-33D-A38F-01 TCGA-F2-A8YN-01A-11D-A376-01 TCGA-FB-A4P5-01A-11D-A26H-01 TCGA-FB-A545-01A-11D-A26H-01 TCGA-FB-A5VM-01A-11D-A32M-01 TCGA-FB-A78T-01A-12D-A32M-01 TCGA-FB-A7DR-01A-21D-A33S-01 TCGA-FB-AAPP-01A-12D-A40V-01 TCGA-FB-AAPQ-01A-11D-A40V-01 TCGA-FB-AAPS-01A-12D-A396-01 TCGA-FB-AAPU-01A-31D-A40V-01 TCGA-FB-AAPY-01A-11D-A40V-01 TCGA-FB-AAPZ-01A-11D-A40V-01 TCGA-FB-AAQ0-01A-31D-A40V-01 TCGA-FB-AAQ1-01A-12D-A40V-01 TCGA-FB-AAQ2-01A-31D-A40V-01 TCGA-FB-AAQ3-01A-11D-A40V-01 TCGA-FB-AAQ6-01A-11D-A40V-01 TCGA-FZ-5919-01A-11D-1608-01 TCGA-FZ-5920-01A-11D-1608-01 TCGA-FZ-5921-01A-11D-1608-01 TCGA-FZ-5922-01A-11D-1608-01 TCGA-FZ-5923-01A-12D-1608-01 TCGA-FZ-5924-01A-13D-1608-01 TCGA-FZ-5926-01A-11D-1608-01 TCGA-H6-8124-01A-11D-2392-01 TCGA-H6-A45N-01A-11D-A26H-01 TCGA-H8-A6C1-01A-11D-A32M-01 TCGA-HV-A5A3-01A-11D-A26H-01 TCGA-HV-A5A4-01A-11D-A26H-01 TCGA-HV-A5A5-01A-11D-A26H-01 TCGA-HV-A5A6-01A-11D-A26H-01 TCGA-HV-A7OL-01A-11D-A33S-01 TCGA-HV-A7OP-01A-11D-A33S-01 TCGA-HV-AA8V-01A-11D-A40V-01 TCGA-HV-AA8X-01A-11D-A396-01 TCGA-HZ-7289-01A-11D-2153-01 TCGA-HZ-7918-01A-11D-2153-01 TCGA-HZ-7919-01A-11D-2153-01 TCGA-HZ-7920-01A-11D-2200-01 TCGA-HZ-7922-01A-11D-2153-01 TCGA-HZ-7923-01A-12D-2153-01 TCGA-HZ-7924-01A-11D-2153-01 TCGA-HZ-7925-01A-11D-2153-01 TCGA-HZ-7926-01A-11D-2153-01 TCGA-HZ-8001-01A-11D-2200-01 TCGA-HZ-8002-01A-11D-2200-01 TCGA-HZ-8003-01A-21D-2200-01 TCGA-HZ-8005-01A-11D-2200-01 TCGA-HZ-8315-01A-11D-2392-01 TCGA-HZ-8317-01A-11D-2392-01 TCGA-HZ-8519-01A-11D-2392-01 TCGA-HZ-8636-01A-21D-2392-01 TCGA-HZ-8637-01A-11D-2392-01 TCGA-HZ-8638-01A-11D-2392-01 TCGA-HZ-A49G-01A-11D-A26H-01 TCGA-HZ-A49H-01A-11D-A26H-01 TCGA-HZ-A49I-01A-12D-A26H-01 TCGA-HZ-A4BH-01A-11D-A26H-01 TCGA-HZ-A4BK-01A-11D-A26H-01 TCGA-HZ-A77O-01A-11D-A33S-01 TCGA-HZ-A77P-01A-11D-A33S-01 TCGA-HZ-A77Q-01A-11D-A36N-01 TCGA-HZ-A8P0-01A-11D-A36N-01 TCGA-HZ-A8P1-01A-11D-A376-01 TCGA-HZ-A9TJ-01A-11D-A40V-01 TCGA-IB-7644-01A-11D-2153-01 TCGA-IB-7645-01A-22D-2200-01 TCGA-IB-7646-01A-11D-2153-01 TCGA-IB-7647-01A-11D-2153-01 TCGA-IB-7649-01A-11D-2153-01 TCGA-IB-7651-01A-11D-2153-01 TCGA-IB-7652-01A-11D-2153-01 TCGA-IB-7654-01A-11D-2153-01 TCGA-IB-7885-01A-11D-2153-01 TCGA-IB-7886-01A-11D-2153-01 TCGA-IB-7887-01A-11D-2153-01 TCGA-IB-7888-01A-11D-2153-01 TCGA-IB-7889-01A-11D-2153-01 TCGA-IB-7890-01A-12D-2200-01 TCGA-IB-7891-01A-11D-2200-01 TCGA-IB-7893-01A-11D-2200-01 TCGA-IB-7897-01A-21D-2200-01 TCGA-IB-8126-01A-11D-2392-01 TCGA-IB-8127-01A-11D-2392-01 TCGA-IB-A5SO-01A-11D-A32M-01 TCGA-IB-A5SP-01A-11D-A32M-01 TCGA-IB-A5SQ-01A-11D-A32M-01 TCGA-IB-A5SS-01A-11D-A32M-01 TCGA-IB-A5ST-01A-11D-A32M-01 TCGA-IB-A6UF-01A-23D-A33S-01 TCGA-IB-A6UG-01A-32D-A33S-01 TCGA-IB-A7LX-01A-12D-A36N-01 TCGA-IB-A7M4-01A-11D-A36N-01 TCGA-IB-AAUM-01A-11D-A376-01 TCGA-IB-AAUN-01A-12D-A38F-01 TCGA-IB-AAUO-01A-12D-A38F-01 TCGA-IB-AAUP-01A-11D-A376-01 TCGA-IB-AAUQ-01A-22D-A40V-01 TCGA-IB-AAUR-01A-21D-A38F-01 TCGA-IB-AAUS-01A-12D-A38F-01 TCGA-IB-AAUT-01A-11D-A376-01 TCGA-IB-AAUU-01A-11D-A376-01 TCGA-IB-AAUV-01A-11D-A38F-01 TCGA-IB-AAUW-01A-12D-A38F-01 TCGA-L1-A7W4-01A-12D-A36N-01 TCGA-LB-A7SX-01A-11D-A33S-01 TCGA-LB-A8F3-01A-11D-A36N-01 TCGA-LB-A9Q5-01A-11D-A396-01 TCGA-M8-A5N4-01A-11D-A26H-01 TCGA-OE-A75W-01A-12D-A32M-01 TCGA-PZ-A5RE-01A-11D-A32M-01 TCGA-Q3-A5QY-01A-12D-A32M-01 TCGA-Q3-AA2A-01A-11D-A376-01 TCGA-RB-A7B8-01A-12D-A33S-01 TCGA-RB-AA9M-01A-11D-A396-01 TCGA-RL-AAAS-01A-32D-A396-01 TCGA-S4-A8RM-01A-11D-A376-01 TCGA-S4-A8RO-01A-12D-A376-01 TCGA-S4-A8RP-01A-11D-A36N-01 TCGA-US-A774-01A-21D-A32M-01 TCGA-US-A776-01A-13D-A33S-01 TCGA-US-A779-01A-11D-A32M-01 TCGA-US-A77E-01A-11D-A32M-01 TCGA-US-A77G-01A-11D-A32M-01 TCGA-US-A77J-01A-11D-A32M-01 TCGA-XD-AAUG-01A-61D-A40V-01 TCGA-XD-AAUH-01A-42D-A40V-01 TCGA-XD-AAUI-01A-42D-A40V-01 TCGA-XD-AAUL-01A-21D-A396-01 TCGA-XN-A8T3-01A-11D-A36N-01 TCGA-XN-A8T5-01A-12D-A36N-01 TCGA-YB-A89D-01A-12D-A36N-01 TCGA-YH-A8SY-01A-11D-A376-01 TCGA-YY-A8LH-01A-11D-A36N-01 TCGA-Z5-AAPL-01A-12D-A40V-01 Amplification Peak 1 1p34.2 chr1:37413199-44557362(probes 17850:21842) chr1:41154814-42223908(probes 19783:20418) chr1:41154814-42227600(probes 19783:20421) 0.22288 0.22288 0: t<0.1; 1: 0.10.9 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 2 1p12 chr1:120204209-120523901(probes 67341:67531) chr1:120456564-120522600(probes 67489:67530) chr1:116113603-149885582(probes 64791:67537) 6.2379e-05 0.00011281 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 2 0 0 2 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 3 1q21.3 chr1:120521654-200300051(probes 67530:98200) chr1:154492002-154833396(probes 69647:69886) chr1:154492002-155688579(probes 69647:70222) 0.085665 0.2011 0: t<0.1; 1: 0.10.9 0 0 2 1 0 0 1 1 1 1 1 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 2 0 2 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 1 1 1 1 0 0 2 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 Amplification Peak 4 2q36.2 chr2:168562888-243199373(probes 217063:259419) chr2:225226123-225560218(probes 249357:249555) chr2:225053425-225893048(probes 249246:249790) 0.1091 0.1091 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 Amplification Peak 5 3p12.2 chr3:82198839-82960457(probes 306274:306689) chr3:82687134-82762059(probes 306548:306584) chr3:82687134-82768701(probes 306548:306587) 0.20695 0.20695 0: t<0.1; 1: 0.10.9 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 6 3q26.2 chr3:148386857-198022430(probes 340107:365381) chr3:169231353-169774820(probes 350887:351227) chr3:169231353-170319954(probes 350887:351511) 0.16151 0.16151 0: t<0.1; 1: 0.10.9 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 7 4p16.3 chr4:1-2148628(probes 365382:365731) chr4:1648453-1861569(probes 365535:365631) chr4:1-2155153(probes 365382:365733) 0.037752 0.037752 0: t<0.1; 1: 0.10.9 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 Amplification Peak 8 6p21.31 chr6:34073534-34891140(probes 587390:587703) chr6:34074464-34267035(probes 587391:587462) chr6:34074464-34461157(probes 587391:587551) 0.098493 0.098493 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 Amplification Peak 9 7q22.1 chr7:97568629-99200083(probes 713121:713769) chr7:98406354-98969281(probes 713520:713703) chr7:97524031-100613356(probes 713118:714246) 0.0002473 0.0002473 0: t<0.1; 1: 0.10.9 1 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 2 0 1 1 0 0 0 1 1 2 1 0 0 0 2 0 2 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 1 0 1 1 1 0 0 0 1 0 1 0 1 0 0 2 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 2 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 1 0 2 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 Amplification Peak 10 8p11.22 chr8:37097564-38558525(probes 765978:766657) chr8:38382938-38525002(probes 766575:766636) chr8:37101004-38559325(probes 765979:766659) 0.021017 0.030971 0: t<0.1; 1: 0.10.9 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 Amplification Peak 11 8p11.21 chr8:39698409-41157238(probes 767134:768152) chr8:40543053-40765716(probes 767770:767925) chr8:40429031-40810929(probes 767706:767942) 0.06475 0.16496 0: t<0.1; 1: 0.10.9 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 Amplification Peak 12 8q24.21 chr8:128671421-128679033(probes 815729:815738) chr8:128673108-128678985(probes 815730:815737) chr8:113366166-146364022(probes 806016:825684) 3.7872e-13 3.7872e-13 0: t<0.1; 1: 0.10.9 0 1 0 0 0 0 0 1 2 0 0 0 1 0 0 0 0 0 1 1 1 0 0 1 0 0 1 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 1 1 1 0 1 0 0 1 0 2 1 1 2 1 2 0 0 1 0 0 0 1 0 0 1 2 0 0 2 0 0 1 0 1 1 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 1 0 1 1 0 1 0 0 1 1 0 1 0 0 1 0 1 0 1 0 1 1 1 2 0 1 0 0 2 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 2 1 0 1 2 0 0 0 0 0 2 0 1 0 1 1 0 0 Amplification Peak 13 9p13.3 chr9:35244633-35808362(probes 846663:846914) chr9:35671628-35687195(probes 846857:846867) chr9:34542637-36539263(probes 846287:847317) 1.193e-05 1.193e-05 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 Amplification Peak 14 12p13.33 chr12:1-5520802(probes 1050678:1053490) chr12:1-1301400(probes 1050678:1050880) chr12:1-5521559(probes 1050678:1053492) 0.0041088 0.0056247 0: t<0.1; 1: 0.10.9 0 0 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 1 2 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 Amplification Peak 15 12p11.21 chr12:31421842-31442221(probes 1068865:1068872) chr12:31421898-31440450(probes 1068866:1068871) chr12:30846561-32410586(probes 1068552:1069414) 0.0054669 0.0066479 0: t<0.1; 1: 0.10.9 0 0 0 1 0 0 0 1 0 2 0 1 0 0 0 2 0 0 0 0 1 1 2 1 0 0 1 0 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 2 2 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 Amplification Peak 16 12q15 chr12:68307608-71340084(probes 1086390:1088496) chr12:70509939-70526823(probes 1087975:1087980) chr12:68310485-71558447(probes 1086391:1088652) 0.0061805 0.0061805 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 1 0 1 2 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 1 1 2 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 17 15q26.1 chr15:54962553-102531392(probes 1246087:1273810) chr15:90706721-90953647(probes 1267032:1267119) chr15:90706721-90958255(probes 1267032:1267122) 0.20695 0.20695 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 18 17p11.2 chr17:19277362-19597719(probes 1323117:1323276) chr17:19468013-19543197(probes 1323222:1323230) chr17:19279467-19604615(probes 1323118:1323278) 0.053033 0.053033 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 19 17q12 chr17:37726424-37951087(probes 1329352:1329473) chr17:37726766-37948873(probes 1329353:1329472) chr17:37046872-38391008(probes 1329046:1329639) 0.0010909 0.0010909 0: t<0.1; 1: 0.10.9 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 2 0 0 1 2 2 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 Amplification Peak 20 18q11.2 chr18:19704037-19953596(probes 1359622:1359770) chr18:19826743-19864659(probes 1359688:1359716) chr18:14660483-22515075(probes 1359191:1361391) 3.7872e-13 3.7872e-13 0: t<0.1; 1: 0.10.9 0 1 1 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 2 0 1 1 0 0 0 1 2 1 0 0 0 0 0 1 0 2 0 0 2 0 2 0 1 0 2 1 2 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 0 2 2 0 0 0 1 0 0 1 0 2 0 0 0 0 0 1 0 2 1 1 1 0 0 0 0 2 1 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 Amplification Peak 21 19q13.2 chr19:39817101-39931030(probes 1409392:1409429) chr19:39818392-39930887(probes 1409393:1409428) chr19:28277500-41617892(probes 1402313:1410213) 3.1883e-10 3.1883e-10 0: t<0.1; 1: 0.10.9 0 2 2 1 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 2 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 2 0 0 1 0 1 0 2 0 0 1 0 0 0 0 0 2 2 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 1 0 1 0 0 0 Amplification Peak 22 20p11.23 chr20:20117297-24014137(probes 1430239:1432777) chr20:20716844-21115141(probes 1430616:1430921) chr20:20716844-21336306(probes 1430616:1431052) 0.0668 0.0668 0: t<0.1; 1: 0.10.9 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 1 2 0 0 0 0 0 0 0 0 2 1 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 2 0 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 Amplification Peak 23 Xq28 chrX:137796123-155270560(probes 1546542:1553795) chrX:148062378-148067556(probes 1551611:1551616) chrX:148062378-148075694(probes 1551611:1551619) 0.041079 0.041079 0: t<0.1; 1: 0.10.9 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 1 1p36.11 chr1:26795113-27650365(probes 12604:12850) chr1:27101202-27222754(probes 12682:12719) chr1:1-31832772(probes 1:14914) 3.1088e-06 3.1088e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 1 1 1 1 1 0 1 0 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 0 1 1 1 1 1 0 1 0 1 1 1 0 0 0 1 0 1 1 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 1 0 1 0 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 Deletion Peak 2 2q14.3 chr2:1-243199373(probes 128609:259419) chr2:3380900-240337579(probes 129742:258210) chr2:3434287-3436123(probes 129771:129772) 0.2014 0.2014 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 3 3p21.31 chr3:41286244-70019622(probes 282824:299282) chr3:49970625-50148208(probes 286928:286999) chr3:49997558-50169409(probes 286935:287008) 0.030662 0.030598 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 1 1 1 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 Deletion Peak 4 4q22.1 chr4:90844993-93240505(probes 415001:416146) chr4:91035787-92525194(probes 415048:415833) chr4:91747665-91750453(probes 415441:415442) 0.080507 0.080507 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 Deletion Peak 5 4q34.3 chr4:151493422-191154276(probes 447791:467529) chr4:181521852-182082855(probes 464334:464337) chr4:174771787-188461870(probes 460573:467350) 0.027407 0.027407 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 Deletion Peak 6 5q14.2 chr5:66463055-89318315(probes 502956:515009) chr5:82372996-82655821(probes 511481:511631) chr5:50486544-110692711(probes 493561:525502) 0.0001774 0.0001774 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 Deletion Peak 7 6p25.2 chr6:1-19840198(probes 567572:580769) chr6:3151318-3233432(probes 569201:569237) chr6:1-25255276(probes 567572:584570) 0.00010152 0.0020078 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 0 1 0 0 1 1 0 1 1 0 0 1 0 1 1 1 0 0 1 0 0 0 1 1 1 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 1 1 1 0 0 1 1 1 0 0 1 0 1 0 1 1 0 0 1 1 0 1 1 1 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 0 0 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 1 0 Deletion Peak 8 6p22.2 chr6:26187784-26235299(probes 585019:585043) chr6:26217729-26227267(probes 585039:585040) chr6:26125364-26911880(probes 584983:585234) 0.00045039 0.019818 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 0 1 0 0 1 1 0 1 1 0 0 1 0 1 1 1 0 0 1 0 0 0 1 1 1 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 1 0 1 1 1 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 1 1 0 1 0 1 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 1 1 0 Deletion Peak 9 6q25.3 chr6:64344861-171115067(probes 602275:663571) chr6:157096213-157713661(probes 656413:656668) chr6:157289854-157294518(probes 656541:656542) 0.11274 0.10903 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 1 1 0 1 1 0 1 0 0 0 1 0 1 1 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 1 1 0 1 1 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 0 1 0 0 0 1 0 1 1 1 1 1 0 1 0 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 1 1 0 1 0 0 1 0 1 0 1 0 1 1 1 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 0 1 1 1 0 Deletion Peak 10 7q31.1 chr7:87826958-159138663(probes 708294:744561) chr7:110236682-111354928(probes 719426:719705) chr7:110535012-110544716(probes 719566:719567) 0.049388 0.23418 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 Deletion Peak 11 7q36.1 chr7:104644244-159138663(probes 716228:744561) chr7:151755370-151768343(probes 741247:741248) chr7:125775978-159138663(probes 727415:744561) 0.017156 0.10554 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 Deletion Peak 12 8p21.3 chr8:1-37645465(probes 744562:766283) chr8:22203435-22978810(probes 756821:757177) chr8:12570390-25028670(probes 749581:758517) 0.050455 0.050573 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 1 1 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 Deletion Peak 13 9p21.3 chr9:21959052-21977193(probes 839100:839101) chr9:21959052-21977193(probes 839100:839101) chr9:1-31852831(probes 825685:844647) 1.1756e-92 1.1756e-92 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 1 1 1 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 0 1 1 0 1 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 0 1 0 0 1 0 0 0 0 1 1 0 0 1 1 0 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 0 0 1 0 1 0 0 1 0 1 0 1 0 1 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 1 1 0 1 1 1 0 1 1 1 0 1 0 1 0 0 1 1 1 0 0 0 1 1 1 0 0 1 1 0 Deletion Peak 14 10p15.3 chr10:1-30405647(probes 893356:914183) chr10:1-1314217(probes 893356:893586) chr10:1-1314830(probes 893356:893588) 0.169 0.17225 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 Deletion Peak 15 10q23.33 chr10:81244419-135534747(probes 940342:973857) chr10:95324504-95465475(probes 948796:948890) chr10:95326097-95610977(probes 948797:949010) 0.169 0.16716 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 Deletion Peak 16 11p15.4 chr11:1-13933964(probes 973858:982066) chr11:3815537-3847749(probes 974987:975003) chr11:1-8086986(probes 973858:977776) 0.022808 0.022185 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 Deletion Peak 17 12p13.1 chr12:3868507-22220975(probes 1052121:1062868) chr12:13712557-14136957(probes 1057754:1058120) chr12:3977959-22548548(probes 1052176:1063104) 0.0019175 0.0018838 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 18 12q24.33 chr12:72477654-133851895(probes 1089120:1124143) chr12:131436970-131626305(probes 1123520:1123655) chr12:75573001-133851895(probes 1090738:1124143) 0.0030251 0.0030638 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 Deletion Peak 19 14q11.2 chr14:1-107349540(probes 1180431:1229592) chr14:21145056-21676424(probes 1180843:1181099) chr14:21145056-23135762(probes 1180843:1181312) 0.11332 0.11332 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 Deletion Peak 20 15q15.1 chr15:1-89748703(probes 1229593:1266499) chr15:41976794-42493704(probes 1238570:1238857) chr15:41924473-42720100(probes 1238550:1238994) 0.13216 0.13606 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 0 Deletion Peak 21 16q23.1 chr16:78098006-79299841(probes 1306783:1307848) chr16:78129058-79247026(probes 1306814:1307819) chr16:78583258-78586506(probes 1307317:1307318) 0.076448 0.075047 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 Deletion Peak 22 17p12 chr17:11866892-12456081(probes 1320150:1320517) chr17:11921739-12048275(probes 1320174:1320239) chr17:11721359-12366572(probes 1320063:1320462) 0.00086227 0.00089311 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 1 0 1 1 1 1 0 0 1 1 0 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 0 1 1 0 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 1 1 1 1 0 1 0 0 1 1 0 1 0 1 0 1 1 0 1 0 1 1 0 1 1 0 0 1 0 1 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 1 0 Deletion Peak 23 17q22 chr17:55754312-57936913(probes 1338426:1339471) chr17:56426873-56498380(probes 1338842:1338877) chr17:49952859-81195210(probes 1334598:1351023) 1.3088e-08 1.3088e-08 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 1 0 1 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 1 0 Deletion Peak 24 18p11.31 chr18:1-5145388(probes 1351024:1353432) chr18:2916039-3015918(probes 1351943:1352011) chr18:2966841-2972980(probes 1351978:1351979) 0.12313 0.12494 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 Deletion Peak 25 18q21.2 chr18:48491525-48650073(probes 1377432:1377593) chr18:48491525-48616860(probes 1377432:1377587) chr18:35110153-78077248(probes 1369086:1393425) 3.0015e-33 3.0015e-33 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 0 0 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 0 0 1 0 0 1 1 0 0 1 1 1 0 1 0 1 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 0 1 1 0 0 Deletion Peak 26 19p13.3 chr19:1-7112175(probes 1393426:1395320) chr19:1390205-1501357(probes 1393626:1393649) chr19:1-6832100(probes 1393426:1395303) 0.0060878 0.063427 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 Deletion Peak 27 19p13.2 chr19:11040707-11207540(probes 1397049:1397113) chr19:11121185-11126087(probes 1397084:1397086) chr19:11065410-11207540(probes 1397055:1397113) 0.0063465 0.030598 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 Deletion Peak 28 19q13.33 chr19:46475664-59128983(probes 1412108:1417123) chr19:48550848-48627220(probes 1413000:1413051) chr19:47953987-50976533(probes 1412703:1413841) 0.035089 0.035879 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 Deletion Peak 29 21q11.2 chr21:1-34398715(probes 1454142:1466168) chr21:1-15759667(probes 1454142:1454363) chr21:1-17319545(probes 1454142:1455312) 0.10872 0.10903 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 1 0 1 0 0 1 0 0 1 1 0 0 1 1 1 0 1 0 0 1 1 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 1 1 0 1 0 0 1 1 0 1 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 Deletion Peak 30 22q13.31 chr22:43902280-51304566(probes 1487385:1491284) chr22:46535935-46643431(probes 1489208:1489261) chr22:43762358-51304566(probes 1487307:1491284) 0.00017878 0.022185 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 1 0 1 1 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 1 1 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0 1 0 Deletion Peak 31 22q13.32 chr22:43902280-51304566(probes 1487385:1491284) chr22:49330724-51304566(probes 1491284:1491284) chr22:43762358-51304566(probes 1487307:1491284) 0.0001774 0.075047 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 1 0 1 1 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 1 1 1 0 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 1 0 Deletion Peak 32 Xp21.1 chrX:30870233-32611359(probes 1503610:1504576) chrX:30870233-34033668(probes 1503610:1504832) chrX:32057877-32062998(probes 1504222:1504223) 0.079916 0.075047 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 Deletion Peak 33 Xq11.2 chrX:62570171-64136373(probes 1514725:1515336) chrX:63397172-63451875(probes 1515019:1515031) chrX:63013923-63460901(probes 1514883:1515036) 0.19346 0.2014 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 Amplification Peak 1 - CN values 1p34.2 chr1:37413199-44557362(probes 17850:21842) chr1:41154814-42223908(probes 19783:20418) chr1:41154814-42227600(probes 19783:20421) 0.22288 0.22288 Actual Copy Change Given 0.00597 0.050534 0.5149 -0.078544 -0.038442 0.0041632 0 0.14414 -0.48428 -0.67989 -0.096836 -0.14856 0.25015 0 0.012711 -0.0016629 -0.0012473 -0.66513 -0.18017 -0.27737 -0.2793 -0.29402 -0.087844 -0.33063 0.0034345 0.00097064 -0.065791 0.0077783 0.054172 -0.0077482 -0.53899 -0.032996 -0.010646 -0.0095426 -0.59753 0.00088607 -0.027671 0.0017889 -0.0031859 -0.0041546 -0.0035404 -0.37347 0.0063871 -0.00097017 0.023286 0.0048579 0.0016082 -0.088848 -0.0066432 0.017963 0.0031984 -0.030404 -0.044551 -0.24126 -0.13255 -0.27308 -0.47512 0.0013868 0.0040243 0.010941 -0.01904 -0.2154 0.092776 1.368 -0.17954 -0.40315 -0.030677 -0.20709 0.067375 0.0015128 0.14021 -0.46014 0.016425 -0.0051227 0.047694 0.01023 -0.0022442 0.010842 -0.10657 0.0077783 -0.00055444 -0.75668 0.0012481 -0.0051227 3.1287 0.02232 0.020063 0 -0.016292 0.0050519 0 0.11091 -0.044822 -0.030859 -0.0073339 0.0036076 -0.18856 0.0041632 -0.015604 0.029466 -0.046177 0.10462 0 0.024082 0.0068379 -0.0043498 -0.057979 0.0086321 -0.33479 0 0.00069327 0.0080567 -0.71069 0.19847 0.0068044 0.015046 -0.21218 -0.012713 -0.063287 -0.17056 -0.0085766 1.3865 0.012097 -0.24039 -0.0022168 -0.00046499 -0.12108 -0.081202 -0.042381 -0.0097387 0.0027745 -0.027945 -0.23116 -0.0097063 -0.11493 0.038669 -0.44167 0.036886 0.016705 -0.16064 -0.41058 -0.14361 0.10133 -0.52777 0.0086135 -0.012082 -0.023018 -0.0098722 0.015587 0.01433 0.013772 0.00013863 -0.00069303 0.017824 0.097542 -0.25697 0.037287 -0.00055444 -0.53713 0 0.0094491 0.0065262 0.14056 -0.13291 -0.0059959 -0.62941 -0.66578 0 -0.0050286 0.15889 -0.017803 0.013247 0.050923 0.0042129 -0.036674 -0.047298 0.015587 0.0023581 0.033408 -0.002033 0 -0.072887 -0.3943 -0.0072706 Amplification Peak 2 - CN values 1p12 chr1:120204209-120523901(probes 67341:67531) chr1:120456564-120522600(probes 67489:67530) chr1:116113603-149885582(probes 64791:67537) 6.2379e-05 0.00011281 Actual Copy Change Given 0.00597 0.050534 -0.0030475 -0.08473 -0.038442 0.0041632 -0.42639 0.16505 -0.50027 -0.70454 -0.096836 0.053664 0.10358 -0.024441 0.0062481 0.015308 -0.0012473 -0.66513 -0.18017 1.291 -0.27138 -0.29402 -0.098155 -0.34136 0.0034345 0.00097064 -0.068056 0.010703 0.065799 -0.0077482 -0.52792 -0.028628 -0.010646 -0.0095426 -0.59753 0.00088607 -0.027671 0.0017889 -0.0031859 0.38601 0.0375 -0.37347 0.024969 -0.00097017 0.023286 0.0015909 0.0016082 -0.088848 -0.0066432 0.017963 0.0031984 -0.030404 -0.044551 1.7718 0.043762 -0.27308 0.48131 0.0013868 0.0040243 0.010941 -0.01904 -0.22034 0.075991 0.010842 1.057 -0.41645 -0.030677 2.6316 0.067375 0.0015128 0.14021 0.44308 0.016425 0.021043 0.047694 0.0061928 0.0067769 -0.0050346 1.3258 0.0077783 -0.00055444 -0.76552 0.0012481 -0.0051227 0.027497 0.022741 0.020063 0 -0.00023338 0.0050519 0 0.11091 -0.044822 -0.030859 -0.0073339 0.0036076 -0.18856 0.0041632 -0.015604 0.029466 0.33254 0.10462 0 0.024082 0.0068379 0.0044411 -0.057979 0.0086321 -0.33479 0 0.00069327 -0.0062286 2.1676 0.58865 0.0068044 0.11206 -0.21218 -0.012713 -0.063287 -0.17056 0.0067745 -0.0022168 0.012097 -0.23153 -0.0022168 0.088741 0.10921 -0.081202 -0.042381 2.0932 0.0027745 -0.027945 -0.23116 -0.0075427 -0.10951 0.038669 0.017802 0.036886 0.019783 0.24668 -0.41234 -0.10381 0.10133 -0.52777 0.0086135 -0.012082 -0.023018 -0.0098722 0.015587 0.01433 0.013772 0.00055459 -0.00069303 -0.67775 0.097542 1.3413 0.037287 0.14622 -0.53713 0 0.0094491 0.0065262 0.13495 0.037641 -0.0020784 0.61498 2.4061 0.0020692 -0.0050286 0.15889 0.012655 0.013247 0.050923 0 -0.036674 0.053198 0.015587 0.0023581 0.025952 0 0 -0.072887 -0.43326 -0.0072706 Amplification Peak 3 - CN values 1q21.3 chr1:120521654-200300051(probes 67530:98200) chr1:154492002-154833396(probes 69647:69886) chr1:154492002-155688579(probes 69647:70222) 0.085665 0.2011 Actual Copy Change Given 0.00597 0.050534 0.96144 0.36772 -0.038442 0.0041632 0.47478 0.16505 0.50429 0.10185 0.43513 0.053664 0.10358 -0.024441 0.0062481 0.015308 -0.0012473 0.66438 -0.18017 0.02077 0.17155 0.53485 -0.098155 0.53292 0.0034345 0.00097064 -0.068056 0.38436 0.065799 -0.0077482 -0.52792 -0.028628 -0.010646 -0.0095426 -0.59753 0.51821 -0.027671 0.0017889 -0.0031859 0.38601 0.0375 0.41312 0.024969 -0.00097017 0.023286 0.0015909 0.0016082 -0.088848 -0.0066432 0.017963 0.0031984 -0.030404 -0.044551 0.26882 0.043762 0.20137 2.2478 0.0013868 1.0782 0.010941 -0.01904 0.49666 0.075991 0.010842 0.011121 0.7174 -0.030677 0.15965 0.067375 0.0015128 0.14021 0.44308 0.016425 0.021043 0.047694 0.43051 0.54344 0.56863 0.11785 0.0077783 -0.00055444 1.1755 0.0012481 0.5713 0.027497 0.42269 0.020063 0 -0.00023338 0.0050519 0 0.11091 -0.044822 -0.030859 -0.0073339 0.0036076 -0.18856 0.0041632 -0.015604 0.029466 0.33254 0.10462 0 0.024082 0.0068379 0.0044411 -0.057979 0.0086321 0.11462 0 0.00069327 0.65885 0.72093 0.58865 0.0068044 0.11206 0.26671 -0.012713 -0.063287 0.18783 0.0067745 -0.0022168 0.012097 0.18828 -0.0022168 0.088741 0.10921 -0.081202 0.12049 0.3218 0.0027745 -0.027945 0.17106 -0.0075427 -0.10951 0.23198 0.017802 0.036886 0.57558 0.24668 0.19573 -0.10381 0.10133 0.017124 0.0086135 -0.012082 -0.023018 0.087969 0.015587 0.01433 0.013772 0.00055459 -0.00069303 0.01447 0.097542 1.3413 0.037287 0.14622 0.028763 0 0.0036848 0.0065262 0.48682 0.037641 -0.0020784 0.61498 0.72018 0.35707 -0.0050286 0.15889 0.012655 0.013247 0.050923 0 -0.036674 0.053198 0.015587 0.0023581 0.36854 0 0 0.28349 0.5088 -0.0072706 Amplification Peak 4 - CN values 2q36.2 chr2:168562888-243199373(probes 217063:259419) chr2:225226123-225560218(probes 249357:249555) chr2:225053425-225893048(probes 249246:249790) 0.1091 0.1091 Actual Copy Change Given 0.0037465 0.0095883 0.021463 0.089996 0.037641 -0.0015243 0.38181 0.025812 -0.0034627 -0.01263 0.02511 0.17211 -0.3409 0.0020077 0.0013451 -0.0069195 0.022585 -0.0011087 0 0.00458 0.00045003 0.10804 -0.065716 0.0012481 0.0064919 0.0072217 -0.051244 -0.00097017 -0.0076101 -0.0029091 -0.52353 0 0 0 -0.5843 -0.005261 0.00027728 0.00097064 0.0079175 0.23566 0.045141 0.027686 -0.015604 0.0019418 0 0 0.0013868 -0.00026599 -0.0053992 -0.011659 -0.001883 0.36493 0.0071134 -0.018566 0 -0.020138 0.45871 -0.0016629 0.083198 -0.014916 1.0618 -0.064643 -0.04428 0 0.00027728 -0.00037512 0.03214 0.021323 0.10877 0 0.0047429 0.00097064 0.022665 -0.27224 0.065226 0.0016091 0.54803 -0.0040162 -0.0082336 0.067948 0.0013868 -0.00069303 0.00083195 0.56472 0.023706 0.2078 -0.031905 -0.005261 0.011539 0.004774 0.00069327 -0.0024938 0.095363 0.0012481 0.029184 -0.0020784 0.01285 0.0034687 0.0044411 0.0054139 0.098997 0.063223 0.0029797 -0.012482 0.0043356 0.011679 0.061365 0.076085 0.042307 0.23055 0.097252 -0.0056757 -0.01354 0.42385 -0.0057424 -0.035109 0.22237 0.029044 -0.099459 0.14786 0.3153 -0.0087146 0.010285 0.17845 0.033408 -0.0078403 -0.0069526 0.068239 0.041741 0.1353 0.012516 -0.0011448 0.15159 0 0.1613 0.0071206 0.0062481 0.018383 -0.0084385 0 0 0 0.00089878 -0.0042929 0.0019418 0.023227 0.008892 -0.00013862 0.00083195 0.0048579 0.12977 0.0019639 0.0019418 1.3792 0.020343 -0.01106 -0.0024253 -0.063838 0.53872 0.00069327 0.0077576 -0.0060904 0.001803 0 0.020903 -0.0045695 1.8836 -0.014239 0.0083351 -0.62771 -0.0123 0.0037799 -0.005261 0.00088267 0.0020805 0.0080185 0.066802 0.0019418 0 0.040468 0.15382 0.10372 0.039619 -0.0029091 Amplification Peak 5 - CN values 3p12.2 chr3:82198839-82960457(probes 306274:306689) chr3:82687134-82762059(probes 306548:306584) chr3:82687134-82768701(probes 306548:306587) 0.20695 0.20695 Actual Copy Change Given 0.0022193 -0.0013858 0.53169 -0.099077 -0.019964 0 0.00013863 -0.012438 0.0091705 -0.70974 -0.052261 -0.34125 0.06915 0.0024969 0.00097064 -0.53946 -0.028218 0.015727 0.024408 -0.12966 -0.43745 -0.30416 -0.10079 -0.3112 -0.039155 0.011539 -0.38956 -0.35954 0 0.011539 0 -0.038442 -0.67939 -0.0014411 0.0033504 0.0038854 -0.045409 0.013911 0.025812 3.6569 -0.085324 -0.016704 -0.047124 0.00097064 -0.0056757 0.0020805 -0.0026322 -0.12161 -0.038714 0 0.0013941 -0.010903 0.28074 -0.014717 0.0054139 -0.20535 -0.48271 -0.013127 0.0063226 -0.11887 0.36035 0 0.1437 -0.027798 -0.012162 -0.61573 -0.041024 0.50481 -0.024114 -0.37494 -0.035448 -0.47353 0.024548 0 -0.011198 -0.32372 -0.086942 -0.0022168 -0.011887 0.067986 0.0039006 0.019363 0.0063871 -0.61248 0.022725 2.2696 0.010564 0.0015255 -0.26444 -0.0076935 0 -0.1458 0.012655 -0.061308 0.010146 0.0093098 -0.21704 0.0033299 -0.0008316 -0.01106 0.019783 -0.085059 -0.0019399 -0.029082 0.00031072 0.0058309 0.055943 -0.30587 -0.10395 0.0013868 0.0091257 -0.0037395 -0.68852 0.22314 0.0051359 -0.071273 0.30905 0.14295 0.014623 0.003532 -0.00013862 0.022585 -0.053881 -0.2128 -0.31211 0.0018492 -0.0047079 -0.21552 -0.013677 0.16646 0.0034687 0.024689 -0.14605 -0.015152 -0.10579 -0.046952 0.01433 -0.039054 0.0012481 0.15412 -0.21491 0.089706 0 0.0029133 0.060651 0.042107 0.012376 -0.00037858 -0.018765 0.0015255 -0.44102 0.00027728 0.0007779 -0.013815 -0.47839 -0.24021 0.002982 0.045566 -0.050776 0.0041632 0 -0.0065799 -0.01093 -0.12834 0.0011093 0.010424 -0.034005 0.0031797 -0.054754 -0.016792 0.030873 -0.00050871 0.0041632 0.00060421 0.0075 0.0048198 0.072684 0.0037465 0.026935 -0.046583 -0.043952 0.095568 -0.34527 -0.047936 Amplification Peak 6 - CN values 3q26.2 chr3:148386857-198022430(probes 340107:365381) chr3:169231353-169774820(probes 350887:351227) chr3:169231353-170319954(probes 350887:351511) 0.16151 0.16151 Actual Copy Change Given 0.0022193 -0.0013858 0.53169 1.563 0 0 0.0070826 -0.012438 0.001575 0.01637 -0.052261 0.084354 -0.17862 0.0024969 0.00097064 0.03031 0.0012481 0.015727 0.024408 -0.12966 0.043475 0.11976 -0.1129 0.00010548 0.0038511 0.014749 0.39637 0.10691 0 0.011539 0 -0.038442 -0.67939 -0.0071958 -0.59345 0.0026357 -0.046642 0.013911 0.66586 0.32689 -0.085324 -0.016704 -0.0030475 0.00097064 -0.0056757 0.0020805 -0.0026322 -0.12161 1.0774 0 0.0013941 0 0.28074 -0.014717 0.0054139 -0.20535 0.0024969 -0.013127 0.0063226 -0.1067 0.36035 -0.0087767 0.13791 -0.0013858 -0.012162 0.020244 -0.041024 0.79452 -0.024114 0.020483 -0.035448 0.018943 0.024548 0 0.050108 0.01023 0.50512 -0.0022168 -0.011887 0.072971 0.016006 0.019363 0.0015255 0.018523 0.022725 0.38438 0.010564 0.0015255 0.2966 -0.0076935 0 -0.1458 0.012655 -0.061308 0.010146 0.0093098 0.40884 0.0033299 -0.0008316 -0.01106 0.26671 -0.085059 -0.0019399 -0.029082 0.00031072 0.0058309 0.055943 0.10971 -0.10395 0.0013868 0.0114 -0.0076101 -0.69813 0.60815 0.0051359 -0.071273 0.30282 0.14295 0.014623 0.003532 0.026795 0.00458 -0.053881 -0.2128 0.30237 0.0018492 -0.0047079 0.35904 -0.013677 0.16646 0.0034687 0.024689 -0.14605 -0.015152 -0.10579 -0.046952 0.01433 0.012655 0.0068044 0.15412 0.1646 0.089706 -0.000321 -0.00097017 0.71396 0.042107 0.012376 -0.00037858 -0.018765 0.0015255 -0.11858 0.00027728 0.0007779 0.64176 0.2107 -0.24021 0.002982 0.32318 -0.030131 0.0041632 0 -0.0065799 0.62006 0.0093583 0.0011093 0.0068044 -0.034005 0.0031797 0.051814 -0.015482 0.030873 0.3955 0.0041632 0.00060421 0.0075 0.0048198 0.072684 -0.0008316 0.026935 -0.020138 -0.019314 0.095568 -0.34527 -0.0038779 Amplification Peak 7 - CN values 4p16.3 chr4:1-2148628(probes 365382:365731) chr4:1648453-1861569(probes 365535:365631) chr4:1-2155153(probes 365382:365733) 0.037752 0.037752 Actual Copy Change Given 0 -0.0066432 0.51856 -0.16408 -0.051046 -0.0033243 0.0081904 -0.013264 -0.0013858 0.0059149 -0.057654 -0.1294 0.61734 -0.00041585 -0.0008316 0.0075821 0.00097064 0.012655 -0.24703 0.022953 0.0028087 -0.069332 1.4003 -0.32843 -0.053375 -0.0033243 -0.33796 -0.4013 0.068808 -0.0042929 0.0013219 0.94731 -0.024435 0.0097276 1.182 0.0086135 1.4207 -0.029721 0.013492 -0.10171 0.020343 -0.36796 0.019643 -0.0018014 -0.00069303 0.00097064 -0.0016629 0.0091705 -0.0069195 0.032281 -0.0001053 0.0011899 -0.10959 -0.0079628 0.23272 0.21822 -0.0024938 0.0073609 0.020763 0.011485 -0.12278 -0.21614 -0.27344 -0.20174 0.012795 -0.00037512 0 -0.21648 0 0.0038854 -0.005261 0.017824 -0.065716 0.0098669 -0.016841 -0.43836 0.012209 0 -0.023369 -0.18974 2.4546 -0.81356 0.0022193 3.6569 0.022585 -0.10343 0.012097 0.0016642 0.68273 -0.0061739 0.0015255 -0.29497 0.083198 0.023566 -0.032041 0.001802 0.098182 0.0075 0 0.00041593 -0.38425 0.17437 -0.0022168 -0.016336 -0.0035677 -0.10788 0.07484 -0.08911 -0.007472 0.00458 -0.0048461 0 0.0027745 -0.054016 0 0.038558 -0.015879 0 0.01239 -0.0030475 -0.0045695 0.0020805 0.021183 -0.20958 -0.30334 0.0042095 -0.11758 0.024412 -0.033405 0 0.0052749 0 0 -0.001762 -0.46099 0.0026735 0.40511 0.0072217 0 -0.023703 -0.038034 -0.10316 0.0008283 -0.0042929 -0.2418 -0.076601 -0.22515 0 0.00041593 -0.00055444 0.14622 0.001058 -0.00097017 0 -0.13923 -0.040426 -0.0012162 -0.067458 0.040892 0.0056919 -0.0073339 0.0051359 -0.0073339 -0.014228 -0.0024938 0.0060448 -0.05752 0.014737 -0.024726 0.052225 0.030451 0 -0.0022168 -0.0021673 0.0070826 -0.072177 0.037217 0.0012481 0.021323 -0.0076101 0.15009 0 -0.0049844 -0.005814 Amplification Peak 8 - CN values 6p21.31 chr6:34073534-34891140(probes 587390:587703) chr6:34074464-34267035(probes 587391:587462) chr6:34074464-34461157(probes 587391:587551) 0.098493 0.098493 Actual Copy Change Given -0.36031 -0.2978 -0.013677 -0.0011087 -0.029721 -0.095858 -0.0020784 0.11468 -0.032255 -0.71456 -0.063972 -0.28644 -0.12148 -0.0016629 -0.068663 -0.54087 -0.0053992 -0.14618 -0.54734 -0.2531 -0.03037 -0.08612 -0.12509 -0.0044312 -0.054184 0.0062481 -0.15068 -0.12108 -0.4341 0.0020805 -0.57521 -0.037459 0.60919 -5.4445e-05 -0.60563 -0.011611 -0.051046 -0.031905 -0.0040162 0 -0.046177 -0.33687 -0.64659 0 -0.0069195 -0.0034627 -0.0069195 -0.15975 -0.0206 0.016705 -0.048065 -0.018216 0.014888 -0.039741 -0.080541 -0.28774 -0.022606 0.0058309 -0.0048461 -0.13432 0.30011 -0.17259 -0.12564 -0.15682 -0.0094046 0.0079584 -0.14785 -0.21651 -0.15477 -0.00072691 -0.062361 -0.22576 -0.061342 -0.63357 0.084787 -0.0054541 -0.031522 -0.0078863 -0.02104 3.6569 -0.37403 0.021884 -0.12746 -0.012851 -0.31085 -0.29022 -0.37042 -0.00069303 -0.17138 -0.0029927 0.00013863 -0.18803 -0.083333 -0.15362 -0.023155 -0.024935 0.35225 -0.23012 -0.030404 0.0012481 0.38072 0 0.010564 -0.033312 -0.0042595 -0.084395 -0.031026 -0.3134 0.1136 -0.10579 -0.15822 -0.0030475 -0.021705 0.16565 0.0070826 -0.072075 -0.21342 -0.15032 0.0079315 -0.016567 0.0044411 -0.024935 -1.4285e-05 -0.22335 0.011679 -0.0020271 -0.12265 -0.23655 0.0033299 -0.19745 -0.00049467 0.011121 -0.27846 -0.0082047 -0.60899 -0.032277 -0.44997 0.0172 -0.57591 -0.18861 0.085943 -0.0031859 0.00041593 0.57505 -0.34538 -0.0057333 0.010006 0.00013863 -0.019177 -0.0023553 -0.27631 0 -0.00041585 -0.017803 -0.47976 0.1945 -0.049222 -0.053341 0.023312 -0.49715 -0.0033243 -0.023429 -0.0091286 0.0055529 0.0075 -0.036674 0.004719 0.021172 -0.068663 0.2861 -0.40252 -0.0049512 -0.43311 -0.0013362 -0.035176 -0.030709 -0.047395 -0.0019399 2.2027 0.0080352 -0.20402 -0.26836 -0.1349 0.00458 Amplification Peak 9 - CN values 7q22.1 chr7:97568629-99200083(probes 713121:713769) chr7:98406354-98969281(probes 713520:713703) chr7:97524031-100613356(probes 713118:714246) 0.0002473 0.0002473 Actual Copy Change Given 0.11184 -0.00027724 0.5359 0.10994 0.035665 0.042224 0.013074 0.15233 0.0062481 0.0071667 0.066945 0.068522 -0.23606 0.0087528 0.21514 0.01419 0.0063871 0.011121 0.018103 0.022725 0.0018371 0.14295 1.3656 0.0024969 0.11136 0.34518 0.00084184 0.013213 -0.007472 0.12211 0.52817 0.9469 0.61317 0.0073609 0.015188 0.0024969 1.4345 0.022444 1.1449 0.36231 0.050108 0.037782 -0.065716 0.0033299 0.021603 0.0024969 0.022585 0.0098669 0.15876 0.0070053 -0.001794 0.41588 0.010982 0.017606 0.053379 1.0883 0.0055529 0.0020805 0.64928 0.025812 0.61571 0.13835 0.36838 0.010285 0.0086135 0.023327 0.32866 0.017544 0.26718 0.0027745 0.15442 0.013213 0.018029 3.6569 0.034536 -0.012217 -0.0021057 0.00013863 0.071822 1.0103 0.0075 0.00069327 0.0029133 -0.001042 0.64304 0.010022 0.0079805 -0.0015243 -0.28001 0.0040793 0.018243 0.012546 0.11038 0.017264 0.025531 0.0011093 0.23836 -0.0015243 -0.0026322 -0.014067 0.11701 0.062223 0.010285 0.035196 0.00058804 0.0087528 1.2342 -0.085085 0.16295 -0.0011087 0 0.035947 0 0.86473 0.00041593 0.19352 -0.22194 0.0083351 0.014255 -0.03771 0.21945 0.0091705 0.019503 0.20457 0 0.0015717 0.11852 0.061369 0.019783 0.15344 -0.0022954 0.0077783 0.17987 -0.07464 0.20091 0.024446 0.021043 0.0026357 0.015727 0.18722 0.35528 0 0.0056919 0.0066653 0.021744 0.041541 0.26153 0.00069327 0.0081959 0.021603 0.14518 -0.00027724 0.00055459 0.60395 0.29915 -0.23765 0.015935 0.13125 0.090575 3.6569 0 0 0.32543 -0.074329 0.023145 0.60557 0.083631 -0.0041658 0.023145 0.23332 0.021463 0.38324 0 0.031205 0.0040243 0.0057928 0.074552 0.5359 -0.14361 0.04429 0.16971 0.099493 0 0.003191 Amplification Peak 10 - CN values 8p11.22 chr8:37097564-38558525(probes 765978:766657) chr8:38382938-38525002(probes 766575:766636) chr8:37101004-38559325(probes 765979:766659) 0.021017 0.030971 Actual Copy Change Given 0.0015255 -0.29638 3.6569 -0.15822 0.0023581 0.004719 -0.4214 0.1255 -0.17158 0.0021644 0.050392 0 -0.26516 0.0055529 0 0.0094491 0.73986 0.0014535 -0.60564 -0.013677 -0.014194 -0.093403 0 0.28343 0.0038511 -0.34044 -0.39513 0.0044411 -0.45404 -0.020001 -0.56957 0.027919 0.58375 -1.0621 0.42606 -0.035721 -0.056136 0.12461 -0.018018 -0.4097 -0.068395 0.037217 -0.65165 -0.00013862 0.0095883 0.012795 0.0040243 0.0087528 0.50707 -0.61959 -0.050015 0.40227 -0.0055375 -0.038789 -0.1294 0.13421 -0.005261 -0.016429 -0.15706 0.016705 -0.57644 0.11067 0.14593 -0.48271 -0.10837 -0.014876 0.028763 0.020343 0.15547 0.73625 0.045566 0.0094491 -0.14772 0.020483 -0.0097502 0.00022222 0.0033024 0.0023581 -0.097232 -0.63746 0.0095883 0.00098044 0.36871 0.00458 -0.67866 -0.086031 0.0043021 0.0020805 -0.29177 -0.0097639 0.0013868 -0.15682 -0.063032 0.021884 0.037076 0.0015255 0.22798 0.10848 -0.00063467 0.016065 -0.16001 0.11155 -0.0016629 0 -0.0050894 -0.038306 0.07815 -0.15964 0.17905 0.34291 -0.0008316 0.0048579 -0.71479 -0.070135 -0.0020784 0 0.15323 -0.19112 0.078453 -0.024251 0 -0.00027724 0 0.17437 0.0036076 0.00032345 0.033127 -0.19675 0.03637 0.22274 0 0.56028 -0.072541 0.035141 0.21161 0.081361 -0.0020784 -0.028673 -0.58314 0.15203 -0.48848 1.667 0.00013863 -0.55005 0.008892 -0.045149 -0.24642 0.014379 -0.0025971 -0.00041585 -0.46153 -0.0023553 -0.0012473 -0.70818 0.015028 -0.24655 -0.0075418 0.13152 -0.53632 0.46365 -0.010784 -0.012576 -0.00097017 -0.10657 -0.011473 0.12285 0.65222 -0.51826 0.04812 -0.77661 0.014051 0.0015589 -0.011335 0.00060421 0.0081959 0.0057928 0.28169 -0.032314 -0.13858 -0.0094046 0.16205 0.11468 0.047126 0.0055529 Amplification Peak 11 - CN values 8p11.21 chr8:39698409-41157238(probes 767134:768152) chr8:40543053-40765716(probes 767770:767925) chr8:40429031-40810929(probes 767706:767942) 0.06475 0.16496 Actual Copy Change Given 0.0015255 -0.29638 -0.005261 1.4767 0.0023581 -0.0033292 -0.4214 0.1255 -0.17158 0.0021644 0.050392 0 0.22731 0.0055529 0 0.0094491 0.05025 0.0014535 -0.60564 -0.31949 -0.014194 -0.093403 0 0.28343 0.0038511 0.018383 -0.39513 0.0044411 -0.45404 -0.020001 -0.56957 0.027919 0.58375 -1.0621 0.42606 -0.035721 -0.056136 0.12461 -0.018018 -0.4097 -0.068395 0.037217 -0.65165 -0.00013862 0.0095883 0.012795 0.0040243 0.0087528 0.50707 -0.61959 -0.050015 0.40227 -0.0055375 -0.038789 -0.1294 0.13421 -0.005261 -0.016429 -0.15706 0.016705 0.47306 0.11067 0.14593 -0.48271 -0.10837 -0.014876 0.028763 0.020343 0.15547 1.0105 0.045566 0.0094491 -0.14772 0.020483 0.070673 0.00022222 0.0033024 0.0023581 -0.097232 0.36019 0.0095883 0.00098044 0.36871 0.00458 -0.67866 -0.086031 0.0043021 0.0020805 -0.29177 -0.0097639 0.0013868 -0.15682 -0.063032 0.021884 0.037076 0.0015255 0.22798 0.10848 -0.00063467 0.016065 -0.16001 0.11155 -0.0016629 0 -0.0050894 -0.038306 0.07815 -0.15964 0.17905 0.34291 -0.0008316 0.0048579 -0.71479 -0.070135 -0.0020784 0 0.15323 -0.19112 0.13378 -0.024251 0 -0.00027724 0 0.17437 0.0036076 0.00032345 0.033127 -0.19675 0.03637 0.22274 0 0.010842 -0.072541 0.035141 0.21161 0.081361 -0.0020784 -0.028673 -0.58314 0.15203 -0.48848 0.086522 0.00013863 -0.55005 0.008892 -0.045149 -0.24642 0.014379 -0.0025971 -0.00041585 3.6569 -0.0023553 -0.0012473 -0.70818 0.015028 -0.24655 -0.0075418 0.13152 -0.53632 0.095213 -0.010784 -0.012576 -0.00097017 -0.10657 -0.011473 0.12285 0.65222 -0.51826 0.04812 -0.77661 0.014051 0.0015589 -0.011335 0.00060421 0.0081959 0.0057928 -0.045841 -0.032314 -0.13858 -0.0094046 0.16205 0.11468 0.047126 0.0055529 Amplification Peak 12 - CN values 8q24.21 chr8:128671421-128679033(probes 815729:815738) chr8:128673108-128678985(probes 815730:815737) chr8:113366166-146364022(probes 806016:825684) 3.7872e-13 3.7872e-13 Actual Copy Change Given 0.0015255 0.18404 -0.019215 0.011189 0.032422 -0.012759 0.0029133 0.12668 1.9041 0 0.050392 0 0.22731 0.0055529 0 0.0094491 0.062651 0.017264 0.45683 0.13524 0.46318 -0.093403 0 0.34441 0.011644 0.018383 0.4017 0.0044411 0.40627 -0.020001 -0.56957 0.036073 0.60196 0.012934 0.41979 -0.035721 -0.042924 0.12461 0.5591 -0.38134 0.030591 0.037217 0.60286 -0.00013862 0.0095883 0.012795 0.020623 0.0087528 0.51211 0.030881 -0.013119 0.40227 0.53538 0.13516 -0.13018 0.12329 -0.005261 -0.016429 0.1783 0.016705 1.6759 0.33901 0.14593 2.6547 0.23349 3.6569 0.028763 0.020343 0.15547 0.028763 0.045566 0.011679 0.19208 0.020483 0.070673 0.83719 1.1592 0.0023581 0.041458 1.0266 0.0095883 0.0029133 0.10307 0.00458 0.62897 0.19529 0.0041794 0.0020805 0.82151 -0.0097639 0.0013868 0.22453 -0.063032 0.021884 0.037076 0.0015255 3.6569 0.10848 0.035524 0.067518 0.38882 0.20289 -0.0016629 0 -0.0050894 -0.038306 0.07815 -0.079816 0.17905 0.0033843 -0.0063668 0.0048579 0.33254 0.32834 -0.0020784 0.038558 0.1679 0.36104 0.13378 -0.024251 0.30767 0.39015 0 0.59027 0.0036076 0.00032345 0.22901 0.65149 0.082043 0.32866 0 0.011539 0.42962 0.035141 0.20824 0.081361 0.44528 0.027216 0.54609 0.56881 0.84218 0.93936 0.00013863 0.49362 0.033831 -0.045149 2.5872 0.048972 0.0051359 -0.00041585 -0.10775 -0.0023553 -0.0012473 1.742 0.030451 -0.24655 -0.0075418 0.14191 0.64268 0.0090312 -0.010784 -0.0038779 -0.00097017 -0.01354 -0.011473 0.12285 3.6569 0.45666 0.04812 0.27756 1.7252 0.0015589 -0.011335 0.00060421 0.0081959 0.0057928 2.2969 -0.032314 0.17694 0.026814 0.16205 0.11044 0.086377 0.0055529 Amplification Peak 13 - CN values 9p13.3 chr9:35244633-35808362(probes 846663:846914) chr9:35671628-35687195(probes 846857:846867) chr9:34542637-36539263(probes 846287:847317) 1.193e-05 1.193e-05 Actual Copy Change Given -0.00055444 -0.0048461 -0.039148 -0.013402 0.0040243 -0.34308 -0.10039 -0.18131 0.018803 -0.71215 0.016006 -0.22084 0.14518 -0.0071958 0.55992 3.6569 -0.036946 -0.0037395 -0.81441 -0.27727 -0.47158 -0.30345 1.3699 0.0016642 -0.09436 -0.0056757 -0.38319 -0.03245 -0.007472 0.017824 0.021118 0.94323 -0.012851 0.0034687 0.046154 -0.58304 1.445 -0.025917 -0.0055792 -0.37752 -0.0971 -0.13096 -0.6464 0.00041593 -0.0079568 -0.0024938 -0.34125 -0.27643 -0.020373 -0.60786 -0.021035 -0.50784 0.0095883 0.011741 0.069525 0.16895 0.47495 -0.11051 -0.016841 -0.27266 0.41312 2.4636 1.1877 -0.47923 -0.3953 -0.080369 -0.21032 0.50811 -0.15067 -0.37324 -0.032996 -0.47554 -0.13923 -0.69351 -0.044686 1.0709 -0.61818 0.0034687 0.057939 0.05694 -0.0023553 0.021744 -0.03395 -0.0049844 0.062794 -0.11755 -0.012162 -0.0008316 -0.28358 -0.010729 -0.0016629 0.5926 0.0015255 -0.070402 -0.035531 -0.04069 -0.16785 -0.0011087 -0.053881 -0.010094 1.4697 -0.13199 -0.00069303 -0.14648 -0.0064816 -0.082801 -0.16357 -0.14497 -0.34377 -0.076278 -0.00027724 0.3766 0.0026357 -0.10211 -0.00013862 -0.10887 0.29342 -0.16914 -0.10249 -0.060076 -0.33479 -0.0049844 -0.13031 -0.33422 -0.30345 -0.0030014 -0.027124 0.054665 0 0.16661 -0.043737 1.3911 -0.3567 -0.030591 -0.63083 -0.020238 -0.0013858 -0.031359 -0.016704 -0.0067813 0.1841 0.0069435 -0.052849 0.010146 -0.0098185 1.6056 0.00083195 -0.0018014 -0.022881 0.0026357 -0.43897 -0.0015243 -0.0008316 -0.68852 -0.44027 -0.15413 -0.050246 0.14816 -0.52798 -0.4985 -0.0031859 0.097252 -0.0034627 -0.13212 -0.0019399 -0.0012725 0.011679 -0.010519 -0.0033243 0.044558 0.35675 -0.0082673 -0.00069303 -0.00078202 -0.097363 -0.00045383 -0.12148 -0.30087 0.18692 -0.039937 -0.051316 -0.29504 -0.42287 -0.042517 Amplification Peak 14 - CN values 12p13.33 chr12:1-5520802(probes 1050678:1053490) chr12:1-1301400(probes 1050678:1050880) chr12:1-5521559(probes 1050678:1053492) 0.0041088 0.0056247 Actual Copy Change Given -0.016567 -0.29071 -0.043195 0.1616 -0.0123 -0.00055444 -0.094856 0.47718 0.023426 1.9048 0.025952 0.03214 -0.38828 -0.014778 0.00055459 -0.52951 0.046275 0.011261 -0.23741 0.023847 -0.4665 0.11462 1.2937 0.12477 0.042131 -0.35213 0.18533 -0.39464 -0.2781 -0.011708 0.53336 0.93305 0.58801 0.0047696 0.60524 0.0056919 0.7467 0.0043021 0.058367 -0.38033 -0.040752 0.023366 0.66734 -0.0018014 0.0030522 -0.0075662 0.012655 0.0038854 0.33076 -0.59468 0.0056993 0.0098669 0.016705 0 0.08161 0.2084 -0.47173 -0.037762 0.57987 0.023145 0.54753 0.118 0.56116 0.82079 -0.018353 0.0046788 -0.21602 -0.18055 -0.04567 -0.0027707 0.0016642 0.48975 -0.036538 -0.021784 -0.014778 -0.0055924 0.47543 -0.58559 0.067925 -0.029584 0.0036076 -0.76355 -0.10513 -0.61834 3.6569 0.038929 -0.35923 0.0020805 0.18283 -0.0036847 -0.00027724 0.0040243 -0.010232 -0.033269 0.041175 0.034254 0.22336 -0.00069303 0.0012481 -0.0089906 -0.10026 0.087245 -0.0010139 0.029561 0.018837 -0.41372 0.094927 -0.097173 0.1431 -0.0037395 -0.049695 -0.0031859 0.00055459 0.69493 0.0087528 -0.034019 0.26388 0.036794 0.01616 0.0091705 0.011958 3.6569 -0.069332 -0.23545 0.0058309 -0.0034166 0.046842 0.13614 -0.035721 -0.19994 -0.015329 0.0069435 0.13155 0.053847 -0.60502 -0.0014866 0.013074 -0.029448 0.59134 0.1348 0.89668 0.018243 -0.0023553 0.022725 0.023987 -0.0026899 -0.0022168 -0.0023553 0.00055459 0.43952 -0.11819 0.0011093 0.00055459 0.014749 0.27001 0.090285 -0.035381 -0.060211 0.037641 -0.010517 0.0016642 0.43699 -0.0015243 -0.010784 -0.014641 0 -0.0029091 0.019631 -0.070135 3.438 0.0026357 0.011991 0.0051359 -0.0024442 0.0049969 -0.0022454 0 0 0.031014 -0.0027707 -0.0013858 0.6477 0.044638 0.0058309 Amplification Peak 15 - CN values 12p11.21 chr12:31421842-31442221(probes 1068865:1068872) chr12:31421898-31440450(probes 1068866:1068871) chr12:30846561-32410586(probes 1068552:1069414) 0.0054669 0.0066479 Actual Copy Change Given -0.016567 -0.29071 -0.012851 0.1616 -0.0123 -0.00055444 -0.0078863 0.46536 0.023426 1.9048 0.025952 0.39811 -0.38828 -0.014778 0.00055459 1.0434 0.046275 0.011261 -0.2486 0.023847 0.54422 0.11462 1.2937 0.12477 0.042131 -0.33029 0.18533 -0.39159 0.13184 -0.011708 0.53336 0.93305 0.58801 0.0047696 0.60524 0.0056919 0.71133 -0.00017862 0.021171 -0.37567 -0.040752 0.023366 0.0098669 -0.0018014 0.0030522 -0.0019399 0.012655 0.0038854 0.33076 0.58775 0.0056993 0.0098669 0.016705 0 0.08161 0.17795 -0.0042929 -0.037762 -0.027945 -0.068119 0.54753 0.118 0.15323 0.74537 -0.018353 0.0046788 -0.090361 0.42536 -0.056442 -0.0027707 0.0016642 0.48975 -0.036538 -0.021784 0.0051359 -0.0055924 0.44525 0.57505 0.069239 -0.029584 0.0036076 -0.76355 -0.10513 -0.036129 1.2271 0.038929 0.021463 -0.00055444 0.19573 -0.0036847 -0.00027724 0.0040243 -0.010232 -0.033269 0.041175 -0.0099565 0.22336 -0.00069303 0.0012481 -0.0089906 0.38998 -0.0073339 -0.0010139 0.029561 0.018837 -0.36295 3.3662 1.2271 0.1431 -0.0037395 -0.049695 -0.0031859 0.00055459 0.69493 -0.0022168 -0.034019 0.26734 0.036794 0.01616 0.0091705 0.011958 0.0068044 -0.069332 1.467 0.0058309 -0.0034166 -0.048342 0.13614 -0.035721 -0.19994 -0.015329 0.0069435 0.41982 0.053847 -0.60022 -0.072449 0.013074 -0.029448 -0.5711 0.1348 0.92817 0.018243 -0.0023553 0.022725 0 -0.0026899 -0.0022168 0.00027728 0.00055459 0.020063 -0.1092 0.0011093 0.00055459 0.010564 -0.45219 0.090285 -0.035381 -0.060211 0.037641 -0.0045695 0.0016642 0.40427 -0.0015243 -0.010784 -0.014641 0 -0.0029091 0.0045154 -0.070135 0.057637 0.0026357 0.011991 0.0051359 -0.0024442 0.0049969 -0.0022454 0 0 0.031014 -0.0027707 -0.0013858 0.6285 0.044638 0.0058309 Amplification Peak 16 - CN values 12q15 chr12:68307608-71340084(probes 1086390:1088496) chr12:70509939-70526823(probes 1087975:1087980) chr12:68310485-71558447(probes 1086391:1088652) 0.0061805 0.0061805 Actual Copy Change Given -0.016567 -0.28928 0.013492 -0.16396 -0.0123 -0.00055444 -0.0078863 0.098124 -0.49975 -0.69933 0.025952 0.018803 0.073977 -0.085192 0.00055459 -0.52471 0.046275 0.011261 -0.53652 -0.27977 -0.0024597 0.11462 1.2937 0.33399 0.042131 0.0019418 0.18533 -0.39508 0.1311 -0.011708 0.53336 0.93305 0.58919 0.0011093 0.59706 0.0056919 1.4243 -0.00017862 0.58256 -0.37567 -0.040752 0.027778 0.015447 -0.0018014 -0.0017173 -0.0019399 0.0037676 0.0038854 0.33076 0.60485 0.0056993 -0.013127 0.016705 0 -0.11581 0.17795 -0.0042929 -0.037762 -0.027945 -0.068119 0.2205 0.10964 1.3258 -0.46089 -0.018353 0.0046788 -0.090361 1.5908 -0.056442 -0.0029091 0.0016642 -0.46897 -0.036538 -0.67756 0.0051359 0.0025806 3.6569 -0.0045695 0.069239 -0.029584 0.0036076 -0.76355 -0.10513 -0.61777 1.7225 0.038929 0.021463 -0.00055444 0.22222 -0.0036847 -0.00027724 0.0040243 -0.010232 -0.033269 -0.0071958 -0.0099565 0.22336 -0.00069303 0.0012481 -0.0089906 -0.30814 -0.0073339 -0.00055444 0.029561 0.018837 -0.0029892 0 0.14153 -0.33144 -0.0037395 -0.049695 0.0012481 0.00055459 -0.10723 -0.0022168 -0.035382 -0.27236 0.036794 1.2871 0.0091705 -0.32113 0.0022193 -0.069332 -0.22207 -0.30862 -0.0007864 -0.048342 -0.198 -0.035721 -0.19994 -0.015329 0.0069435 0.40894 -0.09482 0.038489 -0.072449 1.3159 -0.0092934 0.023847 0.1348 0.15159 0.01065 -0.0023553 -0.52399 0 -0.0026899 -0.0022168 0.00027728 0.00055459 0.020063 -0.42254 0.0011093 0.00055459 0.010564 -0.45219 0.090285 -0.035381 -0.060211 0.029628 -0.0045695 0.0016642 0.40427 -0.0015243 -0.010784 -0.014641 0 -0.0029091 0.0045154 -0.070135 0.057637 0.0026357 0.011991 0.0051359 -0.0024442 0.0049969 -0.0026702 0 0 0.031014 -0.0027707 -0.0013858 -0.18793 0.045991 -0.012956 Amplification Peak 17 - CN values 15q26.1 chr15:54962553-102531392(probes 1246087:1273810) chr15:90706721-90953647(probes 1267032:1267119) chr15:90706721-90958255(probes 1267032:1267122) 0.20695 0.20695 Actual Copy Change Given 0.0027745 0.0091705 -0.024251 0.098554 0.0020805 0.011679 -0.20809 -0.018902 -0.47115 -0.024579 0 0.45734 0.47993 0.00027728 -0.25079 -0.0049844 -0.029038 0.010842 0.028341 0.021603 0.009344 0.13228 -0.092478 -0.0024938 -0.022777 0.43885 -0.17695 -0.0084385 0.057939 -0.0066432 0.54798 -0.03095 -0.01904 0.001803 -0.57069 0.0077783 -0.028901 -0.0056757 1.4464 0.85245 0.0047875 -0.29296 -0.63547 -0.0029091 -0.0029321 -0.0033986 0.032563 0.0011093 0.33901 -0.43268 -0.0011014 -0.46926 0.017544 0.013694 -0.13057 -0.31984 0.013353 -0.016017 1.0168 0 -0.5391 -0.24265 -0.025209 -0.19036 -0.0078863 0.0085152 0.040609 -0.076278 0.14756 0.0022193 -0.022332 0.011539 -0.031496 0.013353 -0.015466 -0.040806 -0.53482 0.0095883 0.15188 -0.27655 -0.010094 -0.76914 -0.0020784 -0.013815 0.020483 0.076151 0.0011093 0.00055459 0.26106 0.0093649 -0.0015551 -0.0040162 -0.093535 -0.061425 0.011818 -0.014641 0.20739 0 0.0036137 0.0041703 -0.024114 -0.068261 0.0015255 0.021979 -0.0021834 0 0.070678 -0.10142 0.044999 -0.0098185 0.0055529 0.0095883 0.0091705 0 -0.30874 0.038417 0.047268 -0.035448 -0.097878 -0.0076101 0.34031 0.56774 -0.0019399 0.18283 -0.0040162 0.0025431 0.10293 -0.21527 -0.035176 -0.18315 0.0054139 0.010842 -0.10736 0.065796 -0.19139 -0.0020406 0 -0.0013858 0.021744 0.003191 -0.076945 -0.35863 -0.0022168 0.023005 0.0036076 0.030111 -0.0033243 0.0034687 -0.0038779 -0.0013858 0.20335 -0.0031859 0.0013868 0.015587 1.2814 -0.012713 0.028551 -0.2775 0.075945 -0.005261 -0.0008316 0.012237 0.17588 0.0012915 0.022865 0.010766 0.019223 0.36246 0 0.1033 -0.041702 -0.0074388 -0.020877 -0.0024442 0 0.0041251 -0.13458 0.00458 -0.1313 0.045282 -0.014366 -0.1035 0.035524 0.0071881 Amplification Peak 18 - CN values 17p11.2 chr17:19277362-19597719(probes 1323117:1323276) chr17:19468013-19543197(probes 1323222:1323230) chr17:19279467-19604615(probes 1323118:1323278) 0.053033 0.053033 Actual Copy Change Given -0.049154 -0.2856 -0.057157 -0.0015243 0.034395 0.0091705 0.016985 -0.060345 -0.48334 -0.6684 -0.17322 -0.0026322 0.66512 -0.019177 -0.2514 -0.55076 -0.0036011 0.62406 -0.52399 -0.2818 -0.39015 -0.31003 1.3452 0.10672 -0.055919 -0.34744 -0.39023 -0.035857 -0.43311 0.016933 0.55647 0.90543 0.57202 -0.010232 0.071556 -0.57348 1.4226 -0.048613 -0.60835 -0.38515 -0.014916 -0.00059101 -0.60719 0.00055459 0.0023581 0.00083195 0.021744 -0.010922 -0.20074 -0.56992 -0.029714 3.0389 -0.063166 -0.51337 0.010285 -0.18017 0.44392 0.062508 -0.021098 -0.22969 1.096 -0.48942 -0.2537 -0.46621 -0.38884 -0.59806 -0.13523 -0.1827 -0.038986 -0.0012473 0.013772 -0.47702 -0.072274 -0.0087146 -0.034631 -0.45012 -0.54443 0.0076392 -0.044551 -0.63547 1.6048 0.036616 -0.049816 -0.65342 -0.3133 0.0083508 -0.0069195 -0.0024938 -0.29355 -0.0042381 -0.0038779 -0.077345 -0.011473 -0.071205 -0.020824 -0.019177 -0.40092 0.70457 -0.0049844 -0.02166 -0.16103 -0.073209 -0.00055444 -0.036717 0.001559 -0.016783 -0.20477 -0.19344 -0.34297 -0.053611 -0.12726 -0.00041585 0.0075 -0.49152 -0.55877 0.0082643 -0.21193 -0.046989 0.011414 0.0086135 -0.31412 0.30362 -0.039258 -0.24812 -0.022332 -0.04125 0.026373 -0.011745 0.006109 -0.23305 -0.027208 -0.032587 -0.3634 0.018843 -0.61987 0 -0.45886 -0.030131 -0.53906 -0.018584 0.06208 -0.34125 -0.00055444 -0.51043 -0.39286 -0.030461 -0.073743 -0.0020784 -0.010508 -0.0033243 -0.49663 -0.00069303 -0.0015243 -0.6509 -0.56883 0.18192 0.0020103 -0.27392 -0.56595 -0.49965 -0.0087146 0.021884 0.03031 -0.06187 -0.0062286 -0.6333 -0.62322 -0.0087259 -0.021921 -0.080023 -0.38638 -0.080908 -0.42626 -0.0018903 -0.042517 -0.014541 -0.19011 -0.35202 -0.17272 -0.03395 -0.042652 -0.17962 -0.6332 -0.010094 Amplification Peak 19 - CN values 17q12 chr17:37726424-37951087(probes 1329352:1329473) chr17:37726766-37948873(probes 1329353:1329472) chr17:37046872-38391008(probes 1329046:1329639) 0.0010909 0.0010909 Actual Copy Change Given 0.26891 0.00055459 -0.057157 -0.0015243 0.034395 0.0081959 0.016985 -0.060345 0.043723 0.10535 0.1038 0.22623 -0.36136 -0.019177 0.061222 0.019363 -0.0036011 1.9406 -0.51712 0.015866 0.51215 1.2852 1.3452 0.10672 -0.055919 -0.34435 0.0053203 -0.035857 -0.0066432 0.016933 0.52849 0.90543 0.57202 -0.010232 0.071556 -0.0047079 1.4226 -0.048613 0.022444 3.6569 -0.014916 -0.00059101 -0.60719 0.00055459 0.0023581 0.00083195 0.021744 -0.010922 -0.020275 -0.56992 -0.029714 0.32737 -0.063166 0.026857 0.010285 -0.18017 0.018103 0.062508 -0.021098 -0.016567 -0.04048 0.16027 0.17845 -0.036674 0.37364 0.016187 -0.13523 -0.1827 -0.038986 -0.0012473 0.013772 0.018803 -0.072274 -0.0087146 -0.034631 -0.011941 0.0031636 0.0076392 -0.044551 0.047126 -0.0081753 0.036616 -0.049816 1.0819 -0.3133 0.0083508 -0.0069195 -0.0024938 0.22854 -0.0042381 -0.0038779 -0.077345 -0.011473 0.0094491 -0.020824 -0.019177 0.048176 0.0012481 -0.0049844 -0.02166 -0.16103 -0.073209 -0.00055444 -0.036717 0.001559 -0.016783 1.5831 -0.19344 0.059508 -0.053611 -0.12726 -0.00041585 0.0075 0.2724 0.0062481 0.0082643 0.2573 -0.046989 0.011414 0.0086135 -0.31412 -0.011473 -0.039258 -0.24812 -0.022332 -0.04125 0.026373 -0.011745 0.006109 0.16301 -0.027208 -0.032587 -0.052531 0.018843 -0.28073 0 0.0075284 -0.030131 -0.53906 -0.018584 0.06208 0.11257 -0.00055444 0.048404 0.058367 -0.030461 -0.073743 -0.0020784 -0.010508 -0.0033243 -0.027671 -0.00069303 -0.0015243 -0.6509 0.161 0.18192 0.0020103 0.10935 -0.067592 -0.0083005 -0.0087146 0.021884 0.03031 -0.06187 -0.0062286 0.010006 0.10482 -0.0087259 -0.021921 -0.080023 0.030732 -0.080908 0.0013868 -0.0018903 -0.042517 -0.014541 0.43294 -0.0040162 -0.17272 -0.03395 -0.042652 0.14227 0.012097 -0.010094 Amplification Peak 20 - CN values 18q11.2 chr18:19704037-19953596(probes 1359622:1359770) chr18:19826743-19864659(probes 1359688:1359716) chr18:14660483-22515075(probes 1359191:1361391) 3.7872e-13 3.7872e-13 Actual Copy Change Given -0.0029091 0.27726 0.33027 0.18132 -0.094064 0.018243 -0.0029091 0.020203 0.5062 -0.085377 0.55531 0.24264 0.20948 -0.13031 0.42587 0.0094491 0.012237 0.0097276 1.1301 -0.30921 0.015761 -0.032314 1.3552 0.0056919 -0.10752 0.0036076 -0.18983 -0.023508 -0.49131 0.0095883 0.00021248 0.94874 -0.015191 0.016705 0.014071 -0.052666 1.4383 -0.051586 0.022444 0.019783 -0.088109 -0.36488 1.9466 -0.096968 -0.03504 -0.017116 0.22746 -0.199 -0.19174 -0.61181 -0.0087073 0.73872 -0.26997 1.9563 -0.12772 0.11286 0.21514 -0.043195 0.050243 0.092025 0.77676 1.5858 0.15457 0.048546 0.032422 -0.20208 -0.067458 -0.093006 0.43716 -0.013209 1.7944 -0.46664 -0.0081624 1.415 -0.17322 1.2372 0.022557 0.5003 -0.12486 2.9792 0.38866 0.94139 -0.093535 0.50811 -0.30039 0.011974 0.33707 0.00069327 -0.0088526 -0.018024 -0.0030475 0.19269 -0.10644 -0.13005 -0.024524 -0.029721 -0.050182 -0.15528 -0.017941 -0.056442 0.24684 -0.12421 0.0063871 -0.17276 -0.0068862 0.021043 -0.19487 0.63489 0.46519 -0.15119 -0.18395 0.34064 0.029184 1.6782 1.2034 -0.011268 -0.080674 -0.16536 0.32722 -0.019863 0.0029133 0.34323 -0.1431 1.1921 0.047836 -0.058417 -0.19124 -0.19437 -0.12317 0.4831 -0.0076101 1.2319 0.51037 0.30622 0.18813 -0.13118 -0.45522 -0.024798 -0.60284 1.8405 0.27789 1.0755 -0.12226 0 -0.02603 -0.14096 0.068522 -0.026304 -0.031359 0.027778 1.0784 -0.0051227 -0.027261 0.024548 0.088258 0.060794 0.016914 -0.25612 0.20473 0.51874 -0.021098 0.027216 -0.0047079 -0.14515 -0.026441 0.82431 0 0.022713 -0.036265 -0.2091 -0.0060904 -0.022162 0.44935 -0.0082511 -0.10289 -0.030441 -0.13484 -0.35133 -0.23092 -0.076145 -0.02603 0.30352 0.10921 -0.048748 Amplification Peak 21 - CN values 19q13.2 chr19:39817101-39931030(probes 1409392:1409429) chr19:39818392-39930887(probes 1409393:1409428) chr19:28277500-41617892(probes 1402313:1410213) 3.1883e-10 3.1883e-10 Actual Copy Change Given -0.005814 2.2342 0.92189 0.13376 -0.0055375 0.016705 0.0074107 0.36793 0.45343 -0.61051 0.020203 3.6569 0.075128 -0.012989 -0.034631 -0.053071 -0.0019399 -0.011749 -0.075478 0.0040146 -0.011696 0.11594 1.2889 -0.027261 -0.028388 -0.026851 -0.008641 1.1571 -0.034359 0.0039634 0.0499 0.85601 -0.017666 -0.016429 0.15908 0.52485 0.67215 0 -0.020687 -0.046632 0.024268 -0.018078 0.053237 0.0019418 0.016006 -0.0084295 0.012516 -0.013953 0.34762 0.055088 -0.0012399 0.27947 0 0.02433 0.94772 -0.21491 -0.466 0.0024969 -0.039529 0.13155 0.37002 0.062223 -0.079476 0.011261 0.010703 -0.059499 0.045282 0.64781 0.080168 -0.00097017 0.0072217 0.026654 -0.033132 0.59062 0.041741 -0.014145 0.53903 0.00597 0.92614 0.34518 0.32914 0.023013 0.0013868 -0.032041 -0.021647 0.33369 0.00055459 -0.00013862 0.22268 0.0096435 0.0065262 -0.012438 0.0077783 0.13169 -0.0030475 0.01433 -0.10061 -0.046448 -0.0081624 0.014609 0.097833 0.037641 -0.0048461 0.021839 -0.0016295 1.2463 0.57826 0.047473 0.060794 -0.0037395 -0.0049844 0.0011093 0.0052749 0.36379 0.019363 0.046486 -0.193 0.039902 0.028495 0.01433 0.034536 -0.029448 -0.1259 0.52136 -0.0094046 -0.0032783 0 0.059512 0.21223 1.2849 0.0084743 -0.0013858 0.10687 0.072581 0.10877 0.00073109 1.2432 0.015587 0.035524 0.2523 -0.136 -0.029175 -0.0077482 0.047978 -0.0096806 1.3477 3.2036 0.0073609 0.0020805 -0.0071958 1.1457 0.0019418 -0.0019399 1.5396 0.22191 -0.044551 -0.010578 -0.028819 -0.045499 0.42738 0.0037465 0.014749 0.015168 -0.015466 0.00055459 0.013911 0.057796 -0.02522 -0.014916 0.10466 0.021043 0.0087862 0.012097 0.0023216 -0.023018 -0.023319 1.1076 0.004719 0.18889 -0.005261 0.16219 0.098911 0.039054 0.0019418 Amplification Peak 22 - CN values 20p11.23 chr20:20117297-24014137(probes 1430239:1432777) chr20:20716844-21115141(probes 1430616:1430921) chr20:20716844-21336306(probes 1430616:1431052) 0.0668 0.0668 Actual Copy Change Given -0.0033243 0.00083195 1.9006 -0.0019399 0.013911 0.0087528 0.0054139 0.19284 -0.50774 0.018468 -0.062764 0.033267 0.77926 0.0011093 -0.0019399 -0.0071958 -0.0037084 0.024242 -0.55347 -0.023429 2.9527 0.14221 1.3976 0.0020805 0.012342 -0.0040162 0.024342 -0.40694 0.04954 0.017264 0.034329 0.95652 0.57952 -0.025072 0.67792 0.010842 1.4615 -0.00069469 -0.016567 0.36617 0.027216 0.020903 0.033972 0.0012481 0.010285 0.0084743 0.0048579 0.00069327 0.00055459 0.034113 -0.0061158 0.36641 0.13435 -0.5265 0.001531 1.2222 0.050108 0.0087528 -0.00027724 0.01419 0.3928 0.20305 0.73929 0.0077783 0.010424 0.19653 0.080168 -0.21466 0.15679 -0.0053992 -0.0076101 0.023145 -0.024114 0.013353 0.046275 0.0068883 0.030845 0.013492 0 0.06208 -0.0087146 0.014849 -0.044644 -0.0087146 0.34453 0.048278 0.0063871 -0.010094 0.22468 0.0040793 0.0015255 -0.0096806 0.030169 0.015168 0.0070826 -0.034274 0.14316 -0.00097017 0.067948 0.0083351 -0.098418 0.0871 0.0086135 1.8538 -0.0030141 -0.15272 0.064225 -0.27924 0.11477 -0.0055375 0.10205 -0.34653 0.0080567 -0.33687 0.0097276 -0.057857 0.2958 -0.0095426 -0.068917 0.006109 0.0022193 0.0038854 -0.08413 0.17242 -0.3078 0.0062944 -0.010784 0.29279 0.036088 -0.022138 -0.0023553 -0.012438 0.19786 -0.003285 0.18268 -0.00040563 -0.012162 0.036512 -0.56545 -0.0049844 0.15816 -0.24216 -0.0038779 0.017124 -0.02311 0.00077415 -0.027261 0.0023581 -0.0042929 0.017824 0.17664 -0.0016629 0.0013868 0.0026357 -0.50349 0.38601 -0.0050544 -0.2781 0.0026693 -0.0062286 -0.0016629 0.013621 0.0098669 0.0012481 0.003191 0.012934 0.28914 -0.011484 -0.07168 0.40092 -0.0013858 0.36044 -0.023429 -0.00036626 0.0041632 0.003153 0.024127 0.0070826 -0.12979 -0.0015243 0.19132 0.084702 0.11946 0.0090312 Amplification Peak 23 - CN values Xq28 chrX:137796123-155270560(probes 1546542:1553795) chrX:148062378-148067556(probes 1551611:1551616) chrX:148062378-148075694(probes 1551611:1551619) 0.041079 0.041079 Actual Copy Change Given -0.024935 0.31819 2.3635 -0.086916 -0.0008316 -0.060345 -0.023977 0.080456 -0.082026 -0.22606 -0.015329 -0.04983 -0.14026 -0.014228 -0.005261 -0.12603 0.0091705 -0.10278 -0.1737 -0.085912 -0.050337 -0.020405 0.42738 -0.016841 -0.017837 0.50898 -0.042309 -0.088507 -0.18647 -0.0061139 -0.14555 0.31659 0.18571 -0.054286 -0.10009 -0.081605 0.47856 0.0093098 -0.053254 0.045176 0.0073609 -0.068529 3.6569 -0.0084385 0.00383 -0.038044 -0.023429 -0.020412 0.073115 -0.1316 -0.021365 -0.037626 -0.0059522 0.19412 -0.035721 -0.01849 -0.078011 -0.0088526 0.61444 -0.035495 0.18571 0.12719 0 -0.097435 -0.045364 -0.084356 -0.016429 -0.041974 0.014051 -0.033814 -0.0091286 -0.15733 0 -0.18848 0.0076392 -0.037136 -0.023456 -0.0080244 0.018523 -0.094693 -0.051544 -0.18277 -0.018216 -0.08559 -0.14285 0.12095 -0.061689 0.023005 -0.015466 0.0053299 -0.00027724 -0.097484 -0.0019399 0.12123 0.0094491 0.01433 0.041373 -0.01354 0.00097064 -0.0016629 0.058081 0.22715 0.0041632 -0.01441 0.0040578 -0.06574 -0.011198 -0.033753 -0.07361 0.00096473 -0.016017 -0.012024 -0.10726 0.64378 -0.060345 0.0042314 0 -0.017391 -0.022044 0.00069327 0.1936 0.053948 -0.023155 0 -0.078562 -0.0067353 0.0023581 0.021187 0.00097064 0.040103 -0.0048461 -0.0036011 -0.041702 0.0033693 -0.096968 -0.0085389 -0.074678 0.003191 -0.10684 0.30218 0.29437 0.001803 0.0033299 -0.12017 -0.037898 0.0038275 -0.013264 -0.0123 0.0072217 0.0049969 -0.048342 -0.00069303 0.0081959 -0.078943 -0.35476 0.018602 0.00048446 -0.015191 -0.1246 -0.061958 -0.0008316 -0.43333 0.047836 -0.032314 0 -0.041702 0.59494 0.023555 0.041458 -0.21776 -0.074811 0.025284 -0.039665 0.0043518 -0.019726 -0.0074997 -0.020687 -0.029721 -0.058866 0.00458 0.069956 -0.028299 0.0020805 -0.0044312 Deletion Peak 1 - CN values 1p36.11 chr1:26795113-27650365(probes 12604:12850) chr1:27101202-27222754(probes 12682:12719) chr1:1-31832772(probes 1:14914) 3.1088e-06 3.1088e-06 Actual Copy Change Given -0.41157 0.050534 0.47804 -0.078544 -0.038442 -0.3356 0 -0.18081 -0.48428 -0.65858 -0.096836 -0.14856 0.4519 -0.028081 0.012711 -0.0016629 -0.0012473 -0.66513 -0.70316 -0.27737 -0.31104 -0.29402 -0.087844 -0.33063 0.0034345 -0.35578 -0.065791 0.0077783 -0.428 -0.0077482 -0.53899 -0.032996 -0.010646 -0.0095426 -0.59753 0.00088607 -0.027671 -0.11423 -0.0031859 -0.0018014 -0.0035404 -0.37347 0.060508 -0.00097017 0.023286 0.0048579 0.0016082 -0.088848 -0.0066432 0.017963 0.0031984 -0.030404 -0.044551 -0.24126 -0.13255 -0.27308 -0.47512 0.0013868 -0.70854 0.010941 -0.01904 -0.2154 -0.19512 -0.46153 -0.17954 -0.40315 -0.030677 -0.20709 0.067375 -0.37943 -0.27021 -0.46014 0.016425 -0.0051227 -0.016567 -0.4287 -0.0022442 -0.57989 -0.10657 0.0077783 -0.00055444 -0.75668 0.0012481 -0.0051227 -0.32554 -0.2922 0.0033299 0 -0.038714 0.0050519 0 -0.26155 -0.044822 -0.030859 -0.0073339 0.0036076 -0.16569 0.0041632 -0.015604 0.029466 -0.046177 0.10462 0 0.024082 0.0068379 -0.0043498 -0.057979 0.0086321 -0.33479 0 0.00069327 0.0080567 -0.71069 0.19847 0.0068044 0.015046 -0.21218 -0.012713 -0.063287 -0.17056 -0.31319 -0.37887 0.012097 -0.24039 -0.0022168 -0.00046499 -0.12108 -0.081202 -0.042381 -0.42414 0.0027745 -0.027945 -0.23116 -0.0097063 -0.11493 0.038669 -0.44167 0.036886 -0.5351 -0.16064 -0.41058 -0.14361 0.10133 -0.52777 -0.402 -0.012082 -0.023018 -0.0098722 0.015587 0.01433 0.013772 0.00013863 -0.00069303 0.017824 0.097542 -0.25697 0.037287 -0.010827 -0.53713 0 0.0094491 -0.56922 -0.32635 -0.13291 -0.0059959 -0.62941 -0.66578 -0.51178 -0.0050286 -0.32914 -0.017803 0.013247 0.050923 0.0042129 -0.036674 -0.075782 0.015587 0.0023581 0.033408 -0.005814 0 -0.072887 -0.31354 -0.0072706 Deletion Peak 2 - CN values 2q14.3 chr2:1-243199373(probes 128609:259419) chr2:3380900-240337579(probes 129742:258210) chr2:3434287-3436123(probes 129771:129772) 0.2014 0.2014 Actual Copy Change Given 0.0037465 0.0095883 0.021463 0.089996 0.037641 -0.0015243 0.39165 0.23024 -0.0034627 -0.01263 0.02511 0.17211 0.37792 0.0020077 0.0013451 -0.0069195 0.022585 -0.0011087 0 0.00458 0.00045003 0.10804 -0.065716 0.0012481 0.0064919 -0.081987 -0.055022 0 -0.0076101 -0.0029091 -0.52353 0 0 0 -0.58531 -0.0076101 0 0.0024667 0.014051 0.23628 -0.033036 0.027686 -0.012576 0.0019418 0 0 -0.012942 0.0030522 -0.0038779 -0.011659 -0.001883 0.36493 0.012376 -0.018566 0 -0.013953 0.0049969 0.0026357 -0.66698 -0.014916 0.2858 -0.063032 -0.14085 0 0.0013468 0 0.028903 0.021323 0.0058309 0 0.0047429 0 0.022665 -0.27624 0.065226 0.0038302 -0.019341 -0.0040162 -0.0082336 0.041385 0.0013868 -0.00069303 -0.0023294 -0.02562 -0.30627 -0.24943 0.0048579 -0.005261 0.0069435 0.004774 0.00069327 -0.037966 0.095363 0 0.029184 -0.0020784 0.01285 0.0034687 0.0044411 0.0054139 0.42671 0.063223 0.0029797 -0.012482 -0.00044128 -0.17779 0.061365 0 0.042307 0.027021 0.097252 -0.0056757 -0.01354 0.42385 -0.0036888 -0.035109 0.24684 0.029044 -0.099459 0.14786 -0.0016629 0.0062481 0.010285 0.17845 0.033408 -0.0078403 -0.0069526 0.068239 0.041741 0.1451 0.00097064 -0.0011448 0.15159 0 0.1613 0.0071206 0.0083351 -0.0090486 -0.0084385 0 0 0 0.010842 -0.0042929 0.0056919 0.023227 0.008892 -0.00013862 0.00083195 0.0048579 0.12977 0.0033299 0.0019418 0.0051359 0.020343 -0.014969 0 0 0.03637 0.00069327 0.01433 -0.0060904 -7.2084e-05 0 0.020903 -0.0045695 0.032281 -0.014239 0.0083351 -0.30417 -0.0123 -3.2639e-05 -0.005261 0.0046297 0.0020805 0.0057928 0.066945 -0.001011 0 0.037359 0.15382 0.10226 0.020177 -0.0029091 Deletion Peak 3 - CN values 3p21.31 chr3:41286244-70019622(probes 282824:299282) chr3:49970625-50148208(probes 286928:286999) chr3:49997558-50169409(probes 286935:287008) 0.030662 0.030598 Actual Copy Change Given 0.0022193 -0.0013858 0.53169 -0.16631 -0.019964 0 0.00013863 -0.021784 0.0091705 -0.70974 -0.052261 -0.34125 0.06915 0.0024969 0.00097064 -0.53946 -0.028218 -0.012024 0.024408 -0.12966 -0.43745 -0.3105 -0.10079 -0.3112 -0.039155 0.011539 -0.38934 -0.35954 0 0.011539 0 -0.038442 -0.67939 -0.0014411 0.040772 0.0038854 -0.034495 0.013911 0.025812 0.32702 -0.085324 -0.016704 0.0020805 0.00097064 -0.0056757 0.0020805 -0.0026322 -0.12161 -0.038714 0 0.0013941 -0.010903 -0.26384 -0.014717 0.0054139 -0.22625 -0.48271 -0.013127 -0.31681 -0.11887 -0.29756 0 -0.19087 0.0020805 -0.012162 -0.60706 -0.041024 -0.0095847 -0.022332 -0.37494 -0.035448 -0.47649 0.024548 0 -0.011198 -0.40159 -0.086942 -0.0022168 -0.011887 0.067986 0.0039006 0.019363 0.0063871 -0.63394 0.022725 -0.42777 0.010564 0.0015255 -0.26444 -0.0076935 0 -0.1458 0.012655 -0.060345 0.010146 -0.062226 -0.20406 0.0033299 -0.0008316 -0.01106 -0.079476 -0.12525 -0.0019399 -0.029082 0.00031072 0.0058309 0.055943 -0.30587 -0.10395 0.0013868 0.0091257 -0.0037395 -0.68852 0.21085 0.0051359 -0.071273 -0.21528 -0.19149 0.014623 0.0098669 -0.00013862 -0.35396 -0.053881 -0.2128 -0.31211 0.0018492 -0.0047079 -0.21552 -0.013677 0.16646 -0.036644 -0.053476 -0.14605 -0.015152 -0.10579 -0.046952 0.01433 -0.039054 -0.0049844 0.15412 -0.21491 0.079015 0 0.0029133 -0.39263 0.042107 0.012376 0.0015255 -0.018765 0.0015255 -0.44102 0.00027728 0.0007779 0.0076392 -0.49597 -0.24021 0.002982 -0.10802 -0.050776 0.0041632 0 0.012376 -0.32182 -0.12834 0.0011093 0.010424 -0.034005 0.0031797 -0.054754 -0.017551 0.016599 -0.00050871 0.0041632 0.00060421 0.0075 0.0048198 0.072684 0.0037465 0.026935 -0.046583 -0.043952 -0.30364 -0.34527 -0.046854 Deletion Peak 4 - CN values 4q22.1 chr4:90844993-93240505(probes 415001:416146) chr4:91035787-92525194(probes 415048:415833) chr4:91747665-91750453(probes 415441:415442) 0.080507 0.080507 Actual Copy Change Given 0.0041632 -0.0066432 -0.00055444 -0.029721 -0.051046 -0.0033243 -0.040209 -0.013264 -0.0038779 0.0084192 -0.057654 -0.14881 -0.11443 -0.00027724 -0.0008316 0.013632 -0.00041585 -0.60526 -0.24703 0.018243 0.0028087 -0.087754 1.3251 -0.30557 -0.053375 -0.0033243 0.087322 0.0019765 0.068808 -0.0042929 0.0013219 0.94731 -0.021577 0.0097276 0.61356 0.0086135 1.4136 -0.029721 0.033127 -0.13814 0.020343 -0.34458 -0.0060904 -0.0018014 -0.00013862 0.00097064 -0.0037395 0.006427 -0.013402 -0.006505 0.00083931 0.0011899 -0.10959 -0.0079628 -0.12161 0.21822 -0.0024938 0.0036076 0.020763 0.011485 -0.11046 -0.15567 0.13984 -0.20174 0.0088344 -0.00037512 0 -0.20012 0 0.0040243 -0.005261 -0.0042929 -0.065716 0.0098669 -0.016841 -0.0036561 0.00033072 0 -0.019726 -0.18974 0.012016 -0.26312 0.0022193 0.017963 0.022585 0.18547 0.010703 0.0016642 -0.27129 -0.0061739 0.0015255 -0.12927 -0.007472 0.023354 -0.032041 0.0056919 0 0.0075 0 -0.062147 0.14295 -0.12317 -0.0022168 -0.016336 -0.0035677 -0.10788 -0.25986 -0.08911 0 0.00458 -0.0048461 0 0.0027745 -0.075612 0 0.027145 -0.029175 0 -0.0035872 -0.0030475 -0.0045695 -0.010784 0.021183 -0.20958 0.0012481 0 0.0081959 0.024412 -0.033405 0.00033566 0.00013863 0 0 -0.001762 -0.46099 0.0026735 0.026373 0.0072217 -0.0027707 -0.023703 -0.28285 -0.099472 0.0015255 -0.0030475 -0.25648 -0.076601 -0.22515 0 0.00041593 -0.0013858 -0.026851 0.001058 -0.00097017 0 -0.032587 0.00027728 0.0021491 -0.067458 -0.023703 0.0056919 -0.0073339 -0.010094 -0.0073339 -0.12959 -0.0024938 0.0060448 -0.05752 0.014737 0.0081959 0.052225 0.030451 0 0.0062481 -0.0021673 0.0070826 -0.073628 -0.14142 0.0058309 0.021323 -0.0076101 0.15009 0 0.011818 -0.005814 Deletion Peak 5 - CN values 4q34.3 chr4:151493422-191154276(probes 447791:467529) chr4:181521852-182082855(probes 464334:464337) chr4:174771787-188461870(probes 460573:467350) 0.027407 0.027407 Actual Copy Change Given 0.0041632 -0.0066432 -0.59166 -0.29319 -0.051046 -0.0033243 -0.040209 -0.017116 -0.52563 -0.0086312 -0.057654 -0.2939 -0.089302 -0.00027724 -0.0008316 0.0062481 -0.00041585 0.016286 -0.24703 0.018243 0.0028087 -0.087754 1.3436 -0.33491 -0.053375 -0.32583 -0.46998 0.0024772 0.06537 0.00055459 0.0013219 0.95201 -0.021577 0.0097276 0.61048 0.0055529 1.3974 -0.029721 0.043865 -0.13814 0.020343 -0.3463 -0.016429 -0.0018014 -0.00013862 0.00097064 -0.01565 0.006427 -0.010094 -0.015464 0.00083931 0.014888 -0.256 -0.0079628 -0.12161 0.2106 -0.0024938 0.0018351 0.020763 0.010822 -0.16811 -0.06142 0.13939 -0.20174 0.0086135 -0.00037512 0 -0.19762 0 0.0097276 -0.005261 -0.0042929 -0.068395 0.011818 -0.016841 -0.44063 0.00033072 0 -0.019726 -0.18974 0.003191 -0.78235 0.0022193 0.00069327 0.022585 0.090737 0.010703 0.0019418 -0.27129 -0.0061739 0.0015255 -0.12927 -0.007472 0.019783 -0.032041 0 0 0.0075 -0.02384 -0.062147 0.21039 -0.12317 -0.0022168 -0.14892 -0.0035677 -0.10788 -0.25986 -0.08911 0 0.00458 -0.0048461 -0.0081624 -0.0035767 -0.069064 0 0.027145 -0.052126 0 -0.0035872 -0.0030475 -0.35133 -0.013815 0.021183 -0.20958 0.0012481 0 0.0081959 0.024412 -0.033405 -0.0013622 0.00013863 0 0 -0.001762 -0.46099 0.0026735 0.0057439 -0.038578 -0.046583 -0.023703 -0.29471 -0.097627 0.0006034 -0.0030475 -0.25648 -0.076601 -0.24084 0 0.0029133 -0.0013858 -0.026851 0.0026357 0.00041593 -0.70424 -0.16466 0.0087528 0.0021491 0.025671 -0.52645 0.0056919 -0.0073339 0.00069327 -0.0071958 -0.12959 -0.0044312 0.016006 -0.05752 0.014737 0.0081959 0.052225 0.034484 0.0083686 0.0062481 -0.0021673 0.00027728 -0.074314 -0.14142 -0.0037395 0.021323 -0.0076101 0.1631 0.085135 -0.0026847 -0.014578 Deletion Peak 6 - CN values 5q14.2 chr5:66463055-89318315(probes 502956:515009) chr5:82372996-82655821(probes 511481:511631) chr5:50486544-110692711(probes 493561:525502) 0.0001774 0.0001774 Actual Copy Change Given 0.0090312 0.004719 -0.0071958 0.039304 -0.044686 0.045849 0.0016642 -0.046854 0 0.0019912 -0.060614 -0.18871 -0.36113 0.0029133 -0.019863 0.010564 0.0012481 -0.022469 0.019783 -0.28084 -0.47826 -0.084614 1.3729 0.017124 -0.046752 -0.31319 0.0017382 -0.36669 0.070243 0.0015255 0.54763 0.95816 0.60539 -0.00027724 0.59047 0.00027728 0.741 -0.00027724 -0.57318 -0.0088526 0.0075 0.041458 0 -0.0012473 0.010564 -0.00027724 -0.0056757 0.0091705 0.13303 -0.0029091 0.0037895 -0.45565 -0.26047 0.0055544 0.014609 0.21085 0.0040243 0.0011093 -0.70988 0.0097276 -0.4034 0.14726 0.14875 0.0083351 -0.057654 0.015349 0.022191 0.018244 -0.0018014 0.0019418 0.0019418 0.011978 -0.12434 0.035524 0.0086135 0.0057923 0.0038579 -0.0011087 0.064009 -0.6274 0 -0.77609 0.001803 0.010285 -0.31003 -0.26539 -0.052396 0.00069327 -0.26718 0.0033848 0.0016642 0.012376 0 0.022304 0 -0.062629 -0.11451 0.0086135 0.00055459 0.0056919 -0.022606 -0.21528 -0.00013862 0.027031 0.002808 0.0069435 -0.0036011 0.046054 -0.34939 0.00069327 0.0048579 0.0012481 0.0015255 -0.084395 -0.0008316 0.0085427 -0.044957 -0.018902 0.012111 0.0034687 -0.34145 0.013911 0.011818 0.19619 0.0065262 0.0030984 0.0086135 -0.060207 0.046559 -0.30509 -0.0015705 0.011121 -0.3511 0.00087137 0.22022 0.0029512 0.0095883 -0.00027724 0 -0.18609 -0.1651 -0.11404 0.00027728 0 0.01447 0.0082771 0.016425 -0.0040162 0.00067227 0 -0.086784 0.0033299 -0.00013862 -0.70064 -0.43007 -0.017666 0.0003458 -0.28192 -0.10893 0.0027745 0.0020805 -0.0067813 0.0093098 0.0037465 0.0086135 0.0022311 -0.01354 -0.31156 -0.014228 -0.064389 -0.45554 0.022338 0.001803 -0.0021673 0.0097276 0.0078794 -0.11391 -0.35442 -0.13851 0.00013863 -0.040122 -0.094141 -0.060748 0.003467 Deletion Peak 7 - CN values 6p25.2 chr6:1-19840198(probes 567572:580769) chr6:3151318-3233432(probes 569201:569237) chr6:1-25255276(probes 567572:584570) 0.00010152 0.0020078 Actual Copy Change Given -0.36031 -0.2978 -0.013677 -0.0011087 -0.029721 -0.35419 -0.0020784 0.12138 -0.50888 -0.70992 -0.063972 -0.28644 -0.14142 -0.0016629 -0.068663 -0.54087 -0.0053992 -0.68697 -0.54381 -0.2531 -0.03037 -0.08612 -0.12509 -0.0044312 -0.054184 0.0062481 -0.10085 -0.12108 -0.4341 0.0020805 -0.57521 -0.037459 0.60517 -5.4445e-05 -0.60563 -0.011611 -0.051046 -0.031905 -0.0040162 -0.0073789 -0.046177 -0.33687 -0.65398 0 -0.0069195 -0.0034627 -0.0069195 -0.15975 -0.01849 -0.61873 -0.048065 -0.53368 0.014888 -0.039741 -0.080541 -0.2292 -0.48586 0.0058309 -0.0048461 -0.13432 0.25832 -0.17259 -0.12564 -0.47971 -0.0044312 0.0079584 -0.14785 -0.21651 -0.15477 -0.00027724 -0.062361 -0.23459 0.024408 -0.6296 0.084787 -0.46082 -0.6127 -0.0078863 -0.02104 -0.28928 -0.37403 0.021884 -0.12746 -0.67187 -0.31365 -0.24483 -0.37042 -0.00069303 -0.17138 -0.0029927 0.0056919 0.0036076 -0.083333 -0.15362 -0.023155 -0.072007 0.40187 -0.23012 -0.030404 0.0012481 -0.076278 0 0.010564 -0.033312 -0.0042595 -0.084395 0.079735 -0.2916 -0.34481 -0.20423 -0.15822 -0.0030475 -0.021705 0.16565 0.0070826 -0.072075 -0.21392 -0.10762 0.0079315 -0.016567 0.0044411 -0.37504 0.001803 -0.22335 -0.31073 0.014376 -0.12265 -0.22317 0.0033299 -0.19745 -0.010183 0.011121 -1.2929 -0.0082047 -0.60899 -0.032277 -0.44997 0.0172 -0.57091 -0.18861 0.085943 -0.0031859 0.00041593 -0.54603 -0.34538 -0.0057333 0.010006 0.00013863 -0.019177 -0.0023553 -0.42375 -0.0091286 -0.00013862 -0.017803 -0.49214 0.20947 -0.049222 -0.053341 0.023312 -0.49715 -0.0033243 -0.48586 -0.0091286 0.0058309 0.0075 -0.65174 0.004719 0.021172 -0.068663 0.2861 -0.40252 -0.0049512 -0.43311 -0.0013362 -0.035176 -0.042063 -0.047395 -0.0019399 -0.30345 0.0080352 -0.20402 -0.081949 -0.60217 0.00458 Deletion Peak 8 - CN values 6p22.2 chr6:26187784-26235299(probes 585019:585043) chr6:26217729-26227267(probes 585039:585040) chr6:26125364-26911880(probes 584983:585234) 0.00045039 0.019818 Actual Copy Change Given -0.36031 -0.2978 -0.013677 -0.0011087 -0.029721 -0.35419 -0.0020784 0.11468 -0.50888 -0.71456 -0.063972 -0.28644 -0.12148 -0.0016629 -0.068663 -0.54087 -0.0053992 -0.68697 -0.54734 -0.2531 -0.03037 -0.08612 -0.12509 -0.0044312 -0.054184 0.0062481 -0.10374 -0.12108 -0.4341 0.0020805 -0.57521 -0.037459 0.60919 -5.4445e-05 -0.60563 -0.011611 -0.051046 -0.031905 -0.0040162 0 -0.046177 -0.33687 -0.64659 0 -0.0069195 -0.0034627 -0.0069195 -0.15975 -0.0206 -0.607 -0.048065 -0.53106 0.014888 -0.039741 -0.080541 -1.2929 1.3136 0.0058309 -0.0048461 -0.13432 0.30011 -0.17259 -0.12564 -0.15682 -0.0094046 0.0079584 -0.14785 -0.21651 -0.15477 -0.00072691 -0.062361 -0.22576 -0.061342 -0.63357 0.084787 -0.0054541 -0.6127 -0.0078863 -0.02104 -0.28928 -0.37403 0.021884 -0.12746 -0.012851 -0.31085 -0.23164 -0.37042 -0.00069303 -0.17138 -0.0029927 0.00013863 -0.18803 -0.083333 -0.15362 -0.023155 -0.024935 0.39104 -0.23012 -0.030404 0.0012481 -0.076278 0 0.010564 -0.033312 -0.0042595 -0.084395 -0.031026 -0.2916 -0.33906 -0.10579 -0.15822 -0.0030475 -0.021705 0.16565 0.0070826 -0.072075 -0.21342 -0.15032 0.0079315 -0.016567 0.0044411 0.0030522 0.001803 -0.22335 0.011679 -0.0020271 -0.12265 -0.23655 0.0033299 -0.19745 -0.00049467 0.011121 -0.27846 -0.0082047 -0.60899 -0.032277 -0.44997 0.0172 -0.57091 -0.18861 0.085943 -0.0031859 0.00041593 -0.53987 -0.34538 -0.0057333 0.010006 0.00013863 -0.019177 -0.0023553 -0.42375 0 -0.00041585 -0.017803 -1.0457 0.1945 -0.049222 -0.053341 0.023312 -0.49715 -0.0033243 -0.48586 -0.0091286 0.0058309 0.0075 -0.036674 0.004719 0.021172 -0.068663 0.2861 -0.40252 -0.0049512 -0.43311 -0.0013362 -0.035176 -0.042063 -0.047395 -0.0019399 -0.30345 0.0080352 -0.20402 -0.26836 -0.58706 0.00458 Deletion Peak 9 - CN values 6q25.3 chr6:64344861-171115067(probes 602275:663571) chr6:157096213-157713661(probes 656413:656668) chr6:157289854-157294518(probes 656541:656542) 0.11274 0.10903 Actual Copy Change Given -0.38609 -0.0041546 0 -0.089964 -0.081871 -0.3543 -0.42996 0.1114 -0.51537 -0.71823 -0.063972 -0.37974 -0.014228 0.0011093 -0.068663 -0.53804 -0.0053992 -0.66781 -0.55074 -0.28346 -0.03037 -0.10631 -0.12043 -0.0044312 -0.059033 -0.32658 -0.16569 -0.12115 -0.4386 0.0020805 -0.57521 -0.036496 0.60919 0.004367 -0.61891 -0.59789 -0.051046 -0.10314 -0.5974 0 -0.052531 -0.37651 -0.65557 0 -0.0069195 -0.0034627 -0.0020784 -0.15975 -0.0206 -0.62789 -0.048065 -0.50588 0.014888 -0.039741 -0.098738 -0.23496 0.010703 0.00069327 -0.04555 -0.13432 -0.56466 -0.20958 -0.27953 -0.48229 -0.40252 -0.62771 -0.14785 -0.21651 -0.15477 -0.3899 -0.062361 -0.50349 -0.066278 -0.62421 -0.10828 -0.0022718 -0.62123 -0.0078863 -0.019726 -0.051046 -0.36779 0.021884 -0.14245 -0.63803 -0.23361 -0.25611 -0.42194 -0.00069303 -0.27356 -0.0044733 0.00041593 -0.18803 -0.083333 -0.15362 -0.023155 0.0022193 -0.20767 -0.22871 -0.06719 0.0012481 -0.19475 0 0.010564 -0.033312 -0.0042595 -0.084395 -0.10092 0.098189 -0.33295 -0.19362 -0.21664 -0.37268 -0.027945 0.16565 -0.5853 -0.11293 -0.2154 -0.19237 -0.00034903 -0.024383 -0.013815 0.0056919 -0.12791 -0.22332 -0.31342 0.0047652 -0.12265 -0.23655 0.0097276 -0.20249 0.0038854 0.011121 -0.27846 -0.0064657 -0.61155 -0.032277 -0.44997 0.0172 -0.57591 -0.19187 -0.64321 -0.0031859 0.00041593 -0.54098 -0.34538 -0.0057333 0.010006 0.00013863 -0.037218 -0.0023553 -0.19325 0 -0.00041585 -0.019949 -0.48586 0.2216 -0.049222 -0.27129 -0.53287 -0.49214 -0.0033243 -0.00055444 -0.0091286 -0.092139 -0.015741 -0.6417 -0.017786 -0.49893 -0.068663 -0.36103 -0.40252 -0.0084916 -0.43789 -0.0016195 -0.039394 -0.0091665 -0.035721 -0.0019399 -0.30428 -0.031086 -0.20486 -0.26836 -0.5975 0.00458 Deletion Peak 10 - CN values 7q31.1 chr7:87826958-159138663(probes 708294:744561) chr7:110236682-111354928(probes 719426:719705) chr7:110535012-110544716(probes 719566:719567) 0.049388 0.23418 Actual Copy Change Given 0.11184 -0.00027724 0.5359 0.10994 0.035665 0.042224 0.013074 0.15233 0.0062481 0.0071667 0.066945 0.059689 -0.17044 0.0087528 0.21514 0.01419 0.0063871 0.011121 0.018103 0.022725 0.0018371 0.14295 1.3656 0.0024969 0.11136 0.34518 0.0096626 0.013213 -0.007472 0.12211 0.52817 0.9469 0.61317 0.0073609 0.015188 0.0024969 1.4345 0.022444 -0.0062286 0.36231 0.050108 0.037782 -0.065716 0.0033299 0.021603 0.0024969 0.022585 0.0098669 0.15876 0.0070053 -0.001794 0.41588 0.010982 0.017606 0.053379 1.0883 0.0055529 0.0020805 -0.01037 0.025812 -0.0089906 -0.27523 0.36969 0.0090312 0.0086135 0.023327 -0.16039 0.0041632 0.26718 0.0027745 0.015028 -0.00042851 0.018029 -0.69432 0.034536 -0.012217 -0.0021057 0.00013863 0.071822 -0.62751 0.0075 0.00069327 0.0029133 -0.001042 0.64304 0.010022 0.0079805 -0.0015243 -0.28001 0.0040793 0.018243 0.012546 0.11038 0.017264 0.025531 0.0011093 0.23836 -0.0015243 -0.0026322 -0.014067 0.11701 0.062223 0.010285 0.035196 0.00058804 0.0087528 -0.10276 -0.085085 -0.34274 -0.0011087 0 0.035947 0 -0.19662 0.00041593 0.19352 -0.22194 0.0083351 0.014255 -0.03771 0.21945 0.0091705 0.019503 0.20457 0 0.0015717 0.11852 -0.2374 0.019783 0.15344 -0.0022954 0.006109 0.17987 -0.07464 -0.01037 0.024446 0.021043 0.0026357 0.0040243 0.18722 -0.3551 0 0.0056919 0.0066653 0.021744 0.041541 0.26153 -0.0035929 0.0081959 0.021603 0.13273 0 0.00055459 -0.029599 0.29915 -0.23765 0.0025074 0.13125 0.090575 -0.49684 0 0 0.32543 -0.074329 0.023145 0.60557 0.083631 -0.0041658 0.023145 0.23332 0.021463 0.38324 0 0.031205 0.0040243 0.0057928 0.074552 0.00027728 -0.14361 0.04429 0.16971 0.099493 0 0.0015255 Deletion Peak 11 - CN values 7q36.1 chr7:104644244-159138663(probes 716228:744561) chr7:151755370-151768343(probes 741247:741248) chr7:125775978-159138663(probes 727415:744561) 0.017156 0.10554 Actual Copy Change Given 0.11184 -0.00027724 0.5359 -0.0043911 0.035665 0.049824 0.013074 0.15547 0.0062481 0.01651 0.066945 0.059689 1.4343 0.0087528 0.21514 0.01419 0.0063871 0.011121 0.018103 0.022725 0.0018371 0.14295 1.3938 0.0024969 0.054056 0.34518 0.0060441 0.013213 -0.007472 0.12211 0.52817 0.9469 0.61034 0.0073609 0.037803 0.0024969 1.4272 -0.039714 -0.0062286 0.36231 0.050108 0.037782 -0.089964 0.0033299 0.021603 0.0024969 -0.016979 0.0098669 0.15876 0.0070053 -0.001794 0.37035 0.010982 0.017606 0.053379 1.0883 -0.48502 0.013074 0.48871 0.025812 -0.54905 0.12786 0.36969 0.0090312 0.0086135 0.023327 -0.15822 0.0041632 0.26718 0.0027745 0.020763 0.00083195 0.018029 -0.71239 0.034536 -0.012217 -0.0021057 0.00013863 0.071822 -0.62751 0.001803 0.00069327 0.0029133 -0.001042 0.64304 0.010022 0.010285 0.0033299 -0.28001 0.0040793 0.018243 0.012546 0.11038 -0.027193 0.025531 0.0011093 0.23104 -0.0015243 -0.0026322 -0.014067 0.11701 0.062223 0.010285 0.035761 -0.013231 0.0087528 -0.10276 -0.085085 -0.34274 -0.0011087 0 0.035947 0 -0.61931 0.00041593 0.11208 -0.80352 0.0083351 0.014255 -0.03771 0.42318 0.0037465 0.019503 0.20457 0 0.0015717 0.11852 -0.2374 0.019783 0.15344 -0.0012473 0.006109 0.17987 -0.07464 -0.038442 0.024446 0.021043 0.0026357 0.0040243 0.18722 -0.37424 0 0.0056919 0.0066653 0.014051 0.041541 0.23969 -0.0035929 0.0081959 0.021603 0.13273 0 0.00055459 -0.021098 0.26137 0.20809 0.0025074 0.12079 0.023847 -0.49684 0 0 0.32543 -0.074329 0.023145 0.60557 0.083631 -0.0041658 0.023145 0.23332 0.021183 0.38324 0 0.031205 0.0040243 0.0057928 0.06308 -0.36125 -0.14361 0.04429 0.16971 0.099493 0 0.0015255 Deletion Peak 12 - CN values 8p21.3 chr8:1-37645465(probes 744562:766283) chr8:22203435-22978810(probes 756821:757177) chr8:12570390-25028670(probes 749581:758517) 0.050455 0.050573 Actual Copy Change Given 0.0015255 -0.29638 -0.60835 -0.17221 0.0023581 0.004719 -0.4214 0.1255 -0.17158 0.0035527 0.050392 0 -0.26516 0.0055529 0 0.0094491 -0.074811 0.0014535 -0.60564 -0.27069 -0.014194 -0.093271 0 -0.34435 0.0038511 -0.34044 -0.39513 -0.41135 -0.45404 -0.020001 -0.56957 0.027919 0.58375 -1.082 0.42606 -0.035721 -0.05442 -0.10329 -0.018018 -0.4097 -0.068395 0.037217 -0.65165 -0.00013862 0.0095883 0.012795 0.0040243 0.0087528 -0.024509 -0.61959 -0.050015 0.40227 -0.0055375 -0.038789 -0.1294 0.13421 -0.005261 -0.016429 -0.15706 0.011986 -0.57644 0.11067 0.14593 -0.48271 -0.39219 -0.014876 0.028763 0.020343 -0.16675 0.001803 0.045566 0.0094491 -0.14772 0.020483 -0.0097502 0.00022222 -0.60189 0.0023581 -0.097232 -0.63519 0.0095883 0.00098044 -0.14425 0.00458 -0.67866 -0.086031 -0.37019 0.0020805 -0.29177 -0.0097639 0.0013868 -0.15682 -0.063032 0.021884 0.037076 0.0015255 -0.43676 0.10848 -0.00063467 0.016065 -0.16001 0.11155 -0.0016629 0 -0.0050894 -0.038306 0.07815 -0.15964 0.17905 -0.12784 -0.0008316 0.0048579 -0.71479 -0.07067 -0.0020784 0 -0.48806 -0.19112 0.021758 -0.024251 -0.3386 -0.00027724 0 -0.69559 -0.31295 0.012702 0.033127 -0.21234 0.03637 0.22274 0 -0.058058 -0.6256 0.035141 0.21161 0.081361 -0.0020784 -0.028673 -0.58314 -0.19737 -0.48848 -0.40052 0.00013863 -0.55005 -0.26961 -0.045149 -0.24642 0.014379 -0.0025971 -0.00041585 -0.46153 -0.0023553 -0.0022168 -0.70818 0.0055529 -0.24655 -0.0075418 0.13598 -0.53632 -0.49465 -0.010784 -0.012576 -0.00097017 -0.10657 -0.011473 0.12285 0.65222 -0.51826 0.04812 -0.82305 0.014051 0.0015589 -0.011335 0.00060421 0.0081959 -0.00017662 -0.31867 -0.032314 -0.13858 -0.0094046 0.15278 0.11468 0.047126 0.0055529 Deletion Peak 13 - CN values 9p21.3 chr9:21959052-21977193(probes 839100:839101) chr9:21959052-21977193(probes 839100:839101) chr9:1-31852831(probes 825685:844647) 1.1756e-92 1.1756e-92 Actual Copy Change Given -0.87658 -0.0048461 -1.1382 -0.013402 0.0040243 -0.68469 -0.42189 -0.18131 -0.50588 -0.71215 0.016006 -0.88132 0.32844 -0.0071958 -0.53083 -1.0975 -0.036946 -0.62245 -0.80236 -0.57358 -0.46565 -0.70532 1.3699 -0.10163 -0.09436 -0.32635 -0.38319 -0.03245 -0.45864 0.017824 0.021118 -0.02603 -0.012851 0.0034687 0.046154 -0.58304 -1.2929 -0.1028 -1.1322 -1.2089 -0.0971 -0.13096 -0.6464 0.00041593 -0.0079568 -0.0024938 -0.67315 -0.27643 -0.020373 -0.60786 -0.021035 -0.50784 -0.53936 -0.53496 -0.17082 -1.2929 -0.46972 -0.11051 -1.2929 -0.27266 -1.2929 -1.2929 -0.2772 -0.47923 -0.79444 -0.61342 -0.48302 -0.23104 -0.15067 -0.74803 -0.57269 -0.47554 -0.13923 -0.69351 -0.044686 -0.87809 -1.1998 -1.1451 0.057939 -0.62131 -0.33214 0.021744 -0.28976 -0.6277 -0.27834 -0.11755 -0.85599 -0.0008316 -0.88511 -0.010729 -0.0016629 -0.22527 0.0015255 -0.070402 -0.023566 -0.04069 -0.16785 -0.49298 -0.053881 -0.010094 -0.84155 -0.13199 -0.00069303 -0.14648 -0.0064816 -0.72146 -0.16357 -0.66669 -0.34377 -0.076278 -0.45018 -0.36022 -0.72712 -0.10211 -0.008308 -0.10887 -0.79319 -0.16914 -0.10249 -0.060076 -0.33479 -0.36125 -0.13031 -0.33422 -0.64556 -0.0030014 -0.027124 -0.87634 0 -0.62756 -0.043737 -0.067993 -0.3567 -0.030591 -0.63083 -0.020238 -0.44739 -0.031359 -0.87463 -0.0067813 -1.2351 -0.45597 -0.052849 -0.47522 -0.72367 -0.068049 0.00083195 -0.0018014 -0.022881 0.0026357 -1.0524 -0.0015243 -0.0008316 -0.68852 -1.2187 -0.71051 -0.050246 -0.27917 -0.52798 -0.99799 -0.0031859 -0.50939 -0.63462 -0.13212 -0.0019399 -1.2487 -0.007472 -0.96653 -0.0033243 0.044558 -1.1109 -0.74749 -0.41959 -0.00078202 -0.097363 -0.00045383 -0.33954 -0.70469 -0.63925 -0.039937 -0.051316 -0.71164 -0.42287 -0.042517 Deletion Peak 14 - CN values 10p15.3 chr10:1-30405647(probes 893356:914183) chr10:1-1314217(probes 893356:893586) chr10:1-1314830(probes 893356:893588) 0.169 0.17225 Actual Copy Change Given -0.0010793 0 -0.0049844 -0.0071958 0.070099 -0.29508 -0.00069303 -0.046718 0.018006 -0.70122 0.033831 -0.1526 -0.22318 -0.01354 -0.034223 -0.55035 -0.029223 0.0079175 0.026092 -0.12634 0.00087134 0.12535 -0.10118 -0.0088526 -0.026064 -0.021217 0.010777 -0.34572 0.066658 0 -0.58176 -0.041397 0.59206 -0.013264 -0.59564 -0.57233 -0.04672 0.023286 0.010982 -0.031496 -0.011335 0.03369 0.01419 0.0077783 0.027076 -0.0020805 0.0056919 0.0030754 0.15681 0.014199 0 -0.46717 -0.042788 0.01509 0.065799 -0.90552 0.0049969 -0.005261 -0.71631 0.0075 -0.54895 -0.0069195 -0.04983 -0.256 -0.00027724 0.0079584 0.026514 0.19923 0.0029133 -0.027945 -0.28049 0.0079175 -0.065581 -0.6332 -0.0067813 -0.037408 -0.60441 0.0079175 0.023286 -0.28727 0.00041593 0.71107 -0.11299 -0.6578 -0.33825 0.049272 -0.0033243 0.0020805 0.00458 -0.0045148 -0.00013862 0.011425 -0.079984 -0.067993 -0.0049844 0.00097064 -0.17343 -0.0054359 -0.00055444 0.00027728 0.031155 0.025952 0 -0.019084 -0.00079818 0.0052749 -0.09578 0.0022809 -0.33998 0.0017058 -0.11011 -0.35988 0.0047914 0.1676 -0.034223 -0.040142 -0.2201 0.010842 -0.064495 0 -0.022606 -0.014228 -0.11835 -0.23765 0.0024969 -0.068752 0.055658 -0.2369 -0.018353 -0.21176 -0.0063668 -0.060211 0.052668 0.073299 0.18859 -0.10693 -0.015466 0 0.021183 -0.18081 -0.50006 0.0041632 -0.0012473 -0.52379 0 0.05845 -0.26793 0.0029133 -0.0045695 -0.007834 0.18192 -0.0034627 0 0.69372 0.17001 0.12889 -0.049493 0.030591 0.026373 0.00041593 0.0019859 0.0062481 0.0012481 0.0029133 -0.0008316 -0.012713 -0.70997 0.0049856 -0.065447 0.028044 -0.044822 -0.0059189 0.0062481 0.0050466 -0.12473 0 -0.088847 0.34437 -0.12694 -0.035176 -0.0091286 -0.35471 -0.0013858 0.0011093 Deletion Peak 15 - CN values 10q23.33 chr10:81244419-135534747(probes 940342:973857) chr10:95324504-95465475(probes 948796:948890) chr10:95326097-95610977(probes 948797:949010) 0.169 0.16716 Actual Copy Change Given 0 0 -0.0084385 0.060079 -0.071472 -0.29508 -0.0041311 -0.046718 0.020203 0.020147 0.033831 -0.1526 -0.27266 -0.08075 -0.034223 -0.54229 0.029044 0.010146 0.016006 -0.12634 0.0018371 0.12535 -0.10457 0 -0.026064 0 0.010777 0.042307 0.066658 0 -0.56808 -0.033818 0.59206 -0.013264 -0.60137 -0.56376 -0.037218 -0.044318 -0.59497 -0.031496 -0.011335 0.03369 0.0069051 0.0077783 0.027076 0.0033299 0.00069327 0.0030754 0.15681 0.024268 0.0034761 -0.46717 -0.042788 0.012204 0.065799 0.17679 0.0049969 -0.005261 0.010564 -0.060508 0 -0.0085766 -0.04983 -0.256 -0.00027724 0.0079584 0.026514 0.19923 -0.16125 -0.027945 0.19482 -0.47247 -0.065581 -0.6332 -0.0067813 -0.037408 0.017191 0.0079175 0.043127 -0.28727 0.00041593 0.71058 -0.018765 0.00458 -0.33825 -0.17148 -0.0033243 0.0020805 0 -0.0045148 -0.00013862 0.011958 0.012237 -0.067993 -0.0049844 0.00097064 -0.17343 0.0017731 0.0013921 -0.0045567 0.031155 0.025952 0 -0.06899 -0.00079818 0.0052749 -0.09578 0.0022809 -0.34228 0.0033299 -0.11011 -0.35293 0.0047914 -0.35726 -0.034223 -0.03579 -0.21453 0.010842 -0.064227 0 -0.3112 -0.36045 -0.11835 0.18193 -0.30569 -0.068752 0.055658 -0.16882 -0.018353 -0.21176 -0.0063668 0.0066653 -0.039482 0.073299 0.18859 0.0072597 0.39861 0 0.021183 0.14741 0.17513 -0.0024938 -0.0012473 0.0114 -0.0089658 -0.0093671 -0.22219 0.0029133 -0.0048129 -0.00041585 0.18192 -0.0019399 0 -0.028218 0.087942 0.12889 -0.062313 0.030591 0.026373 -0.0017315 0.0086135 0.0062481 0.0012481 0.0029133 0.0074468 -0.012713 -1.2929 0.0049856 -0.065447 -0.33958 -0.044822 -0.002045 0.0062481 0.0050466 -0.12473 0 -0.086916 -0.0019399 -0.12694 0.051672 -0.0091286 0.079795 -0.0013858 0.0011093 Deletion Peak 16 - CN values 11p15.4 chr11:1-13933964(probes 973858:982066) chr11:3815537-3847749(probes 974987:975003) chr11:1-8086986(probes 973858:977776) 0.022808 0.022185 Actual Copy Change Given 0.049824 0.089127 -0.010508 0 -0.042029 0.0019418 0.0013868 -0.016292 0.012097 0.0080016 -0.059538 0.055658 -0.082269 0.00083195 0.00083195 -0.55427 0.0034687 0 0.028341 -0.0058547 -0.00052035 -0.10105 -0.11657 -0.0012473 0.0091361 -0.0073339 -0.060276 0.012934 0.060508 -0.010232 -0.57026 -0.03286 -0.027398 0.00023493 -0.59788 0 -0.043703 -0.0011087 -0.5938 -0.097627 0 -0.0010781 0.03369 0 0.0012481 -0.0008316 -0.0042482 -0.25745 0.15054 0.011121 0.0016716 -0.48039 0.0068044 0.012159 -0.046177 -0.29898 0.0066653 0 0 -0.9421 -0.5293 0.17226 0.15144 -0.39908 0.003191 -0.021469 0.033549 -0.14772 -0.056173 -0.0029091 -0.079609 -0.48649 0.019363 0.015587 -0.01037 0.0063319 -0.00016602 0.0047624 -0.017391 0 -0.00041585 -0.36703 -0.00069303 0.00027728 0.030732 -0.26479 0.010982 0.0015255 0.00027728 -0.0025774 -0.0008316 0 -0.043059 0.011679 0.018943 0.00097064 0.050164 -0.00097017 0.0019418 -0.015466 0 -0.099341 0.001803 0.029843 0.00090611 -0.016939 -0.28311 -0.046929 0.043865 -0.00041585 0.0015255 0.0040243 -0.0015243 -0.063032 0.0026357 -0.11083 0.061508 0.21978 0.099302 -0.0041546 -0.13329 -0.012989 -0.1526 -0.25624 -0.30968 0.0036539 -0.10156 0.06237 -0.053611 0.15902 -0.01354 -0.013677 -0.3668 -0.0064657 0.19542 -0.050334 0 -0.0037395 0.010006 0.2442 -0.27559 0.044574 -0.00097017 0.0051359 -0.0015243 -0.027592 0 -0.0027707 0 -0.0018014 0.00097064 0.0063871 -0.00031811 -0.018216 -0.3424 0.079894 0.002982 0.14756 0.015727 0.0022193 0.0037465 -0.00055444 0.00069327 0.0040243 -0.022058 0.0011093 -0.69532 -0.50609 0.008892 0.56345 0.0094491 -0.002045 0.0038854 0.00018824 -0.00055444 0.0041251 0.0066653 0.001803 -0.13497 0.00458 -0.0098185 -0.093084 -0.018353 0.0062481 Deletion Peak 17 - CN values 12p13.1 chr12:3868507-22220975(probes 1052121:1062868) chr12:13712557-14136957(probes 1057754:1058120) chr12:3977959-22548548(probes 1052176:1063104) 0.0019175 0.0018838 Actual Copy Change Given -0.016567 -0.29071 0.49718 0.1616 -0.0123 -0.00055444 -0.094856 0.47718 0.023426 1.9048 0.025952 0.03214 -0.38828 -0.014778 0.00055459 -0.52951 0.046275 0.011261 -0.23741 0.023847 -0.4665 0.11462 1.2937 0.12477 0.042131 0.0015255 0.18533 -0.39464 -0.2781 -0.011708 0.53336 0.93305 0.58801 0.0047696 0.60524 0.0056919 0.71133 0.0043021 0.058367 -0.38033 -0.040752 0.023366 -0.64725 -0.0018014 0.0030522 -0.0075662 0.012655 0.0038854 0.33076 -0.59468 0.0056993 0.0098669 0.016705 0 0.08161 0.17795 -0.48044 -0.037762 -0.027945 0.023145 0.54753 0.118 0.15323 0.86433 -0.018353 0.0046788 -0.21602 -0.18055 -0.04567 -0.0027707 0.0016642 0.48975 -0.036538 -0.021784 -0.014778 -0.0055924 0.47543 -0.58559 0.069239 -0.029584 0.0036076 -0.76355 -0.10513 -0.61834 -0.65957 0.038929 -0.35923 -0.00055444 0.18283 -0.0036847 -0.00027724 0.0040243 -0.010232 -0.033269 0.041175 -0.0099565 0.22336 -0.00069303 0.0012481 -0.0089906 -0.10026 -0.0073339 -0.0010139 0.029561 0.018837 -0.37144 -0.39328 -0.097173 0.1431 -0.0037395 -0.049695 -0.0031859 0.00055459 0.69493 0.0087528 -0.034019 0.26388 0.036794 0.01616 0.0091705 0.011958 0.35332 -0.069332 -0.23545 0.0058309 -0.0034166 -0.048342 0.13614 -0.035721 -0.19994 -0.015329 0.0069435 0.59332 0.053847 -0.60502 -0.0014866 0.013074 -0.029448 -0.54653 0.1348 0.89668 0.018243 -0.0023553 0.022725 0.023987 -0.0026899 -0.0022168 0.00027728 0.00055459 0.020063 -0.1092 0.0011093 0.00055459 0.014749 -0.45219 0.090285 -0.035381 -0.060211 0.037641 -0.0045695 0.0016642 -0.60661 -0.0015243 -0.010784 -0.014641 0 -0.0029091 0.019631 -0.070135 0.057637 0.0026357 0.011991 0.0051359 -0.0024442 0.0049969 -0.0022454 0 0 0.031014 -0.0027707 -0.0013858 0.6285 0.044638 0.0058309 Deletion Peak 18 - CN values 12q24.33 chr12:72477654-133851895(probes 1089120:1124143) chr12:131436970-131626305(probes 1123520:1123655) chr12:75573001-133851895(probes 1090738:1124143) 0.0030251 0.0030638 Actual Copy Change Given -0.016567 -0.28928 -0.0411 -0.17398 -0.0123 -0.00055444 -0.0078863 0.098124 -0.49975 -0.70238 0.025952 0.018803 0 -0.085192 0.00055459 -0.015111 0.0073609 0.011261 -0.53652 -0.27977 -0.0024597 0.11462 1.2937 -0.33225 0.042131 0.0019418 0.18533 -0.39508 0.048115 -0.0091286 0.53336 0.93305 0.58919 0.0011093 0.60759 0.0056919 1.4243 0.0037465 -0.055581 -0.37567 -0.040752 0.027778 0.015447 -0.0018014 -0.0017173 -0.0019399 -0.0085766 0.0038854 0.33076 -0.5794 0.0056993 -0.075638 0.016705 0.012857 -0.11581 0.17795 -0.0042929 0.0044411 -0.69748 -0.25805 -0.56406 0.10964 -0.26733 -0.46089 -0.018353 0.013394 -0.090361 -0.20958 -0.078391 -0.0027263 0.0016642 -0.48745 -0.09318 -0.69595 0.00097418 0.0025806 -0.073503 -0.0045695 0.063795 -0.029584 0.0036076 -0.76355 -0.13393 -0.61777 -0.33935 -0.010906 -0.0023553 -0.00055444 -0.27965 -0.0036847 -0.00027724 0.0040243 -0.116 -0.033269 -0.0071958 -0.0099565 0.28096 -0.00069303 0.0012481 -0.015828 0.10118 -0.0073339 -0.00055444 0.0098304 0.018837 -0.39075 0 0.11894 -0.33144 -0.0037395 -0.049695 0.0012481 0.00055459 -0.10723 -0.0022168 -0.035382 0.25386 0.036794 0.015741 0.0091705 -0.32936 0.0069435 -0.14756 -0.22207 -0.30862 0.0033761 -0.048342 -0.198 -0.035721 -0.19994 -0.015329 0.0069435 -0.14926 -0.09482 0.013772 -0.072449 -0.46844 -0.0092934 0.023847 0.1348 -0.15988 -0.34939 -0.0023553 -0.52399 0 -0.0026899 -0.0022168 0.00027728 0.00055459 0.020063 -0.13626 -0.0026474 0.00055459 0.0023581 -0.51626 -0.27631 -0.035381 -0.082137 0.029628 -0.0045695 0.0016642 0.40427 0.0029133 -0.010784 -0.014641 0 0.016425 0.0045154 -0.070135 0.057637 0.0026357 0.011991 -0.0012473 -0.0024442 0.0049969 -0.0026702 0 0 0.023166 -0.0027707 -0.026036 -0.18365 0.045991 0.0056919 Deletion Peak 19 - CN values 14q11.2 chr14:1-107349540(probes 1180431:1229592) chr14:21145056-21676424(probes 1180843:1181099) chr14:21145056-23135762(probes 1180843:1181312) 0.11332 0.11332 Actual Copy Change Given -0.0040162 0.00013863 0.5095 -0.060345 0.0022193 -0.2991 0.011958 -0.0060904 0.017264 -0.70571 0.030451 0.1664 0.14667 -0.00013862 0.0043021 0.010564 0 0.0051885 0.023426 0.023734 0.010912 0.1385 1.379 -0.0026322 0.0060747 0.0027745 0.11561 -0.35954 -0.41586 0.012516 0.055591 0.99032 0.59458 -0.0098959 0.044483 -0.60051 1.4309 0.0024969 0.0030522 -0.79135 0.033972 0.036229 0.017264 0.0037465 -0.0021949 0.0033299 0.0079175 -0.0035234 0.14563 0.015727 0.0026431 0.3928 -0.17853 0.0093718 -0.12872 0.18192 -0.4846 -0.0011087 -0.0095426 -0.0037395 0.37068 -0.59302 -0.061017 0.010006 0.015866 0.23044 0.035242 0.030873 0.040468 0.0038854 -0.056846 0.015727 0.010564 0.015866 -0.0051227 -0.030321 0.0037191 0.0022193 0.12093 -0.27464 -0.0060904 -0.76561 0.00027728 0.0093098 0.10147 0.012392 -0.040209 -0.00041585 0.26702 0.0036945 0.0023581 -0.080541 0.0072217 0.019923 0.0027745 0.00013863 0.02685 -0.0041546 -0.0051227 -0.059538 0.24793 0.24887 0.00055459 0.034914 0.002808 0.0095883 0.11532 0.088612 0.064368 -0.019574 -0.00055444 -0.0045695 -0.0023979 -0.47289 0.00458 0.056013 -0.013677 -0.11926 0.057383 -0.0049844 -0.005261 -0.010508 0.00083195 0.19878 0.0016642 0.31487 -0.0065748 0.067666 -0.041702 -0.0063086 0.0013868 0.0080567 0.16835 -0.060845 -0.0084385 0.014089 0.0058309 -0.041295 0.016565 0.15846 0.17452 0.17513 -0.0016629 -0.52971 0.0062481 -0.0097381 -0.015191 0.00069327 -0.00027724 0.0029133 0.18995 0.00027728 0.0024969 -0.010646 -0.47236 -0.24545 0.00062313 0.11932 0.049966 -0.013815 -0.0012473 0.0019279 -0.0013858 0.0044411 -0.0011087 0.0090312 0.70345 -0.0098297 0.0055529 0.027763 0 -0.0012139 -0.41827 -8.9028e-05 -0.0047079 0.0073227 0.05466 -0.34916 0.025952 -0.054949 0.13415 -0.28823 0.015877 0.0038854 Deletion Peak 20 - CN values 15q15.1 chr15:1-89748703(probes 1229593:1266499) chr15:41976794-42493704(probes 1238570:1238857) chr15:41924473-42720100(probes 1238550:1238994) 0.13216 0.13606 Actual Copy Change Given 0.0027745 0.0091705 -0.024251 0.10235 0.0020805 0.011679 -0.20809 -0.018902 -0.46642 -0.014199 0 0.45734 -0.34595 0.00027728 -0.25079 -0.0049844 -0.029038 0.010842 0.028341 -0.27547 0.009344 0.13228 -0.092478 -0.0024938 -0.022777 -0.00013862 -0.57895 -0.0084385 0.057939 -0.0066432 0.54798 -0.03095 -0.01904 -0.0026322 -0.57069 0.0077783 -0.040177 -0.034904 -0.0059522 0.22515 0.0073609 -0.29296 0.084065 -0.0011087 -0.0029321 0.003191 0.029606 0.0011093 0.33901 -0.092478 -0.0011014 -0.46483 0.017544 0.013694 -0.12434 -0.31984 0.013353 -0.016017 -0.010784 0 -0.52301 -0.24265 -0.025209 -0.19036 -0.0096806 0.0085152 0.040609 -0.076278 -0.15349 0.0022193 -0.022332 0.022725 -0.031496 0.013353 -0.015466 -0.040806 -0.53482 0.0095883 0.15188 -0.27655 -0.0056757 -0.76757 -0.0020784 -0.013815 -0.67039 -0.25574 0 0.00055459 0.26923 0.0093649 -0.0013858 -0.0040162 -0.093535 -0.063032 -0.0105 -0.069408 -0.39381 0 0.006109 0.0041703 -0.024114 -0.068261 0.0015255 0.021979 -0.0021834 0 0.070678 -0.1002 0.044999 -0.0098185 0.0055529 0.0095883 0.0091705 0 -0.30874 0.033644 0.047268 -0.040248 -0.092332 -0.0076101 0.016845 -0.3659 -0.0019399 0.18283 -0.0040162 0.0025431 0.10023 -0.21527 -0.035176 -0.18315 0.0054139 0.010842 -0.10736 0.078479 -0.17322 -0.0020406 0 -0.053611 0.01085 0.003191 -0.60458 -0.35863 -0.0022168 0.023005 0.0036076 0.030111 -0.0033243 0.0034687 -0.0038779 -0.0013858 0.20335 -0.0031859 0.0013868 0.0077783 -0.11796 -0.012713 0.028551 -0.2775 0.094695 -0.0042929 -0.0008316 0.012237 0.033408 0.0012915 0.0036076 0.010766 0.019223 0.36246 0 -0.68789 -0.041702 -0.0074388 -0.020877 -0.0024442 0 0.0041251 -0.13458 0.00458 -0.1313 0.045282 -0.014366 -0.1035 0.035524 0.0071881 Deletion Peak 21 - CN values 16q23.1 chr16:78098006-79299841(probes 1306783:1307848) chr16:78129058-79247026(probes 1306814:1307819) chr16:78583258-78586506(probes 1307317:1307318) 0.076448 0.075047 Actual Copy Change Given -0.0012473 0.0019418 -0.012851 0.1388 0.00041593 -0.11848 0.038206 0.15248 0.026114 0.05062 0.016985 -0.041702 -0.23337 0.0011093 0.016286 -0.0040162 0.00013863 0.0038854 -0.52604 0.032281 0.009344 -0.28667 -0.10342 0.030451 0.011087 -0.0071958 0.214 -0.36805 0.069669 -0.0023553 -0.559 -0.034223 -0.028218 0 -0.57317 0.01447 -0.040752 0.0068067 -0.04482 -0.096572 -0.0092666 0.022444 0.032563 0.0037465 0.014749 -0.00041585 0 0.0032951 0.043157 0.02637 -0.003501 0.37397 -0.078943 0.022151 -0.1329 -0.92607 0.019923 -0.022606 -0.0049981 0.010564 0.37216 0.21192 0.16115 -0.45415 0.013074 0.015492 0.030982 0.012769 -0.0071958 0.0016642 -0.12707 0.019363 0.026935 -0.007472 -0.072942 0.021127 0.019055 -0.57664 0.055515 0.04812 -0.01354 -0.37245 -0.0029091 0.00055459 -0.30827 -0.27594 -0.0034627 0.0026357 -0.012989 0.0050519 0.0013868 0.046275 0.015308 0.020763 -0.0026322 0.071391 0.45333 -0.0016629 0.00097064 -0.017116 0.18162 -0.069466 0.0030522 0.023802 -0.0024604 -0.00055444 0.024268 0.21613 0.13569 0.068522 -0.0012473 0.020203 -0.67564 0.59807 0.014749 0.084713 0.054803 0.00083195 -0.055755 0.07254 0.012516 -0.0029091 0.0072217 0.1631 0.076279 0.0021267 -0.0047079 0.33594 0.00013863 0.092086 -0.00055444 0.0077783 0.19041 0.013392 0.161 0.00434 -0.017941 0.015727 0.032281 0.00013863 0.12108 0.10691 -0.005636 0.02806 -0.0038779 0.059734 -0.52849 0.0024969 0.019223 -0.014916 0.15771 0.0030522 -0.0037395 0.024969 0.22792 0.033325 0.0056216 0.13979 0.004719 -0.012438 0.0023581 0.021744 0.0098669 0.00458 0.0034687 0.0058309 0.014888 -0.016028 0.0077783 -0.05915 -0.03286 -0.005366 0.0029133 -0.0011283 0.00025685 -0.0017008 0.2087 0.010866 -0.12733 0.042024 0.17452 -0.076624 0.027919 -0.007472 Deletion Peak 22 - CN values 17p12 chr17:11866892-12456081(probes 1320150:1320517) chr17:11921739-12048275(probes 1320174:1320239) chr17:11721359-12366572(probes 1320063:1320462) 0.00086227 0.00089311 Actual Copy Change Given -0.049154 -0.2856 -0.049084 -0.0015243 0.034395 0.0091705 -0.41948 -0.060345 -0.48334 -0.6684 -0.17322 -0.42757 0.66512 -0.019177 -0.2514 -0.55076 -0.0036011 -0.68667 -0.52399 -0.2818 -0.39015 -0.31003 1.3452 0.10672 -0.055919 -0.34744 -0.39023 -0.4065 -0.43311 0.016933 0.55647 0.90543 0.57202 -0.010232 0.071556 -0.57348 1.4226 -0.048613 -0.62939 -0.38504 -0.014916 -0.00059101 -0.60719 0.00055459 0.0023581 0.00083195 -0.33063 -0.010922 -0.20074 -0.56992 -0.029714 -0.56296 -0.063166 -0.51337 0.010285 -0.18017 -0.47586 -0.12265 -0.021098 -0.22969 -1.2929 -1.2929 -0.2537 -0.46621 -0.39051 -0.59806 -0.13523 -0.1827 -0.038986 -0.0012473 0.013772 -0.47702 -0.072274 -0.0087146 -0.034631 -0.45012 -0.54443 0.0076392 -0.044551 -0.63547 -0.38638 0.036616 -0.049816 -0.65342 -0.32797 0.0083508 -0.40992 -0.0024938 -0.29355 -0.0042381 -0.0038779 -0.077345 -0.011473 -0.15221 -0.020824 -0.019177 -0.40092 -0.2474 -0.0049844 -0.02166 -0.16103 -0.073209 -0.00055444 -0.036717 0.001559 -0.37842 -0.20477 -0.19344 -0.34297 -0.053611 -0.12726 -0.00041585 0.0075 -0.49152 -0.55877 0.0082643 -0.21193 -0.046989 -0.34606 0.0086135 -0.31412 -0.37166 -0.039258 -0.24812 -0.022332 -0.12685 -0.11456 -0.011745 -0.13652 -0.23305 -0.027208 -0.032587 -0.3634 0.018843 -0.61987 0.00045374 -0.45886 -0.030131 -0.53531 -0.018584 0.06208 -0.34125 -0.00055444 -0.51043 -0.39286 -0.030461 -0.073743 -0.0020784 -0.010508 -0.0033243 -0.49663 -0.0029091 -0.0015243 0.038489 -0.54804 0.18192 0.0020103 -0.27392 -0.56595 -0.49965 -0.0087146 -0.57051 0.03031 -0.06187 -0.0062286 -0.6333 -0.62322 -0.0087259 -0.021921 -0.080023 -0.38638 -0.080908 -0.42626 -0.0018903 -0.042517 -0.014541 -0.19011 -0.35202 -0.17272 -0.03395 -0.042652 -0.30176 -0.6332 -0.010094 Deletion Peak 23 - CN values 17q22 chr17:55754312-57936913(probes 1338426:1339471) chr17:56426873-56498380(probes 1338842:1338877) chr17:49952859-81195210(probes 1334598:1351023) 1.3088e-08 1.3088e-08 Actual Copy Change Given -0.011887 -0.28477 -0.047936 -0.0015243 0.034395 0.0081959 -0.41773 -0.060345 0.043723 0.10535 -0.17322 0.22623 -0.37211 -0.019177 -0.040345 0.019363 -0.0036011 -0.67518 -0.52522 0.015866 -0.38075 -0.31061 1.3452 0.10672 0 -0.34182 0.019297 -0.40451 -0.43767 0.018383 0.52849 0.92249 0.57202 -0.015946 0.078316 -0.0047079 0.73019 -0.048613 0.096816 0.003191 -0.014916 0 -0.60719 0.00055459 0.0023581 0.00083195 0.021744 -0.010922 -0.020275 -0.58213 -0.029714 -0.52849 -0.063166 0.026857 0.010285 -0.18017 0.017824 -0.048681 -0.021098 -0.0010719 -0.04048 -0.48911 0.16355 -0.036674 -0.39308 -0.59572 -0.13523 -0.1827 -0.038986 -0.0012473 0.013772 0.018803 -0.072274 -0.0087146 -0.034631 0.0016091 -0.54967 0.0076392 -0.044551 0.047126 -0.0062286 0.036616 -0.049816 -0.63604 -0.31202 0.30792 -0.38156 -0.0024938 -0.29638 -0.0042381 -0.0038779 -0.077345 -0.011473 0.0094491 -0.020824 -0.019177 -0.39993 0.0012481 -0.0049844 0.00597 -0.16103 -0.073209 -0.00055444 -0.036717 0.001559 -0.016783 -0.27212 0.21214 -0.32007 -0.053611 -0.051223 -0.00041585 0.0075 0.30921 -0.56873 0.0082643 -0.21293 -0.046989 0.011414 0.0086135 -0.31412 -0.011473 -0.039258 -0.24812 -0.31412 -0.1335 0.026373 -0.011745 -0.031223 0.16301 -0.0027707 -0.032587 -0.36249 0.018843 -0.6146 0 0.0098669 -0.030131 -0.53906 -0.018584 0.06208 0.11257 -0.00055444 -0.51373 0.058367 -0.030461 -0.073743 -0.0020784 -0.010508 -0.0033243 -0.13076 -0.00069303 -0.0015243 -0.67904 -0.37504 0.18192 0.0020103 0.10935 -0.55517 -0.0083005 -0.0087146 0.021884 0.03031 -0.027945 -0.0062286 0.010006 0.10482 -0.0087259 -0.021921 -0.080023 -0.37369 -0.080908 -0.42386 -0.0018903 -0.042517 -0.014541 -0.18798 -0.0040162 -0.17272 -0.03395 -0.042652 -0.21597 -0.60622 -0.010094 Deletion Peak 24 - CN values 18p11.31 chr18:1-5145388(probes 1351024:1353432) chr18:2916039-3015918(probes 1351943:1352011) chr18:2966841-2972980(probes 1351978:1351979) 0.12313 0.12494 Actual Copy Change Given -0.0029091 -0.0123 0.53766 0.5062 -0.094064 0.018243 -0.0029091 0.020203 0.5062 -0.085377 -0.17639 0.11155 -0.36737 -0.11965 -0.021921 0.54436 0.012237 0.023426 -0.22244 -0.30921 0.015761 -0.032314 1.3552 0.0056919 -0.10752 0.0036076 -0.17998 0.016286 0.012655 0.0095883 0.00021248 0.94874 -0.015191 0.016705 0.014071 -0.052666 1.4383 -0.051586 0.020147 -0.37977 -0.088109 -0.36488 0.026935 -0.096968 -0.03504 -0.017116 -0.34366 -0.199 -0.19174 0.034677 -0.0087073 -0.06719 -0.26997 -0.54346 -0.12772 0.11286 0.0065262 -0.043195 0.060508 0.092025 1.2366 0.17196 0.15457 0.048546 0.032422 -0.62099 -0.067458 -0.093006 0.43716 -0.010922 -0.0019399 -0.46664 -0.0081624 0.030732 -0.17322 0.41741 0.022557 -0.00069303 -0.12486 -0.5793 -0.37617 -0.78429 -0.093535 -0.010922 0.89066 -0.30426 0.33707 0.00069327 -0.0088526 -0.018024 -0.0030475 0.19269 -0.10644 -0.13005 -0.024524 -0.029721 -0.050182 -0.15528 -0.017941 -0.056442 0.24684 -0.12421 0.0063871 -0.17276 -0.0068862 0.021043 -0.19487 -0.40446 0.46519 -0.15119 -0.18395 -0.0070576 0.029184 -0.44534 -0.5852 -0.011268 -0.080674 -0.08094 -0.29897 -0.019863 -0.01037 -0.01106 -0.1431 -0.25031 0.0026357 -0.058417 -0.19124 -0.19437 -0.061286 0.61778 -0.0076101 -0.047124 0.51037 -0.11544 0.20366 -0.13118 -0.45522 -0.024798 -0.59341 -0.031905 1.043 -0.35236 -0.12226 -0.011473 -0.02603 -0.14096 0.068522 -0.026304 -0.031359 0.027778 0.23272 -0.0051227 -0.027261 0.024548 0.088258 0.060794 0.016914 -0.26415 -0.57465 0.98101 -0.021098 0.027216 -0.0047079 -0.14515 -0.026441 0.16941 0 0.022713 -0.036265 3.2473 0.0014898 -0.022162 -0.42648 -0.0082511 -0.10289 -0.030441 -0.13484 0.0093098 -0.19187 -0.076145 -0.02603 -0.30787 0.015765 -0.048748 Deletion Peak 25 - CN values 18q21.2 chr18:48491525-48650073(probes 1377432:1377593) chr18:48491525-48616860(probes 1377432:1377587) chr18:35110153-78077248(probes 1369086:1393425) 3.0015e-33 3.0015e-33 Actual Copy Change Given -0.062898 -0.31541 -0.58726 -0.3503 -0.094064 -0.34975 -0.43246 -0.33722 -0.53053 -0.72547 -0.27679 -0.58892 0.61136 -0.13031 -0.27559 -0.55296 -0.10565 -0.67756 -1.1116 -0.31646 -0.36054 -0.30705 1.3552 0.0056919 -0.10752 -0.35432 -0.70392 -0.023508 -0.49131 0.0095883 0.00021248 0.94874 -0.015191 0.016705 -0.017762 -1.0613 1.4383 -0.051586 -0.57989 -0.97345 -0.088109 -0.36488 -1.1368 -0.096968 -0.03504 -0.032587 -0.62817 -0.199 -0.19174 -0.61409 -0.0087073 -0.51948 -0.26997 -0.55202 -0.12551 0.11286 -0.48806 -0.043195 -0.6836 -0.27272 -1.2929 -0.61719 0.15457 -0.47162 -0.44835 -0.61918 -0.10657 -0.41432 -0.24545 -0.013209 -0.29508 -0.46664 -0.26564 -0.69486 -0.17322 -0.69046 -0.60121 -0.59087 -0.12486 -0.96409 -0.73985 -0.76601 -0.093535 -0.64809 -0.30039 -0.29365 -0.34067 0.00069327 -0.0088526 -0.018024 -0.0030475 -0.23006 -0.10644 -0.13005 -0.024524 -0.050608 -0.42403 -0.15528 -0.017941 -0.056442 -0.29933 -0.12421 0.0063871 -0.17276 -0.0068862 -0.37437 -0.26412 -0.4776 -0.36424 -0.15119 -0.18395 -0.36703 -0.72765 -0.91236 -0.57763 -0.011268 -0.080674 -0.17319 -0.30744 -0.019863 -0.3519 -0.37358 -0.16001 -0.68788 -0.64987 -0.058417 -0.19124 -0.19437 -0.12317 -0.41878 -0.039122 -0.11679 -0.64057 -0.10994 -0.64377 -0.13118 -0.45522 -0.024798 -0.58696 -0.20299 -0.40212 -0.34985 -0.12226 -0.56495 -0.02603 -0.14096 -0.21478 -0.026304 -0.031359 -0.034495 -0.74673 -0.0051227 -0.027261 -1.201 -0.5163 0.060794 -0.069877 -0.68424 -0.96789 -0.4935 -0.021098 -0.95594 -0.0087146 -0.14515 -0.026441 -0.63632 -1.2929 -0.50661 -0.13574 -0.35481 -0.0060904 -0.022162 -0.43268 -0.0082511 -0.10289 -0.030441 -0.13484 -0.35133 -0.36725 -0.076145 -0.21509 -0.50407 0.10921 -0.048748 Deletion Peak 26 - CN values 19p13.3 chr19:1-7112175(probes 1393426:1395320) chr19:1390205-1501357(probes 1393626:1393649) chr19:1-6832100(probes 1393426:1395303) 0.0060878 0.063427 Actual Copy Change Given 0.049383 0.03214 -0.063032 0.13376 -0.0055375 0.0013868 -0.0041546 -0.078943 0.043157 -0.63466 0.024268 -0.22465 -0.16179 -0.012989 -0.034631 -0.5289 -0.0019399 -0.011749 -0.075478 0.0084743 -0.048039 0.11594 1.2889 -0.027261 -0.028388 -0.026851 -0.008641 -0.36295 -0.43333 0.0077783 0.0499 0.85462 -0.017666 -0.016429 0.15908 -0.55577 1.5281 0.0040243 -0.59614 -0.38493 0.024268 -0.018078 -0.56962 0.0019418 0.016006 -0.0053612 0.017404 -0.013953 -0.17411 -0.54744 0.00080446 0.27947 0 0.02433 0.01419 -0.17352 0.010564 0.0024969 -0.039529 -0.27739 0.3938 0.062223 -0.079476 -0.54027 0.010703 -0.059499 0.045282 0.043015 0.080168 -0.0016629 0.0072217 0.01433 -0.033132 -0.67985 0.041741 -0.022524 -0.024825 0.00597 0.10002 -0.29579 -0.042788 0.026092 0.004799 -0.032041 -0.021647 -0.052381 0.00055459 -0.0037395 -0.29378 0.0096435 0.0065262 -0.012438 0.0077783 -0.018676 -0.0030475 0.0011093 -0.10061 -0.046448 -0.02123 -0.029994 -0.26468 0.037641 -0.0048461 0.021839 -0.0016295 0.0038854 -0.2991 0.047473 0.17498 -0.0037395 -0.0049844 0.0011093 0.0052749 -0.22748 0.019363 0.046486 -0.1779 0.039902 0.028495 0.01433 0.034536 -0.0077482 -0.1259 0.11829 -0.0094046 -0.0032783 0 0.059512 -0.021647 -0.042324 0.0084743 -0.0013858 0.10687 0.072581 0.09188 0.00073109 -0.43745 0.015587 -0.49996 -0.1499 -0.136 -0.038578 -0.0044312 0.047978 0.0114 -0.015111 -0.25588 0.0026258 0.0020805 0.0027745 -0.41542 0.0019418 -0.0019399 -0.62035 -0.51702 -0.044551 -0.010578 -0.028819 -0.045499 0.0015255 0.0037465 0.014749 0.015168 -0.015466 0.00055459 0.013911 0.058224 -0.02522 -0.014916 -0.39909 0.021043 0.0087862 -0.41113 0.0023216 -0.047395 -0.023319 -0.040073 -0.0056757 -0.28703 -0.005261 0.17196 -0.30211 0.039054 -0.016567 Deletion Peak 27 - CN values 19p13.2 chr19:11040707-11207540(probes 1397049:1397113) chr19:11121185-11126087(probes 1397084:1397086) chr19:11065410-11207540(probes 1397055:1397113) 0.0063465 0.030598 Actual Copy Change Given -0.014366 0.03214 -0.063032 0.13376 -0.0055375 0.0013868 -0.00041585 -0.078943 0.043157 -0.63466 0.024268 -0.22465 -0.16179 -0.012989 -0.034631 -0.5289 -0.0019399 -0.011749 -0.075478 0.0084743 -0.011696 0.11594 1.2889 -0.027261 -0.028388 -0.026851 -0.008641 -0.35133 -0.036674 0.0039634 0.0499 0.85462 -0.017666 -0.016429 0.15908 -1.1743 1.5281 0.0040243 -0.59553 -0.38493 0.024268 -0.018078 0.081177 0.0019418 0.016006 -0.0053612 0.012516 -0.013953 -0.17411 -0.49694 0.00080446 0.27947 0 0.02433 0.01419 -0.21491 0.010564 0.0024969 -0.039529 0.13155 0.3938 0.062223 -0.079476 0.011261 0.010703 -0.059499 0.045282 0.043015 0.080168 -0.0016629 0.0072217 -0.44394 -0.033132 -0.65154 0.041741 -0.022524 -0.024825 0.00597 0.10002 -0.29579 -0.042788 0.023013 0.004799 -0.032041 -0.021647 -0.052381 0.00055459 -0.0037395 -0.29378 0.0096435 0.0065262 -0.012438 0.0077783 -0.018676 -0.0030475 0.0011093 -0.10061 -0.046448 -0.02123 -0.029994 0.26923 0.037641 -0.0048461 0.021839 -0.0016295 0.0038854 0.40144 0.047473 0.060794 -0.0037395 -0.0049844 0.0011093 0.0052749 -0.12992 0.019363 0.046486 -0.1779 0.039902 0.028495 0.01433 0.034536 -0.0077482 -0.1259 0.11829 -0.0094046 -0.0032783 0 0.059512 -0.029996 -0.042324 0.0084743 -0.0013858 0.10687 0.072581 0.09188 0.00073109 -0.00041585 0.015587 -0.49996 -0.1499 -0.136 -0.038578 -0.0044312 0.047978 0.0114 -0.015111 0.11184 0.0073609 0.0020805 0.0027745 -0.10329 0.0019418 -0.0019399 -1.2929 -0.51702 -0.044551 -0.010578 -0.028819 -0.045499 0.0015255 0.0037465 0.014749 0.015168 -0.015466 0.00055459 0.013911 0.058224 -0.02522 -0.014916 -0.29226 0.021043 0.0087862 0.0073609 0.0023216 -0.047395 -0.023319 -0.040073 -0.0056757 -0.28703 -0.005261 0.16219 -0.29196 0.039054 0.0019418 Deletion Peak 28 - CN values 19q13.33 chr19:46475664-59128983(probes 1412108:1417123) chr19:48550848-48627220(probes 1413000:1413051) chr19:47953987-50976533(probes 1412703:1413841) 0.035089 0.035879 Actual Copy Change Given -0.005814 -0.26637 0.92189 0.13376 -0.0055375 0.0058309 -0.00027724 0.36793 0.45343 -0.61051 0.020203 -0.20921 0.075128 -0.012989 -0.034631 -0.41449 -0.0019399 -0.011749 -0.05725 0.0040146 -0.011696 0.11594 1.2889 -0.027261 -0.028388 -0.026851 -0.0029737 -0.025756 -0.034359 0.0039634 0.0499 0.85601 -0.017666 -0.016429 0.15908 0.53432 0.66235 0 -0.020687 -0.046632 0.024268 -0.018078 0.10045 0.0019418 0.016006 0.0024969 0.012516 -0.013953 0.34762 0.055088 -0.0012399 0.27947 0 0.02433 -0.1329 -0.21491 -0.466 0.0049448 -0.039529 0.13155 0.37002 0.062223 -0.079476 0.011261 0.010703 -0.059499 0.045282 -0.20685 0.080168 -0.00097017 0.0072217 0.026654 -0.033132 0.59116 0.041741 -0.014145 0.53903 0.00069327 -0.04048 0.34518 0.32914 0.023013 0.003191 -0.032041 -0.021647 0.33369 0.00055459 -0.00013862 0.22268 0.0096435 0.0065262 -0.012438 0.0077783 0.13169 -0.0030475 0.01433 -0.10061 -0.005814 -0.0081624 0.014609 0.097833 0.037641 -0.0048461 0.021839 -0.0016295 -0.38078 -0.2862 0.047473 0.060794 -0.0037395 -0.0049844 -0.33918 -0.0080244 0.36379 0.019363 0.046486 -0.193 0.039902 0.028495 0.01433 -0.29189 -0.029448 -0.1259 0.52136 -0.0094046 -0.0032783 0 0.059512 0.21223 -0.034438 0.00041593 -0.0013858 0.10687 0.085551 0.10877 0.00073109 -0.43301 0.015587 0.035524 0.2523 -0.136 -0.029175 -0.0077482 0.047978 -0.0096806 0.017486 -0.028218 0.0073609 0.0020805 -0.0071958 -0.44264 0.0019418 -0.0019399 0.64799 0.22191 -0.044551 -0.010578 -0.023155 -0.045499 0.42738 0.0037465 0.014749 0.015168 0.047268 0.00055459 0.013911 0.057796 -0.02522 -0.014916 -0.36307 0.021043 0.0087862 -0.37144 0.0023216 -0.023018 -0.023319 -0.15771 -0.34676 0.18889 -0.005261 0.16219 0.098911 0.063223 0.0019418 Deletion Peak 29 - CN values 21q11.2 chr21:1-34398715(probes 1454142:1466168) chr21:1-15759667(probes 1454142:1454363) chr21:1-17319545(probes 1454142:1455312) 0.10872 0.10903 Actual Copy Change Given -0.029584 -0.0029091 -0.034128 0.13791 -0.019726 -0.0018014 -0.084528 -0.030677 0.00081955 -0.087367 -0.12069 -0.18093 -0.37831 -0.090626 -0.10079 -0.025756 -0.01037 -0.0033243 -0.24082 0.019223 -0.0042589 -0.29851 -0.13199 -0.0080244 0.03563 -0.32089 0.015697 0.0075 -0.065581 -0.015879 -0.066582 -0.04428 -0.038034 0.0095883 -0.60011 0.0041632 -0.091552 -0.068663 -0.58823 -0.39453 0.040892 0.0058309 0.00013863 -0.014366 -0.0098185 -0.0047079 0.00597 -0.0031859 -0.17765 -0.58225 0.0018104 -0.52624 -0.0027707 -0.1588 0.061937 -0.36906 -0.5349 -0.0040162 0.00041593 -0.13523 0.019783 -0.33975 -0.017666 0.008892 -0.40606 -0.024538 -0.083465 -0.39352 -0.14618 -0.018007 -0.0037395 -0.47617 -0.13161 -0.69974 -0.098945 -0.21768 -0.0034901 0.0033299 -0.11404 -0.61153 -0.018146 -0.77481 -0.007472 0.0094491 0.015028 -0.27797 -0.27428 -0.0048461 -0.59526 0.0050519 -0.0016629 0.22468 0.099142 0.0058309 -0.0085766 -0.070135 -0.19932 -0.0045695 -0.005261 -0.0071958 -0.28703 -0.10053 -0.0027707 0.017639 0.0033634 0.0079175 -0.20759 -0.10402 -0.15809 -0.0041546 -0.10933 0.0073609 0.0036076 -0.19937 -0.3432 -0.065918 -0.45308 -0.086916 -0.10577 -0.1316 0.0083351 -0.0070576 -0.14926 -0.32403 -0.30451 -0.0061826 -0.011198 -0.02411 0.026514 -0.031575 -0.0037395 -0.0087146 0.0097276 0.069279 -0.60593 -0.070366 -0.44739 0.013772 -1.1142 -0.18509 -0.63991 0.0041632 -0.0048461 0.013911 -0.38862 -0.10058 -0.021235 0.0080567 -0.012277 -0.0015243 -0.13755 -0.0047079 0.00013863 -0.047666 -0.59146 -0.025209 -0.0043307 -0.058596 -0.54128 -0.0026322 -0.0067813 -0.60129 -0.0055375 -0.045635 -0.015741 0.022444 0.0087528 0.018512 -0.019726 0 -0.016429 -0.0056425 -0.42713 -0.0021673 -0.046989 -0.021058 -0.033269 -0.0096806 -0.29284 -0.040582 -0.19124 0.08528 -0.15055 0.00055459 Deletion Peak 30 - CN values 22q13.31 chr22:43902280-51304566(probes 1487385:1491284) chr22:46535935-46643431(probes 1489208:1489261) chr22:43762358-51304566(probes 1487307:1491284) 0.00017878 0.022185 Actual Copy Change Given 0.027324 -0.019452 -0.053881 -0.17436 -0.050641 0.013965 0.0089805 -0.18484 -0.48872 -0.6609 -0.010232 -0.62903 0.54771 0.0075 -0.25527 -0.0034627 0.00027728 -0.00013862 -0.43853 0.015168 -0.0061946 -0.095516 -0.11495 -0.010094 -0.086419 -0.3535 -0.038777 -0.12421 -0.070536 -0.085324 -0.57925 -0.064374 -0.030131 -0.025483 0.081199 -0.57437 -0.049424 -0.011473 -0.039258 0.3633 0.026795 0.011121 -0.6215 -0.0063668 -0.0059522 -0.0030236 -0.080275 -0.25019 -0.0048461 -0.59468 -0.010363 0.3361 0.015866 -0.24174 -0.14194 0.017684 0.017544 0.012237 -0.72013 -0.0016629 -0.55086 -0.51784 -0.24338 -0.19224 -0.39753 0.015209 -0.17436 -0.22355 0.14013 0.0012481 -0.076812 -0.45672 0.034482 -0.015191 -0.077878 0.00091556 0.035073 0.016006 -0.10618 0.047694 -0.39386 0.042166 -0.0026322 -0.035176 0 0.012392 -0.35829 -0.006505 0.20167 -0.0035463 -0.0015243 -0.032041 -0.052126 -0.047395 -0.037762 -0.0016629 -0.40992 -0.015466 -0.071071 -0.010646 -0.51579 -0.033814 -0.0008316 -0.0095869 -0.0063335 -0.0042929 -0.24059 -0.1145 -0.2217 0.00597 -0.10985 0.019783 -0.66763 -0.35213 -0.5795 -0.034973 -0.55136 -0.020984 -0.096427 0.001803 0.037782 -0.39118 -0.01849 -0.26709 -0.0047433 -9.2462e-05 -0.014228 0.040189 -0.13057 0.15658 0.0011093 -0.03286 -0.36635 0.0074004 -0.60827 0.009487 -0.010922 -0.0038779 -0.55597 -0.37606 -0.27488 -0.34274 -0.0037395 0.037217 -0.26155 -0.091872 -0.0067813 0.00027728 -0.00069303 -0.0070576 -0.43799 -0.0016629 -0.00097017 -0.66504 0.31635 -0.0022711 -0.0091984 -0.073343 -0.15631 -0.49642 -0.0041546 0.030591 0.33124 -0.13523 -0.0036011 -0.012851 0.045282 -0.51023 -0.0108 -0.044295 -0.60893 -0.0028758 -0.020549 0.006576 -0.037082 -0.0122 0.011818 -0.35156 -0.12694 0.05466 -0.1955 0.066861 -0.60313 -0.030875 Deletion Peak 31 - CN values 22q13.32 chr22:43902280-51304566(probes 1487385:1491284) chr22:49330724-51304566(probes 1491284:1491284) chr22:43762358-51304566(probes 1487307:1491284) 0.0001774 0.075047 Actual Copy Change Given 0.042024 -0.024935 -0.053881 -0.17436 -0.050641 0.013965 0.022725 -0.18484 -0.52788 -0.79539 -0.010232 -0.65919 0.54771 0.0075 -0.014778 -0.0034627 0.00027728 -0.00013862 -0.43853 0.015168 -0.0061946 -0.095516 -0.11495 -0.0098185 -0.086419 -0.3535 -0.038777 -0.16942 -0.5432 -0.085324 -0.57925 -0.094988 -0.030131 -0.025483 0.081199 -0.57437 -0.049424 -0.011473 -0.039258 -0.01409 0.026795 0.011121 -0.6215 -0.0063668 -0.0059522 -0.0030236 -0.080275 -0.25019 -0.0048461 -0.59468 -0.010363 0.3361 0.015866 -0.24174 -0.14194 0.017684 0.017544 0.012237 -0.72013 -0.0016629 -0.55086 -0.51784 -0.24338 -0.19224 -0.39753 0.015209 -0.17436 -0.22355 0.14013 0.0012481 -0.076812 -0.45672 -0.0023553 -0.015191 -0.077878 0.00091556 0.035073 0.016006 -0.10618 0.047694 -0.42407 0.042166 -0.012162 -0.035176 0 0.012392 -0.39619 -0.006505 0.20167 -0.0035463 -0.0015243 -0.032041 -0.052126 -0.047395 -0.037762 -0.0016629 -0.40992 -0.043331 -0.071071 -0.010646 -0.51579 -0.033814 -0.0008316 -0.0095869 -0.0063335 -0.0042929 -0.24059 -0.1145 -0.2217 0.00597 -0.10985 0.019783 -0.66763 -0.35213 -0.5795 -0.034973 -0.13613 -0.020984 -0.10551 0.001803 0.037782 -0.39118 -0.01849 -0.26925 0.047552 -9.2462e-05 -0.014228 0.040189 -0.13057 0.15658 0.0011093 -0.03286 -0.36635 0.0074004 -0.60827 0.009487 -0.010922 -0.0038779 -0.55597 -0.37606 -0.27488 -0.34274 -0.0037395 0.037217 -0.26155 -0.091872 -0.0067813 0.00027728 -0.00069303 -0.0070576 -0.43799 -0.0016629 -0.00097017 -0.66504 0.29596 -0.0022711 -0.0091984 -0.073343 -0.15631 -0.49642 -0.0041546 0.030591 0.33124 -0.13523 -0.0036011 -0.012851 0.045282 0.42501 -0.0108 -0.044295 -0.60893 -0.0028758 -0.020549 0.006576 -0.037082 -0.0122 -0.25781 -0.35156 -0.12694 0.05466 -0.1955 0.066861 -0.60313 -0.030875 Deletion Peak 32 - CN values Xp21.1 chrX:30870233-32611359(probes 1503610:1504576) chrX:30870233-34033668(probes 1503610:1504832) chrX:32057877-32062998(probes 1504222:1504223) 0.079916 0.075047 Actual Copy Change Given -0.024935 -0.23472 -0.0696 0.25385 -0.0008316 -0.060345 -0.023977 0.033267 -0.068395 -0.20776 -0.015329 -0.04983 0.022304 -0.014228 -0.005261 -0.12603 0.0091705 -0.097759 -0.1737 -0.085912 -0.050337 0 0.4502 -0.016841 -0.017837 -0.11139 -0.043021 -0.083333 0.1643 0.0050053 -0.1371 0.31097 0.16115 -0.048291 -1.2929 -0.081605 0.46144 0.0093098 -0.032587 0.064775 -0.046781 -0.068529 -0.10617 -0.013264 -0.036265 -0.012576 -0.017803 -0.043331 0.073115 -0.1316 0.011407 -0.037626 -0.041567 -0.4018 -0.035721 -0.012303 -0.071739 -0.0088526 -0.019452 -0.040995 -0.10211 -0.23435 0 -0.078411 -0.050641 -0.084091 -0.016429 -0.05496 0.014051 -0.033814 -0.0091286 -0.14232 -0.078411 -0.1968 0.0076392 -0.037136 -0.023456 -0.0080244 0.018943 -0.078411 -0.043602 -0.17929 -0.018216 -0.069466 -0.094856 -0.17574 -0.061689 0.0067875 -0.012024 0.0053299 0.0033299 0.10848 -0.0019399 -0.25387 0.0086135 -0.015329 0.041373 -0.01354 0.00097064 -0.011473 -0.021784 -0.27703 0.0041632 -0.012344 0 -0.04726 -0.0015243 0.091654 -0.07361 -0.0010079 -0.017947 -0.012713 -0.1025 -0.44275 -0.060345 0.0042314 0.034536 -0.0088526 -0.022044 0.00069327 -0.098814 0.048404 -0.038442 0 -0.074811 -0.0067353 0.0062481 0 0.00097064 0.03734 -0.0048461 -0.0036011 -0.041702 0.0033693 -0.096968 -0.0085389 -0.074678 0.003191 -0.085059 -0.33272 -0.58196 -0.00027724 0.0033299 -0.12017 -0.036401 0 -0.013264 0.0056919 -0.0016629 0.0049969 -0.06424 -0.00069303 0.00083195 -0.08094 0.37677 0.023566 -0.0057457 0.028903 -0.13052 -0.061958 0.0050301 -0.42156 0.068031 -0.032314 0 -0.041702 -0.67554 0.014458 -0.10893 0.33721 -0.061823 0.025284 -0.057924 0.0043518 -0.019726 -0.0028086 -0.015191 -0.03885 -0.058866 0.00458 0.052668 -0.028299 -0.1595 -0.0044312 Deletion Peak 33 - CN values Xq11.2 chrX:62570171-64136373(probes 1514725:1515336) chrX:63397172-63451875(probes 1515019:1515031) chrX:63013923-63460901(probes 1514883:1515036) 0.19346 0.2014 Actual Copy Change Given -0.024935 -0.23472 -0.0696 -0.085855 -0.0008316 -0.060345 -0.023977 0.033267 -0.068395 -0.20776 -0.015329 -0.04983 0.023987 -0.014228 -0.005261 -0.12603 0.0091705 -0.097759 -0.1737 -0.085912 -0.050337 0 0.4736 -0.016841 -0.017837 -0.11139 -0.043021 -0.083333 0.13969 0.0050053 -0.14555 0.31097 0.18313 -0.054286 -0.086101 -0.081605 0.48165 0.0093098 -0.053254 0.064775 0.0073609 -0.068529 -0.11352 -0.013264 0.012978 -0.021111 -0.017803 -0.03749 0.073115 -0.1316 0.011407 -0.037626 0.017264 0.19412 -0.035721 -0.012303 -0.078011 -0.0088526 -0.019452 -0.045499 -1.2929 0.09072 0 -0.078411 -0.050641 -0.090851 -0.016429 -0.72155 0.014051 -0.033814 -0.0091286 -0.14232 0 -0.1968 0.0076392 -0.037136 -0.023456 -0.0080244 0.018943 -0.078411 -0.043602 -0.17929 -0.018216 -0.08559 -0.10936 -0.17574 -0.061689 -0.0007305 -0.012024 0.0053299 0.0033299 -0.020001 -0.0019399 0.094637 0.0086135 -0.015329 0.041373 -0.01354 0.00097064 -0.0016629 -0.021784 0.17747 0.0041632 -0.012344 0 -0.04726 -0.017941 0.0075618 -0.07361 0.011003 -0.017947 -0.012713 -0.1025 -0.44275 -0.060345 0.0042314 -0.91146 -0.0088526 -0.022044 0.00069327 -0.098814 0.048404 -0.038442 0 -0.074811 -0.0067353 0.0062481 0 0.00097064 0.040103 -0.0048461 -0.0036011 -0.041702 0.0033693 -0.096968 -0.0085389 -0.074678 0.003191 -0.085059 0.28097 0.29204 -0.0054722 0.0033299 -0.12017 -0.06719 0 -0.0073339 0.0056919 -0.0016629 0.0049969 -0.07548 -0.00069303 0.00083195 -0.095384 -0.35476 0.023566 -0.0057457 -0.014047 -0.13052 -0.061958 0.0050301 0.23349 0.068031 -0.032314 0 -0.041702 0.60322 -0.019429 0.041458 -0.21776 -0.061823 0.025284 -0.065581 0.0043518 -0.019726 -0.0074997 -0.012989 -0.03885 -0.058866 0.00458 0.052668 -0.028299 -0.1595 -0.0044312