Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold TCGA-P7-A5NY-01A-12D-A35C-01 TCGA-P8-A5KC-01A-11D-A35C-01 TCGA-P8-A5KD-01A-11D-A35C-01 TCGA-P8-A6RX-01A-11D-A35C-01 TCGA-P8-A6RY-01A-12D-A35C-01 TCGA-PR-A5PF-01A-11D-A35C-01 TCGA-PR-A5PG-01A-11D-A35C-01 TCGA-PR-A5PH-01A-11D-A35C-01 TCGA-QR-A6GO-01A-11D-A35C-01 TCGA-QR-A6GR-01A-11D-A35C-01 TCGA-QR-A6GS-01A-11D-A35C-01 TCGA-QR-A6GT-01A-11D-A35C-01 TCGA-QR-A6GU-01A-11D-A35C-01 TCGA-QR-A6GX-01A-11D-A35C-01 TCGA-QR-A6GY-01A-11D-A35C-01 TCGA-QR-A6GZ-01A-11D-A35C-01 TCGA-QR-A6H0-01A-11D-A35C-01 TCGA-QR-A6H1-01A-11D-A35C-01 TCGA-QR-A6H2-01A-11D-A35C-01 TCGA-QR-A6H3-01A-11D-A35C-01 TCGA-QR-A6H5-01A-11D-A35C-01 TCGA-QR-A6H6-01A-11D-A35C-01 TCGA-QR-A700-01A-11D-A35C-01 TCGA-QR-A702-01A-11D-A35C-01 TCGA-QR-A706-01A-11D-A35C-01 TCGA-QR-A70C-01A-21D-A35C-01 TCGA-QR-A70D-01A-11D-A35C-01 TCGA-QR-A70E-01A-11D-A35C-01 TCGA-QR-A70G-01B-11D-A35C-01 TCGA-QR-A70H-01A-12D-A35C-01 TCGA-QR-A70I-01A-11D-A35C-01 TCGA-QR-A70J-01A-11D-A35C-01 TCGA-QR-A70K-01A-12D-A35C-01 TCGA-QR-A70N-01A-12D-A35C-01 TCGA-QR-A70P-01A-11D-A35C-01 TCGA-QR-A70R-01A-11D-A35C-01 TCGA-QR-A70W-01A-12D-A35C-01 TCGA-QR-A70X-01A-11D-A35C-01 TCGA-QR-A7IN-01A-11D-A35C-01 TCGA-QR-A7IP-01A-11D-A35C-01 TCGA-QT-A5XJ-01A-11D-A35C-01 TCGA-QT-A5XK-01A-11D-A35C-01 TCGA-QT-A5XL-01A-11D-A35C-01 TCGA-QT-A5XM-01A-11D-A35C-01 TCGA-QT-A5XN-01A-11D-A35C-01 TCGA-QT-A5XO-01A-11D-A35C-01 TCGA-QT-A5XP-01A-11D-A35C-01 TCGA-QT-A69Q-01A-11D-A35C-01 TCGA-QT-A7U0-01A-11D-A35C-01 TCGA-RM-A68T-01A-11D-A35C-01 TCGA-RM-A68W-01A-11D-A35C-01 TCGA-RT-A6Y9-01A-12D-A35C-01 TCGA-RT-A6YA-01A-12D-A35C-01 TCGA-RT-A6YC-01A-12D-A35C-01 TCGA-RW-A67V-01A-11D-A35C-01 TCGA-RW-A67W-01A-11D-A35C-01 TCGA-RW-A67X-01A-11D-A35C-01 TCGA-RW-A67Y-01A-11D-A35C-01 TCGA-RW-A680-01A-11D-A35C-01 TCGA-RW-A681-01A-11D-A35C-01 TCGA-RW-A684-01A-12D-A35C-01 TCGA-RW-A685-01A-11D-A35C-01 TCGA-RW-A686-01A-11D-A35C-01 TCGA-RW-A688-01A-11D-A35C-01 TCGA-RW-A689-01A-11D-A35C-01 TCGA-RW-A68A-01A-11D-A35C-01 TCGA-RW-A68B-01A-11D-A35C-01 TCGA-RW-A68C-01A-11D-A35C-01 TCGA-RW-A68D-01A-11D-A35C-01 TCGA-RW-A68F-01A-11D-A35C-01 TCGA-RW-A68G-01A-11D-A35C-01 TCGA-RW-A7CZ-01A-11D-A35C-01 TCGA-RW-A7D0-01A-11D-A35C-01 TCGA-RW-A8AZ-01A-11D-A35C-01 TCGA-RX-A8JQ-01A-11D-A35C-01 TCGA-S7-A7WL-01A-11D-A35H-01 TCGA-S7-A7WM-01A-12D-A35H-01 TCGA-S7-A7WN-01A-12D-A35H-01 TCGA-S7-A7WO-01A-11D-A35H-01 TCGA-S7-A7WP-01A-11D-A35H-01 TCGA-S7-A7WQ-01A-12D-A35H-01 TCGA-S7-A7WR-01A-11D-A35H-01 TCGA-S7-A7WT-01A-12D-A35H-01 TCGA-S7-A7WU-01A-11D-A35H-01 TCGA-S7-A7WV-01A-11D-A35H-01 TCGA-S7-A7WW-01A-11D-A35H-01 TCGA-S7-A7WX-01A-11D-A35H-01 TCGA-S7-A7X0-01A-12D-A35H-01 TCGA-S7-A7X1-01A-11D-A35H-01 TCGA-S7-A7X2-01A-12D-A35H-01 TCGA-SA-A6C2-01A-11D-A35H-01 TCGA-SP-A6QC-01A-11D-A35H-01 TCGA-SP-A6QD-01A-12D-A35H-01 TCGA-SP-A6QF-01A-12D-A35H-01 TCGA-SP-A6QG-01A-12D-A35H-01 TCGA-SP-A6QI-01A-12D-A35H-01 TCGA-SP-A6QJ-01A-11D-A35H-01 TCGA-SP-A6QK-01A-11D-A35H-01 TCGA-SQ-A6I4-01A-11D-A35H-01 TCGA-SQ-A6I6-01A-11D-A35H-01 TCGA-SR-A6MP-01A-11D-A35H-01 TCGA-SR-A6MQ-01A-11D-A35H-01 TCGA-SR-A6MS-01A-11D-A35H-01 TCGA-SR-A6MT-01A-11D-A35H-01 TCGA-SR-A6MU-01A-11D-A35H-01 TCGA-SR-A6MV-01A-11D-A35H-01 TCGA-SR-A6MX-01A-11D-A35H-01 TCGA-SR-A6MY-01A-11D-A35H-01 TCGA-SR-A6MZ-01A-11D-A35H-01 TCGA-SR-A6N0-01A-11D-A35H-01 TCGA-TT-A6YJ-01A-11D-A35H-01 TCGA-TT-A6YK-01A-11D-A35H-01 TCGA-TT-A6YN-01A-12D-A35H-01 TCGA-TT-A6YO-01A-11D-A35H-01 TCGA-TT-A6YP-01A-21D-A35H-01 TCGA-W2-A7H5-01B-11D-A35H-01 TCGA-W2-A7H7-01A-11D-A35H-01 TCGA-W2-A7HA-01B-11D-A35H-01 TCGA-W2-A7HB-01A-11D-A35H-01 TCGA-W2-A7HC-01A-11D-A35H-01 TCGA-W2-A7HD-01A-11D-A35H-01 TCGA-W2-A7HE-01A-11D-A35H-01 TCGA-W2-A7HF-01A-11D-A35H-01 TCGA-W2-A7HH-01A-11D-A35H-01 TCGA-W2-A7UY-01A-11D-A35H-01 TCGA-WB-A80K-01A-11D-A35H-01 TCGA-WB-A80L-01A-11D-A35H-01 TCGA-WB-A80M-01A-11D-A35H-01 TCGA-WB-A80N-01A-11D-A35H-01 TCGA-WB-A80O-01A-11D-A35H-01 TCGA-WB-A80P-01A-11D-A35H-01 TCGA-WB-A80Q-01A-11D-A35H-01 TCGA-WB-A80V-01A-12D-A35H-01 TCGA-WB-A80Y-01A-11D-A35H-01 TCGA-WB-A814-01A-11D-A35H-01 TCGA-WB-A815-01A-11D-A35H-01 TCGA-WB-A816-01A-11D-A35H-01 TCGA-WB-A817-01A-11D-A35H-01 TCGA-WB-A818-01A-11D-A35H-01 TCGA-WB-A819-01A-11D-A35H-01 TCGA-WB-A81A-01A-11D-A35H-01 TCGA-WB-A81D-01A-11D-A35H-01 TCGA-WB-A81E-01A-11D-A35H-01 TCGA-WB-A81F-01A-11D-A35H-01 TCGA-WB-A81G-01A-11D-A35H-01 TCGA-WB-A81H-01A-11D-A35H-01 TCGA-WB-A81I-01A-11D-A35H-01 TCGA-WB-A81J-01A-11D-A35H-01 TCGA-WB-A81K-01A-11D-A35H-01 TCGA-WB-A81M-01A-11D-A35H-01 TCGA-WB-A81N-01A-11D-A35H-01 TCGA-WB-A81P-01A-11D-A35H-01 TCGA-WB-A81Q-01A-11D-A35H-01 TCGA-WB-A81R-01A-11D-A35H-01 TCGA-WB-A81S-01A-11D-A35H-01 TCGA-WB-A81T-01A-11D-A35H-01 TCGA-WB-A81V-01A-11D-A35H-01 TCGA-WB-A81W-01A-11D-A35H-01 TCGA-WB-A820-01A-11D-A35H-01 TCGA-WB-A821-01A-11D-A35H-01 TCGA-WB-A822-01A-11D-A35H-01 TCGA-XG-A823-01A-11D-A35H-01 Amplification Peak 1 1q21.3 chr1:120523956-154950221(probes 67531:69931) chr1:153493801-153620085(probes 69258:69299) chr1:120522602-155356633(probes 67529:70101) 0.00029562 0.00029562 0: t<0.1; 1: 0.10.9 1 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 1 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 0 Amplification Peak 2 4q31.1 chr4:140849687-140938418(probes 441942:442002) chr4:140896554-140902052(probes 441977:441977) chr4:140775352-141036733(probes 441860:442054) 0.00053852 0.00053852 0: t<0.1; 1: 0.10.9 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 3 11p15.2 chr11:1-25296454(probes 973836:989659) chr11:13164391-13348673(probes 981512:981684) chr11:13164391-13352404(probes 981512:981687) 0.23196 0.23196 0: t<0.1; 1: 0.10.9 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 4 12q13.3 chr12:55017371-58374945(probes 1078504:1080208) chr12:56781426-56791229(probes 1079478:1079478) chr12:56736878-57176174(probes 1079466:1079652) 0.028953 0.028953 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 Amplification Peak 5 14q24.3 chr14:77411889-77529068(probes 1212110:1212173) chr14:77423292-77518713(probes 1212115:1212166) chr14:77413245-77532342(probes 1212111:1212175) 0.055621 0.055621 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 Amplification Peak 6 17q21.31 chr17:42282074-42389627(probes 1331500:1331537) chr17:42287520-42388907(probes 1331502:1331536) chr17:42286038-42424054(probes 1331501:1331549) 0.0010279 0.0010279 0: t<0.1; 1: 0.10.9 0 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 0 0 Deletion Peak 1 1p12 chr1:117751737-118152240(probes 65925:66135) chr1:117906699-118076538(probes 66019:66094) chr1:1-149884926(probes 1:67534) 1.6022e-21 1.6022e-21 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 0 1 1 0 1 1 1 1 0 1 0 0 0 1 1 1 0 1 1 1 0 0 1 1 0 1 0 1 1 0 1 1 1 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 0 1 0 1 1 0 1 1 1 1 0 1 0 0 0 1 0 1 1 0 1 1 1 1 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 1 0 Deletion Peak 2 1q44 chr1:215791352-249250621(probes 108330:128607) chr1:243505842-245110572(probes 126525:127445) chr1:242717169-245186733(probes 126213:127489) 0.12617 0.12617 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 Deletion Peak 3 3p24.1 chr3:27762089-28619698(probes 274224:274771) chr3:28351781-28393386(probes 274658:274671) chr3:28358261-28398245(probes 274661:274673) 1.3622e-06 1.3622e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 1 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 1 1 1 0 1 1 1 1 1 1 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 1 1 0 0 1 0 0 0 1 1 0 0 1 1 1 1 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 1 1 0 0 1 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 Deletion Peak 4 3q26.1 chr3:162886928-163894013(probes 347964:348435) chr3:162843514-163081282(probes 347932:348027) chr3:156232193-198022430(probes 344523:365373) 1.1781e-06 1.1781e-06 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 0 0 0 0 1 0 0 1 1 0 0 1 1 1 0 0 1 1 1 1 0 0 1 0 0 0 0 1 0 1 0 1 1 0 1 1 1 1 0 1 1 1 1 0 0 0 0 1 1 0 0 1 1 1 1 0 0 1 0 1 1 1 1 1 0 0 0 1 1 0 0 1 0 0 0 1 1 1 0 0 0 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 1 0 1 0 0 1 1 0 1 0 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 1 0 1 1 1 1 1 Deletion Peak 5 4q22.1 chr4:90756551-91050179(probes 414934:415039) chr4:90795282-90958045(probes 414959:414992) chr4:90821337-90825534(probes 414976:414977) 0.0040046 0.0079735 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 Deletion Peak 6 4q34.2 chr4:151183855-191154276(probes 447639:467517) chr4:166793202-187216387(probes 456336:466646) chr4:166905026-166944580(probes 456392:456411) 0.003794 0.0037239 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 Deletion Peak 7 5q15 chr5:93948531-94087183(probes 517273:517338) chr5:93948876-94087183(probes 517274:517338) chr5:94016744-94030866(probes 517307:517308) 0.0026232 0.0026232 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 Deletion Peak 8 6p12.3 chr6:49915604-49978544(probes 596781:596814) chr6:49934736-49938340(probes 596792:596793) chr6:49924408-49949110(probes 596786:596797) 0.00096093 0.0010319 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 Deletion Peak 9 6q16.1 chr6:93500378-95273663(probes 618721:619409) chr6:93944741-94130625(probes 619067:619191) chr6:94029783-94043047(probes 619120:619133) 0.0069027 0.006755 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 Deletion Peak 10 8p22 chr8:13371955-17157258(probes 750211:752788) chr8:15273726-15624424(probes 751638:751860) chr8:15493260-15505834(probes 751750:751751) 0.060872 0.06115 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 1 0 0 0 Deletion Peak 11 8q23.3 chr8:114448182-116964867(probes 806535:807812) chr8:116420328-116822628(probes 807494:807732) chr8:116622560-116625429(probes 807614:807615) 0.064987 0.065513 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 12 9p24.2 chr9:3050941-3826080(probes 827282:827655) chr9:3216079-3530634(probes 827364:827520) chr9:3323517-3329506(probes 827443:827444) 0.0010319 0.0010319 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 Deletion Peak 13 9q21.12 chr9:38614979-101475404(probes 848699:869195) chr9:73149103-74067580(probes 850428:851121) chr9:73594265-73595546(probes 850775:850776) 0.13351 0.13068 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 Deletion Peak 14 11p15.4 chr11:1-10330781(probes 973836:979083) chr11:7038591-7096811(probes 977012:977050) chr11:1-12149530(probes 973836:980622) 0.00064285 0.00064285 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 1 0 1 1 0 0 0 0 0 0 1 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 0 1 1 1 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 1 1 0 1 1 1 Deletion Peak 15 11q22.1 chr11:98990382-100513772(probes 1027360:1028426) chr11:98886288-100231244(probes 1027275:1028241) chr11:99514443-99594161(probes 1027753:1027772) 8.5226e-05 8.6804e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 1 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 1 Deletion Peak 16 12q21.33 chr12:91383361-91498710(probes 1100021:1100077) chr12:91442316-91452893(probes 1100042:1100052) chr12:91443310-91458427(probes 1100043:1100059) 0.027945 0.029232 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 Deletion Peak 17 13q22.3 chr13:78338017-78522426(probes 1157773:1157881) chr13:78468161-78504854(probes 1157853:1157874) chr13:78470351-78489560(probes 1157856:1157869) 0.19809 0.18942 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 18 16q21 chr16:61773081-62438663(probes 1297399:1297833) chr16:61652150-62071522(probes 1297340:1297594) chr16:61875408-61883530(probes 1297468:1297469) 0.003375 0.0032797 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 Deletion Peak 19 17p13.2 chr17:6344536-6547775(probes 1316825:1316963) chr17:6351225-6461687(probes 1316826:1316907) chr17:6394498-6510373(probes 1316851:1316932) 0.038126 0.038126 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 1 1 0 0 0 1 1 1 0 0 1 1 0 1 1 0 0 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 1 1 0 1 0 0 1 0 Deletion Peak 20 17q11.2 chr17:29326736-29601307(probes 1325521:1325635) chr17:29419706-29428216(probes 1325561:1325562) chr17:25271295-43492974(probes 1323826:1332008) 1.9299e-12 1.9046e-12 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 1 1 1 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 1 0 1 0 1 0 0 1 1 1 0 1 0 0 0 1 0 0 0 Deletion Peak 21 22q13.31 chr22:33448268-51304566(probes 1481357:1491265) chr22:44391687-44568077(probes 1487749:1487893) chr22:40851807-51304566(probes 1485767:1491265) 0.044123 0.044123 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 1 1 0 1 1 1 0 0 0 0 1 1 1 0 0 1 0 0 0 1 0 1 1 1 1 1 1 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 1 1 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 1 1 0 0 1 Deletion Peak 22 Xp21.1 chrX:30870233-34644819(probes 1503591:1504815) chrX:30870233-34033668(probes 1503591:1504813) chrX:32057877-32062998(probes 1504203:1504204) 0.21423 0.21423 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 1 1 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 0 1 1 1 1 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 Amplification Peak 1 - CN values 1q21.3 chr1:120523956-154950221(probes 67531:69931) chr1:153493801-153620085(probes 69258:69299) chr1:120522602-155356633(probes 67529:70101) 0.00029562 0.00029562 Actual Copy Change Given 0.65719 -0.037218 0.022725 0.013911 0.010146 0.055658 0.025812 0.022444 0.058081 0.013911 -0.0095426 0.5665 0.0037465 0.98452 0.0020805 0 -0.0084385 0.019503 0 -0.49637 -0.0070576 0.013772 -0.47659 0.9019 -0.013402 -0.020138 0.71641 -0.79908 -0.0008316 0.037217 0.0033299 0.01447 0.8862 -0.032477 0.79007 0.42016 0.014749 1.7033 -0.35613 0.013385 -0.024651 0.049114 0.010564 0.080168 0.021463 0.018243 0.027612 -0.47818 -0.0022168 -0.59419 -0.017941 0.0087528 0.079735 0.012237 0.013772 0.010424 0.0041632 0.072971 0.69372 0.59206 0.079447 0.013492 0.95919 0.013911 0.015587 -0.15195 0.016006 -0.066252 0.023286 0.0015255 -0.018902 -0.0055375 0.018321 0.8485 0.53854 0.77214 0.10979 0.031155 -0.016841 -0.0056757 -0.33814 0.03031 0.006109 0.00041593 -0.005261 0.0016642 0.041458 0.024829 -0.1616 0.070243 -0.049289 0.68217 0.72363 0.037526 0.040326 0.0086135 0.019503 0.012934 0.0077783 0.025952 -0.019177 0.081755 0.88005 -0.11141 0.024268 0.38138 0.032986 0.022865 0.54013 0.0023581 0.030873 -0.035312 0.032986 -0.0056933 -0.0018014 0.0122 -0.10236 0.015308 0.022164 0.020203 0.014285 0.040609 0.01433 -0.0066432 0.021744 0.00083195 1.3596 0.025531 0.053664 -0.00041585 0.10979 0.00055459 0.032986 0.0094491 -0.033814 0.81806 0.0048579 0.0037465 0.033831 0.11303 -0.02978 0.0068044 -0.75235 0.015866 0.65835 0.02511 -0.0031859 0.065656 0.024689 0.010564 0.018103 0.087548 1.1003 0.013492 0.049398 0.023005 0.94048 0.16217 0.72207 -0.32635 0.0055529 0 Amplification Peak 2 - CN values 4q31.1 chr4:140849687-140938418(probes 441942:442002) chr4:140896554-140902052(probes 441977:441977) chr4:140775352-141036733(probes 441860:442054) 0.00053852 0.00053852 Actual Copy Change Given -0.0048461 0.43513 0.030873 0.015866 -0.015741 0.85898 -0.0012473 0.72489 0.00013863 -0.017803 -0.0099565 0.016286 -0.0073339 0 -0.0059522 -0.03095 0.0022193 0.00458 0.0015255 -0.00097017 -0.00055444 0.004719 -0.45586 0.0052749 0.026092 0.73189 0.012097 -0.022606 -0.0040162 0.85482 -0.007472 -0.050641 -0.0062782 -0.38392 -0.010784 -0.023429 0.011539 -0.015054 0.0077783 0 0.066005 0.0073609 -0.016292 0.011261 0.017544 -0.29508 -0.021124 -0.4805 -0.0094046 -0.01354 -0.03817 0.022865 -0.3856 0.0054139 -0.0095426 0.0041632 -0.22724 0.0037465 0.006109 -0.0059522 0.028763 -0.007472 0.81884 0.88146 0 0.027919 0.006109 -0.23153 -0.0123 -0.020549 0.16325 0.0022193 -0.011198 -0.010232 -0.024661 -0.0034627 0.0090312 0.012934 0.0034687 0.019643 0 0.035806 -0.0059522 -0.00055444 -0.0030475 -0.0091286 -0.010508 -0.012989 0 -0.01106 0.0041632 0.011261 -0.0068745 0.030451 0.022156 0.11521 -0.019863 0.00013863 0.003191 -0.0096806 -0.016429 -0.00069303 -0.012024 -0.038562 -0.010309 -0.0069195 0.024127 0.034254 -0.0034627 -0.026988 0.052678 0 0.94384 -0.00069303 -0.3011 0.11369 0.037935 -0.0044312 0.013213 0.68943 0.0014805 0.049114 0.023145 0.00041593 0.01433 0.56614 0 0.010006 0 0.0049969 -0.011473 0.81103 0.043723 0.88606 0.00083195 -0.017391 0.0058309 0.0038854 -0.048072 0.02695 0.030169 -0.0037395 0.0040986 -0.0008316 0.0062481 -0.0060904 -0.0071402 -0.89733 0.021183 -0.014228 -0.018765 0 -0.029175 0.016845 0.041741 0.0029434 -0.017403 -0.0032948 -0.011749 -0.32809 0 0.015937 Amplification Peak 3 - CN values 11p15.2 chr11:1-25296454(probes 973836:989659) chr11:13164391-13348673(probes 981512:981684) chr11:13164391-13352404(probes 981512:981687) 0.23196 0.23196 Actual Copy Change Given 0 -0.010646 0.64451 -0.65696 -0.95818 0.16995 0.80928 0.015866 -0.038714 0.013772 0.011261 -0.019314 -0.75115 -0.0015243 0.0016642 -0.34561 -0.0015243 0.0032614 -0.30686 0.0054139 -0.51517 -0.71595 0.0026357 -0.8902 -0.51352 0.017824 -0.0094046 -0.0063668 0.024268 0.017544 0.004719 -0.41212 -0.92047 -0.41317 0.0075391 -0.40782 0 0.023987 -0.76723 -0.78089 0.0043629 -0.0019399 -0.54633 0.0038854 -0.013815 -0.068649 0.0028874 0.034677 -0.69794 -0.60799 -0.00069303 -0.026778 -0.38906 -0.0012473 0 -0.0023553 -0.47564 0.0011093 -0.0022168 -0.72479 -0.77484 -0.0020784 0.017264 -0.0067813 0.18904 -0.7476 -0.0022168 -0.53093 2.3094 -0.8401 0.0058309 -0.26961 -0.0033243 0.016146 -0.0048461 -0.018353 0.0020805 0.014888 -0.0012473 -0.60119 -0.70145 0.0012481 -0.0016629 -0.78933 -0.013402 -0.67548 0.00027728 -0.50846 -0.57918 0.012516 -0.0059522 0 -0.82307 0.7283 -0.005252 -0.021647 0.0077052 0 0.0093098 0.0114 -0.04577 -0.042381 -0.0038779 -0.12562 -0.82148 -0.74551 -0.0080244 -0.0023553 -0.0072948 -0.52563 0.011121 -0.71586 0.62934 -0.010232 -0.57328 -0.16564 -0.70342 0.00037196 -0.011335 0.028763 -0.00087652 0.0087528 0 -0.00067954 -0.85496 0.0034687 -0.028081 -0.86524 0.00458 0.59566 -0.0098185 0.015447 0.0043021 -0.0056757 -0.59136 0.010703 -0.57842 -0.0026322 -0.036946 -0.0075955 -0.042772 0 -0.0032503 -0.0019787 -0.014641 0.0020805 -0.94597 -0.0059522 -0.74933 -0.91545 0.00458 0.044857 0.033831 -0.0048461 -0.39642 -0.01354 -0.6992 -0.12358 0 -0.39526 -0.56139 -0.58093 Amplification Peak 4 - CN values 12q13.3 chr12:55017371-58374945(probes 1078504:1080208) chr12:56781426-56791229(probes 1079478:1079478) chr12:56736878-57176174(probes 1079466:1079652) 0.028953 0.028953 Actual Copy Change Given 0.010006 -0.0023553 -0.0016629 0.0026357 0.0069435 0.088113 0.012934 0.004719 0.0083351 0.0055529 0 0 0 0.48561 0.017824 0.30138 -0.0026322 0.0041632 0.0088842 0.0029133 0.010285 0.00027728 0.47547 -0.0019399 -0.0091286 -0.0011087 -0.00055444 0.0030522 -0.0040162 0.0038854 0.0015255 0.0033299 -0.0070576 0.34171 0.0062481 0.012237 0.0058309 0.0063871 -0.0020784 0.0068368 0.78262 0.011243 0.015727 -0.066118 0.01881 0.0026357 -0.01205 0.024763 -0.00013862 -0.0081471 0.0027745 -0.015466 0.084065 0.70945 -0.0019587 -0.007472 0.013213 0.0114 0.0038854 0.60919 0.0065262 0.0070826 0.0052749 0.034536 0.0039445 0.010703 0.0041632 0.05025 2.2794 0.0033946 -0.0055375 0.0013868 0.012237 -0.0014793 0.013911 0.0069435 0.0087528 -0.006505 0.0034687 0 0.012097 0.0054139 0.0048579 0 0.033721 0.0049969 0.011121 0.02511 0.13628 0.017404 0.00027728 0.019503 0.03633 0.013074 0.0084743 0.010703 0.083631 0.0036076 0.00097064 0.024127 0.21653 0.018383 0.00069327 0.87072 0.020203 0.026373 0.018651 0.0098669 0.3743 -0.0085859 0.015727 0.016425 0.039478 -0.0042929 0.0098669 0.42011 0.0045914 0.0036076 0.9596 0.010842 0.93014 0.010842 0.00597 -0.00013862 0.0024969 0.026529 -0.02076 0.018663 0.026151 0 0.089851 0.0011093 0.018523 0.0070826 0.029606 0.003191 0.0041632 0.0043021 0.090285 0.009603 0.0011093 0.0052316 0.019437 0.011818 0.0076392 0.004719 0.092025 -0.0088526 0.012305 0.008892 0.038065 0.0072217 0.013632 0.0066653 -0.036401 0.019083 0.0024969 0.012074 0.02525 0.40844 -0.0013858 0.019714 Amplification Peak 5 - CN values 14q24.3 chr14:77411889-77529068(probes 1212110:1212173) chr14:77423292-77518713(probes 1212115:1212166) chr14:77413245-77532342(probes 1212111:1212175) 0.055621 0.055621 Actual Copy Change Given -0.022195 0.0068044 0.0036076 -0.092213 0.0066653 0.057226 0.00069327 -0.69839 -0.31797 0.0114 -0.087447 0.0022193 -0.0094046 -0.01849 0.00083195 -0.35852 0 0.0083351 0.0075 0.0094491 0.0070826 0.0027745 0.93936 0.0052749 -0.0027707 0.010982 0.00597 0.018523 0 -0.82578 0.0053128 0.0019418 0.0049969 0.33755 0.021603 -0.44878 0.0056919 0.011818 -0.0048461 -0.36881 0.86859 0.0090312 0.58722 0.00013863 0.9596 0.66882 -0.61664 -0.47226 -0.0018014 0.0051056 -0.0026322 0.018943 -0.27571 0.0098669 -0.0078863 0.00458 -0.11047 0.011818 0.00458 0.59926 0.018243 0.0067009 0.012985 -0.0072419 -0.14026 0.023566 -0.00065738 -0.23704 0.010146 0.0086135 -0.0070576 0.0033299 0.022024 0.019503 0.011261 0.0036076 0 0 0.003191 0.00067258 -0.0083005 -0.88395 1.4433 0.00032243 -0.12056 0.0054139 0.021603 0 -0.037898 0.020483 -0.024894 -0.030404 -0.0084844 0.0020805 0.016985 -0.0019399 0.0075 0.018663 0.0013868 0.011737 0.035694 0.021183 -0.80779 0.78738 0.014749 -0.3511 0 0.0056919 0.0063871 0.0027745 0.0091705 0.040326 0.00597 0.00027728 0 -0.49749 0.0073722 0.014749 -0.03054 0.013772 0.0050908 0.0051359 -0.84723 0.0027745 0.010146 0.00013863 -0.038306 0.0062481 0.0094491 0.0013868 0.0065262 0.0023146 0.0027745 0.0091705 0.015308 -0.77082 0.0063871 -0.0054691 0.0063231 0.0037611 -0.035721 0.013632 0.008688 0.0044411 -0.00041585 0.014749 0.0034687 0.0065262 -0.74455 0.0073609 0.014609 0.0068044 0.041883 0.0012696 -0.3356 0.018523 0.0037465 0.0078939 0.69241 -0.35293 0.0016642 0.018696 Amplification Peak 6 - CN values 17q21.31 chr17:42282074-42389627(probes 1331500:1331537) chr17:42287520-42388907(probes 1331502:1331536) chr17:42286038-42424054(probes 1331501:1331549) 0.0010279 0.0010279 Actual Copy Change Given 0.034395 0.38833 0.0098669 -0.019452 0.040468 0.96103 0.056513 1.0319 0.015028 -0.68815 -0.75333 -0.020549 0.026935 -0.027124 0.0015255 -0.014778 -0.0051227 0.030591 0.0075 0.019223 -0.022195 -0.056981 -0.51527 0.0090312 -0.02603 0.77676 -0.099356 0.069669 0.010424 0.85264 0.010915 -0.39864 0.88386 -0.052126 0.074984 0.028903 0.040609 0.038489 0.00083195 0.018416 -0.046794 0.029643 -0.0091286 -0.013953 -0.86279 -0.047936 -0.5981 -0.4549 0.0076392 0.02539 -0.0099565 -0.037218 -0.8793 0.055515 0.033267 -0.6783 -0.24277 -0.92144 -0.0091286 0.53134 0.022164 -0.59838 0.78119 0.1382 0.030732 -0.016017 0.0054139 -0.4197 0.018243 0.041971 0.020763 -0.0094046 0.026233 0.71603 0.048688 -0.81491 -0.79803 -0.025072 -0.028355 -0.03681 -0.3463 -0.10631 0.011121 -0.0091286 0.039902 -0.0013858 0.074121 0.011818 -0.56067 -0.00013862 0.0036076 0.0084743 0.030637 -0.082535 0.0072217 0.0094491 0.067805 0.038771 0.00097064 -0.83057 -0.65295 0.06494 0.040185 -0.16063 0.029747 0.043299 -0.0091286 -0.0083005 0.033549 0.017124 -0.86066 0.035059 0.032422 0.0052749 -0.046041 -0.028664 -0.021498 0.035947 0.02511 0.037782 0.01024 0.029184 0.05523 0.0019418 -0.84515 1.345 -0.078544 -0.010646 -0.57851 0.024408 0.1241 0.69148 0.00083195 0.031756 -0.036129 0.042874 0.0062481 -0.0029091 -0.78555 -0.026419 -0.083598 0.019083 0.0054882 0.0012481 0.0097276 0.034254 -0.0019399 1.5583 -0.014228 0.021323 0.085076 0.023005 0.36051 -0.00055444 -0.80194 0.051245 0.013632 0.82957 -0.66966 0.080745 0.0081959 -0.030471 Deletion Peak 1 - CN values 1p12 chr1:117751737-118152240(probes 65925:66135) chr1:117906699-118076538(probes 66019:66094) chr1:1-149884926(probes 1:67534) 1.6022e-21 1.6022e-21 Actual Copy Change Given -0.71497 -0.037218 -0.79802 -0.65295 0.010146 -0.77246 -0.81289 0.022444 -0.67811 -0.72579 -0.77998 -0.5794 0.0037465 -0.51618 0.0020805 0 -0.0084385 -0.77116 -0.77795 -0.49637 -0.0070576 -0.71506 -0.48858 -0.88302 -0.0040162 -0.020138 -0.73923 -0.78572 -0.0008316 -0.81843 -0.0030475 -0.40293 -0.92309 -0.032477 -0.79311 -0.65678 -0.86247 1.7033 -0.35613 -0.76884 -0.89577 -0.70393 -0.55837 -0.60041 0.021463 -0.81671 -0.63289 -0.47818 -0.0022168 -0.59419 -0.017941 0.0087528 -0.40285 0.69727 -0.92383 -0.70702 0.0041632 -0.93828 -0.70863 -0.73055 -0.77107 -0.61699 -0.013677 -0.91715 -0.72932 -0.74508 -0.8235 -0.066252 -0.8244 0.0015255 -0.018902 -0.0055375 -0.61201 -0.84762 -0.70071 -0.84947 -0.80517 -0.68806 -0.016841 -0.0056757 -0.33814 -0.8814 -0.73749 0.00041593 -0.005261 0.0016642 -0.79235 -0.2508 -0.1616 -0.7763 -0.049289 -0.66716 -0.10939 -0.69233 -0.82479 -0.80202 -0.81946 -0.64424 -0.56604 0.025952 -0.73503 -0.74858 -0.80182 -0.11141 -0.79978 -0.35578 -0.8163 -0.73004 -0.56714 0.0023581 -0.87798 -0.36929 -0.87852 -0.0056933 -0.0018014 -0.50207 -0.73248 -0.7327 -0.82236 -0.66855 -0.92129 -0.010413 -0.84117 -0.0066432 -0.86612 -0.6434 -0.0081624 -0.85241 -0.76303 -0.65043 -0.79605 0.00055459 -0.8513 0.0094491 -0.033814 0.0023581 -0.57565 0.0037465 -0.78808 -0.65779 -0.02978 -0.75909 -0.75235 -0.80211 -0.64612 -0.46655 -0.0031859 -0.036252 -0.7456 -0.91123 0.018103 -0.7675 0.038771 -0.89181 -1.2929 -0.6591 -0.70792 -0.81352 -0.68915 -0.32635 -0.54673 0 Deletion Peak 2 - CN values 1q44 chr1:215791352-249250621(probes 108330:128607) chr1:243505842-245110572(probes 126525:127445) chr1:242717169-245186733(probes 126213:127489) 0.12617 0.12617 Actual Copy Change Given 0.65553 -0.037218 0.022725 0.0049969 0.0065262 -0.056712 0.028622 0.022444 0.058081 0.00069327 -0.0095426 0.5665 0.0037465 0.99198 0.0020805 0 -0.0084385 0.0029943 0 -0.50836 -0.0021562 0.013772 -0.47955 0.0043021 0.0068044 -0.020138 0.71587 -0.79908 -0.0008316 0.037217 -0.0053982 0.01447 0.88164 -0.042245 0.76701 0.37924 0.014749 -0.56037 -0.36646 0.013385 -0.006859 0.01447 0.016985 0.080168 0.021463 0.017124 0.027612 -0.4867 -0.0022168 -0.61951 -0.017941 0.0087528 0.079735 0.012237 0.010159 0.010424 0.0041632 0.0033299 0.69372 -0.73433 0.056085 0.013492 0.017684 0.013911 0.015587 -0.15195 0.016006 -0.077078 0.017404 0.0015255 -0.018902 0.0097276 0.018321 -0.85289 0.53491 0.7591 0.11682 0.031155 -0.024935 -0.0056757 -0.3405 0.021043 0.006109 0.00041593 -0.005261 -0.00031329 0.035242 0.024829 -0.1609 0.06494 -0.049289 0.67196 0.73954 0.029368 0.040326 -0.0018988 0.019503 0.012934 0.0077783 0.025952 -0.019177 0.024408 0.0091705 -0.11141 0.024268 0.37775 0.0051359 -0.71051 0.49137 -0.0055375 -0.8886 -0.035312 0.0083351 0.0051276 -0.0018014 0.0122 -0.16165 0.015308 0.022164 0.014051 0.014285 0.018243 0.01433 -0.0066432 0.021744 0.00027728 -0.022058 0.018243 0.016282 -0.00041585 0.10979 0.00029489 0.032986 0.0013029 -0.033814 0.77009 -0.0042929 0.0037465 0.013353 0.11303 -0.032944 0.0068044 -0.7772 -0.80774 0.6629 0.02511 0.0058309 0.081322 -0.76046 0.00055459 0.018103 0.13875 1.0723 0.013492 0.023987 0.01433 0.010424 0.13892 -0.68961 -0.32797 0.0029133 0.0079683 Deletion Peak 3 - CN values 3p24.1 chr3:27762089-28619698(probes 274224:274771) chr3:28351781-28393386(probes 274658:274671) chr3:28358261-28398245(probes 274661:274673) 1.3622e-06 1.3622e-06 Actual Copy Change Given -0.020001 -0.00041585 0.020063 -0.65817 -0.013953 -0.42045 -0.014228 0.0038854 0.014749 0.00055459 -0.0022168 -0.57101 -0.40207 -0.015063 -0.80815 -0.36011 0.0081683 0.019923 0.018103 -0.00027724 -0.50733 -0.0023553 -1.2182 0.014609 -1.2929 -0.0030475 -0.63576 0.0081959 -0.030267 -0.0060904 -0.005261 -0.39642 -0.087977 -0.40119 -0.81171 -0.78766 0.020763 -0.95811 -0.36193 -0.3887 -0.90195 -0.70516 -0.28358 0.0080567 -0.84171 0.015308 -0.011085 0 -0.012713 -0.010784 -0.056712 -0.81814 -0.29189 -0.016017 0.030169 0.012376 -0.46664 -0.93489 -0.69889 -0.037988 -0.0071958 0.611 -0.013677 0.88766 -0.58637 -0.73906 0.018803 -0.51751 -0.16576 -0.019452 -0.040073 -0.27512 0.63664 -0.046041 0 -0.84907 -0.24265 0.0040685 -0.060345 -0.59434 -0.70037 -0.87243 -0.72093 -0.0049844 0 -0.010508 0.013632 -0.2497 -0.5714 -0.056981 -0.0054515 -0.048072 -0.16073 0.017963 -0.84274 0.011818 0.071822 0.01433 0.0023581 -0.7553 0.0063871 -0.076012 0 -0.10682 -0.56206 -1.2367 0.027869 0.013492 0.0038854 -0.012576 -1.0722 -0.35533 0.0093098 0 -0.55477 -0.50862 -0.69748 -0.73082 0.025812 0.020343 0.0089861 -0.059 -0.84863 -0.0013858 -0.85821 -0.011551 -0.015879 0.038065 0.020483 -0.010094 -0.21954 -0.0084385 -0.85178 -0.85781 -0.58068 -0.78606 0 -0.0040239 0.022809 -0.51752 0.010006 -0.016429 -0.73033 0.016425 -0.018765 -0.010232 0 0.001803 -0.74473 -0.0040162 -0.015329 0 -0.086518 0.022444 0.023426 0.023987 -0.03681 -0.68035 0.13007 -0.34458 0.00597 -0.38632 Deletion Peak 4 - CN values 3q26.1 chr3:162886928-163894013(probes 347964:348435) chr3:162843514-163081282(probes 347932:348027) chr3:156232193-198022430(probes 344523:365373) 1.1781e-06 1.1781e-06 Actual Copy Change Given -0.038442 -0.00041585 -0.79553 -0.65127 -0.013953 -0.0085523 -0.014228 -0.0048461 -0.6783 -0.0077482 -0.0022168 -0.57101 -0.40207 -0.0051227 0.0114 -0.36011 -0.45276 -0.76919 0.018103 -0.00027724 -0.51074 -0.43427 -0.40285 -0.88889 0.0066653 -0.0047079 -0.63576 1.797e-05 -0.030267 -0.0060904 -0.005261 -0.40196 -0.051451 -0.39018 -0.013127 -0.18785 -0.86649 -0.035993 -0.36701 -0.3887 -0.88338 -0.70289 0.0070826 -0.6008 -0.86164 -0.81348 -0.32056 0 -0.012713 -0.016017 -0.052666 -0.81129 -0.29189 -0.015054 0.0030522 -0.72447 -0.46664 -0.93611 -0.69541 -0.028081 -0.020138 -0.63235 -0.013677 -0.91221 -0.58712 -0.74358 -0.82879 -0.51084 -0.061017 -0.019452 -0.026382 -0.27512 -0.62035 -0.012713 -0.007472 -0.85219 -0.079139 0.010424 -0.060345 -0.59097 -0.70028 -0.85432 0.0075 -0.0049844 0 -0.010508 -0.79135 -0.2497 -0.56992 -0.70917 -0.0010027 -0.040752 -0.16073 -0.69051 -0.82432 -0.82032 -0.8235 -0.65389 -0.57447 -0.88607 -0.7495 -0.75797 0 -0.10235 -0.59711 -0.36635 -0.81745 -0.72013 -0.57437 -0.022195 -0.85583 -0.36431 -0.86507 0 -0.55477 -0.4906 -0.69748 -0.73355 -0.83034 -0.68013 -0.9196 -0.091244 -0.84808 -0.0013858 -0.84747 -0.024935 -0.0077482 -0.86042 -0.76218 -0.023868 -0.22649 -0.0084385 -0.85178 -0.0021511 -0.57388 -0.010232 -0.5796 0.0062481 -0.81258 -0.51536 0.015168 -0.041702 0.0078527 -0.80144 -0.63547 -0.010232 0 0.001803 0.02806 -0.0040162 -0.015329 -0.0051227 -0.02562 -0.88743 -0.84891 -0.65351 -0.03681 -0.67243 -0.68933 -0.34458 -0.56634 -0.38632 Deletion Peak 5 - CN values 4q22.1 chr4:90756551-91050179(probes 414934:415039) chr4:90795282-90958045(probes 414959:414992) chr4:90821337-90825534(probes 414976:414977) 0.0040046 0.0079735 Actual Copy Change Given -0.0048461 0.0012481 0.01447 0.015866 -0.015741 -0.017941 -0.0012473 -0.0044312 0.00013863 -0.0020784 -0.0030475 0.016286 -0.0073339 0 -0.0059522 -0.03095 0.0022193 0.00458 0.0015255 -0.00097017 -0.00055444 0.004719 -0.44189 -0.0049844 0.05523 0.0019418 0.012097 -0.01354 -0.0040162 -0.0038779 -0.007472 -0.050641 -0.0062782 -0.38392 -0.010784 -0.58206 0.0072678 -0.0091286 0.0077783 0 0.04875 0.0073609 -0.016292 0.011261 0.017544 -0.28501 -0.015555 -0.4805 -0.0094046 -0.01354 -0.37392 0.015727 -0.3856 -0.0083005 -0.00055444 -0.7257 -0.22724 0.0027745 0.013074 -0.0059522 0.028763 -0.0022168 -0.011749 0.88146 0 0.027919 0.006109 -0.23153 -0.010784 -0.020549 0.008892 0.0022193 -0.0070576 -0.012162 -0.024661 -0.0034627 0.0052749 0.012934 0.0030522 0.011539 0 0.035806 0.0040243 -0.00055444 0.012237 -0.0091286 -0.010508 -0.012438 0.00027728 -0.00027724 0.0041632 0.011261 -0.0068745 0.030451 0.0036076 0.11521 -0.011473 0.00013863 0.003191 -0.0096806 -0.016429 0.00597 -0.012024 -0.038562 -0.010309 -0.0060904 0.024127 0.016705 -0.0024938 -0.026988 0.062794 0 -0.0031859 -0.0022776 -0.32182 0.069143 0.028915 -0.0044312 0.006109 -0.002199 0.0014805 0.049114 0.023145 0.00041593 0.0077783 0.56614 0 0.010006 -0.00068154 0.0049969 -0.011473 -0.0022168 0.043723 -0.0008316 0.00083195 -0.017391 0.0083351 0.0020805 -0.048072 0.02695 0.030169 0.0066653 0.0040986 -0.0008316 0.0062481 -0.0060904 -0.0071402 1.7133 0.020483 -0.0044312 -0.018765 -0.00079254 -0.013264 0.016845 0.027076 -0.68058 -0.0056757 0.0051123 -0.011749 -0.33387 0 0.015937 Deletion Peak 6 - CN values 4q34.2 chr4:151183855-191154276(probes 447639:467517) chr4:166793202-187216387(probes 456336:466646) chr4:166905026-166944580(probes 456392:456411) 0.003794 0.0037239 Actual Copy Change Given -0.0048461 -0.0016629 0.02109 0.015866 -0.015741 -0.0044312 -0.0012473 -0.0089906 0.00013863 -0.017803 -0.79995 0.016286 -0.0073339 0 -0.0059522 -0.036441 0.0022193 0.00458 0.0015255 -0.00097017 -0.00055444 0.004719 -0.43897 0.00083195 0.023987 -0.0030561 0.012097 -0.022606 -0.0040162 -0.010784 -0.007472 -0.050641 -0.0062782 -0.38392 -0.010784 0.021183 0.011539 -0.0098185 0.0077783 0 0.019004 0.0073609 -0.020961 0.011261 0.011121 -0.80931 -0.011361 -0.4805 -0.0094046 -0.01354 -0.043946 0.0072603 -0.3856 0.0036267 -0.0023553 0.0041632 -0.22724 0.0037465 0.006109 -0.014505 0.045991 -0.007472 -0.0089906 -0.92622 0 0.027919 0.006109 -0.23153 -0.0123 -0.020549 0.16325 0.00092254 -0.011198 -0.012713 -0.024661 -0.0034627 0.0066653 0.012934 0.0034687 0.013275 0 0.035806 -0.0059522 -0.00055444 -0.0030475 -0.0091286 -0.017116 -0.012989 0 -0.01106 0.0041632 0.011261 4.5127e-05 0.030732 0.022156 0.11301 -0.019863 0.00013863 0.003191 -0.0096806 -0.016429 -0.00069303 -0.012024 -0.038562 -0.010309 -0.0069195 0.024127 0.034254 -0.0034627 -0.026988 0.057511 0 -0.0034627 0.0049969 -0.3011 0.1181 0.037935 -0.0044312 0.0037465 0.0026357 0.0014805 0.049114 0.023145 0.00041593 0.010187 0.5713 0 0.010006 0 0.0049969 -0.011473 0.0038854 0.043723 -0.85623 0.0019418 -0.024661 0.0058309 0.0038854 -0.048072 0.02695 0.030169 -0.03095 0.0040986 -0.0008316 0.0062481 -0.0060904 -0.0034627 -0.9016 -0.0031859 -0.014228 -0.018765 -0.00069303 -0.030131 0.016845 0.024178 0.0029434 -0.017403 -0.007081 -0.011749 -0.32809 0 0.012579 Deletion Peak 7 - CN values 5q15 chr5:93948531-94087183(probes 517273:517338) chr5:93948876-94087183(probes 517274:517338) chr5:94016744-94030866(probes 517307:517308) 0.0026232 0.0026232 Actual Copy Change Given 0.0065262 0.0052749 0.0066653 -0.54138 -0.00013862 0.0098669 0 -0.005261 0.023145 -0.006505 0.0011093 0.015447 0.010285 0.51385 0 -0.016017 0.0023581 -0.0011087 -0.061958 0.0013868 0.015447 0.012655 0.094782 0.0033299 -0.0067813 0.0019418 0.0056919 0 -0.00097281 0.0030522 -0.0014047 -0.007472 0.0036076 -0.0049844 -0.012438 0.0024969 0.0066653 -0.043896 -0.3729 0.0076716 -0.89401 0.013353 -0.0023553 -0.0016629 0 -0.024661 -0.023371 -0.48096 -0.0038779 0 0.00097064 0.010006 0.099724 -0.0018014 0.014051 0.0013868 0.022725 -0.94063 0.0095883 -0.011887 0 0 0.015376 0 0.0075 0.030591 0.0013868 -0.11691 -0.019177 -0.0055375 0 0.0090312 -0.013264 -0.0033243 -0.015879 0.0034687 -0.0047079 0.015447 0.00097064 0.011539 0.011958 0.024127 0.0023581 0.0056919 -0.034904 -0.0019399 -0.0040162 -0.037898 0.010285 0.019783 0.020763 0.0062481 0.01717 0.012376 0.010842 0.0038854 0.0015255 -0.0020614 0.0013868 -0.00041585 -0.0040162 -0.76612 -0.0036011 0.90676 -0.01849 -0.094196 0.033272 -0.68472 0.4611 0.51594 0.0012481 -0.022744 0.0058309 -0.0029091 0.03031 0.50372 0.02456 0.0034687 0.016985 0.015866 0.0011388 -0.00027724 0.076854 -0.0043591 0.024408 0.57739 0.00069327 -0.86633 0.018243 0.00013863 0.0076392 -0.0015243 0.029466 -0.0056757 -0.029584 -0.0045695 0.0015255 -0.013127 0.00069327 0.01253 0.0063871 -0.00054771 0 0.010982 -0.00055444 0 0.0090312 0.0068044 -0.74603 0.00041593 -0.016289 0.0052749 0 0.0016642 -0.84331 0 0 -0.11126 0.019129 0.41195 0.00083195 0.023778 Deletion Peak 8 - CN values 6p12.3 chr6:49915604-49978544(probes 596781:596814) chr6:49934736-49938340(probes 596792:596793) chr6:49924408-49949110(probes 596786:596797) 0.00096093 0.0010319 Actual Copy Change Given 0.015168 0.00083195 0.81006 0.019503 -0.0037395 0.029747 0.80831 0.0014657 0.67048 -0.0034627 0.0037465 0.0080567 -0.0048461 0.49787 -0.0011087 0.30346 0.0020805 0.013772 0.0027738 0.0022193 0.0090312 0.0075 -1.0279 0.0068044 -1.0719 0.0027745 0.0114 0.00458 0 0.0023581 -0.0024938 0.011679 0.0038854 0.36863 -0.00055444 -0.72765 0.0056919 -1.1227 0.015168 0.0043345 0.0063089 0.0038854 0.010867 -0.032341 0.034113 0.018243 -0.0086024 0.042732 0 0.0078631 0.83176 0.015168 0.095798 0.013911 0.0081959 0.014888 0.014609 0.021183 0.0097276 -0.014228 0.44443 -0.007472 0 -0.00074011 -0.019726 0.019643 0.0094491 0.048262 -0.0022168 -0.0022168 0.014888 -0.0024938 0.0075 -0.00097017 -0.061689 0.0041632 0.014749 0.63518 -0.011887 0.010006 0.015168 0.027357 -0.0011087 0.00097064 0.024969 -0.005261 0.018103 0.023706 0.10789 -0.056173 0.0013868 -0.0016629 0.0057371 -0.05496 0.028763 0.0075759 0 0.0043021 0.0025303 0.022585 0.0012481 0.017264 0.00041593 0.0024811 -0.90927 -1.002 0.02511 0.018103 0 -0.013264 -1.0869 0.0062481 0.0044835 -0.84795 0.015587 0.48131 0.022316 0.0084743 -0.03245 0.036229 0.0063421 0.012097 0.0095883 0.0022193 0.030873 -0.017803 0.85462 0.023005 -0.041159 0.02525 0.0048579 -0.0012651 0.029325 0 0.032845 -0.0051227 0.0075 0.023005 -0.016429 0.11185 -0.0026322 0.031999 -0.022396 0.012097 0.012237 0 0.0038854 -0.00013862 0.012097 0.0027745 -0.03504 -0.016292 0.00097064 0.019643 -0.39686 0.0051359 -0.007472 0.012771 -0.017381 0.40398 0.0011093 -0.15777 Deletion Peak 9 - CN values 6q16.1 chr6:93500378-95273663(probes 618721:619409) chr6:93944741-94130625(probes 619067:619191) chr6:94029783-94043047(probes 619120:619133) 0.0069027 0.006755 Actual Copy Change Given 0.015168 0.00083195 -0.79302 0.019503 -0.0037395 0.0077783 0.027638 0.0014657 -0.32461 -0.0034627 0.0037465 0.0080567 -0.0048461 0.50663 -0.0011087 0.30346 0.0020805 0.012305 0.0027738 0.0022193 0.0090312 0.0075 -0.70854 0.0024969 -0.17752 0.0027745 0.0114 0.00458 0 0.0023581 -0.0024938 0.011679 -0.013732 0.36863 -0.00055444 -0.035993 -0.86712 -1.2117 0.013213 -0.0028013 0.047745 0.0038854 0.011958 -0.032341 -0.90221 0.018243 -0.074337 0.025531 -0.010232 0.0078631 0.00041593 0.015168 0.095798 -0.00097017 0.0081959 0.0080567 0.014609 0.021183 0.0097276 0.0033299 -0.0051227 -0.007472 0 -0.00074011 -0.019726 0.028481 0.0094491 0.048262 -0.0022168 -0.021109 0.014888 0.0055529 0.0075 -0.00097017 -0.061689 0.0041632 -0.81425 -0.68924 -0.011887 0.010006 0.015168 -0.8571 -0.0011087 0.00097064 0.0088056 -0.005261 0.00027728 0.023706 0.10789 -0.056173 0.0013868 -0.039529 0.0057371 -0.05496 0.028763 0.0075759 0 0.0043021 0.0025303 -0.016126 0.0012481 0.017264 0.00041593 0.020079 -0.89404 -1.0676 0.02511 -0.61489 0 -0.013264 -0.96222 0.0062481 0.0044835 -0.98301 0.041883 0.48131 0.022316 0.0084743 -0.03245 -0.68606 0.0063421 -0.0046964 0.0095883 0.0022193 -0.85821 -0.017803 0.85462 0.035665 -0.041159 -0.66346 0.0048579 0 -0.85647 0 0.032845 -0.0051227 0.0075 0.0051359 -0.016429 -0.66049 -0.0026322 0.031999 -0.022396 0.012097 0.012237 0 0.0038854 -0.0033243 0.012097 0.0027745 -0.03504 -0.016292 0.00097064 -0.88619 -0.39686 0.0051359 -0.007472 0.012771 -0.60051 0.40398 0.0011093 -0.15777 Deletion Peak 10 - CN values 8p22 chr8:13371955-17157258(probes 750211:752788) chr8:15273726-15624424(probes 751638:751860) chr8:15493260-15505834(probes 751750:751751) 0.060872 0.06115 Actual Copy Change Given -0.016429 -0.0023553 -0.049622 0.010146 0.0098669 -0.80567 -0.83648 -0.024736 0 0 -0.00097017 -0.59536 0.0030522 -0.5203 -0.0034627 0.29803 -0.0022168 -0.0042929 0.012516 0 -0.014892 0 -0.46908 -0.006505 0.045708 -0.028765 -0.018295 -0.0020784 0.0019632 0.0083351 -0.00027724 0.003191 -0.9283 0.35235 -0.0020784 0.11565 -0.0044312 -0.051451 0.0079175 -0.012544 -0.0090682 -0.0069195 -0.0059159 0.0065262 -0.3085 -0.0024938 -0.088797 0.030451 0.0034687 -0.0035741 0.45377 0.0056919 -0.91364 -0.013815 -0.0051227 0.0069435 -0.041237 -0.01409 -0.00055444 0.62879 -0.0011694 -0.0018014 0.0052749 0.011121 -0.0071958 -0.76052 -0.0067813 0.010148 -0.73915 0.00091188 -0.020549 -0.0011087 -0.013264 0.011958 -0.0085766 -0.88023 -0.016017 -0.0091286 -0.0011087 0.0054822 0.0072217 -0.87213 -0.68715 0.0066653 0.026514 0.65351 -0.0071958 0.013353 0.026795 -0.048883 0.001803 -0.0015243 0.021789 -0.0087146 -0.0066432 -0.12382 -0.018765 -0.043195 -0.0048461 -0.0066432 -0.77626 -0.0035615 0.61611 -0.10892 0.75746 0.0040243 -0.014503 0.0029133 0.0056919 0.52275 -0.019589 -0.0027707 -0.0042929 0.0051359 0.024689 -0.49374 0.013225 -0.013677 -0.0030475 -0.0060904 -0.014685 -0.51959 -0.019589 0.0022193 0.0065262 -0.039801 -0.03103 0.012237 -0.005814 -0.0022168 -0.0033243 -0.0056757 -0.87565 -0.014503 -0.0038779 -0.0069195 -0.0059522 0.0019418 -0.024899 0.0019564 -0.037177 -0.77863 -0.026641 -0.0022168 -0.0029091 -0.0049844 0.0066653 0 0.0027745 0.0033299 -0.0030475 -0.69188 -0.91271 -0.92252 -0.032587 -0.42538 0.0054139 -0.0015478 -0.63538 0.074408 -0.0034288 -0.013883 Deletion Peak 11 - CN values 8q23.3 chr8:114448182-116964867(probes 806535:807812) chr8:116420328-116822628(probes 807494:807732) chr8:116622560-116625429(probes 807614:807615) 0.064987 0.065513 Actual Copy Change Given -0.016429 -0.0023553 -0.015604 0.010146 0.0098669 -0.012024 0.0043823 0 0 0 0.0056919 0.0084743 0.0030522 -0.5203 -0.0034627 0.29803 -0.0022168 -0.0042929 0.012516 0 -0.0083005 0 -0.45501 0.010006 -0.054016 0.0012481 -0.010094 -0.0020784 0.0055529 0 -0.00027724 0.003191 -0.92301 0.36428 -0.0020784 0.1917 -0.0044312 -0.011766 0.021884 -0.012544 0.027418 -0.00013862 0.012655 0.0065262 0.61859 -0.05148 -0.088797 0.030451 0.0034687 0.0020044 0.45377 0.0056919 0.084354 -0.0078863 -0.0051227 -0.71033 0.0056919 0.0083351 -0.00055444 0.62879 -0.0011694 -0.0018014 -0.0062286 0.011121 -0.0071958 -0.7479 -0.0067813 0.026092 -0.0062286 0.00091188 -0.020549 -0.0011087 -0.013264 0.7467 -0.0085766 -0.0018014 -0.016017 -0.0091286 -0.0011087 0.0054822 0.0072217 -0.87213 0.00069327 0.0066653 0.026514 0.65351 -0.0071958 0.018103 0.026795 -0.048883 0.001803 -0.0015243 0.019128 0.46759 -0.0066432 -0.0023553 -0.018765 -0.043195 -0.00013862 -0.0066432 -0.017254 0.0060679 0.96946 -0.10892 0.78987 -0.0026322 -0.81647 0.0029133 0.52485 0.52275 -0.0096806 0.0073609 -0.0042929 0.0070826 0.024689 -0.49374 -0.70054 -0.013677 -0.0030475 -0.0060904 -0.90414 0.34892 -0.020549 0.0022193 0.0065262 -0.47807 -0.011749 0.030873 -0.005814 -0.0022168 0 -0.0056757 -0.86892 -0.005814 0.0037465 -0.0069195 -0.0059522 0.0019418 -0.0092666 0.0019564 0 0.0027745 -0.0024197 -0.0022168 -0.0029091 -0.0049844 0.0066653 0 0.0027745 0.0033299 -0.0030475 0.0075 0.0012481 0.0034687 -0.032587 -0.0084385 0.0054139 0.0076156 0.034113 0.074408 0.0026357 -0.0013155 Deletion Peak 12 - CN values 9p24.2 chr9:3050941-3826080(probes 827282:827655) chr9:3216079-3530634(probes 827364:827520) chr9:3323517-3329506(probes 827443:827444) 0.0010319 0.0010319 Actual Copy Change Given 0.008892 -0.0033243 0 0 -0.0033243 0.01433 0.0058309 0.0068044 -0.18898 0.012934 0.033972 -0.0023553 -0.0008316 -0.0070576 -0.013953 -0.016292 0.0044411 -0.010094 -0.069332 -0.056981 0.0079175 -0.0049844 0.021884 -0.00097017 0.0040839 0.001803 0.0027745 -0.0063668 -0.0022168 -0.83752 -0.0011087 0.013353 0.011121 0.35202 -0.0085766 -0.16485 0.0054139 0.0084743 0.006109 -0.75821 0.00061528 -0.018353 0.0090312 0 -0.0055375 0.0034756 -0.3097 0.037924 0.0012481 0.0098669 0 -0.026714 -0.34561 -0.027124 -0.0039203 -0.016567 -0.0050756 0 0 -0.044281 -0.0042929 -0.0010345 -0.10197 -0.011335 0.0034687 -0.013815 -0.0042929 0.033267 0.00013863 -0.0058695 0.0033299 -0.013127 0.0086135 -0.832 -0.0045695 0.0062481 -0.012438 -0.005814 0.0044411 0.0024969 0.015587 0.014749 0.0026357 -0.0024938 0.031999 -0.0042929 0 0.0098669 -0.0051227 0.00013863 -0.00055444 0.00055459 -0.010325 -0.074544 -0.0048461 -0.0036011 -0.14989 -0.033132 0 0.027357 -0.010922 0.016985 0.013492 0.82512 0.0011093 -0.34607 0.010564 0.00041593 -0.0073339 -0.012438 0.026373 -0.0042929 -0.0095426 0.0017833 0.017544 -0.50414 0.292 -0.0063668 0.0027745 -0.0059408 0.0049518 -0.048326 0.0013868 -0.0041546 -0.0024938 0 0.81415 0.0037465 -0.0024938 0.00041593 0.0037465 0.0023581 -0.005814 -0.0051595 0.00597 0.014051 -0.0051227 -0.00027724 0.0075 0 -0.031496 0.0024969 0.0096628 0.0040243 0.0040008 0.0091705 -0.0053992 -0.91409 0.014051 -0.023429 -0.0034627 -0.00027724 -0.11428 -0.89309 0.017174 -0.026577 0.00027728 -0.020436 -0.58569 0 0.00013863 -0.0224 Deletion Peak 13 - CN values 9q21.12 chr9:38614979-101475404(probes 848699:869195) chr9:73149103-74067580(probes 850428:851121) chr9:73594265-73595546(probes 850775:850776) 0.13351 0.13068 Actual Copy Change Given 0.008892 -0.0033243 0 0 -0.0033243 0.035407 0.0058309 0.0068044 -0.18898 0.012934 0.033972 -0.0023553 -0.0008316 -0.0070576 -0.79474 -0.016292 0.001013 -0.03817 -0.069332 -0.056981 0.0079175 -0.0049844 0.062365 -0.00097017 0.027497 0.00083195 0.0027745 0.019264 0.0012481 -0.054257 -0.0011087 0.013353 0.0048073 0.3633 0.023145 -0.19762 0.0054139 0.0033839 0.006109 -0.75821 -0.90567 -0.0044312 0.0091705 0 -0.011284 0.0034756 -0.29582 0.037924 0.0012481 0.0098669 0 -0.026714 -0.34561 0.006109 0.016705 -0.012713 -0.0050756 0 0 -0.057116 -0.0042929 -0.0010345 -0.010922 -0.011335 0.0034687 -0.034158 -0.0042929 0.033267 0.0073609 0.0051359 0.0033299 -0.013127 0.0086135 -0.0060904 -0.0045695 -0.82717 -0.012438 -0.005814 0.0044411 -0.014641 0.015587 0.014749 0.0019347 -0.0024938 0.031999 -0.0042929 0 0.0098669 -0.0051227 0.00013863 -0.00055444 0.00055459 -0.023795 -0.074544 -0.0020784 -0.0036011 -0.14989 -0.022001 0 0.027357 -0.72588 0.016985 0.013492 0.82512 0.0011093 -0.36215 0.0065262 0.00041593 -0.0073339 -0.012438 -0.015466 -0.0042929 -0.0095426 0.0012481 -0.0061294 -0.50414 -0.71401 0.011121 0.0027745 0.013492 0.0049518 -0.048326 0.0013868 -0.0041546 -0.0024938 0 0.77445 0.0037465 -0.0024938 0.00041593 0.010703 0.0023581 -0.005814 -0.0051595 0.00597 0.014051 -0.0051227 -0.00027724 0.0075 0 -0.031496 0.0024969 0.0096628 0.0040243 0.0022193 0.0091705 -0.0053992 0.016006 0 -0.03095 -0.0034627 -0.00027724 -0.11428 0.00934 0.042449 -0.026577 0.00027728 -0.020436 -0.0041546 0 0.00013863 -0.0224 Deletion Peak 14 - CN values 11p15.4 chr11:1-10330781(probes 973836:979083) chr11:7038591-7096811(probes 977012:977050) chr11:1-12149530(probes 973836:980622) 0.00064285 0.00064285 Actual Copy Change Given 0 -0.010646 0.64451 -0.65696 -0.95818 0.16995 0.80928 0.015866 -0.038714 0.013772 0.011261 -0.019314 -0.75115 -0.0015243 0.0016642 -0.34561 -0.0015243 0.0032614 -0.30686 0.0054139 -0.51517 -0.71595 -0.0008316 -0.8902 -0.53002 0.017824 -0.0094046 0.017264 0.014051 0.017544 0.004719 -0.41212 -0.92047 -0.41317 0.0075391 -0.40782 0 0.023987 -0.76723 -0.78089 -0.027355 -0.0019399 -0.54633 0.0038854 -0.92689 -0.068649 0.021157 0.034677 -0.69794 -0.60799 -0.60342 -0.026778 -0.38906 0.003191 -0.028765 -0.0023553 -0.47564 0.0011093 -0.0022168 -0.72479 -0.77484 -0.0020784 0.017264 -0.0067813 0.18904 -0.7476 -0.0022168 -0.53093 -0.83897 -0.8401 0.0058309 -0.27071 -0.0033243 0.016146 -0.0048461 -0.018353 0.0020805 0.00055459 -0.0012473 -0.60119 -0.70145 0.0012481 -0.73906 -0.78933 -0.013402 -0.67548 0.00027728 -0.50846 -0.57918 0.012516 -0.0059522 0 -0.82307 0.014888 -0.0038779 -0.021647 0.0077052 0 0.0093098 0.0114 -0.04577 -0.042381 -0.0038779 -0.12562 -0.82148 -0.74551 -0.0080244 -0.0023553 -0.0072948 -0.52563 0.0019418 -0.71586 0.62934 -0.010232 -0.57328 -0.16564 -0.70342 0.026795 -0.011335 0.028763 -0.00087652 0.0087528 0 -0.00067954 -0.85496 0.0034687 -0.028081 -0.85963 0.00458 0.59566 -0.0098185 0.015447 0.0043021 -0.0056757 -0.59136 0.030169 -0.57842 -0.0026322 -0.036946 -0.0075955 -0.042772 0 -0.0032503 -0.0019787 -0.014641 0.023005 -0.94597 -0.0059522 -0.74933 -0.91545 0.00458 0.044857 0.033831 -0.0048461 -0.39642 -0.01354 -0.6992 -0.12358 0 -0.39526 -0.56139 -0.58093 Deletion Peak 15 - CN values 11q22.1 chr11:98990382-100513772(probes 1027360:1028426) chr11:98886288-100231244(probes 1027275:1028241) chr11:99514443-99594161(probes 1027753:1027772) 8.5226e-05 8.6804e-05 Actual Copy Change Given 0 -0.010646 0.64451 -0.65696 -0.95818 -0.79069 -0.071071 0.0076392 -0.079476 -0.72632 -0.77107 -0.019314 -0.78446 -0.0015243 -0.0096806 -0.35769 -0.0015243 0.0032614 -0.31057 0.0054139 -0.51311 0.0062481 -0.75158 -0.88928 -1.2929 0.017824 -0.0094046 -0.0063668 0.0065262 0.017544 0.004719 0.015308 0.023706 -0.40517 0.015308 -0.77031 0 0.0075 -0.35829 0.010457 -0.0018793 0 -0.55377 0.0038854 -0.027124 -0.81444 0.001645 -0.47226 0.0084743 -0.60748 -0.60332 -0.026778 -0.38906 -0.0012473 0 -0.0023553 -0.47564 -0.0062286 -0.0022168 -0.72252 0.010842 0.00597 0.011261 -0.0018014 -0.47607 0.01419 -0.0029091 -0.52528 -0.0078863 -0.8401 0.0058309 -0.26961 -0.034086 -0.85773 -0.0048461 -0.86334 -0.0049844 -0.0091286 -0.0012473 -0.60119 -0.70483 0.0012481 -0.0016629 -0.78933 -0.013402 -0.67223 0.00027728 -0.50846 -0.57605 0.00597 -0.0059522 0 0.0036131 -0.045364 0.0044411 -0.0056757 0.0077052 0 -0.014853 0.0114 -0.04577 -0.042381 -0.012367 -0.12562 0.0033753 -0.035176 -0.0080244 -0.0023553 -0.0072948 -0.53032 -0.7508 0.009744 0.011818 -1.0941 -0.57239 0.30581 -0.0052497 0.00037196 -0.011335 0.028763 -0.00087652 0.00029344 -0.0036011 -0.00027724 -0.84795 0.0034687 -0.022332 0.0023581 -0.020412 -0.020138 -0.0098185 -0.0020784 0.0043021 -0.0081624 -0.57979 -0.76294 0 -0.0026322 -0.036946 -0.0075955 -0.010508 -0.76569 -0.0032503 0.0056919 -0.01106 0.0020805 0.0049969 -0.0059522 0.0012481 0.0020805 0.00458 -0.76415 0.010842 -0.0044312 -0.84475 -0.01354 -0.70325 -0.13641 0 -0.38044 0.0019418 -0.58093 Deletion Peak 16 - CN values 12q21.33 chr12:91383361-91498710(probes 1100021:1100077) chr12:91442316-91452893(probes 1100042:1100052) chr12:91443310-91458427(probes 1100043:1100059) 0.027945 0.029232 Actual Copy Change Given 0.010006 -0.0023553 -0.0016629 0.0026357 0.0069435 0.19254 0.012934 0.004719 0.0095883 0.0055529 0.0024969 0 0 0.49199 0.013074 0.30138 -0.0026322 0.0041632 0.0075811 0.0029133 0.010285 0.00027728 -0.65062 -0.0019399 -0.041974 -0.0011087 -0.00055444 0.0030522 0.0080567 0.0038854 0.0027745 0.011958 -0.0070576 0.34171 0.0062481 -0.85019 0.0058309 -0.58921 -0.0020784 0.0068368 0.016766 0.011243 0.015727 -0.066118 0.01881 0.0038854 -0.01205 0.024763 -0.00013862 0.0081959 0.0027745 -0.015466 0.084065 -0.67753 0.0052749 -0.007472 0.018383 0.0114 0.0038854 0.57358 0.0065262 0.0070826 0.0052749 0.0072217 0.0039445 0.010703 0.0041632 0.04741 -0.0099565 0.0033946 -0.0055375 0.0013868 0.012237 -0.0014793 0.013911 0.0069435 0.0087528 0.62752 0.0034687 0 0.012097 0.0054139 0.0048579 0 0.033721 0.0049969 0.011121 0.02511 0.13628 0.017404 0.00027728 0.019503 0.03633 0.00055459 0.0084743 0.0015255 -0.55737 0.0036076 0.00097064 0.024127 0.21653 0.028763 0.00069327 0.87072 0.015447 -0.63206 0.013074 0.0098669 0.3743 -0.0085859 -0.87111 0.016425 0.039478 -0.0047079 0.0098669 0.42011 0.002647 0.0036076 0.011539 0.010842 0.89848 0.010842 0.00597 -0.00013862 0.0024969 0.026529 -0.02076 0.010842 0.026151 0 0.089851 -0.0023553 0.018523 0.0070826 0.029606 0.003191 0.0041632 0.0022193 0.090285 0.009603 -0.027811 0.0052316 0.019437 0.0072217 0.0076392 0.004719 0.092025 -0.0088526 0.016146 -0.00024489 0.038065 0.0072217 -0.015466 0.0066653 -0.38471 0.019083 0.0024969 0.02144 0.011958 0.4031 -0.0013858 0.019714 Deletion Peak 17 - CN values 13q22.3 chr13:78338017-78522426(probes 1157773:1157881) chr13:78468161-78504854(probes 1157853:1157874) chr13:78470351-78489560(probes 1157856:1157869) 0.19809 0.18942 Actual Copy Change Given -0.0063668 0.00097064 -0.0024938 0.21085 -0.0077482 -0.28409 -0.00041585 -0.010094 -0.0044312 -0.0095426 -0.0030475 0.00597 0.0054139 -0.0016629 -0.011887 0.29867 -0.0089906 -0.007472 -0.00069303 -0.0027707 0.0087528 0.0036076 -1.1614 -0.0073339 -0.6096 -0.0018014 -0.0030475 -0.013127 -0.0023733 -0.0048461 -0.0023553 -0.0123 0 0.37463 -0.019726 -1.1785 -0.00013862 0.0056919 0.0091447 0.0015578 0.010764 -0.0076101 0.013492 0.00027728 -0.00097017 0.026654 0.56131 0.49718 0.078582 -0.012576 -0.0066432 -0.04428 0.091445 -0.01354 -0.0059522 0.018663 0.015727 -0.0091286 -0.0073339 -0.012607 -0.065045 -0.010508 -0.010646 0.095944 -0.0087146 -0.73143 -0.0022168 0.047694 -0.011611 0.75777 -0.011887 -0.00027724 -0.0012473 -0.015604 0.00041593 -0.0038779 -0.0041546 0.013074 0 0.017684 0.002671 0.0097276 -0.014366 -0.014503 -0.038578 -0.0016629 -0.13057 0.012655 0.11213 -0.005261 -0.00014071 -0.057385 0.019408 -0.48449 0.0033299 0.011261 -0.0049844 -0.013815 -0.0038779 -0.025483 -0.011749 0.0015255 -0.031226 0.90616 -0.025756 0 0.0079175 0.0075 -0.013677 0.49683 0.043015 0.0070826 -0.015958 -0.0024938 0.030873 -1.0106 0.010575 -0.017537 -0.0013858 -0.0018014 -0.010139 -0.019726 -0.0084385 0.0036076 0.0084743 -0.030595 0.00055459 0 -0.0053992 -0.022195 -0.0098185 -0.0045695 0.0044411 -0.0063688 0.027216 -0.032314 0.00097064 0 -0.015329 -0.090347 0.015168 -0.029175 -0.0075363 -0.001515 0.0041632 -0.0094046 0.0029133 0.0063871 0.0026528 -0.0086081 -0.0033243 -0.0098299 -0.0020784 0 0.015587 0.0012481 -0.018316 -0.0040396 0.0022193 0.4158 -0.0044312 0.01482 Deletion Peak 18 - CN values 16q21 chr16:61773081-62438663(probes 1297399:1297833) chr16:61652150-62071522(probes 1297340:1297594) chr16:61875408-61883530(probes 1297468:1297469) 0.003375 0.0032797 Actual Copy Change Given 0.026092 0.0011093 -0.010922 -0.016154 0.029044 0.099579 0.02525 0.0011093 0.0087528 0.023426 0.0083351 -0.018705 0.0016642 0.48871 0.0070826 -0.0049844 0.00041593 -0.0026322 0.0065262 0.019503 0 -0.017803 -0.18836 0 0.00458 -0.0030475 -0.0077482 0.01876 0.012237 0.071535 0.0040243 0.015727 0.0062481 -0.050506 0.0416 0.058937 -0.00097017 0.0095883 -0.0044312 0.022056 -0.91729 0.016705 -0.043155 -0.0051227 0.0094491 0.018103 0.020316 -0.46865 0.016006 0.017264 -0.0031859 -0.012024 0.094346 0.018103 0.025671 0.0043021 -0.0013858 -0.0051227 -0.0011087 0.55531 0.015628 0.011261 0.024548 -0.0020784 0.048972 -0.0034627 -0.01465 0.015118 0.019923 0.016984 0.013213 -0.0063668 0.0090312 0.03214 0.13583 0.012237 0.001803 -0.022606 -0.0038779 -0.017254 -0.055514 -0.0099565 0.0086676 -0.0034627 -0.034223 0 0.032563 0.00041593 0.092315 0.029325 -0.0029091 -0.0040162 0.02235 0 -0.021235 -0.0018014 -0.038715 0.0096779 -0.010508 0.054803 0.24373 0.027638 0.024829 -0.15884 0.0062481 0.030169 -0.029994 -0.024798 0.00027728 0.011818 -0.028355 -0.046718 0 -0.0095426 -0.030404 0.43711 -0.018754 -0.021098 0.0015255 0.043157 -0.0076549 0.031577 0.0282 0.0052749 0 0.023145 -0.06424 -0.017941 0.012862 0.004719 0.020343 0.0027745 -0.0099565 0.022164 -0.017666 0.025175 -0.0024938 -0.0011087 0.013213 0.035256 -0.066658 0.019083 0.0072961 -0.0036011 -0.0026322 0.023987 0.0084743 -0.0049844 -0.021921 0.013632 0.031014 0.015866 0.075991 -0.0088526 -0.4119 -0.013264 0.021323 0.029723 0.57952 0.0375 0.001803 -0.001454 Deletion Peak 19 - CN values 17p13.2 chr17:6344536-6547775(probes 1316825:1316963) chr17:6351225-6461687(probes 1316826:1316907) chr17:6394498-6510373(probes 1316851:1316932) 0.038126 0.038126 Actual Copy Change Given 0.034395 0.0012481 0.0098669 -0.019452 0.040468 0.07988 -0.79101 0.045566 0.0012985 -0.71149 -0.76775 -0.020549 -0.81597 -0.035069 -0.80913 -0.014778 -0.0051227 -0.76252 -0.78505 0.019223 -0.022195 -0.056981 -0.040209 -0.89756 -0.031086 0.00458 -0.099356 0.069669 0.018523 0.086657 -1.2446 -0.39864 -0.013127 -0.052126 0.074984 -0.65305 -0.86767 -0.36624 0.00083195 0.018416 -0.064902 0.029643 -0.0091286 -0.013953 -0.8838 -0.047936 -0.2786 -0.4549 0.0076392 0.02539 -0.0099565 -0.037218 0.086377 0.037287 0.033267 0.0080567 -0.24277 -0.95853 -0.0091286 -0.7709 0.022164 -0.59838 0.047978 -0.10644 -0.71604 -0.8041 0.0054139 -0.4197 0.018243 -0.83114 -0.70064 -0.0094046 -0.61249 0.019643 0.048688 -0.84251 -0.233 -0.025072 -0.028355 -0.03681 -0.3463 -0.10631 -0.33618 -0.0091286 0.039902 -0.68186 -0.78479 0.011818 -0.56067 -0.58088 0.0036076 0.0084743 -0.83669 -0.082535 0.0072217 0.0094491 -0.30567 0.038771 0.00097064 -0.84851 -0.70523 -0.37561 0.040185 -0.1889 0.029747 0.043299 -0.03395 -0.0083005 -0.073837 0.017124 -0.89158 -0.42276 -0.88766 0.0052749 -0.046041 -0.028664 -0.021498 -0.67738 -0.05336 -0.65845 0.013308 0.029184 0.041753 0.0019418 -0.84515 -0.0094046 -0.078544 -0.021135 -0.57851 -0.65361 -0.77981 -0.00041585 -0.87953 -0.81827 -0.036129 -0.75702 0.0075 -0.0029091 -0.80846 -0.026419 -0.083598 -0.0008316 0.0028487 -0.0022168 0.0097276 0.036512 -0.0019399 -0.88912 -0.014228 -0.91093 -0.70854 -0.70729 -0.82798 -0.00055444 -0.44771 -0.58618 0.013632 -0.69551 -0.017391 0.080745 -0.54926 -0.030471 Deletion Peak 20 - CN values 17q11.2 chr17:29326736-29601307(probes 1325521:1325635) chr17:29419706-29428216(probes 1325561:1325562) chr17:25271295-43492974(probes 1323826:1332008) 1.9299e-12 1.9046e-12 Actual Copy Change Given 0.034395 0.0012481 0.0098669 -0.019452 0.040468 0.07988 0.056513 0.045566 0.015028 -0.69441 -0.73117 -0.020549 0.026935 -0.035069 0.0015255 -0.014778 -0.0051227 0.030591 0.0075 0.019223 -0.022195 -0.056981 -0.51527 -0.84947 -0.02603 0.00458 -0.099356 0.069669 0.018523 -0.78361 0.010915 -0.39864 0.88386 -0.052126 0.074984 0.028903 0.040609 0.038489 0.00083195 0.018416 -0.064902 0.029643 -0.0091286 -0.013953 -0.83311 -0.047936 -0.89673 -0.4549 0.0076392 0.02539 -0.0099565 -0.037218 -0.8793 0.037287 0.033267 -0.66365 -0.24277 -0.92853 -0.0091286 0.53134 0.022164 -0.59838 0.047978 -0.88635 -0.71604 -0.016017 0.0054139 -0.4197 0.018243 0.041971 0.016077 -0.0094046 -0.61249 0.032704 0.048688 -0.81491 -0.79803 -0.025072 -0.028355 -0.03681 -0.3463 -0.10631 0.011121 -0.0091286 0.039902 -0.0053825 -0.73424 0.011818 -0.56067 -0.00013862 0.0036076 0.0084743 0.030637 -0.082535 0.0072217 0.0094491 0.067805 0.038771 0.00097064 -0.83155 -0.68296 0.06494 0.040185 -0.16063 0.029747 0.043299 -0.0091286 -0.0083005 0.033549 0.017124 -0.89158 0.035059 0.032422 0.0052749 -0.046041 -0.028664 -0.021498 0.035947 0.02511 0.037782 0.013308 0.029184 0.060079 0.0019418 -0.84515 -0.0094046 -0.078544 -0.021135 -0.57851 0.017587 0.1241 -0.00041585 0.00083195 -0.81827 -0.036129 0.042874 0.0075 -0.0029091 -0.78555 -0.026419 -0.083598 -0.74072 -0.50686 -0.79795 0.0097276 -0.43604 -0.0019399 -0.88912 -0.014228 0.021323 -0.70854 -0.70729 -1.2929 -0.00055444 -0.80269 0.051245 0.013632 -0.018926 -0.65826 0.080745 0.0081959 -0.030471 Deletion Peak 21 - CN values 22q13.31 chr22:33448268-51304566(probes 1481357:1491265) chr22:44391687-44568077(probes 1487749:1487893) chr22:40851807-51304566(probes 1485767:1491265) 0.044123 0.044123 Actual Copy Change Given 0.03637 -0.0024938 -0.82105 -0.020549 -0.94999 -0.73573 -0.042652 -0.46759 0.013353 -0.71479 0.0055529 -0.022469 0.018803 -0.027808 0.00083195 -0.026851 -0.016841 -0.023566 -0.024661 -0.056712 -0.0081624 -0.18131 0.26169 -0.90343 -0.053476 -0.1307 0.0072217 -0.77914 -0.4749 -0.80443 0.0016642 0.028903 -0.94137 0.26592 -0.77048 0.033267 -0.89465 -0.07881 0.00083195 0.027389 -0.079018 -0.70388 -0.30839 -0.007472 0.058509 -0.82244 -0.60101 -0.45447 -0.020138 -0.046718 -0.085457 -0.58823 0.095508 0.043582 0.04259 0.0091705 -0.0015243 -0.96229 -0.0029091 -0.12642 0.025671 0.035383 -0.75651 0.00013863 -0.0085766 -0.049289 -0.0044312 -0.049289 0.015447 0.04812 0.017824 -0.022195 -0.03054 0.042449 0.025952 -0.85218 -0.20573 -0.034359 -0.042652 -0.041295 -0.33549 -0.92473 -0.013953 -0.00055444 -0.030813 0.0030522 -0.78978 -0.056846 0.093766 -0.76954 0.00097064 -0.00041585 0.0022645 -0.15106 -0.62474 0.0091705 -0.62054 -0.62389 -0.0016629 -0.84907 -0.70621 -0.73722 0.04429 0.68293 0.023145 -0.010094 -0.88527 -0.78117 -0.19512 0.030732 -0.0088526 -0.11456 0.021043 -0.0067813 -0.062226 -0.53045 -0.076767 -0.701 -0.54583 -0.67251 -0.93838 -0.47923 -0.83607 -0.0024938 -0.84707 0.035947 -0.09855 -0.09578 -0.17487 -0.10589 -0.055499 0.004719 -0.86539 -0.83486 -0.067056 -0.7596 0.013074 -0.0073339 -0.8103 -0.29614 -0.14387 -0.76184 0.010917 -0.065045 -0.016841 -0.42134 0.00055459 -0.022195 -0.031905 0.028341 -0.71729 0.018383 -0.8154 -0.91875 -0.0033243 -0.604 0.032704 -0.68808 -0.70118 0.024009 -0.0033243 -0.1815 Deletion Peak 22 - CN values Xp21.1 chrX:30870233-34644819(probes 1503591:1504815) chrX:30870233-34033668(probes 1503591:1504813) chrX:32057877-32062998(probes 1504203:1504204) 0.21423 0.21423 Actual Copy Change Given -0.010646 -0.0027707 -0.071739 -0.097495 -0.076678 -0.082254 -0.062495 -0.064777 -0.10132 -0.056939 -0.07186 -0.10053 -0.084395 0.14191 -0.079343 0.069382 -0.038442 -0.04726 -0.099472 -0.046726 -0.067726 -0.12069 -0.045312 -0.13303 0.012097 0.10176 -0.066118 -0.078544 -0.0067813 -0.1351 0.00055459 -0.077345 -1.2929 0.056767 -0.054555 -0.10854 -0.13936 -0.087073 -0.12499 -0.16329 -0.27733 -0.17196 -0.05496 -0.05496 -0.16345 -0.12784 -0.054446 -0.19165 0.0069435 -0.096572 0.00069327 -0.081403 -0.12395 -0.015054 -0.083067 -0.093271 -0.090493 -0.2368 -0.069198 0.12005 -0.040345 -0.044009 -0.042517 -0.033814 -0.11208 -0.22429 -0.053611 -0.11352 0.02806 -0.015329 -0.036265 -0.031496 -0.048072 -0.072408 0.011121 -0.097363 -0.084926 -0.043059 -0.0044312 -0.090229 -0.15336 -0.26829 -0.085096 -0.0501 -0.00041585 0.064654 -0.087181 -0.066118 -0.072675 -0.087844 -0.0030475 -0.048478 -0.025301 -0.082535 -0.17094 -0.079742 -0.096968 -0.080807 -0.049559 -0.14247 -0.077212 -0.15195 -0.010232 0.31147 -0.068663 -0.088109 -0.2233 -0.12004 0.023706 0.074121 -0.15937 -0.078435 -0.10053 -0.00097017 -0.53794 -0.093438 -0.15936 -0.12826 -0.13716 -0.12644 -0.13398 -0.007472 -0.20685 0.0016642 -0.25261 0.037641 0.16145 -0.15315 -0.08094 -0.057789 -0.054825 0.0027745 -0.23423 -0.061958 -0.066252 -0.10092 -0.073343 -0.0012473 -0.099209 -0.10971 0.1158 -0.037788 -0.10545 -0.11548 -0.047395 -0.026441 -0.041974 -0.021913 -0.14412 -0.083731 -0.020001 -0.064911 -0.072675 -0.17891 0.017824 -0.097363 -0.08014 -0.11092 -0.080541 -0.040752 -0.071739 -0.068595