Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold TCGA-AF-2687-01A-02D-1732-01 TCGA-AF-2689-01A-01D-1549-01 TCGA-AF-2690-01A-02D-1732-01 TCGA-AF-2691-01A-01D-1549-01 TCGA-AF-2692-01A-01D-0819-01 TCGA-AF-2693-01A-02D-1732-01 TCGA-AF-3400-01A-01D-1549-01 TCGA-AF-3911-01A-01D-1732-01 TCGA-AF-3913-01A-02D-1428-01 TCGA-AF-4110-01A-02D-1732-01 TCGA-AF-5654-01A-01D-1656-01 TCGA-AF-6136-01A-11D-1825-01 TCGA-AF-6655-01A-11D-1825-01 TCGA-AF-6672-01A-11D-1825-01 TCGA-AF-A56K-01A-32D-A38W-01 TCGA-AF-A56L-01A-31D-A38W-01 TCGA-AF-A56N-01A-12D-A38W-01 TCGA-AG-3574-01A-01D-0819-01 TCGA-AG-3575-01A-01D-0819-01 TCGA-AG-3578-01A-01D-0819-01 TCGA-AG-3580-01A-01D-0819-01 TCGA-AG-3581-01A-01D-0819-01 TCGA-AG-3582-01A-01D-0819-01 TCGA-AG-3583-01A-01D-0819-01 TCGA-AG-3584-01A-01D-0819-01 TCGA-AG-3586-01A-02D-0819-01 TCGA-AG-3587-01A-01D-0819-01 TCGA-AG-3591-01A-01D-1732-01 TCGA-AG-3592-01A-02D-1732-01 TCGA-AG-3593-01A-01D-0819-01 TCGA-AG-3594-01A-02D-0819-01 TCGA-AG-3598-01A-01D-0824-01 TCGA-AG-3599-01A-02D-0824-01 TCGA-AG-3600-01A-01D-0824-01 TCGA-AG-3601-01A-01D-0824-01 TCGA-AG-3602-01A-02D-0824-01 TCGA-AG-3605-01A-01D-0824-01 TCGA-AG-3608-01A-01D-0824-01 TCGA-AG-3609-01A-02D-0824-01 TCGA-AG-3611-01A-01D-0824-01 TCGA-AG-3612-01A-01D-0824-01 TCGA-AG-3725-01A-11D-1732-01 TCGA-AG-3726-01A-02D-0903-01 TCGA-AG-3727-01A-01D-0903-01 TCGA-AG-3728-01A-01D-0903-01 TCGA-AG-3731-01A-11D-1732-01 TCGA-AG-3732-01A-11D-1656-01 TCGA-AG-3742-01A-11D-1656-01 TCGA-AG-3878-01A-02D-0903-01 TCGA-AG-3881-01A-01D-0903-01 TCGA-AG-3882-01A-01D-0903-01 TCGA-AG-3883-01A-02D-0903-01 TCGA-AG-3885-01A-01D-0903-01 TCGA-AG-3887-01A-01D-1428-01 TCGA-AG-3890-01A-01D-1428-01 TCGA-AG-3892-01A-01D-1428-01 TCGA-AG-3893-01A-01D-1428-01 TCGA-AG-3894-01A-01D-1428-01 TCGA-AG-3896-01A-01D-1428-01 TCGA-AG-3898-01A-01D-1428-01 TCGA-AG-3901-01A-01D-1428-01 TCGA-AG-3902-01A-01D-1428-01 TCGA-AG-3909-01A-01D-1428-01 TCGA-AG-3999-01A-01D-1428-01 TCGA-AG-4001-01A-02D-1428-01 TCGA-AG-4005-01A-01D-1428-01 TCGA-AG-4007-01A-01D-1428-01 TCGA-AG-4008-01A-01D-1428-01 TCGA-AG-4015-01A-01D-1428-01 TCGA-AG-4021-01A-01D-1732-01 TCGA-AG-4022-01A-01D-1732-01 TCGA-AG-A002-01A-01D-A003-01 TCGA-AG-A008-01A-01D-A003-01 TCGA-AG-A00C-01A-01D-A003-01 TCGA-AG-A00H-01A-01D-A008-01 TCGA-AG-A00Y-01A-02D-A003-01 TCGA-AG-A011-01A-01D-A003-01 TCGA-AG-A014-01A-02D-A003-01 TCGA-AG-A015-01A-01D-A003-01 TCGA-AG-A016-01A-01D-A003-01 TCGA-AG-A01J-01A-01D-A008-01 TCGA-AG-A01L-01A-01D-A003-01 TCGA-AG-A01N-01A-01D-A008-01 TCGA-AG-A01W-01A-21D-A080-01 TCGA-AG-A01Y-01A-41D-A080-01 TCGA-AG-A020-01A-21D-A080-01 TCGA-AG-A023-01A-01D-A008-01 TCGA-AG-A025-01A-01D-A008-01 TCGA-AG-A026-01A-32D-A080-01 TCGA-AG-A02G-01A-01D-A008-01 TCGA-AG-A02N-01A-11D-A080-01 TCGA-AG-A02X-01A-01D-A008-01 TCGA-AG-A032-01A-01D-A008-01 TCGA-AH-6544-01A-11D-1825-01 TCGA-AH-6547-01A-11D-1825-01 TCGA-AH-6643-01A-11D-1825-01 TCGA-AH-6644-01A-21D-1825-01 TCGA-AH-6897-01A-11D-1923-01 TCGA-AH-6903-01A-11D-1923-01 TCGA-BM-6198-01A-11D-1732-01 TCGA-CI-6619-01B-11D-1825-01 TCGA-CI-6620-01A-11D-1825-01 TCGA-CI-6621-01A-11D-1825-01 TCGA-CI-6622-01A-11D-1825-01 TCGA-CI-6623-01B-11D-1825-01 TCGA-CI-6624-01C-11D-1825-01 TCGA-CL-4957-01A-01D-1732-01 TCGA-CL-5917-01A-11D-1656-01 TCGA-CL-5918-01A-11D-1656-01 TCGA-DC-4745-01A-01D-1732-01 TCGA-DC-4749-01A-01D-1732-01 TCGA-DC-5337-01A-01D-1656-01 TCGA-DC-5869-01A-01D-1656-01 TCGA-DC-6154-01A-31D-1923-01 TCGA-DC-6155-01A-11D-1656-01 TCGA-DC-6156-01A-11D-1656-01 TCGA-DC-6157-01A-11D-1656-01 TCGA-DC-6158-01A-11D-1656-01 TCGA-DC-6160-01A-11D-1656-01 TCGA-DC-6681-01A-11D-1825-01 TCGA-DC-6682-01A-11D-1825-01 TCGA-DC-6683-01A-11D-1825-01 TCGA-DT-5265-01A-21D-1825-01 TCGA-DY-A0XA-01A-11D-A151-01 TCGA-DY-A1DC-01A-31D-A151-01 TCGA-DY-A1DD-01A-21D-A151-01 TCGA-DY-A1DE-01A-11D-A151-01 TCGA-DY-A1DF-01A-11D-A151-01 TCGA-DY-A1DG-01A-11D-A151-01 TCGA-DY-A1H8-01A-21D-A151-01 TCGA-EF-5830-01A-01D-1656-01 TCGA-EF-5831-01A-01D-1656-01 TCGA-EI-6506-01A-11D-1732-01 TCGA-EI-6507-01A-11D-1732-01 TCGA-EI-6508-01A-11D-1732-01 TCGA-EI-6509-01A-11D-1732-01 TCGA-EI-6510-01A-11D-1732-01 TCGA-EI-6511-01A-11D-1732-01 TCGA-EI-6512-01A-11D-1732-01 TCGA-EI-6513-01A-21D-1732-01 TCGA-EI-6514-01A-11D-1732-01 TCGA-EI-6881-01A-11D-1923-01 TCGA-EI-6882-01A-11D-1923-01 TCGA-EI-6883-01A-31D-1923-01 TCGA-EI-6884-01A-11D-1923-01 TCGA-EI-6885-01A-11D-1923-01 TCGA-EI-6917-01A-11D-1923-01 TCGA-EI-7002-01A-11D-1923-01 TCGA-EI-7004-01A-11D-1923-01 TCGA-F5-6464-01A-11D-1732-01 TCGA-F5-6465-01A-11D-1732-01 TCGA-F5-6571-01A-12D-1825-01 TCGA-F5-6702-01A-11D-1825-01 TCGA-F5-6810-01A-11D-1825-01 TCGA-F5-6811-01A-11D-1825-01 TCGA-F5-6812-01A-11D-1825-01 TCGA-F5-6813-01A-11D-1825-01 TCGA-F5-6814-01A-31D-1923-01 TCGA-F5-6861-01A-11D-1923-01 TCGA-F5-6863-01A-11D-1923-01 TCGA-F5-6864-01A-11D-1923-01 TCGA-G5-6233-01A-11D-1732-01 TCGA-G5-6235-01A-11D-1732-01 TCGA-G5-6572-01A-11D-1825-01 TCGA-G5-6641-01A-11D-1825-01 Amplification Peak 1 1q21.3 chr1:120523956-163100192(probes 67534:74833) chr1:150262482-150637493(probes 67687:67762) chr1:120527362-154123861(probes 67535:69478) 0.025154 0.042454 0: t<0.1; 1: 0.10.9 1 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 2 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 2 0 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 2 1 0 0 1 0 0 1 0 1 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 2 0 0 0 1 0 0 1 0 0 1 0 1 0 1 1 Amplification Peak 2 1q32.1 chr1:183052034-249250621(probes 88005:128610) chr1:205437538-205459510(probes 101589:101605) chr1:205437538-205461534(probes 101589:101608) 0.14328 0.18287 0: t<0.1; 1: 0.10.9 0 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 2 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 1 0 2 1 0 0 1 0 0 1 0 1 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 0 0 0 1 0 0 1 0 0 1 0 1 0 1 1 Amplification Peak 3 6p21.1 chr6:41530330-45044523(probes 592090:593974) chr6:43033918-43136916(probes 592893:592940) chr6:42366439-45044579(probes 592574:593976) 0.02906 0.02906 0: t<0.1; 1: 0.10.9 1 0 0 1 0 2 0 1 2 1 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 2 1 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 0 0 0 0 2 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 0 2 0 0 1 1 0 1 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 1 Amplification Peak 4 8p11.23 chr8:38170522-38469302(probes 766465:766600) chr8:38171487-38312761(probes 766466:766526) chr8:38147031-38804225(probes 766454:766743) 8.4017e-05 0.00046365 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 2 0 1 0 0 0 0 2 0 1 0 0 2 1 0 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 1 0 0 1 0 2 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 1 1 0 0 0 1 0 0 0 2 1 0 2 1 0 0 0 0 0 0 1 1 1 0 0 2 0 0 0 1 2 0 1 2 0 1 0 0 0 0 1 0 1 0 0 1 0 0 2 1 0 0 0 0 0 1 0 1 0 2 0 1 0 0 0 1 1 0 1 0 Amplification Peak 5 8p11.21 chr8:41352076-41641623(probes 768254:768444) chr8:41492055-41597241(probes 768327:768400) chr8:40933427-42330101(probes 767995:768898) 0.0014039 0.0026152 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 2 0 1 1 0 2 1 0 2 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 2 0 1 0 0 0 0 1 1 0 1 0 2 0 1 2 0 1 0 1 0 0 0 0 2 0 2 0 2 2 0 1 0 1 0 2 0 2 1 0 0 1 1 1 1 1 0 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 1 1 1 1 0 0 1 1 0 2 1 2 1 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 2 1 2 0 0 0 0 1 0 1 0 1 0 0 0 0 2 2 1 1 1 1 Amplification Peak 6 8q24.21 chr8:128204396-128652497(probes 815362:815687) chr8:128402264-128415260(probes 815494:815506) chr8:70963373-146364022(probes 782493:825662) 5.7391e-10 5.7391e-10 0: t<0.1; 1: 0.10.9 1 1 2 1 1 0 1 2 1 0 1 0 2 1 2 1 0 1 0 2 0 0 2 0 2 1 2 2 1 0 1 2 0 2 2 0 2 0 0 0 2 0 1 2 0 2 1 2 0 1 0 1 0 1 1 0 0 0 1 1 0 2 1 2 1 1 1 2 1 2 1 0 0 0 1 1 2 2 0 2 2 0 2 1 2 0 1 0 2 0 2 2 1 1 1 1 1 0 0 1 1 0 1 0 1 1 0 2 1 1 1 0 1 2 1 1 1 1 0 0 1 1 0 2 2 2 0 1 0 1 2 1 0 0 0 1 0 1 0 1 1 0 0 2 1 2 0 0 0 1 1 0 1 1 1 0 0 1 0 2 2 1 1 1 1 Amplification Peak 7 10q22.2 chr10:73426159-83489711(probes 935466:941294) chr10:76093190-76378028(probes 936642:936772) chr10:76093190-78458823(probes 936642:938088) 0.13718 0.13718 0: t<0.1; 1: 0.10.9 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 8 11p15.5 chr11:2157956-2241214(probes 974327:974344) chr11:2171893-2238395(probes 974328:974343) chr11:2138140-2294536(probes 974317:974360) 0.0012726 0.0012726 0: t<0.1; 1: 0.10.9 0 2 1 0 2 0 0 0 1 0 1 0 1 1 0 1 0 1 1 0 2 0 0 1 0 0 1 1 1 2 0 0 0 0 0 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 1 0 1 0 1 0 0 0 1 1 2 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 Amplification Peak 9 11q13.3 chr11:69661335-69806082(probes 1010233:1010257) chr11:69663182-69800155(probes 1010234:1010256) chr11:69663182-69807193(probes 1010234:1010259) 0.19252 0.19252 0: t<0.1; 1: 0.10.9 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 1 0 1 1 0 1 1 2 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 Amplification Peak 10 12p13.33 chr12:1-4369146(probes 1050659:1052469) chr12:1053751-2349583(probes 1050731:1051139) chr12:1-2871146(probes 1050659:1051474) 0.027505 0.13344 0: t<0.1; 1: 0.10.9 0 0 0 0 0 1 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 2 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 2 0 2 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 2 Amplification Peak 11 12p12.1 chr12:24753749-26629748(probes 1064545:1065802) chr12:25402469-25593415(probes 1064884:1065013) chr12:23555731-26632895(probes 1063710:1065804) 0.0023433 0.12542 0: t<0.1; 1: 0.10.9 0 0 0 0 0 2 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 2 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 Amplification Peak 12 13q12.13 chr13:27521847-27539800(probes 1128455:1128468) chr13:27523027-27538842(probes 1128456:1128467) chr13:1-48329225(probes 1124129:1142334) 8.6968e-15 0.00057242 0: t<0.1; 1: 0.10.9 1 1 1 1 1 2 0 2 2 2 2 2 1 1 2 1 2 0 0 0 0 1 2 1 0 2 2 1 2 1 2 0 0 0 2 1 1 0 2 1 2 2 0 1 2 0 0 2 0 0 2 1 2 1 1 0 2 1 2 0 0 1 1 2 1 2 1 1 2 2 2 0 0 2 2 2 1 2 2 2 0 2 0 0 0 0 1 1 1 2 0 0 2 1 0 1 1 2 0 0 1 2 1 2 2 1 1 2 1 1 1 1 1 2 0 2 1 1 1 0 1 2 0 2 2 2 2 2 1 1 1 2 1 0 1 2 1 1 1 1 2 2 0 1 2 0 0 2 1 2 1 2 2 1 1 2 1 0 0 2 2 2 1 1 1 Amplification Peak 13 13q12.2 chr13:28385587-28773237(probes 1129057:1129340) chr13:28391954-28615700(probes 1129058:1129187) chr13:1-48329225(probes 1124129:1142334) 1.0776e-16 6.7143e-12 0: t<0.1; 1: 0.10.9 1 1 1 1 1 2 0 2 2 2 0 2 1 1 2 1 2 0 0 0 0 1 2 1 0 2 1 1 2 1 2 0 0 0 2 1 1 0 2 1 2 2 0 1 2 0 0 1 0 0 2 1 2 1 1 0 2 1 2 0 0 1 1 2 1 2 1 1 2 2 2 0 0 2 2 2 1 2 2 2 0 2 0 0 0 0 1 1 1 2 0 2 2 1 0 1 1 1 0 0 1 0 1 2 2 1 1 2 1 1 2 1 1 2 0 2 1 1 1 0 1 2 0 2 2 2 1 2 1 1 1 2 1 0 1 2 1 1 1 1 2 2 0 1 2 0 0 2 2 2 1 2 2 1 1 2 1 0 0 2 2 2 1 1 1 Amplification Peak 14 13q22.1 chr13:73577729-74250466(probes 1154543:1155030) chr13:73642878-73690934(probes 1154574:1154600) chr13:66653994-85545026(probes 1150839:1161932) 6.0849e-05 0.051646 0: t<0.1; 1: 0.10.9 1 1 1 1 1 2 0 2 2 2 0 2 1 1 2 1 1 0 0 0 0 1 2 1 0 2 1 1 2 2 0 0 0 0 2 1 1 0 2 1 2 2 0 2 2 0 0 1 0 0 2 1 2 1 1 0 2 1 2 0 0 1 1 2 1 2 1 1 2 0 2 0 0 2 2 2 0 2 2 2 0 2 0 1 1 0 1 1 2 2 0 0 2 1 0 1 1 1 0 0 1 0 1 2 2 1 1 2 1 1 1 1 1 2 0 1 1 2 1 0 1 1 1 2 2 2 1 2 2 1 1 0 1 0 0 2 1 1 1 1 2 2 0 1 2 0 0 1 0 1 1 2 1 1 1 2 1 0 0 2 0 2 1 2 1 Amplification Peak 15 16p11.2 chr16:30581939-30943981(probes 1287085:1287210) chr16:30586136-30942712(probes 1287086:1287209) chr16:30586136-30946505(probes 1287086:1287212) 0.1305 0.1305 0: t<0.1; 1: 0.10.9 0 1 0 0 0 0 0 1 2 0 0 1 1 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 2 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 2 2 2 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 1 0 0 0 1 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 2 0 0 0 0 1 0 0 0 0 0 Amplification Peak 16 17q12 chr17:37837542-37876018(probes 1329365:1329404) chr17:37839410-37875908(probes 1329366:1329403) chr17:37175136-38117900(probes 1329082:1329518) 2.7454e-08 1.1145e-07 0: t<0.1; 1: 0.10.9 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 2 1 1 1 0 0 0 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 2 0 1 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 2 0 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 1 0 1 0 1 Amplification Peak 17 17q24.1 chr17:52638967-71116693(probes 1336024:1347227) chr17:63251945-63390028(probes 1341955:1342053) chr17:63251945-63561795(probes 1341955:1342157) 0.15915 0.19252 0: t<0.1; 1: 0.10.9 0 2 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 0 2 0 0 2 0 0 2 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 2 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 Amplification Peak 18 20q11.21 chr20:26196264-33343047(probes 1433816:1435481) chr20:30680353-31004856(probes 1434206:1434344) chr20:22107162-40360025(probes 1431438:1439559) 1.9519e-21 1.7256e-10 0: t<0.1; 1: 0.10.9 2 2 2 2 0 1 0 2 1 2 1 1 2 1 2 2 2 2 0 0 1 2 2 1 2 1 2 1 2 2 0 2 2 0 2 1 1 2 2 1 2 1 1 1 2 1 0 2 1 0 2 2 1 1 2 0 2 1 1 2 1 1 2 2 2 1 2 2 2 0 2 0 1 2 2 2 1 2 2 2 2 2 2 1 1 2 1 0 2 2 0 1 2 1 1 1 2 1 1 1 1 0 2 2 2 1 2 2 2 2 2 2 2 2 1 1 2 2 1 1 1 2 0 2 2 2 2 1 2 2 1 2 1 0 1 1 1 2 2 2 2 1 0 2 1 2 0 2 0 1 2 2 2 2 2 2 2 1 1 2 2 1 1 2 1 Amplification Peak 19 20q11.23 chr20:35722356-40357006(probes 1436613:1439542) chr20:36468414-36472178(probes 1437043:1437049) chr20:22107162-40360025(probes 1431438:1439559) 7.719e-21 2.0513e-11 0: t<0.1; 1: 0.10.9 2 2 2 2 0 1 0 2 2 2 1 1 2 1 2 2 2 2 0 0 1 2 2 1 2 1 1 1 2 2 0 2 2 0 2 1 1 2 2 1 2 1 2 2 2 1 0 2 1 0 2 2 1 1 2 0 2 1 1 2 1 1 2 1 2 1 2 2 2 0 2 0 1 2 2 2 1 2 2 2 2 2 2 1 1 2 1 0 2 2 0 1 2 1 1 1 2 1 1 1 1 1 2 2 2 1 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 2 0 2 2 2 1 1 2 2 1 2 1 0 1 1 1 2 2 2 2 1 0 2 1 2 0 2 0 1 2 2 2 2 2 2 2 1 1 2 2 1 1 2 1 Amplification Peak 20 20q13.33 chr20:60123501-63025520(probes 1453247:1454119) chr20:62142486-63025520(probes 1454098:1454119) chr20:60126028-63025520(probes 1453248:1454119) 0.033971 0.10286 0: t<0.1; 1: 0.10.9 2 2 2 2 1 1 0 2 1 2 1 1 2 1 2 2 2 2 0 0 1 2 2 2 2 1 1 1 2 2 0 2 2 0 2 1 1 2 2 1 2 1 2 1 2 1 0 2 1 0 2 2 1 1 1 0 2 1 1 2 1 1 2 0 2 1 2 2 2 0 2 0 1 2 2 2 1 2 2 2 2 2 2 1 1 2 1 0 2 2 0 1 2 1 1 1 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 0 2 2 2 1 1 0 2 1 2 1 0 1 1 1 2 2 2 2 1 0 2 1 2 0 2 0 1 2 2 2 2 2 2 2 1 1 2 2 1 1 2 1 Amplification Peak 21 Xp22.2 chrX:1-28634031(probes 1491263:1502306) chrX:13470941-14892611(probes 1494866:1495786) chrX:13470941-14895431(probes 1494866:1495789) 0.13718 0.13718 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 2 0 2 0 0 0 0 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 Amplification Peak 22 Xq27.3 chrX:131802289-155270560(probes 1543818:1553777) chrX:142743660-142769043(probes 1548468:1548490) chrX:142644027-142769585(probes 1548403:1548493) 0.14805 0.14805 0: t<0.1; 1: 0.10.9 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 2 0 0 2 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 Deletion Peak 1 1p36.11 chr1:3814904-31841618(probes 308:14917) chr1:27689911-27704889(probes 12868:12870) chr1:1-34557128(probes 1:16321) 2.1758e-10 5.3562e-10 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 1 1 0 0 1 1 0 1 0 0 1 1 1 0 0 1 0 0 1 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 1 1 1 0 1 1 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 1 1 0 1 0 1 1 0 0 1 1 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 1 0 0 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 1 Deletion Peak 2 1p33 chr1:49615826-50514967(probes 24529:24822) chr1:48998362-50492467(probes 24071:24816) chr1:49442393-49450203(probes 24444:24445) 4.171e-05 0.00068561 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 1 0 0 0 0 1 0 1 0 0 1 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 1 0 0 1 0 1 1 1 0 0 1 1 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 Deletion Peak 3 1p13.2 chr1:104063143-119802060(probes 57915:67050) chr1:114629216-114701092(probes 63820:63876) chr1:111787873-115448338(probes 62036:64317) 0.013822 0.027723 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 1 0 1 0 1 0 Deletion Peak 4 2p12 chr2:56408180-96881977(probes 161312:179101) chr2:76974256-77826128(probes 173134:173631) chr2:77412860-77415393(probes 173383:173384) 0.19022 0.1927 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 5 3p14.2 chr3:59702822-61026498(probes 292643:292644) chr3:59702822-61238217(probes 292643:292841) chr3:59705136-61307437(probes 292644:292892) 5.2516e-09 5.103e-09 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 Deletion Peak 6 3q26.31 chr3:174345545-175760559(probes 353580:354110) chr3:174148679-175760559(probes 353489:354110) chr3:174572180-174707049(probes 353732:353810) 1.4567e-09 1.4567e-09 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 Deletion Peak 7 4p13 chr4:31148303-52714468(probes 384079:393384) chr4:42890649-43326199(probes 391010:391014) chr4:42895716-43326199(probes 391013:391014) 0.14076 0.14469 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 0 0 1 1 0 1 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 1 0 1 1 0 1 0 1 0 1 1 0 1 1 1 1 1 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 1 Deletion Peak 8 4q22.1 chr4:91271445-93240505(probes 415206:416141) chr4:91035787-92525194(probes 415043:415828) chr4:91241678-92365315(probes 415175:415795) 1.3622e-22 3.6358e-22 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 1 1 1 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 1 1 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 1 1 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 1 0 1 0 0 1 1 1 1 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 1 Deletion Peak 9 4q35.1 chr4:178100730-191154276(probes 462483:467519) chr4:185307011-185399897(probes 465833:465920) chr4:178201258-191154276(probes 462559:467519) 4.2375e-05 0.0049957 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 1 1 1 1 1 1 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 0 1 1 1 0 0 1 0 1 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 1 0 1 0 0 1 1 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 1 0 1 0 0 1 1 0 0 1 Deletion Peak 10 5q12.1 chr5:58998410-59780946(probes 498999:499385) chr5:58260298-59818245(probes 498454:499410) chr5:58614931-61011058(probes 498697:500055) 1.8791e-10 4.1152e-10 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 0 1 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 1 Deletion Peak 11 5q22.2 chr5:102895125-114460579(probes 521205:528092) chr5:112039093-112191641(probes 526455:526672) chr5:103029307-125018569(probes 521275:534225) 3.6426e-06 0.00046465 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 0 0 0 1 1 0 0 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 1 0 0 0 0 0 1 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 0 1 1 1 0 0 1 0 0 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 Deletion Peak 12 6p25.3 chr6:1608837-2624052(probes 568068:568761) chr6:1621405-2252425(probes 568071:568488) chr6:1728011-2021707(probes 568159:568344) 0.0071819 0.0071906 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 13 6q26 chr6:161693099-163153207(probes 659160:659806) chr6:161767520-163153207(probes 659201:659806) chr6:162132257-162136708(probes 659504:659505) 2.9081e-13 2.9081e-13 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 1 1 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 Deletion Peak 14 7q31.1 chr7:110746146-111366370(probes 719668:719695) chr7:110236682-111354928(probes 719410:719689) chr7:110535012-110544716(probes 719550:719551) 0.01028 0.010707 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 15 8p23.2 chr8:3548028-4251283(probes 746025:746389) chr8:2784419-4854274(probes 745313:746724) chr8:1-33228198(probes 744545:764044) 7.8512e-16 7.8512e-16 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 1 1 1 1 1 1 0 0 1 1 1 0 1 0 0 0 1 0 0 1 0 1 1 1 1 1 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 0 1 1 0 1 0 1 0 0 1 0 1 0 1 0 0 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 0 0 1 0 1 0 0 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 1 1 1 0 1 1 1 0 1 1 1 0 1 1 0 0 1 1 1 0 0 1 Deletion Peak 16 8q11.1 chr8:11648790-90944738(probes 749558:793441) chr8:42932479-47463861(probes 769155:769156) chr8:42933373-47464064(probes 769156:769157) 0.20625 0.21034 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 Deletion Peak 17 10q21.1 chr10:53057593-54077929(probes 923157:923939) chr10:52739810-54061437(probes 922905:923928) chr10:53303711-53418487(probes 923352:923437) 0.0014146 0.0017045 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 0 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 1 1 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 Deletion Peak 18 10q25.2 chr10:86084854-135534747(probes 943216:973838) chr10:114706629-114933610(probes 960584:960714) chr10:101378924-115244595(probes 952477:960957) 0.014135 0.036487 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 1 Deletion Peak 19 11q22.3 chr11:101318898-126876165(probes 1029186:1045845) chr11:107743293-107981570(probes 1032887:1032901) chr11:107962205-107969368(probes 1032895:1032896) 0.054114 0.055439 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 1 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 20 12q13.2 chr12:6791349-106699397(probes 1054328:1110209) chr12:12913904-91452893(probes 1057244:1100058) chr12:12520919-14265170(probes 1056974:1058154) 0.064633 0.067516 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 Deletion Peak 21 14q11.2 chr14:1-21820453(probes 1180415:1181163) chr14:20895647-20905249(probes 1180667:1180678) chr14:1-24499753(probes 1180415:1181904) 0.0043084 0.0043676 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 1 1 1 1 0 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 1 0 1 0 1 0 1 0 0 0 0 1 1 1 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 0 1 0 1 0 1 0 1 1 0 0 1 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 1 0 1 1 1 0 0 0 1 0 1 1 0 1 Deletion Peak 22 14q31.1 chr14:64110071-107349540(probes 1204246:1229576) chr14:81668556-81672105(probes 1215022:1215023) chr14:81645018-81768924(probes 1215011:1215077) 0.189 0.1927 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 1 1 0 1 0 1 0 1 1 0 0 0 0 1 1 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 1 1 0 1 0 1 0 1 1 0 0 1 1 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 0 1 0 1 1 1 0 0 0 1 0 1 1 0 1 Deletion Peak 23 15q21.1 chr15:1-63139365(probes 1229577:1251615) chr15:45001788-45013397(probes 1239879:1239888) chr15:42542815-45582379(probes 1238871:1240070) 0.025797 0.097939 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 0 0 1 0 1 0 0 0 1 0 1 1 0 0 1 0 0 1 1 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 1 1 1 0 1 1 0 1 1 0 1 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 1 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 0 1 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 1 1 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 1 1 1 1 1 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 1 Deletion Peak 24 15q22.33 chr15:67067796-67494822(probes 1253787:1254127) chr15:67350488-67491246(probes 1254012:1254125) chr15:67218892-67751852(probes 1253877:1254264) 4.0204e-06 1.2808e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 0 1 1 0 1 0 0 0 1 0 1 0 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 0 1 0 0 0 1 0 1 1 1 0 0 1 0 0 1 0 1 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 1 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 1 1 0 1 0 1 0 0 0 1 1 0 0 1 0 1 0 1 0 0 0 1 1 0 0 1 1 1 1 1 0 1 1 0 0 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 0 0 1 1 0 1 1 1 0 0 0 1 1 0 0 1 Deletion Peak 25 16p13.3 chr16:5144019-7780235(probes 1275449:1276928) chr16:6066397-7771745(probes 1276080:1276916) chr16:7369731-7376241(probes 1276499:1276500) 2.5201e-36 2.5201e-36 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 Deletion Peak 26 16q23.1 chr16:78098006-79299841(probes 1306760:1307825) chr16:78129058-79247026(probes 1306791:1307796) chr16:78583258-78586506(probes 1307294:1307295) 3.8419e-05 3.8419e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 Deletion Peak 27 17p11.2 chr17:8300098-25626166(probes 1317696:1323945) chr17:14131834-21256583(probes 1321661:1323795) chr17:15569109-15579289(probes 1321667:1321668) 0.077076 0.075861 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 1 1 1 1 1 0 1 0 1 1 0 1 1 1 0 1 1 0 1 1 0 1 1 1 1 0 1 1 0 0 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 1 0 1 1 0 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 0 1 0 0 1 0 1 0 1 1 1 0 1 1 1 1 1 0 0 1 0 1 0 1 0 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 1 1 1 1 0 1 1 0 0 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 0 0 Deletion Peak 28 18p11.31 chr18:1408050-3820764(probes 1351323:1352488) chr18:2535815-3029228(probes 1351830:1351994) chr18:2547301-2783455(probes 1351833:1351834) 0.078666 0.077076 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 1 1 1 1 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 0 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 0 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 0 Deletion Peak 29 18q21.2 chr18:48472083-48705371(probes 1377409:1377613) chr18:48491525-48616860(probes 1377412:1377567) chr18:44824362-78077248(probes 1374772:1393404) 1.8121e-09 5.5409e-08 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 Deletion Peak 30 18q22.1 chr18:65181982-66383463(probes 1387597:1388124) chr18:66338558-66383463(probes 1388091:1388124) chr18:44824362-78077248(probes 1374772:1393404) 7.5766e-06 0.02601 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 Deletion Peak 31 18q23 chr18:74301825-78077248(probes 1391777:1393404) chr18:74684212-74849999(probes 1391951:1392031) chr18:44824362-78077248(probes 1374772:1393404) 1.8694e-05 0.0058333 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 Deletion Peak 32 19p13.3 chr19:1-59128983(probes 1393405:1417102) chr19:1-4183306(probes 1393405:1394322) chr19:1-4182938(probes 1393405:1394321) 0.23023 0.23047 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 Deletion Peak 33 20p12.1 chr20:14301156-15274325(probes 1425843:1426070) chr20:13965126-16036135(probes 1425678:1426793) chr20:12334082-15797505(probes 1424588:1426546) 2.6061e-24 2.6061e-24 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 Deletion Peak 34 21q11.2 chr21:1-15447211(probes 1454120:1454140) chr21:1-15377835(probes 1454120:1454120) chr21:1-26649218(probes 1454120:1460994) 6.2801e-07 6.2801e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 0 0 1 0 0 0 1 0 1 1 1 1 0 1 1 1 0 0 1 1 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 1 1 0 0 1 1 0 1 0 1 0 0 1 1 1 1 1 0 1 0 0 1 1 1 0 1 0 0 0 0 0 1 1 0 0 1 0 1 1 1 0 1 0 1 0 1 0 0 1 Deletion Peak 35 22q13.31 chr22:44391372-51304566(probes 1487745:1491262) chr22:46063576-46242166(probes 1488971:1489100) chr22:44205320-51304566(probes 1487565:1491262) 0.00082955 0.00082955 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 1 0 0 0 1 0 1 0 1 0 1 0 0 1 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 1 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 1 1 0 0 1 1 0 1 0 1 0 0 1 1 0 1 1 0 0 1 0 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 1 0 1 0 0 1 Deletion Peak 36 Xp22.33 chrX:1-8143331(probes 1491263:1492030) chrX:1-4472941(probes 1491263:1491494) chrX:1-4476246(probes 1491263:1491498) 0.077076 0.077076 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 Amplification Peak 1 - CN values 1q21.3 chr1:120523956-163100192(probes 67534:74833) chr1:150262482-150637493(probes 67687:67762) chr1:120527362-154123861(probes 67535:69478) 0.025154 0.042454 Actual Copy Change Given 0.1676 -0.012551 -0.30045 0.015462 0.58668 0.15651 0.049398 0.0084743 -0.0090674 0.42478 0.00027728 0.25473 -0.0015243 0.76734 0.0063976 -0.21895 -0.32751 -0.0079769 0.0016642 0.47495 0.0047725 0.01433 -0.11822 0.015168 0.02806 0.0018143 0.43614 0.67604 -0.010784 0.45326 0 -0.010508 0.010424 0.085221 0.75891 0.0085664 0.044148 -0.0077482 3.5449 0.98204 0.0011093 0.041317 0.0037465 0.016941 0.01447 -0.16396 0.017895 0.020903 -0.0031859 0.46759 0.43851 0.015509 0.0030315 0.0074535 -0.040613 0.0072833 0.0065262 0.031436 -0.19037 0.051103 0.04259 0.010424 -0.30028 1.2155 -0.17778 0.022986 -0.0073339 -0.040116 0.027497 0.012934 0.0015255 0.0094491 0.011053 0.015168 -0.23594 0.42654 0.78196 0.0053392 1.8285 0.01818 0.0084743 -0.30645 0.8412 0.39253 0.66678 -0.027651 0.00013863 0.0048579 0.68626 0.54312 0.0049969 0.022024 0.5238 0.010703 -0.0030475 1.0388 0.757 -0.0073339 -0.00055444 0.74555 0.053948 0.0056919 0.2236 0.0062481 0.35741 0.24124 0.0052472 -0.01408 -0.06299 -0.028218 0.47686 0.00083195 -0.21057 -0.0059522 0.20254 0.20723 -0.2497 0.055759 0.010146 0.026373 -0.069992 0 -0.039029 0.031436 0.028879 0.0282 0.69922 0.5649 0.015866 -0.0012473 -0.15553 0.0099427 0.23824 0.0016642 -0.0012473 0.055088 -0.012989 0.015308 0.0028616 0.013911 -0.036265 0.031155 0.61136 0 0.11155 0.33561 0.0037465 0.46519 0 1.4769 0.018943 0.014677 -0.12927 0.35611 -0.036265 0.097472 0.50168 0.024268 -0.013099 0.66228 -0.0014476 0.28899 -0.0014659 0.57541 0.35489 Amplification Peak 2 - CN values 1q32.1 chr1:183052034-249250621(probes 88005:128610) chr1:205437538-205459510(probes 101589:101605) chr1:205437538-205461534(probes 101589:101608) 0.14328 0.18287 Actual Copy Change Given -0.25043 -0.012551 0.0031153 0.015462 0.55655 0.078808 0.049398 0.0073609 0.0035905 0.39123 0.00027728 0.25473 -0.0015243 0.76032 -0.011769 -0.22404 -0.33441 -0.0079769 0.0016642 0.48733 0.0047725 0.003276 -0.11822 0.015168 0.02806 0 0.387 0.68012 -0.015907 0.44884 0 -0.014916 0.010424 1.5712 -0.004694 0.0023562 1.2798 -0.0077482 -0.052979 0.99157 -0.018794 0.041317 0.019783 0.011636 0.01447 -0.16396 0.015595 0.020903 -0.0031859 0.46759 0.31502 -0.38332 0.0030315 -0.0151 -0.075608 -0.0020242 0.0065262 0.031436 -0.20212 0.35871 0.04259 0.010424 -0.31067 0.37255 -0.17778 0.012188 -0.016429 -0.040116 0.027497 0.043157 -0.025844 0.0073798 0.011053 0.029765 -0.23594 0.43251 -0.67674 0.0053392 1.7875 0.01818 0.0084743 -0.30645 0.8412 0.29362 -0.0030475 -0.030766 0.59458 0.0048579 0.66383 0.54312 0 0.022024 0.48852 0.33124 -0.0030475 1.0388 0.757 -0.0073339 -0.00055444 0.79936 0.053948 0.0056919 0.2236 0.0062481 0.35741 0.12432 -0.0054267 -0.019357 0 -0.028218 0.45901 0.00083195 -0.18922 -0.0059522 0.20548 0.20723 -0.2497 0 0.010146 0.026373 -0.042924 -0.0083851 0 0.031436 -0.018227 0 0.89376 0.5649 -0.59448 3.6569 -0.18441 0.0076392 0.23892 0.0016642 0 0.037359 -0.012989 0.0030522 0.0030522 0.010703 -0.061958 0.031155 0.61027 0 0.11155 0.33561 0 0.46519 0.42822 0.58488 0.018943 0.014677 -0.12927 0.35023 -0.062964 0.097472 0.50168 0.027076 -0.013099 0.56954 -0.0014476 0.13467 0.017255 0.57541 0.35489 Amplification Peak 3 - CN values 6p21.1 chr6:41530330-45044523(probes 592090:593974) chr6:43033918-43136916(probes 592893:592940) chr6:42366439-45044579(probes 592574:593976) 0.02906 0.02906 Actual Copy Change Given 0.42788 0 -0.25377 0.21071 -0.54724 1.1635 -0.10552 0.54753 1.5443 0.37324 -0.0016629 0.37323 -0.014916 -0.011335 0.053521 0.13954 -0.013677 -0.0078863 -0.0022168 0.05025 0.010564 -0.0051938 0.89989 0 0.74252 0.007094 0.33351 0.27663 0.50359 -0.27368 0.0026357 0.0075 0.0038854 0.94711 0.70983 0.88228 0.0052749 0.01447 0.70283 -0.23018 0.50898 0.5231 -0.0020784 0.015424 0.58309 -0.0012473 0.00056263 0.00069327 0.0062481 0.0091705 0.031549 0.38949 -0.046468 0.011353 0.040471 0 -0.0069195 0.003191 0.22262 0.049401 -0.052666 -0.0063668 0.016146 0 0.094672 0.43879 0.44359 -0.0067813 0.54965 3.6108 0.31494 0.012237 -0.50784 0 0.085012 0.098415 -0.6856 -0.015715 1.1247 1.062 -0.0071958 0.15988 0.40561 0.027076 -0.025248 0.013074 -0.0080244 -0.0034627 0.010564 0.05113 -0.00055444 0.032563 -0.043873 0.013492 -0.005261 -0.0019399 0.37117 0.0079175 0.0093098 0.16549 0.18965 0.0094662 0.47289 0.00097064 0.33343 -0.049695 0.008029 -0.012119 -0.0069195 3.0134 0.020868 0.0024969 0.50863 0.64249 0.050665 0.23076 0.19828 0.026588 0.013074 -0.035312 0.78543 -0.092294 -0.6014 0.026935 0.0076157 -0.017391 0.51951 0.63189 0.58166 -0.022881 -0.0010566 -0.0081624 0.13509 0.00013863 0.024548 0.015447 -0.0069195 1.7662 0.45854 0.02539 0 0.021603 0 0.036229 -0.015304 -0.024388 0.0030522 0 -0.01106 -0.046583 0.57148 0.094562 0.21177 0.31034 0.031436 0.11402 0.020063 0.03031 0.011149 -0.030318 -0.011479 0.29773 0 0 0.24918 Amplification Peak 4 - CN values 8p11.23 chr8:38170522-38469302(probes 766465:766600) chr8:38171487-38312761(probes 766466:766526) chr8:38147031-38804225(probes 766454:766743) 8.4017e-05 0.00046365 Actual Copy Change Given -0.04983 -0.48138 -0.35436 -0.41552 -0.52522 -0.6434 -0.17778 1.8844 -0.68562 0.057875 -0.015329 0.019168 0.49459 0.57077 -0.024896 0.90392 0.013145 0.86314 -0.0049844 -0.86367 -0.00097017 0 1.238 -0.00027724 0.13687 -0.76757 -0.6449 1.1573 0.33808 -0.32774 1.9006 -0.017391 0.040297 0.099288 0.42503 -0.0044312 0.25982 -0.002217 -0.093076 -0.19733 -0.051451 -0.09512 -0.74629 -0.82898 -0.43821 0.025952 -0.062622 -0.74612 -0.0059522 -0.35476 -0.029721 -0.41157 -0.015899 0.69945 -0.32727 -0.0056934 1.7518 -0.0087146 0.709 0.30649 -0.024251 0.74784 0.098851 -0.45561 0.14295 -0.48243 0.91077 -0.26781 -0.54613 -0.806 0.57402 0.008892 0.0093098 -0.023229 -0.68988 -0.84979 -0.69708 1.8009 -0.018198 -0.12262 -0.52604 -0.26221 0.88206 -0.19399 -0.044957 -0.29154 0.54083 -0.013264 -0.66105 -0.49099 -0.01037 -0.60729 0.4502 0.29565 -0.11273 0.46639 0.61915 -0.017666 -0.0030475 -0.47375 0.16145 0.010285 -0.43669 -0.011473 2.0315 0.24747 0.0025414 1.552 0.5625 -0.036265 -0.001836 -0.0071958 -0.26889 -0.048207 -0.42638 0.25423 0.39529 0.75233 -0.016017 0.0012481 2.1899 -0.04002 0.035242 -0.74994 0.64888 1.3207 -1.1298 0.53872 3.6569 0.0087854 0.436 -0.01775 -0.011749 -0.005814 -0.010094 0.75951 -0.052126 0.55283 -0.028901 0.00097064 0.1345 0.0091705 -0.0026322 1.1987 0.21499 -0.40539 -0.007732 -0.77905 0.0070826 -0.074544 0.55107 0.034746 0.67493 -0.17132 3.6569 -0.056338 0.32866 -0.018078 -0.0048185 -0.42237 0.81513 0.52225 0.038489 0.55531 -0.29898 Amplification Peak 5 - CN values 8p11.21 chr8:41352076-41641623(probes 768254:768444) chr8:41492055-41597241(probes 768327:768400) chr8:40933427-42330101(probes 767995:768898) 0.0014039 0.0026152 Actual Copy Change Given -0.06048 -0.48138 -0.36596 -0.41552 -0.52522 -0.032587 -0.17778 -0.01409 -0.08733 0.057875 -0.015329 0.019168 0.49459 0.57077 -0.024896 0.84459 0.013145 0.86314 -0.0049844 -0.86367 -0.00097017 0 1.238 -0.00027724 0.13687 0.70702 -0.6449 1.1573 0.33808 -0.86421 1.283 -0.017391 0.040297 0.099288 2.1774 -0.0044312 1.8198 -0.002217 -0.093076 -0.19733 -0.051451 -0.09512 -0.74629 -0.018807 -0.43821 0.025952 0.63172 -0.74612 -0.0059522 0.47804 -0.029721 1.0051 -1.2012 0.69945 -0.32727 -0.0056934 -0.025346 -0.0087146 0.709 0.30649 -0.024251 0.74784 0.098851 1.259 -0.20685 0.65381 0.91077 -0.26781 0.49787 -0.80567 0.57402 0.008892 0.0093098 0.0037465 -0.13005 2.1336 -0.69708 1.8009 -0.018198 1.0153 2.0874 -0.26221 0.88206 -0.20207 0.77714 0.09638 1.8029 -0.013264 1.2684 0.51246 -0.01037 0.010696 0.4502 0.27717 0.27332 0.46639 0.61915 -0.017666 -0.0030475 -0.50249 0.72301 0.010285 -0.43669 -0.011473 0.4977 0.29995 0.0025414 1.552 0.5625 -0.076309 -0.001836 -0.0071958 -0.26889 -0.048207 0.55105 0.25423 0.39529 0.80607 -0.016017 0.0012481 0.4321 0.69716 0.035242 0.94445 0.64888 1.3207 0.88455 0.53872 -0.11339 0.0087854 0.436 -0.01775 -0.011749 -0.005814 -0.010094 0.75951 -0.052126 0.55283 -0.028901 -0.051991 0.1345 0.0091705 -0.0026322 1.1987 0.21499 2.1339 -0.0045695 -0.77905 0.0070826 -0.074544 0.55107 0.034746 0.67493 -0.17132 0.12505 -0.056338 -0.05496 -0.018078 -0.0048185 1.2189 1.0001 0.52225 0.46115 0.55531 0.77406 Amplification Peak 6 - CN values 8q24.21 chr8:128204396-128652497(probes 815362:815687) chr8:128402264-128415260(probes 815494:815506) chr8:70963373-146364022(probes 782493:825662) 5.7391e-10 5.7391e-10 Actual Copy Change Given 0.30689 0.48986 1.0106 0.48856 0.14843 0.0066653 0.23628 1.3069 0.57805 0.057875 0.69727 0.027571 1.4977 0.57077 1.1981 0.84437 0.013632 0.8481 -0.026012 1.6961 -0.00097017 0 1.0329 0.01433 1.4581 0.69859 1.713 1.1573 0.46964 0.081322 0.69634 1.0992 0.043015 1.6025 1.4718 -0.0044312 0.93325 -0.010862 -0.059446 -0.19733 1.7439 -0.048883 0.6494 1.2258 0.07815 1.5905 0.75014 1.6713 -0.0059522 0.45683 -0.029721 0.35561 -0.059962 0.70695 0.23427 -0.0056934 -0.018078 -0.0087146 0.28732 0.30393 -0.029038 2.9612 0.35724 1.1884 0.6642 0.43516 0.88486 0.90835 0.51961 1.3031 0.60521 0.0033299 0.0093098 0.062508 0.2456 0.56543 1.5794 1.7935 -0.032463 2.393 2.0874 -0.27142 1.7159 0.36424 3.1433 0.09638 0.53872 -0.013264 1.1963 0.070817 1.3394 3.6569 0.40211 0.28977 0.28337 0.46639 0.78891 -0.017666 -0.0030475 0.18615 0.72301 0.010285 0.48406 -0.014778 0.52066 0.30457 0.018635 1.6397 0.64048 0.64873 0.39276 -0.0071958 0.41262 1.2757 0.82488 0.50244 0.38403 0.82775 -0.016017 0.0012481 0.43699 0.69716 0.035242 0.98556 1.2517 1.4994 0.0040862 0.57166 -0.11469 0.75433 1.0494 0.77637 -0.011749 -0.005814 -0.012078 0.76389 -0.052126 0.55283 -0.012438 0.7637 0.1345 0.0044411 -0.018807 1.1808 0.13243 3.1106 -0.0045695 0.029677 0.0075 0.87089 0.55107 0.03771 0.69167 0.24483 0.12505 -0.056338 -0.13962 0.1311 -0.0048185 1.1221 1.0519 0.52225 0.46115 0.55531 0.77406 Amplification Peak 7 - CN values 10q22.2 chr10:73426159-83489711(probes 935466:941294) chr10:76093190-76378028(probes 936642:936772) chr10:76093190-78458823(probes 936642:938088) 0.13718 0.13718 Actual Copy Change Given -0.24326 0.32715 -0.077551 -0.00085101 -0.20995 -0.0020784 -0.15784 0.0081959 -0.078028 0.030951 0.00021906 -0.085387 -0.020138 -0.45308 -0.010232 -0.22039 -0.0091286 0.0016642 0.006109 -0.86641 -0.0070576 -0.00027724 0.01447 0.022929 0.01922 -0.0048348 0.37012 -0.19862 -0.55313 -0.34171 -0.0053202 1.0923 -0.043336 -0.59721 -0.024935 0.012097 -0.017991 -0.011473 -0.94484 0 -0.0085766 -0.010646 0.011818 0.016802 -0.34492 -0.3668 0.011269 0 -0.0031859 1.8055 0.017684 -0.086916 -0.032119 -0.7602 -0.072538 -0.00049314 0.011121 -0.0026322 -0.19029 -0.046116 0.038489 -0.011335 -0.33436 0.38442 -0.041702 0.013581 -0.014152 0.0033299 -0.51475 0.0023581 -0.013815 0.011539 -0.53794 -0.9716 -0.24752 -0.08559 -0.69688 1.392 -0.014073 -0.016387 0.0093098 -0.31589 -0.053544 0.54224 0 3.0518 -0.00064126 0.00041593 -0.023292 -0.0041546 0.0023581 -0.62674 -0.039665 -0.0047079 -0.0013858 0.0026977 -0.0031859 -0.50939 -0.0015243 0.19724 1.2635 -0.093006 -0.067993 -0.65438 -0.03395 -0.21898 0.0095606 -0.011887 -0.007472 0.35888 -0.01825 -0.0078863 -0.0123 -0.0044312 -0.43301 -0.053967 -0.44739 0.033342 -0.021647 -0.0073339 -0.14772 -0.40112 0.031577 -0.048883 0.0078941 -0.005814 -0.50095 -0.60526 0.013911 0.0012481 0.073456 0.02525 -0.0010319 -0.0060904 0.0091705 -0.122 -0.03245 0.00458 -0.0037395 0.0054139 -0.16294 -0.24156 0.0068554 -0.030447 0.0065262 -0.06566 -0.0038779 -0.50898 0.0040243 -0.039476 -0.015054 -0.067222 -0.13755 -0.085319 -0.0051227 -0.37881 0.0054139 0.010424 -0.002743 0.00050304 -0.26877 0.071694 -0.021921 -0.66716 -0.13096 Amplification Peak 8 - CN values 11p15.5 chr11:2157956-2241214(probes 974327:974344) chr11:2171893-2238395(probes 974328:974343) chr11:2138140-2294536(probes 974317:974360) 0.0012726 0.0012726 Actual Copy Change Given 0.047268 1.0337 0.13694 -0.20708 1.6546 0.0094491 -0.040752 -0.0091286 0.50496 -0.26173 0.70288 -0.35595 0.55195 0.44562 -0.021373 0.11169 -0.022744 0.82275 0.7372 -0.39107 1.0026 -0.66346 0.00013921 0.77118 0.0038854 0.0013981 0.33658 0.68608 0.49119 1.1225 0.012356 -0.016292 -0.0073339 -0.58137 0 0.0080567 -0.014046 0 0.79001 0.49104 0.61803 0.0013868 0.010982 0.97661 0.011818 0.017404 -0.33825 -0.0015243 -0.0041546 -0.35464 0 -0.012713 -0.54503 0.025624 -0.011056 -0.00049314 0.015866 1.3919 -0.19743 -0.01106 -0.020687 0.0087528 0.006109 0.013264 0.18132 0.0061978 0.43125 0.0093601 0.023426 0 -0.019452 -0.0030475 -0.54804 0.0081959 0.10322 0.029184 -0.63472 -0.017603 -0.010215 -0.038034 -0.0026322 -0.32698 0.33496 0.0087528 -0.86594 0.091155 -0.007472 0 0.020063 0 0.0013868 -0.62988 -0.062764 -0.35476 -0.0024938 -0.44555 0 1.2353 -0.0038779 0.18313 -0.016704 0 0.14935 -0.0063668 0.32141 -0.10355 0.40858 -0.0045695 -0.0059522 0.034677 0.46378 0.78891 0.99156 0.51371 -0.42648 -0.20742 0.35218 0.038988 0.34453 -0.031496 0.066658 -0.064993 0.081899 0.33351 0.0054673 0.025952 -0.027149 -0.59517 -0.0096806 0 1.2885 0.41128 0.45343 0.00069327 0.00069327 -0.82684 -0.034495 0 -0.0071958 -0.0011087 0.31707 -0.28893 0.0019418 -0.01037 0 -0.046312 -0.0062286 -0.040616 -0.46323 -0.046041 -0.019314 0 0.073546 1.1001 0.2236 -0.020067 -0.59 -0.015604 0.8861 -0.036452 0.011576 0.45362 0.0051359 -0.012438 -0.0012473 Amplification Peak 9 - CN values 11q13.3 chr11:69661335-69806082(probes 1010233:1010257) chr11:69663182-69800155(probes 1010234:1010256) chr11:69663182-69807193(probes 1010234:1010259) 0.19252 0.19252 Actual Copy Change Given 0.047268 -0.015655 0.13694 -0.23897 -0.54451 -0.45597 -0.040752 -0.023499 0.50288 -0.26173 -0.0026322 -0.33589 -0.011887 -0.47469 -0.021373 0.11169 -0.022744 -0.0099565 0.7372 -0.40606 -0.0016629 -0.67169 0.00013921 0.0018262 0.0038854 0.015878 -0.12473 -0.74534 0.5055 0.076932 -0.6738 -0.016292 -0.0073339 -0.17449 -0.019007 -0.00055444 -0.027124 0 -0.12074 -0.83994 0.61607 0.0013868 0.010982 0.026471 0.011818 0.016985 -0.33825 -0.0015243 -0.0041546 0.017404 0 0.3633 -0.54503 -0.0010164 -0.011056 -0.00049314 0.022163 -0.0038779 -0.19743 0.0097851 -0.020687 0.0087528 0.0049165 0.013264 0.18132 0.0061978 0.41178 0.0068044 0.012795 0 -0.011611 -0.0030475 -0.54804 -0.0083005 0.10877 0.079159 0.0040243 -0.043403 -0.010215 -0.038034 -0.0026322 -0.32698 0.32125 0 0.78196 -0.1272 -0.007472 0 0.01433 0 -0.0012473 -0.62998 -0.062764 -0.35476 -0.0039565 -0.44555 -0.01048 0.44172 -0.0038779 -0.46175 -0.016704 0 0.14935 -0.0081022 0.32141 0.34096 -0.47366 -0.0045695 -0.0059522 0.074121 0.45037 -0.0060904 0.31791 0.51371 -0.42648 0.40817 0.37101 3.3787 -0.58161 -0.018765 0.066658 -0.064993 3.6569 -0.36556 0.0054673 -0.0080122 0.41487 -0.56475 -0.0096806 0 0.036 0.092605 -0.0051731 0.00069327 0.0095883 -0.83284 -0.034495 -0.00065141 -0.0071958 -0.0011087 0.29835 -0.28893 0.0019418 -0.01037 0 0.3013 -0.0062286 -0.040616 0.0054139 -0.046041 -0.019314 0 0.073546 0.2749 0.2236 -0.019518 -0.0049844 0.012516 -0.0031583 -0.036452 0.011576 0 0.0051359 -0.012438 -0.0012473 Amplification Peak 10 - CN values 12p13.33 chr12:1-4369146(probes 1050659:1052469) chr12:1053751-2349583(probes 1050731:1051139) chr12:1-2871146(probes 1050659:1051474) 0.027505 0.13344 Actual Copy Change Given 0.073115 -0.0089038 0.00089502 -0.19085 -0.55136 0.64103 0.26122 0.5546 -0.045923 0.45772 0.59134 -0.24186 0.022444 0.76542 -0.0089906 0.0076392 0.013213 0.85106 -0.0077482 0.015587 0.00083195 0.0030522 -0.006228 0.010703 0.013911 0.0083465 0.41965 -0.23802 -0.014778 -0.46908 0.65866 -0.026626 0.013492 0.81123 0.33664 -0.8235 0 -0.039665 0.65717 1.3911 -0.0069195 -0.00097017 0.67641 0.027735 -0.34021 1.4742 0.017971 -0.014375 -0.0023553 3.6569 0.018803 0.74347 -0.010203 0.65436 0.028766 -0.00090889 0.013585 0.0016642 0.16364 -0.1329 0 0.0093098 -0.012024 -0.031325 0.38386 0.0018916 -0.0098185 0.041621 -1.1205 -0.79978 0.41011 0.011261 0.047552 -0.21065 0.041317 -0.060883 0.03369 3.6402 1.2001 -0.0080244 0.01419 0.052028 -0.025893 -0.43431 0.012655 0.061079 0.001803 0.0055529 0.00597 0.54153 0.69428 0.021603 0.038771 0.02806 0.0022193 -0.024661 -0.01904 0 0.0097276 0.097826 -0.0018014 -0.56157 0 0.0019418 -0.015604 0.11477 0.083747 1.099 -0.034223 -0.063972 -0.053375 0 -0.073076 -0.0042929 -0.41795 -0.089916 -0.020549 -0.25509 0.00083195 0.00013863 0.14905 0.22182 0.15263 2.5533 0.031878 1.4479 -0.079284 -0.51166 -1.2368 0.75624 -0.01734 0 -0.0041546 0.52171 -0.0085766 -0.14734 0.52363 0.01419 0.41655 0.0075 -0.13781 -0.28013 0.0036076 0.036653 0.022725 0.3264 0.0044411 0.31129 0.0055529 -0.032587 -0.014503 -0.045569 -0.13271 -0.080802 0.012934 0.14407 -0.0023553 -0.0064184 0.0058587 -0.0075233 -0.058731 0.73817 0.0061569 -0.017803 3.6569 Amplification Peak 11 - CN values 12p12.1 chr12:24753749-26629748(probes 1064545:1065802) chr12:25402469-25593415(probes 1064884:1065013) chr12:23555731-26632895(probes 1063710:1065804) 0.0023433 0.12542 Actual Copy Change Given 0.073115 -0.0089038 -0.0096178 -0.19085 0.027357 3.6569 0.24918 0.5546 -0.63643 0.43843 0.59134 -0.24186 -0.0059522 0.76542 -0.0089906 0.0076392 0.013213 0.87249 -0.77812 0.015587 0.00083195 0.0030522 -0.006228 0.010703 0.013911 -0.0034514 0.41965 -0.24907 -0.014778 -0.46908 0.65866 0.0037465 0.013492 0.81123 0.42788 -0.75184 0 0.024523 0.75618 1.3911 -0.0069195 -0.00097017 0.67641 0.027735 -0.34021 1.5123 0.017971 0.0027745 -0.0023553 0.8298 0.0072217 0.3827 -0.054036 0.62127 0.034117 -0.00090889 0.013585 0.0016642 0.16364 -0.1329 0 0.0093098 -0.012024 3.6312 0.37969 0.0018916 -0.00069303 0.04344 -1.0415 0.33496 -0.0056757 0.011261 0.047552 -0.15693 0.041317 -0.085059 -0.017666 3.6402 1.2001 -0.0080244 0.01419 0 -0.025893 -0.43431 0.012655 0.048972 0.001803 0.0055529 0.008892 0.54153 0.69428 0.021603 0.038771 0.010982 0.0022193 -0.024661 -0.01904 0 0.0097276 0.097826 -0.0018014 0.52555 0 0.0019418 -0.015604 0.11477 0.083747 2.0426 -0.034223 -0.026714 0.017801 0 -0.073076 -0.0042929 -0.44715 -0.089916 -0.020549 -0.25509 0.00083195 0.00027728 0.14905 0.22182 0.15263 -0.024935 -0.0043807 0.012376 -0.083069 -0.54204 -1.2149 0.75624 -0.01734 0 -0.0073339 0.52171 -0.77073 -0.14734 0.52363 0.01419 0.42183 0.0075 -0.13781 -0.28013 0.0036076 0.0084743 -0.0013042 0.3264 0.0044411 0.31129 0.0055529 -0.032587 -0.014503 -0.045569 -0.13271 -0.080802 0.012934 -0.19381 -0.0023553 0.0114 0.0058587 -0.0075233 -0.058731 0.73817 0.0061569 -0.017803 3.6569 Amplification Peak 12 - CN values 13q12.13 chr13:27521847-27539800(probes 1128455:1128468) chr13:27523027-27538842(probes 1128456:1128467) chr13:1-48329225(probes 1124129:1142334) 8.6968e-15 0.00057242 Actual Copy Change Given 0.12049 0.40005 0.31907 0.66958 0.83392 1.6083 0.047268 1.8882 0.94096 1.2865 3.6569 1.2413 0.53274 0.57166 0.93284 0.4502 1.1821 -0.0080244 -0.79845 0.01447 -0.021307 0.63667 1.0111 0.72697 -0.019302 1.301 1.5193 0.27411 1.5561 0.62542 1.9925 -0.0081624 -0.0016629 -0.39919 1.5555 0.81947 0.17127 0.015727 2.4746 0.77258 1.9715 1.4139 -0.014366 0.69124 1.3487 0.0030522 0.084073 1.457 -0.00055444 0.029735 1.1405 0.48889 2.1626 0.67283 0.84101 -0.0038167 1.2884 0.69521 1.6252 -0.0096806 -0.0076101 0.41848 0.63106 1.3732 0.757 2.5101 0.88146 0.59176 0.97502 3.6569 2.4664 0.0047272 0.064511 1.1173 1.2944 2.0988 0.83215 3.6569 2.4978 2.3663 -0.010784 2.6372 0 0.08392 -0.014228 -0.14721 0.56578 0.81259 0.6524 1.4233 -0.013625 0.016845 2.2082 0.35398 0.095072 0.44342 0.73644 0.97812 -0.00070853 0.091438 0.53801 3.0602 0.22947 1.1894 1.4205 0.73341 0.89544 1.5347 0.61559 0.87607 0.50129 0.11081 0.53555 1.215 0.020611 2.1677 0.61571 0.53354 0.27244 0.082332 0.15169 1.2712 -0.55827 1.5357 1.312 1.5761 1.5743 3.4475 0.69036 0.89588 0.77599 1.3877 0.45598 0 0.73891 2.219 0.78138 0.59152 0.86394 0.78852 1.7342 1.3864 -0.0059522 0.57416 1.1484 0.0095883 -0.0008316 0.95734 0.44325 0.90674 0.55266 1.9866 3.6569 0.81377 0.68589 0.94517 0.75013 -0.07099 0.077027 1.3257 1.0274 2.0654 0.80558 0.56472 0.24793 Amplification Peak 13 - CN values 13q12.2 chr13:28385587-28773237(probes 1129057:1129340) chr13:28391954-28615700(probes 1129058:1129187) chr13:1-48329225(probes 1124129:1142334) 1.0776e-16 6.7143e-12 Actual Copy Change Given 0.10134 0.40005 0.31907 0.66958 0.83392 1.6083 0.047268 1.8882 0.94096 1.2865 -0.019589 1.2413 0.53274 0.57166 0.93284 0.4502 1.1821 -0.0080244 -0.79845 0.01447 -0.021307 0.63667 1.0111 0.72697 -0.019302 1.301 0.73322 0.27411 1.5561 0.62542 1.9925 -0.0081624 -0.0016629 -0.39919 1.5555 0.81947 0.17127 0.015727 2.4746 0.77258 1.9715 1.4139 -0.014366 0.69124 1.3487 0.0030522 0.084073 0.69241 -0.00055444 0.029735 1.1405 0.48889 2.1626 0.67283 0.25434 -0.0038167 1.2884 0.69521 1.6252 -0.014137 -0.0076101 0.41848 0.63106 1.3732 0.757 2.5101 0.88146 0.59176 0.97502 3.6569 2.4664 0.0047272 0.064511 1.1173 1.2944 2.0988 0.83215 3.6569 2.4978 2.3663 -0.010784 2.6372 0 0.08392 -0.014228 -0.14721 0.56578 0.81259 0.6524 1.4233 -0.013625 3.6569 2.2082 0.35398 0.095072 0.44342 0.73644 0.43614 -0.00070853 0.091438 0.53801 -0.023744 0.22947 1.1894 1.4205 0.73341 0.89544 1.5347 0.61559 0.87607 3.6569 0.11081 0.49355 3.6569 0.020611 2.1677 0.61571 0.53354 0.27244 0.082332 0.15169 1.9659 -0.55827 3.0072 1.312 1.5761 0.46049 3.4475 0.69036 0.89588 0.77599 1.3877 0.45598 0 0.73891 2.219 0.78138 0.59152 0.86394 0.78852 1.7342 1.3864 -0.0059522 0.57416 1.1484 0.0095883 -0.0008316 0.95734 1.2007 0.90674 0.55266 3.1154 3.6569 0.81377 0.68589 0.94517 0.75013 -0.07099 0.077027 1.3257 1.0274 2.0654 0.80558 0.56472 0.24793 Amplification Peak 14 - CN values 13q22.1 chr13:73577729-74250466(probes 1154543:1155030) chr13:73642878-73690934(probes 1154574:1154600) chr13:66653994-85545026(probes 1150839:1161932) 6.0849e-05 0.051646 Actual Copy Change Given 0.4844 0.39872 0.31907 0.66958 0.83392 1.6984 0.068952 1.8154 1.7729 1.1396 -0.0023553 1.2413 0.51329 0.57166 0.93284 0.47375 0.43504 -0.0080244 0.00083195 0.01447 0.00041593 0.63667 1.0287 0.72697 -0.012311 1.3196 0.73322 0.31081 1.5086 2.1465 -0.66031 -0.0081624 -0.0016629 -0.39919 1.6493 0.81947 0.1936 0.015727 3.4132 0.77258 1.9715 1.4139 -0.014366 2.0558 1.0369 0.0038854 -0.55446 0.69241 -0.00055444 0.029735 1.1405 0.38651 2.0033 0.65179 0.25434 -0.0038167 1.1492 0.69708 1.5755 -0.014137 -0.0076101 0.41848 0.63106 1.3807 0.757 3.6569 0.83027 0.59176 0.97502 -0.1517 2.418 0.0047272 0.064511 1.0925 1.263 2.359 -0.045228 3.6569 2.4306 2.4355 -0.010784 2.9247 0 0.11404 0.82392 -0.14721 0.54189 0.81259 1.5411 1.4233 -0.010784 0.010982 2.1305 0.35398 0.095072 0.44342 0.71589 0.43614 0.0079175 0.091438 0.53801 0.015587 0.22947 1.1894 1.2419 0.73341 0.44067 1.4464 0.61559 0.86652 0.55899 0.11081 0.51909 1.1901 0.020611 0.70179 0.60539 0.94517 0.2581 0.082332 0.5493 0.43166 0.63098 1.5968 1.1962 1.5761 0.48269 3.2271 1.3606 0.85222 0.77599 0.071966 0.45598 0 0.0034687 2.2208 0.75576 0.55313 0.86233 0.78852 1.6742 1.3258 -0.0059522 0.53135 1.0041 0.012097 -0.0008316 0.49632 -0.42079 0.89949 0.55266 1.8811 0.58059 0.81377 0.68589 0.94517 0.75013 -0.07099 0.089156 1.3257 -0.029038 1.5353 0.6559 1.1046 0.73625 Amplification Peak 15 - CN values 16p11.2 chr16:30581939-30943981(probes 1287085:1287210) chr16:30586136-30942712(probes 1287086:1287209) chr16:30586136-30946505(probes 1287086:1287212) 0.1305 0.1305 Actual Copy Change Given 0.052952 0.41055 -0.030205 0.0016786 0.020483 -0.034223 -0.056577 0.5088 2.7502 0.042244 -0.007295 0.38825 0.361 0.06494 0.12579 0.13643 0.03031 0.012934 -0.0069195 0.028341 -0.020549 0.018214 3.3096 0.058367 0.031718 0.018674 -0.057924 -0.17094 0.46585 0.029044 -0.0091286 -0.020549 -0.031223 0.11624 0.69148 0.025812 -0.019324 -0.033132 -0.11499 0.56081 -0.02606 1.132 0.46451 0.03633 0.043015 0.52328 -0.0013778 0.024689 -0.0098185 -0.35179 0.063366 0.028622 0.50513 0.020436 0.17845 0.0067268 0.049831 -0.0044312 0.042674 0.011539 0.016146 0.0068044 0.62551 0.072449 0.11976 -0.40241 0.43142 0.053664 0.0087528 -0.010206 0.44596 -0.0066432 0.063509 0.078332 0.074121 0.098706 0.023706 1.0762 1.2396 1.1355 0.037359 0.23295 0.89106 -0.020961 -0.062764 0.022356 0.0038854 -0.0016629 0.071104 0.10862 0.0094307 0 0.52223 0.01447 -0.0018014 0.011121 0.93325 -0.046854 -0.019863 0.13907 -0.0123 -0.028218 -0.037082 0.63226 0.18631 0.043157 0.097804 0.65756 0.018803 -0.068663 0.87883 -0.023977 0.14344 0.66845 0.045126 0.01323 -0.0026322 -0.0022818 0.0027745 -0.027808 -0.37121 0.4406 -0.031714 0.070673 0.062486 0.043157 0.068585 0.11345 0.60124 0.045708 0.12452 0.065226 -0.011198 -0.0085766 -0.015054 0.017404 0 0.053521 0.44223 -0.024388 0.43294 0.056085 0.0049969 0.0048579 0.022999 -0.0078863 -0.017257 0.015447 -0.010922 -0.027398 0.58381 0.037145 0.30521 0.74976 2.084 0.030805 0.0058309 -0.1272 -0.017913 0.37341 0.015028 -0.17194 -0.00055444 0.028903 -0.02562 Amplification Peak 16 - CN values 17q12 chr17:37837542-37876018(probes 1329365:1329404) chr17:37839410-37875908(probes 1329366:1329403) chr17:37175136-38117900(probes 1329082:1329518) 2.7454e-08 1.1145e-07 Actual Copy Change Given 0.039054 0.07997 0.30241 -0.018064 0.034113 -0.033269 0.041317 -0.0042929 -0.012179 -0.20653 0.0072217 -0.33462 0.019363 0.033408 0.42853 3.6569 0.11799 0.0043021 0.72659 0.042973 -0.0055375 0.69634 0.26232 0.069382 0.072396 0.030889 0.30042 -0.20311 -0.026441 0.15711 -0.00027724 -0.011749 -0.016979 0.046705 0.70251 0.040609 0.026514 0.96864 0.67524 0.51333 0.12579 0.041883 0.032845 0.049496 -0.012438 0.035665 -0.06611 0.544 -0.007472 0.08678 0.22993 3.6569 0.054639 0.037453 0.0001419 0.010904 0.098706 0.0040243 -0.17707 3.6569 -0.027808 0.62588 -0.0023553 -0.40744 0.13288 0.069617 1.1244 0.12653 0.012237 -0.081073 0.00081393 0.017824 -0.52379 0.059794 -0.23875 -0.034631 0.05694 0.67724 0.0015433 1.0101 0.029606 -0.76915 0.40894 -0.0022168 0.76772 0 0.57041 0.015866 0.078582 0.033549 0.03031 -0.64443 0.0054139 0.033549 0.036935 3.6569 0.025347 1.2179 -0.013402 -0.46994 0.1685 -0.022058 0.21991 0.013632 0.35332 0.094927 0.00052702 0.037217 0.054518 -0.067458 -0.039563 -0.016704 -0.040359 0.61123 -0.40673 -0.01032 0.0024969 -0.33957 0.014096 0.0020805 0.76523 0.43115 0.26184 0.024689 0.069788 0.047268 -0.08752 -0.54512 0.598 0.039337 -0.69871 -0.37954 -0.015191 -0.0040162 0.089561 3.6569 0.19649 0.068378 -0.11668 -0.027261 0.44579 -0.23997 0.0029133 0.037888 0.0375 0 -0.0023428 0.45241 -0.0049844 0.0091705 0.015308 -0.032793 -0.29213 0.02245 0.41078 -0.090955 3.6569 -0.10289 -0.018875 -0.63288 0.1673 -0.015038 0.3153 0.029547 0.17302 Amplification Peak 17 - CN values 17q24.1 chr17:52638967-71116693(probes 1336024:1347227) chr17:63251945-63390028(probes 1341955:1342053) chr17:63251945-63561795(probes 1341955:1342157) 0.15915 0.19252 Actual Copy Change Given 0.039054 1.5694 0.30241 -0.018064 0.54912 -0.033269 0.041317 -0.0042929 -0.055389 -0.20653 0.0072217 -0.33462 0.019363 0.033408 0.44088 -0.22675 0.11799 0.0043021 0.75375 0.042973 -0.0055375 0.67771 -0.55286 0.07254 0.072396 0.030889 0.31906 -0.20311 -0.026441 0.16325 -0.00027724 1.1433 -0.016979 0.095217 1.6342 0.040609 0.026514 0.96864 1.6477 -0.83072 0.11249 0.02539 0.032845 0.049496 -0.012438 0.051103 -0.02944 -0.061555 -0.007472 0.09615 0.22993 0.029513 0.043965 0.037453 0.0001419 0.010904 0.098706 0.0040243 -0.17827 0.043015 -0.027808 0.027638 -0.0023553 -0.40744 0.13288 0.069617 0.70607 0.11277 0.012237 -0.081073 0.00081393 0.017824 -0.52379 0.059794 -0.23875 -0.067458 0.058509 0.67724 0.0015433 1.0101 0.029606 -0.76915 0.40894 -0.0033924 -0.026441 0 0.57041 0.015866 0.067805 0.033549 0.03031 -0.64443 0.0054139 0.033549 0.036935 0.6727 0.029606 1.2179 -0.013402 -0.46994 0.1685 -0.022058 0.21991 0.0050353 0.0029133 0.094927 -0.35375 0.037217 0.035423 -0.0018014 -0.039563 -0.01106 -0.040359 0.67493 -0.40971 -0.01032 0.0024969 -0.33957 0.014096 0.0020805 0.82608 0.41802 -1.2929 0.023987 0.054921 0.047268 0.4251 -0.54512 0.598 0.039337 1.4908 1.1262 -0.015191 -0.0040162 -0.80881 0.032986 0.19649 0.068378 -0.083465 -0.028293 0.44579 -0.23997 0.0029133 0.037888 0.0375 0 -0.0023428 0.45241 -0.0049844 -0.0044312 0.015308 -0.032793 0.083487 0.02259 0.41078 -0.090955 0.003191 -0.10289 -0.018875 0.033638 0.1673 -0.015038 0.3153 0.029547 0.028763 Amplification Peak 18 - CN values 20q11.21 chr20:26196264-33343047(probes 1433816:1435481) chr20:30680353-31004856(probes 1434206:1434344) chr20:22107162-40360025(probes 1431438:1439559) 1.9519e-21 1.7256e-10 Actual Copy Change Given 1.0638 1.9803 1.1284 0.99366 0.056331 0.47873 0.04812 1.0657 0.55051 1.4981 0.69241 0.71199 1.332 0.47942 2.6848 2.0086 1.7738 2.293 -0.0036011 0.04429 0.60864 1.5623 2.1612 0.841 1.5438 0.51578 2.3244 0.31161 2.2457 1.589 -0.00027724 1.0838 1.1018 0.095363 3.6569 0.89588 0.62855 2.9723 2.2377 0.45292 3.2725 0.57487 0.67602 0.78267 1.1912 0.81708 -0.0048381 1.2369 0.31001 0.093911 2.0083 1.9436 0.56238 0.73296 1.0591 0.0075616 1.2802 0.70907 0.60586 2.9499 0.12712 0.83569 1.2594 1.7702 1.2114 0.46274 2.0108 1.2522 2.0438 -0.0048461 2.337 0.0097276 0.69933 1.249 1.4851 1.0126 0.79297 2.7317 1.2499 3.6569 1.6594 1.5991 3.2927 0.8161 0.72792 1.6574 0.61299 0.0087152 2.8122 2.9892 0.020426 0.66623 2.2729 0.31562 0.29088 0.46024 1.1654 0.8564 0.52993 0.19542 0.6844 0.0036076 1.1412 1.1947 0.93752 0.35757 1.0127 2.2981 2.1922 1.3311 2.211 1.4153 1.7272 3.0757 0.52957 0.49465 2.5102 1.2874 0.51839 0.52976 0.31867 2.3794 0.026233 1.391 1.3926 3.2806 2.3604 0.72395 1.9228 1.9055 0.89917 1.1512 0.87727 0.0065262 0.62843 0.82196 0.73057 1.7477 2.4639 1.3856 2.2717 0.669 0.017404 1.664 0.38072 1.6894 -0.012003 1.3573 0.017404 0.85838 1.0962 1.74 0.94574 1.1714 1.8235 0.98815 0.99053 0.18662 0.45857 1.4775 1.72 0.86277 0.72017 1.6351 0.47976 Amplification Peak 19 - CN values 20q11.23 chr20:35722356-40357006(probes 1436613:1439542) chr20:36468414-36472178(probes 1437043:1437049) chr20:22107162-40360025(probes 1431438:1439559) 7.719e-21 2.0513e-11 Actual Copy Change Given 1.0638 1.1309 1.1284 0.99366 0.056331 0.47873 0.04812 1.0657 1.7795 1.4874 0.69241 0.71199 1.332 0.47942 2.4981 1.7329 1.1941 2.2963 -0.0036011 0.04429 0.60864 1.5431 1.6239 0.841 1.5101 0.51578 0.80131 0.31161 2.2809 2.0206 -0.00027724 1.0838 1.1018 0.095363 3.6569 0.89588 0.74442 2.7773 3.6569 0.45292 3.2725 0.74918 1.2748 1.7009 1.1912 0.81708 -0.0048381 1.9218 0.31001 0.093911 2.0083 1.2167 0.56238 0.73296 1.0591 0.0075616 1.2802 0.70907 0.75673 2.0739 0.12712 0.83569 1.2594 0.74601 1.5754 0.46274 2.0108 1.2522 2.6364 -0.0048461 2.337 0.0097276 0.69933 1.2353 1.4723 1.0126 0.79297 2.7317 1.2499 3.6569 1.6594 1.5991 3.2927 0.8161 0.72792 1.7123 0.61299 0.0087152 2.8122 2.9892 0.020426 0.66623 2.2729 0.31562 0.29088 0.46024 1.1654 0.8564 0.52993 0.19542 0.6844 0.45207 1.1412 1.1947 1.6951 0.35757 1.0127 2.2981 2.2064 1.3311 2.9529 1.362 1.6997 3.0757 0.52957 1.2502 1.5274 1.2509 0.53239 0.52976 0.31867 2.3794 0.026233 1.391 1.3926 3.1834 0.84227 0.72395 2.048 1.9055 0.89917 1.1512 0.87727 0.0065262 0.62843 0.82196 0.73057 1.7459 2.4648 1.3856 2.2717 0.669 0.017404 1.664 0.3628 1.6894 -0.012003 1.3452 0.017404 0.85838 1.0962 1.74 0.94574 1.1714 1.8235 0.98815 0.98162 0.18662 0.45857 1.4775 1.925 0.86277 0.72017 1.6351 0.47976 Amplification Peak 20 - CN values 20q13.33 chr20:60123501-63025520(probes 1453247:1454119) chr20:62142486-63025520(probes 1454098:1454119) chr20:60126028-63025520(probes 1453248:1454119) 0.033971 0.10286 Actual Copy Change Given 1.0638 1.186 1.1284 0.99366 0.17287 0.47873 0.04812 1.3355 0.80031 1.4874 0.69241 0.71199 1.332 0.47942 2.5938 1.9964 1.3875 2.3127 -0.0036011 0.04429 0.60864 1.5504 1.3835 0.90492 1.5101 0.49201 0.84179 0.37325 2.3289 1.0908 -0.00027724 1.0838 1.0825 0.095363 3.6569 0.89588 0.74442 2.8689 3.6569 0.45292 2.8474 0.74918 1.3079 0.77612 1.1681 0.81708 -0.0048381 1.2085 0.31001 0.092231 2.0623 1.0333 0.56238 0.88592 0.50707 0.0075616 1.3182 0.70907 0.75692 1.3334 0.12712 0.83569 1.2594 -0.42905 1.5754 0.46274 2.0719 1.2194 2.0708 -0.0048461 2.3857 0.0097276 0.68541 1.2353 1.4723 0.96391 0.7984 2.8 1.2499 3.6569 1.6594 1.5639 2.3754 0.8161 0.74594 1.81 0.61299 0.0087152 2.899 2.5881 0.020426 0.63737 2.3641 0.31562 0.29088 0.46024 1.2203 0.8564 0.52993 0.19542 0.6844 0.45207 1.1654 1.1947 1.6314 1.2668 1.2959 2.9871 2.2064 1.3366 3.0148 1.4101 1.6997 2.6722 0.99964 0.57404 1.546 1.3071 2.5366 0.52976 0.31867 2.5063 0.026233 1.4376 1.4269 2.1465 0.89035 0.68477 0.033408 0.90406 0.89917 1.2078 0.86017 0.0013868 0.62843 0.8247 0.73057 1.8047 2.4695 1.3856 2.2365 0.669 -0.013945 1.7332 0.3628 1.6808 -0.012003 1.3943 0.017404 0.85838 1.0985 1.8311 1.0572 1.1714 1.8416 0.98815 0.98162 0.26388 0.45857 1.5056 1.6286 0.86277 0.72962 1.6688 0.47976 Amplification Peak 21 - CN values Xp22.2 chrX:1-28634031(probes 1491263:1502306) chrX:13470941-14892611(probes 1494866:1495786) chrX:13470941-14895431(probes 1494866:1495789) 0.13718 0.13718 Actual Copy Change Given -0.0060904 0.081557 0.067153 -0.0064907 -0.601 -0.41794 -0.0060904 -0.0083005 0.15694 -0.062152 0.1136 -0.0069852 0.15114 0.0070826 0.10789 -0.01849 -0.083569 0.11008 -0.26637 -0.22989 0.028763 -0.018135 -0.016978 -0.068663 -0.3579 0.050262 -0.011198 0.61897 0.1994 -0.19237 -0.57081 0.017886 0.023566 -0.10985 0.12049 -0.13368 0.049646 0.066945 1.3412 -0.062092 0.28121 0.03264 -0.057116 -0.063208 -0.034359 0 -0.72198 -0.029857 0.044007 -0.52849 -0.0023553 0.02507 -0.071759 0.031557 -0.011883 0.0038079 -0.35726 0.04259 0.010785 -0.042245 -0.030677 0.049256 -0.076805 0.12658 0.021463 -0.0032034 -0.16128 0.021884 -0.10867 0.7087 0.17106 0.060079 -0.23104 -0.028765 -0.10447 0.013213 -0.024114 0.31201 0.3643 0.33626 0.046559 -0.078155 1.2041 -0.0083005 2.0671 -0.063301 0.057796 0.024689 -0.061152 0.042363 0.11389 -0.51434 1.2505 -0.10985 0.015447 0 0.14771 0.11213 0.0095883 -0.14349 0.050108 -0.092874 -0.0059522 0.029184 -0.30294 0.0094491 -0.038061 0.087245 0.074408 2.3038 0.014435 -0.010784 0.066624 0.21729 -0.13446 -0.15562 0.035665 -0.054773 -0.11848 -0.0037395 -0.046631 -0.013073 1.0369 -0.039258 0.099263 -0.35772 -0.20181 0.053094 -0.069393 0.56045 -0.011973 -0.0032342 -0.0042929 0.042024 -0.075345 -0.06424 0.34047 0.050392 0.11462 -0.055364 0.09246 -0.071739 0.05281 0.012376 0.048688 0.13362 0.02304 1.051 -0.03681 0.028269 -0.18131 -0.13138 0 -0.1255 0.034536 -0.017733 -0.026988 0.026514 0.028791 0.125 0.05071 0.079012 0.27869 0.07988 0.051103 Amplification Peak 22 - CN values Xq27.3 chrX:131802289-155270560(probes 1543818:1553777) chrX:142743660-142769043(probes 1548468:1548490) chrX:142644027-142769585(probes 1548403:1548493) 0.14805 0.14805 Actual Copy Change Given -0.11365 0.045939 -0.0056129 -0.041553 0.12697 0.39181 0 -0.030131 0.154 -0.09839 0.1136 -0.0069852 0.097106 0.0070826 0.10789 -0.01849 -0.10276 0.078871 1.2319 -0.24375 -0.025296 -0.056173 -0.078377 -0.085313 0.64543 0.016856 0.69652 -0.2102 0.095653 -0.097891 0.51769 0.017886 0.0077774 -0.12668 0.10789 -0.13368 0.040326 0.059937 0.23236 -0.062092 0.2016 0.046133 0.46666 -0.082626 -0.023155 -0.035986 -0.11508 -0.029857 0.034395 0.21315 -0.0023553 -0.03395 0.37345 -0.0021246 -0.045705 -0.00071511 0.30889 0.04259 0 0.039902 -0.030677 0.02539 -0.068931 3.6569 0.0027877 -0.0068313 1.1414 -0.0092666 -0.10867 -0.39107 0.17106 -0.07401 -0.25189 -0.037781 -0.068127 -0.13316 -0.092413 0.25534 0.35057 0.33626 0.046559 -0.10208 -0.263 -0.16459 -0.32413 -0.063301 0.057796 0.024689 -0.061152 0.0039418 0.05281 1.0559 0.12152 -0.10985 0.015447 0 0.14771 0.070386 -0.015329 -0.11692 0.041741 -0.092874 -0.0059522 0.015866 0.32576 0.0094491 -0.098972 0.25308 0.023315 0.1252 -0.055474 -0.010784 0.04812 0.21606 -0.13446 0.20173 0.0066259 -0.087934 -0.11848 -0.0037395 -0.038306 -0.0063865 -0.194 -0.039258 0.057344 0.22345 0.16362 0.044999 -0.090626 -0.20112 -0.011973 -0.0032342 -0.0042929 0.025054 -0.085324 -0.10494 -0.62469 -0.81933 0.070469 -0.051991 0.09827 -0.12447 0.031859 0.012376 0.048688 0.13362 0 -0.27344 -0.041024 0.23597 0.34275 -0.014161 0 0.15234 0.040185 -0.017733 -0.03817 -0.075345 0.028791 0.125 0.0375 0.079463 -0.058596 0.07988 0.051103 Deletion Peak 1 - CN values 1p36.11 chr1:3814904-31841618(probes 308:14917) chr1:27689911-27704889(probes 12868:12870) chr1:1-34557128(probes 1:16321) 2.1758e-10 5.3562e-10 Actual Copy Change Given -0.258 -0.0066944 -0.33601 -0.32134 -0.54209 -0.65351 0.0086135 -0.0091007 -0.58668 -0.60049 0.0098669 -0.30702 -0.0015243 0.015028 -0.45147 -0.21169 -0.32751 -0.0023293 0.0016642 -0.39018 -0.01907 0.01433 -0.2167 -0.75702 -0.67002 0.018255 -0.14284 0.25887 -0.01312 -0.51517 -0.014503 -0.010508 -0.036129 -0.64368 -0.75426 0.018663 0.044148 -0.0077482 -0.16501 0.10045 -0.0018014 0.023426 0.02806 -0.79505 -0.31167 -0.15362 -0.0098105 0.020903 -0.0031859 -0.33156 -0.32797 -0.36793 0.0030315 -0.76384 -0.39062 0.0072833 -0.013791 -0.011005 -0.16401 -0.29113 -0.39141 0.010424 -0.32075 -0.42075 -0.17778 0.084735 -0.022715 -0.020549 -0.47236 -0.0083005 0.026795 0.0094491 -1.0849 0.0013837 -0.2396 -0.70603 0.024268 0.003533 0.0058488 0.01493 0.0084743 -0.25243 -0.063838 -0.44534 -0.89028 -0.034468 -0.61489 0.0048579 -0.59244 -0.54288 0.034395 -0.00041585 -0.55176 -0.33537 -0.0030475 -0.45705 -0.0047079 -0.0073339 -0.00055444 -0.46142 0.049824 -0.050321 -0.37561 -0.65482 0.027919 -0.16752 -0.0088801 0.058795 0.021183 -0.065775 -0.61073 0.00083195 -0.31033 -0.76064 -0.10001 -0.32909 -0.2497 0.059299 -0.57224 -0.56157 0 -0.419 -0.039029 -1.2929 0.047812 0.029044 -0.58564 0.65792 0.021603 -0.81466 -0.14909 -0.37144 -0.2429 0.0016642 0.019376 -0.049289 -0.012989 -0.6068 -0.024798 -0.042788 -0.046121 0.085365 0.0049969 0.024127 0.11155 -0.013953 -0.0048461 -0.5243 -0.47828 0.0079175 0.048197 0.014677 -0.12927 -0.063516 -0.43789 0.077072 -0.58814 0.0015255 -0.013099 -0.0072397 -0.5851 0.026529 -0.019363 -0.62513 -0.53774 Deletion Peak 2 - CN values 1p33 chr1:49615826-50514967(probes 24529:24822) chr1:48998362-50492467(probes 24071:24816) chr1:49442393-49450203(probes 24444:24445) 4.171e-05 0.00068561 Actual Copy Change Given -0.258 -0.0066944 -0.33601 0.015462 -0.5358 0.0037465 0.0086135 -0.0091007 -0.0090674 -0.25315 0.0098669 -0.30702 -0.0015243 0.015028 -0.45147 -0.21169 -0.32751 -0.0023293 0.0016642 -0.39018 -0.01907 0.01433 -0.11822 0.02539 -0.72138 0.0057033 0.96761 0.22715 -0.01312 -0.51517 -0.014503 -0.010508 0.010424 0.096971 -0.0076101 0.018663 0.044148 -0.0077482 -0.06282 0.10045 -0.0018014 0.023426 0.02806 0.039011 -0.31167 -0.16853 -0.0098105 0.020903 -0.0031859 -0.33156 -0.32797 0.04259 0.0030315 0.038865 -0.078851 0.0072833 -0.013791 0.002841 -0.16401 -0.29113 0.04259 0.010424 -0.32075 -0.42075 -0.17778 0.063824 -0.022715 -0.020549 -0.46217 0.011261 -0.0085766 0.0094491 0.05523 0.0013837 -0.2396 -0.70603 0.024268 0.003533 0.0058488 0.01493 0.0084743 -0.25243 -0.018216 -0.44534 -0.010461 -0.034468 0.00013863 0.0048579 -0.59244 -0.54288 0.034395 -0.00041585 -0.55176 -0.33537 -0.0030475 -0.45076 -0.0047079 -0.0073339 -0.00055444 -0.46142 0.049824 -0.010219 -0.37561 0.008892 -0.37595 -0.16752 -0.49279 0.028286 -0.06299 -0.89534 -0.57027 0.00083195 -0.31033 -0.0059522 -0.10001 0.20723 -0.2497 0.059299 -0.55836 0.026373 0 0.032617 -0.039029 -0.31564 0.047812 0.029044 -0.56411 0.65792 0.021603 0.053948 -0.14909 0.025531 -0.2429 0.0016642 -0.00069303 -0.049289 -0.012989 -0.6068 -0.024798 0.011591 -0.046121 0.018803 0.0049969 0.024127 0.11155 -0.3923 -0.0048461 -0.5243 0.41295 -0.0083005 0.018943 0.014677 -0.12927 -0.063516 -0.42429 0.077072 -0.58814 0.020763 -0.013099 -0.0072397 0 0.026529 -0.0014659 -0.65756 0.7181 Deletion Peak 3 - CN values 1p13.2 chr1:104063143-119802060(probes 57915:67050) chr1:114629216-114701092(probes 63820:63876) chr1:111787873-115448338(probes 62036:64317) 0.013822 0.027723 Actual Copy Change Given -0.25757 -0.012551 -0.30045 0.015462 -0.52583 0.015253 0.049398 0.0084743 -0.0090674 -0.2575 0.00027728 -0.24356 -0.0015243 -0.0063668 0.0063976 -0.21895 -0.32751 -0.0079769 0.0016642 -0.39018 0.0047725 0.01433 -0.11822 0.015168 -0.72623 0.0018143 0.43614 0.67604 -0.010784 -0.51517 -0.67619 -0.010508 0.010424 0.085221 0.7783 0.0085664 0.044148 -0.0077482 -0.069776 0.15024 -0.016543 0.041317 0.0037465 0.016941 -0.31167 -0.16396 0.017895 0.020903 -0.0031859 -0.84979 -0.31972 0.015509 0.0030315 0.0074535 -0.040613 0.0072833 0.0065262 0.031436 -0.19037 0.051103 0.04259 0.010424 -0.30028 -0.42075 -0.17778 0.022986 -0.0073339 -0.040116 -0.43442 -0.65258 0.0015255 0.0094491 0.011053 0.015168 -0.23594 -0.69486 0.0094491 0.003533 0.0014046 0.01818 0.0084743 -0.33005 -0.018216 -0.44534 0.01447 -0.027651 0.00013863 0.0048579 -0.59528 3.6569 0.0049969 0.022024 -0.55176 -0.33918 -0.0030475 -0.45492 -0.0047079 -0.0073339 -0.00055444 -0.4676 0.053948 0.017404 0.20198 0.0062481 -0.37595 0.24124 0.038602 -0.01408 -0.06299 -0.028218 -0.55382 0.00083195 -0.21057 -0.0059522 -0.11823 0.20723 -0.2497 0.055759 -0.55327 0.026373 -0.069992 0 -0.039029 -0.31564 -0.69939 0.0282 -0.24442 0.5649 0.015866 -0.0012473 -0.14909 0.0099427 -0.22974 0.0016642 -0.0012473 -0.79978 -0.012989 -0.60593 0.0028616 0.013911 -0.036265 0.031155 0.015971 -0.6655 0.11155 -0.3923 0.0037465 -0.5243 0 -0.04428 0.018943 0.014677 -0.12927 -0.063516 -0.42429 -0.45929 -0.57219 0.030169 -0.013099 -0.13359 -0.0014476 -0.17675 -0.0014659 -0.67037 0.35489 Deletion Peak 4 - CN values 2p12 chr2:56408180-96881977(probes 161312:179101) chr2:76974256-77826128(probes 173134:173631) chr2:77412860-77415393(probes 173383:173384) 0.19022 0.1927 Actual Copy Change Given 0.23163 0.41808 0.26584 0.0055672 0.0035397 -0.0080244 0.045282 0.026373 -0.010071 0.004935 0.56792 -0.32907 -0.015483 -0.014582 0.38267 0.11814 0.013353 0.77984 -0.0046365 -0.42342 0.0037465 5.5309e-05 -0.49494 0.0063618 -0.0013858 -0.019974 0.12064 0.19552 -0.025884 0.12653 -0.021048 0.011261 -0.014641 -0.63216 -0.053071 -0.025072 -0.035644 -0.021921 -0.68454 -0.22426 -0.049313 -0.014228 0.0046845 0.0012379 0.013213 0.039902 0.024276 0.00458 -0.0027766 -0.33987 0.04188 -0.0084385 0.039881 -0.0030937 0.082913 0.0029747 -0.00013862 -0.0040162 -0.21223 -0.0022168 0.03214 -0.01635 -0.0041546 -0.4007 0.66272 -0.0048961 0.38551 -0.00013862 0.0064829 -0.0026322 0.20886 -0.0037225 0 -0.0048461 -0.24642 -0.041179 -0.023018 0.031275 -0.0028913 -0.0056757 -0.010094 0.082116 0.3827 -0.020373 0.0073259 0.037076 -0.0047079 -0.0076101 0.025531 0.057368 -0.0048461 -0.63074 0.31617 0.0037465 0 -0.040073 -0.0019399 0.4186 0.0030522 0.15113 0 0.012934 0.13391 0 0 0.062573 0.0016367 0.59501 0.3117 0.70382 -0.016326 0.0086135 0.29334 0.59314 0.018651 -0.77894 0.24544 0.035881 -0.0070576 -0.019314 0.14502 0.018577 0.032362 0.017796 0 -0.021094 0.32438 0.047836 -0.017529 -0.0080633 0.025386 0.34567 0.42855 0.0013868 -0.0085766 0.0029133 -0.00046185 -0.0088526 -0.0053992 -0.01106 0.32766 0 -0.0047079 -0.0089906 -0.0066432 0.26923 0.008892 -0.018353 0.017404 0.27458 0.49372 -0.24843 0.031681 0.0034741 0 0.068165 -0.0081624 0.05281 0.007667 0.53355 0.20809 0.2787 0.0058309 0.50116 0 Deletion Peak 5 - CN values 3p14.2 chr3:59702822-61026498(probes 292643:292644) chr3:59702822-61238217(probes 292643:292841) chr3:59705136-61307437(probes 292644:292892) 5.2516e-09 5.103e-09 Actual Copy Change Given -0.060819 0.016513 0.049556 -0.42111 -0.014365 -0.63074 -0.13673 0.015168 0 -0.27577 -0.0021451 0.032919 0.35169 0.41764 -0.35556 0 -0.71595 0.0044411 0.0078088 0.0093008 -0.48092 -0.67976 0.014191 -0.36136 -0.74054 0.025121 -0.074678 0.24513 -0.51424 0.13732 -0.0026809 1.1436 0 0.035947 0.031577 0.0081245 0.071535 0.010006 -0.042685 0.33901 0.14701 0.34307 -0.00096161 0.0046762 -0.044686 -0.15758 -0.62493 -0.024251 0.0023581 -0.35601 -0.63831 0 -0.57986 0.0080102 -0.061148 0.0011707 -0.04428 0.0021277 0.28236 0.017963 -0.0098185 -0.0042929 0.021463 -0.01844 0.18404 0.52829 -0.45286 -0.58559 0.037217 0.026654 -0.013953 -0.0026409 0.056505 -0.97174 0.042874 0.11462 -0.0012473 -0.017877 -0.0049667 0.14028 0 0.20114 -0.02562 0.026654 0.012516 0.12329 0 -0.00097017 0.029397 -1.1368 -0.014228 0.022725 -0.032041 -0.35133 0.0033299 0.012516 -0.031067 0.012433 0.011818 -0.46398 -0.16345 0.026795 1.1005 0.0069435 -0.14592 0.089091 0.026913 0.006109 0.066328 0.54665 0.0049609 -0.53388 0.29704 0.0091705 0.033419 0.53281 0 -0.3647 0.011329 0.14424 -0.84787 0.028958 -0.34767 0.03214 0.013608 0.0028748 0.43032 -0.083706 0.00083195 -0.0095392 0.0298 0.44088 0.0098669 0.0015255 -0.72818 0.019923 0.71453 -0.011887 0.059937 0.062508 -0.062226 0.041268 -0.0030475 -0.00097017 -0.0097305 0.05025 0.0069435 0.017824 0.0070826 -0.038986 -0.0023553 0.05022 0.1661 -0.14785 0.26738 0.085584 0.014051 -0.088772 0.0066931 -0.01436 -0.0044312 -0.16241 -0.010094 -0.005261 -0.048072 Deletion Peak 6 - CN values 3q26.31 chr3:174345545-175760559(probes 353580:354110) chr3:174148679-175760559(probes 353489:354110) chr3:174572180-174707049(probes 353732:353810) 1.4567e-09 1.4567e-09 Actual Copy Change Given -0.060819 0.0071055 0.031106 0.01658 0.0097028 0.028622 -0.11404 0.53085 0.9477 -0.26618 0.0035877 0.032919 0.54735 0.41613 0.0033299 0 0.010601 -0.0034627 0.0090736 -0.43214 0.01295 -0.0018014 0.020203 -0.37256 0.063223 -0.0088413 -0.079609 0.23789 0.12815 0.077142 0.0095883 0.0026357 -0.0083005 0.28887 -0.0027707 0.014051 0.071535 0.010006 -0.036036 0.46348 1.0616 0.32316 -0.027671 -0.0095082 -0.044686 -0.13173 -0.087969 -0.014228 0.0023581 0.09275 0.013074 0.0095883 0.43072 0.0080102 -0.044412 0.0011707 0.072253 0.00027728 0.27735 0.047978 -0.014503 -0.00097017 0.021463 0.40167 -0.5431 -0.58219 -0.4846 0.0089552 0.05025 0.029592 -0.013953 0.020203 0.052162 0.025531 0.042874 0.0282 -0.01106 -0.72177 -0.0049667 0.14028 0 0.21001 -0.02562 0.033977 0.029184 0.12333 0 0.010842 0.029397 -0.67453 -0.014228 0.022725 -0.032041 0.023706 0.0033299 -0.0031859 -0.022195 0.012516 0.011818 -0.083605 -0.16532 0.026795 -0.031086 0.0069435 0.1936 0 0.472 0.97482 0.039195 0.55708 0.029009 0.0080567 0.29704 0.0033299 0.0029018 0.48971 0 -0.007813 0.027216 0.14424 -1.0551 0.028958 -0.34767 0.054803 1.1501 0.0081959 0.045771 -0.085324 0.0054139 -0.039122 -8.6513e-05 0.4241 0.013492 -0.58068 -0.72967 0.0012481 0.70621 -0.014054 0.020104 0.028857 0.44308 0.021323 -0.62808 -0.025423 0.021043 0.21729 0.0069435 -0.51445 -0.012851 -0.033269 0.00013863 0.071174 0.17694 0.26295 0.28564 0.085439 0.014051 -0.068395 0.0066931 0.61836 -0.014778 -0.16241 -0.00097017 -0.005261 -0.048072 Deletion Peak 7 - CN values 4p13 chr4:31148303-52714468(probes 384079:393384) chr4:42890649-43326199(probes 391010:391014) chr4:42895716-43326199(probes 391013:391014) 0.14076 0.14469 Actual Copy Change Given -0.28786 -0.011524 -0.2929 -0.19062 0.029888 -0.019177 -0.16154 -0.53845 -0.091436 -0.31347 -0.0026806 -0.36232 -0.022058 -0.49902 0.0086135 -0.21837 -0.035448 0 -0.00058923 0 -0.0011087 -0.0029716 -0.56286 -0.0049844 0 -0.0060791 -0.087889 1.6311 -0.22638 -0.40272 -0.011347 0.0083351 -0.0036011 0.83373 0.74366 0.0086135 -0.005814 0.032704 -0.018671 -0.51855 -0.84468 -0.56892 0.0013868 -0.022786 -0.35442 -0.20709 -0.62531 -0.012162 0 -0.36578 -0.017218 -0.40882 -1.1413 0 -0.43626 -0.00090889 -0.64546 -0.0008316 -0.22298 -0.27129 -0.054825 -0.50515 -0.31307 -0.44444 -0.20087 -0.44979 -0.014916 0.033408 -0.48462 0.031859 0.15711 -0.0055958 -0.53236 -0.055364 -0.62988 -0.75297 -0.00041585 -0.019734 -0.0095249 -0.0016629 -0.01354 -0.38324 -0.014641 -0.44652 -0.0049844 -0.014778 -0.0013858 -0.0123 -0.044255 -0.55884 -0.005261 -0.61691 -0.078943 0.0022193 -0.0039967 -0.45436 -0.034359 -0.015996 0.012097 -0.48208 -0.2097 -0.5201 0.11653 -0.0023553 -0.076412 0.14429 -0.016017 -0.010094 -0.0055375 -0.044551 0.55297 0.0087528 -0.25685 -0.0089906 0.00068915 -0.36778 -0.19637 -0.35948 -0.55647 -0.0033243 0.14667 -0.089241 -0.014916 -0.19475 -0.023315 -0.034495 -0.54659 -0.056072 0.40339 -0.86263 -0.030362 -0.41245 0.0041632 -0.0034259 0.0095883 0.0081959 0.62115 -0.11857 -0.014434 -0.82154 -0.085855 -0.30428 -0.0029091 -0.018628 -0.015879 -0.012989 -0.012713 -0.24375 0.0022193 -0.041295 -0.010646 -0.53566 -0.3642 -0.22305 -0.052396 0 -0.58535 -0.091386 -0.020714 -0.030318 -0.0063294 -0.046703 -0.01106 -0.020687 -0.10434 Deletion Peak 8 - CN values 4q22.1 chr4:91271445-93240505(probes 415206:416141) chr4:91035787-92525194(probes 415043:415828) chr4:91241678-92365315(probes 415175:415795) 1.3622e-22 3.6358e-22 Actual Copy Change Given -0.28786 0.0084226 -0.2929 -0.18746 -0.53631 -0.60061 -0.16154 -1.0689 -0.099967 -0.31347 0 -0.35464 -0.022058 -0.029852 0.020763 -0.21565 -0.043873 0 0.019923 0 0.026233 -0.0029716 -0.5425 -0.0049844 -0.020311 -0.023554 -0.087889 -0.0031496 -0.25817 -0.36533 0.016845 0.0083351 0.019783 -0.56773 -0.65929 0.0086135 -0.005814 0.032704 -0.018671 -0.51855 -0.8177 -0.56892 -0.032041 -0.022786 -0.58451 -0.056846 -0.56911 -0.012162 0 -0.36578 -0.0034627 -0.39597 -0.11397 0 -0.077208 -0.00090889 0.33448 -0.0008316 -0.22958 -0.27129 -0.054825 0.28406 -0.97281 -0.44444 -0.49767 -0.45569 -0.90411 -0.28774 -0.48462 0.031859 0 0.023847 -0.53236 -1.0282 -0.60767 -0.74621 -0.012162 -0.019734 -0.0095249 -0.0016629 -0.01354 -0.38324 -0.014641 -0.41762 -0.78555 -0.014778 -0.0013858 -0.0123 -0.6096 -0.050635 -0.005261 -0.61691 -0.078943 -0.768 -0.0039967 -0.45436 -0.034359 0.0051359 0.012097 -0.46919 -0.2097 -0.5201 -0.37471 -0.0023553 -0.076412 -0.2128 0.008029 -0.026304 -0.0055375 -0.049965 -0.51177 0.0087528 -0.25685 -0.0089906 0.00068915 -0.36619 -0.19637 -0.35948 -0.52328 -0.0033243 -0.59721 -0.084476 -0.014916 -0.19475 -0.046741 -0.045301 -0.50438 -0.056072 0.40339 -0.016017 -0.054505 -0.41245 0.0041632 -0.0034259 -0.77082 -0.82195 -0.059942 -0.10933 0.0095794 -0.82154 -0.085855 -0.30428 -0.0023553 -0.028834 -0.015879 -0.012989 -0.012713 -0.28924 -0.44135 -0.041295 -0.010646 -0.53566 -0.3642 -0.22305 -0.42778 -0.44752 -0.58535 -0.087977 -0.020714 -0.021012 -0.0063294 -0.5844 -0.01106 -0.035667 -0.10434 Deletion Peak 9 - CN values 4q35.1 chr4:178100730-191154276(probes 462483:467519) chr4:185307011-185399897(probes 465833:465920) chr4:178201258-191154276(probes 462559:467519) 4.2375e-05 0.0049957 Actual Copy Change Given -0.6836 -0.020326 -0.2929 -0.18746 -0.55221 -0.60061 -0.16154 -0.51726 -0.11065 -0.31347 -0.0030475 -0.35424 -0.022058 -0.022744 0.020763 -0.21824 -0.079476 -0.0033566 0.010424 0 0.018383 -0.021416 -0.55015 -0.023383 -0.013402 -0.03993 -1.1964 0 -0.26134 -0.4216 0.0066653 -0.0008316 0.019783 -1.2041 -0.65929 0.03863 -0.018078 0.032704 -0.0062722 -0.85886 -0.8563 -0.56892 -0.025483 -0.049736 -0.33283 0.39894 -0.5655 -0.68979 0 -0.36578 -0.012576 -0.40127 -0.13416 -0.017849 0.17477 6.1314e-05 0.39114 -0.00096624 0.26649 -0.27519 -0.054825 0.49632 -0.30827 -0.44444 -0.19367 -0.47291 0.0011093 0.023566 -0.48365 -0.81005 -0.065045 -0.010646 -0.53744 -0.047531 -0.60767 -0.10985 0.67511 -0.038243 -0.0095249 -0.0011087 -0.01354 -0.38324 -0.014641 -0.42898 -0.78555 -0.0084385 -0.012851 -0.0123 -0.024935 -0.049559 -0.0076101 -0.64368 -0.090175 -0.14952 -0.0016629 -0.45436 -0.034359 -0.044551 0.012097 -0.46919 -0.2097 -0.5201 -0.37471 0.0081447 -0.076412 -0.21305 0.058338 -0.026304 -0.0055375 -0.055095 -0.52888 0.0087528 -0.25685 -0.016251 -0.024262 -0.36619 -0.19637 -0.35948 -0.5445 0.0023581 0.12476 -0.08713 -0.020275 -0.19475 -0.070291 -0.053867 -0.54093 -0.59507 0.40339 -0.016017 -0.014864 -0.9177 -0.00013862 -0.0036011 0.0091705 -0.82195 -0.059942 -0.1143 -0.0030043 -0.80526 -0.085855 -0.32856 0 -0.028834 -0.030447 -0.012989 -0.015191 -0.81983 -0.0073339 -0.13884 -0.010646 -0.53566 -0.3642 -0.49704 -0.43983 -0.4844 -0.0073869 -0.51805 -0.017286 -0.057839 -0.27918 -0.11863 -0.018443 -0.035667 -0.10888 Deletion Peak 10 - CN values 5q12.1 chr5:58998410-59780946(probes 498999:499385) chr5:58260298-59818245(probes 498454:499410) chr5:58614931-61011058(probes 498697:500055) 1.8791e-10 4.1152e-10 Actual Copy Change Given -0.4342 -0.026664 -0.29017 -0.19023 0.0070018 0.0076392 0.023145 -0.52317 -0.11258 0 -0.0062286 -0.23331 0.26435 -0.47997 -0.45838 0.16926 0.0037465 -0.012438 0 0.012655 -0.0063604 -0.011306 -0.059538 -0.011611 -0.0049844 -0.012151 -0.0070576 -0.25164 -0.016292 0.0558 -0.00097017 0.010842 -0.0020784 0.094346 -0.018902 0 -0.038986 0.015028 0.78974 -0.52656 -0.012713 -0.21726 -0.013149 -0.010219 -0.38358 -0.18156 -0.62581 0.0019418 0.00013863 -0.39708 -0.43575 -0.03387 0.80354 -0.011657 -0.44286 -0.0050616 -0.033269 0.0034866 -0.22064 -0.55707 0.031577 -0.016292 0.0046865 -0.4586 -0.18949 -0.031545 -0.0042929 -0.32612 -0.51362 -0.68888 -0.04048 0 0.041317 0.011818 0.10658 -0.18181 -0.0080244 -0.046385 0.064815 -0.026851 -0.015466 0.12867 0.42536 -0.43604 -0.80823 -0.0123 -0.0078863 -0.0059522 -0.62427 -0.57437 -0.015329 -0.62226 0.93477 -0.0008316 -0.0054747 0.13332 0.36182 -0.010564 0.00458 -0.46951 -0.027808 -0.25646 0.044007 -0.0027707 -0.030404 -0.036538 0.00080437 -0.026988 -0.69532 -0.054286 -0.01261 0 -0.30721 -0.017941 -0.45544 -0.37301 -0.22932 -0.36855 0.00027728 -0.016704 -0.46334 0.101 -0.018078 -0.33191 -0.033347 -0.77626 -0.98868 -0.042245 -0.58941 -0.025804 -0.03079 -0.0094046 -0.233 0.016425 0.023987 -0.011749 0.016146 -0.039529 -0.0023553 0.013213 0.35479 -0.12056 -0.0029091 0.36461 -0.0088526 -0.40827 0.0013868 -1.0721 -0.45233 0.15009 -0.60671 0.041669 -0.38981 -0.05913 -0.45875 -0.042583 -0.0024159 -0.056173 2.7677e-05 -0.023891 -0.023442 -0.10695 -0.0088526 -0.021647 -0.57328 Deletion Peak 11 - CN values 5q22.2 chr5:102895125-114460579(probes 521205:528092) chr5:112039093-112191641(probes 526455:526672) chr5:103029307-125018569(probes 521275:534225) 3.6426e-06 0.00046465 Actual Copy Change Given -0.85551 -0.0057834 -0.3111 -0.19023 0.038206 0.012516 0.023145 -0.52317 -0.14715 0 -0.014127 -0.23331 0.26435 -0.48483 -0.45832 -0.19787 -0.0022168 -0.012438 0 -0.88209 0.00458 -0.011306 -0.074356 -0.011611 -0.0047079 -0.035153 0 -0.77456 -0.039723 0.027076 -0.00097017 0.010842 -0.0020784 0.094346 -0.70221 0 -0.078653 0.015028 0.77991 -0.52266 -0.87749 -0.21726 -0.03987 -0.038756 -0.38358 -0.16879 -0.6038 0.0019418 0.00013863 -0.3828 -0.43398 -0.03387 0.80354 -0.011657 -0.44867 -0.0050616 -0.033269 -0.002867 -0.22064 -0.27643 0.030796 -0.019934 0.0046865 -0.4586 -0.18949 -0.035396 0.41082 -0.33144 -0.51079 -0.74037 -0.04048 -0.0049684 0.041317 -0.15822 0.10658 -0.19825 -0.0080244 -0.02583 0.064815 -0.026851 -0.017251 -0.81938 0.42536 -0.43604 -0.80823 -0.01409 -0.0078863 -0.0059522 -0.62371 -0.58001 -0.015329 -0.63186 0.93477 0.36608 0.00027728 0.14465 0.36182 -0.010564 -0.59556 -0.47184 -0.014641 -0.24715 0.044007 -0.0027707 -0.030404 -0.036538 -0.00025742 -0.026988 -0.70154 -0.082568 -0.039787 0 -0.30721 -0.040073 -0.46179 -0.36574 -0.25657 -0.36855 0.00027728 -0.016704 -0.15503 0.11146 -0.018078 -0.33191 -0.73048 -0.77626 0 -0.052801 -0.60468 -0.025804 -0.02721 -0.052126 -0.233 -0.58274 0.013213 -0.011749 -0.84227 -0.039529 -0.0023553 -0.82994 0.35479 -0.12056 -0.0029091 0.36461 -0.0084385 -0.045228 0.0013868 0.50238 0.40194 -0.29863 -0.014228 0.041669 -0.39221 -0.052796 0.36936 -0.042583 0.0012481 -0.095516 2.7677e-05 -0.058916 -0.617 -0.10695 -0.0088526 -0.021647 0.070034 Deletion Peak 12 - CN values 6p25.3 chr6:1608837-2624052(probes 568068:568761) chr6:1621405-2252425(probes 568071:568488) chr6:1728011-2021707(probes 568159:568344) 0.0071819 0.0071906 Actual Copy Change Given 0.42788 0.012185 -0.30634 0.18073 -0.54724 -0.64874 -0.10552 0.54277 0.51296 -0.2449 -0.0016629 0.37323 -0.014916 -0.011335 0.026103 0.13954 -0.013677 -0.0078863 0.022585 0.020967 -0.0040162 0.00027728 -0.0060898 0 -0.74778 0.007094 0.35561 -0.23374 -0.54138 -0.27368 0.0026357 -1.0326 0.0038854 0.96473 0.58192 0.88446 0.0052749 0.01447 -0.093445 -0.23018 0.50898 0.5231 0.0080567 0.05362 0.58309 -0.0085766 0.00056263 0.00069327 0.0062481 0.044857 0.094637 0.36489 -0.046468 0.011353 0.04486 0.0032524 -0.0069195 0.003191 -0.025402 0.043865 -0.042788 -0.0063668 0.0087528 0.042501 -0.86484 0.45048 -0.0095426 -0.0067813 -0.45158 -0.66439 0.34958 0.012237 -0.50277 0 0.085012 0.084354 -0.6825 -0.015715 1.1414 1.062 -0.0071958 0.15988 0.39716 0.014214 0.0029133 0.013074 -0.0080244 -0.0034627 0.010564 0.08392 0.024548 0.032563 -0.033269 0.013492 -0.005261 -0.0019399 0.37117 0.0079175 -0.0068861 -0.49757 0.18965 0.0094662 -0.3773 0.00097064 0.33053 -0.049695 -0.0051502 0.044715 -0.0069195 -0.14168 -0.041929 0.0024969 0.50863 0.64249 0.050665 0.23076 0.30982 0.026588 0.013074 -0.035312 -0.48984 -0.087528 -0.6014 0.019036 -0.0081857 -0.017391 0.48778 -0.51218 0.021884 -0.022881 0.048457 -0.0081624 0.13509 0.00013863 0.024548 0.015447 -0.0069195 -0.50432 0.45854 0.02539 0 0.021603 0 -0.71105 0.0026357 -0.024388 0.0030522 0 0.44545 -0.042652 0.55071 0.094562 0.23194 0.31034 0.032281 0.061438 0.014859 0.034113 0 -0.030318 0.0027745 0.29773 0.0077783 0 0.24918 Deletion Peak 13 - CN values 6q26 chr6:161693099-163153207(probes 659160:659806) chr6:161767520-163153207(probes 659201:659806) chr6:162132257-162136708(probes 659504:659505) 2.9081e-13 2.9081e-13 Actual Copy Change Given 0.35302 0 -0.29606 -0.2112 -0.53612 -0.61326 -0.19693 -0.5348 0.45324 0.3117 -0.022744 0.37323 -0.014916 -0.017391 -0.061814 0.12992 -0.023018 -0.013953 -0.7885 -0.88488 0.010564 -0.0051938 0.0095889 0.017963 -0.75487 -0.0081511 -0.1485 -0.2531 -0.018056 -0.27368 -0.69154 0.0075 0.0038854 -0.57575 -0.22293 -0.77682 -0.0099565 0.0093098 -0.15328 -0.19937 0.50898 0.51751 -0.020001 -0.012241 0.56773 -0.025756 0.00056263 -0.0053992 -0.0060904 0.4158 -0.087844 0.36133 -0.057136 0.0053674 0.029047 0 -0.020549 0.003191 0.22262 -0.023566 -0.061017 -0.016112 -0.0037395 -0.013351 0.094491 -0.46609 -0.53053 -0.013402 0.042307 0.027919 0.32543 0.0048579 -0.51391 0 0.082337 0.067088 -0.6856 -0.06927 1.1073 1.0311 -0.0071958 0.078799 0.41949 -0.038714 0.014091 0.012795 -0.010018 -0.055769 0 0.047552 -0.012851 0.012376 -0.043873 -0.3764 -0.005261 0.41396 -0.46067 -0.011247 0.0093098 0.1804 0.18965 0.03369 -0.059807 0.00097064 -0.12642 0.081322 -0.03084 -0.012119 -0.0069195 0.062223 0.020868 0.0024969 0.49528 0.64249 0.0067928 0.23038 0.40053 0.026588 0.0081959 -0.038306 -0.14811 -0.092294 -0.59487 0 -0.042404 -0.017391 -0.018704 0.52044 -0.015508 -0.022881 0.0019939 -0.0081624 0.13509 0.00013863 0.022585 0.015447 -0.034904 0.45669 0.45513 -0.0034627 0 0.016006 0 0.0077783 -0.015304 -0.024388 0.0030522 0.036512 -0.0048461 -0.046583 0.53749 0.094562 0.20244 0.30581 0.058367 0.11402 0.01419 0.022822 -0.013999 -0.7491 -0.011198 -0.26731 -0.0040162 -0.018078 -0.19475 Deletion Peak 14 - CN values 7q31.1 chr7:110746146-111366370(probes 719668:719695) chr7:110236682-111354928(probes 719410:719689) chr7:110535012-110544716(probes 719550:719551) 0.01028 0.010707 Actual Copy Change Given 0.15328 0.39324 0.0079165 0.028074 0.018943 0.026373 0.097833 -0.0012473 0.97809 0.31947 0.60539 0.36305 0.52643 0 0.86872 0.14335 0.0064481 -0.010094 -0.0023553 0.01619 0 0.64524 0.544 -0.0026943 0.7087 -0.01793 0.43024 -0.2732 1.1569 0.017124 0.0023581 0.0016915 0.17076 -0.60757 0.62279 -0.00065435 0.82881 0.98489 0.70208 0.86136 1.4333 1.0623 -0.0015243 -0.032901 0.36667 0.022865 0.020496 0.6703 0.32677 0.065083 0.42738 0.078369 1.2647 -0.012418 0.27632 -0.0022941 0.3543 -0.005814 0.35897 0.53713 0.019503 0 0.61606 0.4266 0 -0.0054676 0.44325 0.035383 0.01967 0.019363 1.1362 0.00055584 -0.54703 0.078871 0.14355 0.00597 0.015587 1.3537 1.2174 1.1558 0.53222 0.20893 0.86433 0.45487 0.043299 0.094056 0.003191 0.00083195 -0.0037395 0.37693 -0.010646 0.013011 0.46861 0.1095 0.099142 0.30633 0.74404 0.45632 0.010285 0 0.39048 0.068665 0.042166 -0.0042929 0.70641 0.068808 0.091126 0.6381 0.6513 0.033127 0.60047 0.0094491 0.32834 0.69933 0.0019302 0.43334 0.78515 0.4499 0 0.03214 -0.42506 0.45486 0.61709 -0.033132 0.65642 1.4711 -0.01939 1.4459 -0.00097017 0.0041632 0.72345 0.0039084 -0.082668 -0.0044312 0.039478 0.010982 0.71754 1.0776 0.44995 0.038913 1.2061 0.017544 -0.0013858 0.60292 0.099579 -0.016017 0.00097064 0.52101 0.83864 0.22607 -0.0012473 0.11001 0.30409 0.72396 0.78311 -0.050977 0.51211 0.05153 0.011846 0.54006 0.51814 0.093782 0.32995 0.58973 0.24404 Deletion Peak 15 - CN values 8p23.2 chr8:3548028-4251283(probes 746025:746389) chr8:2784419-4854274(probes 745313:746724) chr8:1-33228198(probes 744545:764044) 7.8512e-16 7.8512e-16 Actual Copy Change Given -0.086651 -0.48611 -0.36901 -0.41552 -0.57584 -0.65065 -0.1947 -1.1472 -0.74926 0.057875 -0.015329 -0.38677 -0.62884 -0.99512 -0.039529 -0.6095 0.013145 0.86314 -0.016649 -0.88612 -0.00097017 0 -1.1838 -0.00027724 -0.75694 -0.80293 -1.2465 -0.76434 -1.2929 -0.9127 -0.68597 -0.017391 0.036794 -0.58608 -0.8163 -0.0040162 -0.8919 -0.002217 -0.091726 -1.2929 -0.16686 -0.09512 -0.74629 -0.83212 -0.43821 0.030732 -0.64972 -0.74612 -0.0059522 -0.39378 -0.029721 -0.41157 -0.057866 0.69945 -0.32727 -0.033753 -0.64968 -0.0087146 -0.74945 0.29024 -0.024251 -0.51404 -0.69739 -1.2929 -0.86539 -0.48243 -1.0429 -0.61508 -0.54613 -0.806 0.57523 -0.11561 0.0093098 -0.055296 -0.68988 -0.87914 -0.0063791 -0.6834 -0.020669 -0.14811 -0.52604 -0.26221 -0.95442 -0.20896 -0.85631 -0.29154 -0.6008 -0.013264 -0.67214 -1.1709 -0.01037 -1.2929 -0.093667 0.28564 -0.11273 0.47358 -0.89549 -0.017666 -0.0030475 -1.2037 0.16145 0.010285 -0.43669 -0.026394 0.48733 -0.49068 -0.99712 -0.74291 0.5625 -0.87595 -0.43434 -0.041702 -0.26889 -0.048207 -0.96761 -0.43101 -0.98752 -0.80538 -0.016017 0.0012481 -0.86097 -0.92951 -0.62265 -0.77311 -0.7281 -0.88588 -1.1298 0.59638 -0.096044 0.0087854 -0.78181 -0.89427 -0.011749 -0.005814 -0.021273 0.75951 -0.052126 -0.648 -0.028901 -0.85845 0.1345 -0.033132 -0.0026322 -0.76252 -0.3495 -0.42046 -0.007732 -1.1206 -0.4564 -0.54017 0.55107 -0.69744 -0.67205 -0.24394 -0.055095 -0.10085 -0.60893 -0.026851 -0.0048185 -0.46061 -0.62789 -0.70837 0.0036223 0.55531 -0.58696 Deletion Peak 16 - CN values 8q11.1 chr8:11648790-90944738(probes 749558:793441) chr8:42932479-47463861(probes 769155:769156) chr8:42933373-47464064(probes 769156:769157) 0.20625 0.21034 Actual Copy Change Given -0.06048 -0.48138 0.84734 0.47121 -0.52522 -0.032587 -0.17778 0.95146 0.49107 0.057875 -0.015329 0.019168 0.49459 0.57077 -0.024896 0.84459 0.013145 0.86314 -0.0049844 1.7197 -0.00097017 0 -0.56694 -0.00027724 1.4757 0.70702 0.38721 1.1573 0.33808 0.083487 -0.029857 -0.017391 0.043015 0.099288 0.62115 -0.0044312 0.1592 -0.002217 -0.093076 -0.19733 1.795 -0.09512 0.65737 -0.018807 -0.43821 0.5259 0.63172 -0.0008316 -0.0059522 0.44933 -0.029721 0.34704 -0.059962 0.69945 -0.32727 -0.0056934 -0.025346 -0.0087146 0.29018 0.30649 -0.024251 0.74784 -0.32507 1.1884 -0.020961 0.42917 0.91077 0.88226 0.49787 1.3221 0.57402 0.008892 0.0093098 0.0037465 0.25527 0.56134 0.73208 1.8009 -0.018198 1.0153 2.0874 -0.26221 1.7283 0.38684 0.77714 0.09638 0.52608 -0.013264 1.2684 -1.0369 1.3134 -0.64903 0.4502 0.27717 0.27332 0.46639 0.61915 -0.017666 -0.0030475 0.18116 0.72301 0.010285 0.48406 -0.011473 0.4977 0.29995 0.0025414 1.552 0.5625 -0.076309 -0.001836 -0.0071958 0.41262 -0.048207 -0.4303 -0.3135 0.39529 0.80607 -0.016017 0.0012481 0.4321 0.69716 0.035242 0.98556 0.64888 1.3207 -0.024874 0.53872 -0.11339 0.0087854 0.45911 -0.01775 -0.011749 -0.005814 -0.010094 0.75951 -0.052126 0.55283 -0.028901 -0.83292 0.1345 0.0091705 -0.0026322 1.1327 0.21499 3.3826 -0.0045695 0.26875 0.0070826 0.39579 0.55107 0.034746 0.67493 -0.17132 0.12505 -0.056338 -0.57061 -0.018078 -0.0048185 0.358 1.0001 0.52225 0.46115 0.55531 0.77406 Deletion Peak 17 - CN values 10q21.1 chr10:53057593-54077929(probes 923157:923939) chr10:52739810-54061437(probes 922905:923928) chr10:53303711-53418487(probes 923352:923437) 0.0014146 0.0017045 Actual Copy Change Given -0.24326 0.32715 -0.090308 0 -0.20747 -0.0020784 -0.16459 0.0081959 -0.078028 0.030951 -0.62979 -0.085387 -0.020138 -0.45319 -0.010232 -0.21268 -0.0091286 -0.0016629 0.006109 -0.86641 -0.0070576 -0.00027724 -0.60158 -0.78866 0.01922 -0.0048348 -0.11077 -0.19862 -0.52328 -0.38041 -0.0053202 -0.0059522 -0.010232 -0.58392 0.028341 0.012097 -0.017991 -0.011473 -0.021279 0 -0.0085766 -0.010646 0.011818 0 -0.34492 0.0097276 0.011269 0.010564 -0.0031859 0.06494 0.017684 -0.66179 -0.055897 -0.75101 -0.083329 -0.00049314 0.011121 -0.0026322 -0.20862 -0.025233 0.038489 -0.011335 -0.32646 -0.044772 -0.041702 0 -0.00097017 0.0033299 -0.52334 0.0023581 -0.013815 -0.0018534 -0.53794 -0.94773 -0.24978 -0.10513 0.0020805 1.3113 -0.014073 -0.059827 0.0093098 -0.31589 -0.024524 0.56152 0 0.21991 -0.00064126 0.00041593 -0.61968 -0.0041546 0.0023581 -0.62503 -0.039665 -0.0047079 -0.0013858 0.0026977 -0.0031859 -0.0056757 -0.0015243 0.17814 0.098997 -0.093006 -0.067993 -0.66003 -0.03395 -0.21898 -0.36456 -0.011887 -0.007472 0.35888 -0.040876 -0.0078863 -0.0123 -0.0066432 -0.44735 -0.053967 -0.44739 0.019437 -0.021647 -0.0073339 -0.59731 -0.40112 0.031577 -0.048883 -0.0093722 -0.005814 -0.50095 0.043015 0.013911 0.0012481 -0.016927 0.010873 -0.0010319 -0.0060904 -0.024374 -0.122 -0.03245 0.00458 -0.0037395 0.0054139 -0.16294 -0.24156 0.0068554 -0.030447 0.0065262 -0.06566 -0.0038779 0.0091705 0.0040243 -0.039476 -0.015054 0.13605 -0.13755 -0.085319 -0.0051227 -0.023249 0.0054139 0.010424 -0.002743 0.00050304 -0.26877 0.071694 -0.021921 0.0068044 -0.13096 Deletion Peak 18 - CN values 10q25.2 chr10:86084854-135534747(probes 943216:973838) chr10:114706629-114933610(probes 960584:960714) chr10:101378924-115244595(probes 952477:960957) 0.014135 0.036487 Actual Copy Change Given -0.24568 -0.4558 -0.077551 0.0047333 -0.20995 -0.0020784 -0.15784 0.0081959 -0.056979 0.030951 0.00021906 -0.085387 -0.020138 -0.45308 -0.016154 -0.19373 -0.0091286 0.0016642 -0.00036586 -0.86641 -0.0070576 -0.00027724 0.011679 0.045991 0.021043 0.019374 0.3827 -0.19862 0.060936 -0.35881 -0.0053202 -0.017713 -0.019888 -0.54754 -0.026304 -0.79728 -0.0034627 -0.011473 -0.054463 0 -0.012576 -0.010646 0.011818 0.023804 -0.34492 0.46451 0.011269 0 -0.0031859 -0.35704 0.017684 -0.076145 -0.032119 -0.7602 -0.13121 -0.00049314 0.011121 -0.005261 -0.19029 -0.046116 -0.39085 -0.011335 -0.3424 0.40583 -0.1935 0.013581 0 0.0033299 -0.53205 -0.79419 -0.013815 -0.0016629 -0.53794 -0.0018014 -0.24752 -0.075211 -0.68469 -0.022722 -0.014073 -0.016387 0.0093098 -0.28804 -0.036538 -0.45147 0 -0.81071 -0.00064126 0.00041593 -0.036674 -0.0041546 0.013074 -0.62674 -0.039665 0.0098669 -0.0013858 0.0026977 -0.0031859 -0.51655 -0.0015243 -0.45672 0.41145 -0.027535 -0.067993 0.012516 -0.03395 -0.48649 0.03169 -0.011887 -0.007472 0.1682 -0.050945 -0.0078863 -0.0035695 -0.0044312 -0.43301 -0.053967 -0.44739 0.033342 -0.57209 -0.0012473 -0.12629 -0.40112 0.031577 -0.048883 0.018779 -0.005814 -0.50095 -0.60526 0.013911 0.037462 0.060133 -0.40628 0.0034687 -0.0060904 0.0091705 -0.122 -0.022469 0.00458 -0.0037395 0 -0.66679 -0.24156 0.013772 -0.030447 0.0065262 -0.06566 -0.0015243 -0.50898 0.072827 -0.026714 -0.015054 -0.067222 -0.13755 -0.085319 -0.0051227 -0.37881 0.0054139 0.0011093 -0.009791 -0.052042 -0.26612 0.071694 -0.021921 -0.66716 -0.13096 Deletion Peak 19 - CN values 11q22.3 chr11:101318898-126876165(probes 1029186:1045845) chr11:107743293-107981570(probes 1032887:1032901) chr11:107962205-107969368(probes 1032895:1032896) 0.054114 0.055439 Actual Copy Change Given 0.047268 -0.015655 0.13694 -0.20944 -0.54451 -0.45597 -0.040752 -0.015208 0.50288 -0.26173 -0.012713 -0.32629 -0.030131 -0.48109 -0.021373 0.11169 -0.022744 -0.013522 0.7372 -0.40517 -0.0016629 -0.66892 0.00013921 0.016565 0.0038854 -0.016005 -0.12473 -0.75149 0.48664 0.058879 -0.6738 -0.016292 -0.0073339 -0.79536 -0.019007 -0.00055444 -0.027124 0 -0.059471 -0.83994 0.59638 0.0013868 0.0040243 -0.81805 -0.0059522 0.016985 -0.33825 -0.0048461 -0.0041546 -0.36488 0 0.33935 -0.55932 -0.0010164 0.011264 -0.00049314 -0.0014037 -0.0038779 -0.19743 -0.0066432 -0.020687 -0.012989 0.0049165 0.013264 0.18132 0.0061978 0.43682 0.0068044 -0.0071958 0.0048579 -0.037218 -0.012851 -0.54804 -0.013656 0.10877 0.059339 0.0040243 -0.043403 -0.010215 -0.038034 -0.0026322 -0.32698 0.32125 -0.12239 -0.80633 -0.79745 -0.010232 0 0.0015255 0 -0.0012473 -0.63491 -0.062764 -0.35476 -0.0039565 -0.44555 -0.44566 0.44172 -0.0038779 -0.46121 -0.016704 0 0.14935 -0.0081022 0.31034 0.32189 -0.47239 -0.01409 -0.0059522 0.074121 0.45747 -0.015191 0.31791 0.58722 -0.44173 0.40817 0.37101 -0.35675 -0.57885 -0.033677 0.031436 -0.064993 -0.55707 0.34795 -0.011083 -0.0069195 0.43384 -0.60352 -0.017803 0 0.036 -0.01058 -0.0033243 0.00069327 -0.81424 -0.83284 -0.034495 -0.00065141 -0.016017 -0.0011087 0.29835 -0.28893 0.0019418 -0.01037 0 0.3013 -0.0062286 -0.040616 -0.45527 -0.046041 -0.019314 -0.0083713 0.073546 0.25262 0.2236 0.48861 -0.0049844 0.0058309 -0.0031583 -0.036452 0.023987 -0.0082853 -0.0020784 -0.012438 -0.0012473 Deletion Peak 20 - CN values 12q13.2 chr12:6791349-106699397(probes 1054328:1110209) chr12:12913904-91452893(probes 1057244:1100058) chr12:12520919-14265170(probes 1056974:1058154) 0.064633 0.067516 Actual Copy Change Given 0.073115 -0.0089038 -0.0096178 -0.19085 0.027357 0.0065262 -0.12239 0.02092 -0.051468 -0.23685 0.59134 -0.24186 0.035806 -0.073743 -0.0089906 0.0076392 0.013213 0.85201 0.00069327 0.015587 0.00083195 0.0030522 -0.006228 0.010703 0.008515 0.022316 -0.10381 0.2236 -0.014778 -0.46908 0.65866 0.0037465 0.013492 0.032422 0.28533 -0.75063 0.0029133 0.024523 1.6164 0.061079 -0.0069195 -0.0031504 0.00013863 0.027735 -0.34021 0.083198 0.0082039 -0.0094812 -0.0023553 0.067232 0.0072217 0.3827 -0.03751 -0.0016367 0.018246 -0.00090889 0 0.0016642 0.16364 -0.1329 0 0.0093098 -0.022881 -0.034581 0.3794 -0.0091743 -0.018353 0.04344 -0.22071 0.0114 -0.0056757 0.011261 0.047552 -0.074811 0.041317 -0.056981 0.0063871 -0.62765 1.2001 -0.0080244 0.0019845 0 -0.025893 0.034818 0.012655 0.048972 0.001803 0.0055529 -0.0071182 0.54153 0.69428 0.021603 0.038771 -0.34033 0.0022193 -0.024661 -0.027309 0 0.0097276 -0.0027772 -0.0018014 -0.015372 0 0.0019418 -0.015604 0.061079 0.081791 0.77733 -0.034223 -0.081871 -0.011623 0 -0.073076 -0.0042929 -0.39953 -0.089916 -0.027784 -0.25352 0.00083195 0.00027728 0.14905 0.22182 0.032986 -0.062581 -0.0043807 0.0081959 -0.047876 -0.54204 0.020623 0.75624 0.018016 -0.026988 -0.0073339 0.52031 0.020343 -0.14734 0.51607 -0.0016629 0.41563 0.0075 -0.13781 -0.28013 0.0036076 0.0084743 -0.0013042 0.31354 0.0044411 0.31129 0.0055529 -0.025209 -0.0022168 -0.045569 -0.13271 -0.080802 0.012934 -0.19381 -0.0023553 0.0114 0.0058587 -0.0075233 -0.058731 0.73817 0.0097276 -0.017803 0.74347 Deletion Peak 21 - CN values 14q11.2 chr14:1-21820453(probes 1180415:1181163) chr14:20895647-20905249(probes 1180667:1180678) chr14:1-24499753(probes 1180415:1181904) 0.0043084 0.0043676 Actual Copy Change Given 0 -0.44925 0.29047 0.020357 -0.4611 -0.6332 -0.72084 -0.51946 0.013754 0.017202 0.0022193 0.34982 -0.0123 -0.46504 -0.024803 -0.22342 -0.8089 -0.92748 -0.090626 0.029325 -0.0011087 -0.67095 0.041459 -0.0024938 -0.034223 -0.0041871 0.50325 -0.71185 -0.55657 -0.8257 0.0051359 -0.96018 0.016845 -1.127 -0.7172 -0.76723 0.0080567 -0.0067813 -0.048385 0.13554 0.058081 0.012097 0.010424 -0.81543 0.073258 0.080168 0.025399 -0.71107 0.017684 0.087534 -0.43431 -0.38772 -0.15901 0.012469 -0.41025 0.0024195 -0.61133 -0.0012682 -0.1963 -0.099736 0.042479 -0.0019399 0.0016642 -0.40436 -0.18383 -0.43587 -0.0059522 -0.26889 -0.50598 0.01447 -0.04428 0.011539 0.05694 -0.99381 -0.60931 -0.24618 0.013353 0.27939 -0.01049 0 0.0098669 0.20373 -0.040752 0.029044 0.78504 -0.056712 -0.0038779 -0.0041546 -0.59146 -0.48091 0.0098669 0.016565 -0.56535 -0.35453 -0.0027707 -0.077212 -0.0077482 -0.011198 0.0012481 -0.46919 -0.20647 -0.52747 0.040892 0.0015255 -0.38493 -0.20237 -0.46602 0 -0.63121 -0.026167 -0.55949 -0.0099565 -0.34171 -0.007472 -0.43204 -0.086868 -0.45544 -0.35436 0.0036076 0 -0.15362 -0.3937 -0.01904 -0.0034627 0.05179 0.0034687 -0.54602 -0.59954 -0.58579 0.0029133 0.038839 -0.062764 -0.46142 -0.0012473 -0.78833 -0.10026 -0.04211 0.01201 0.31916 -0.79911 -0.56744 -0.6146 0.0027745 0.018663 -0.33618 0.33324 0.0048579 -0.54865 0.0013868 -0.036674 -0.0056757 -0.65654 -0.017528 -0.51712 -0.43854 -0.48398 0.0015255 0.031155 -0.018463 -0.15515 0.0037465 -0.17372 -0.2837 -0.019314 -0.13406 Deletion Peak 22 - CN values 14q31.1 chr14:64110071-107349540(probes 1204246:1229576) chr14:81668556-81672105(probes 1215022:1215023) chr14:81645018-81768924(probes 1215011:1215077) 0.189 0.1927 Actual Copy Change Given 0 -0.47883 -0.31734 0.010949 -0.53438 0.0094491 -0.033677 -0.53726 -0.04104 0.017202 -0.010646 0.34982 -0.0123 0.45445 -0.027808 -0.22342 -0.8089 -0.0034627 -0.090626 0.029325 -0.0011087 -0.0024938 -0.52542 0.014296 0.60702 0.0008433 -0.64537 -0.19462 -0.55657 -0.86499 -0.010646 -1.0108 -0.44045 -0.59633 -0.7172 -0.76723 0.0080567 -0.0067813 0.0023143 0.13554 0.058081 -0.0044312 0.0076392 -0.81543 0.073258 -0.42898 0.012245 -0.73459 0.00041834 -0.3584 -0.062921 -0.38772 -0.14002 0.012469 -0.42156 0.0024195 -0.31622 0.00024343 -0.1963 -0.20248 0.053094 0.0040243 0.0016642 0.10794 -0.49653 -0.43587 -0.031496 -0.31891 -0.50598 0.008892 -0.054056 -0.025756 0.043173 -0.99381 -0.6147 -0.20834 0.01419 0.27939 -0.01049 -0.012162 0.0098669 0.20053 -0.029607 -0.43626 0.79239 -0.056712 -0.0038779 -0.0041546 -0.60667 -0.48091 0.0098669 0.016565 -0.56535 -0.35453 -0.0027707 -0.077212 -0.0077482 -0.012784 0.0012481 -0.46919 -0.20647 -0.56355 0.040892 0.0015255 -0.38493 -0.46727 -0.48336 0 -0.63507 -0.81843 -0.55949 -0.0099565 -0.34171 -0.007472 -0.43204 -0.086868 -0.45544 -0.35436 0.0036076 0 -0.15362 -0.3937 -0.01904 -0.0034627 -0.72121 0.019923 -1.091 -0.038083 -0.58579 0.010141 0.058991 -0.059538 -0.4748 -0.0012473 -0.0096806 -0.10026 -0.054016 0.019833 0.30793 -0.81538 -0.57476 -0.6146 0.0027745 -0.72279 -0.34695 0.33545 -0.00013862 -0.53022 0.0013868 -0.036674 -0.0082984 -0.69264 -0.017528 -0.53956 -0.44739 -0.47722 0.0015255 0.020063 -0.025182 -0.15515 -0.026851 -0.17372 -0.2837 -0.019314 -0.13406 Deletion Peak 23 - CN values 15q21.1 chr15:1-63139365(probes 1229577:1251615) chr15:45001788-45013397(probes 1239879:1239888) chr15:42542815-45582379(probes 1238871:1240070) 0.025797 0.097939 Actual Copy Change Given -0.24496 0.00050314 -0.0018769 -0.21687 -0.31879 -0.019177 0.25433 -0.54361 -0.023994 -0.32617 0.0083351 0.021397 0.00069327 -0.43886 -0.017529 -0.28055 -0.79386 0.0069435 0.0062875 -0.85701 -0.0022168 0.016705 -0.53612 -0.3432 -0.725 0.013225 -0.13962 -0.69938 -0.52747 -0.44221 0.0027358 0.0068044 -0.005261 -0.59485 -0.014778 0.02525 -0.0013858 -0.0027707 -0.087356 -0.46281 -0.85432 -0.54663 0.029325 -0.78827 -0.37876 -0.031632 -0.64358 -0.71435 -0.0070576 -0.3559 -0.413 0.0282 0.0097926 0.026888 -0.29827 0.0075616 -0.57713 0.0041632 -0.1752 0 -0.33894 -0.035585 -0.67747 -0.39638 0.070817 -0.40897 0 -0.42621 -0.51959 0.0043021 -0.005261 0.010703 -0.56694 -0.011611 -0.61412 -0.74104 -0.67095 -0.025693 -0.0016451 -0.021921 -0.49256 -0.27577 -0.025209 0.014749 -0.010646 -0.044822 0.0080567 0.010842 -0.58058 -0.5434 0.019783 -0.63614 -0.5426 -0.33075 0.004719 -0.31622 0.0073609 -0.0027707 -0.0069195 -1.2929 -0.20796 -0.0027707 -0.31727 0.0090312 -0.36748 -0.18974 0.025503 -0.0060904 -0.47109 0.24498 -0.024833 -0.016154 -0.29863 -0.018765 -0.4185 -0.064821 -0.42615 -0.086315 0.012795 0.010564 -0.13083 -0.38432 0.0871 0.045065 -0.42546 -0.81318 0.0060319 -0.57487 -0.56236 0.032563 -0.72602 -0.40716 0.0036076 0.00097064 0.014609 0.016425 0.0051359 -0.55614 -0.03286 0.057653 -0.54995 -0.59594 -0.67994 -0.67912 -0.32728 -0.37595 -0.014778 -0.32519 0.37019 0.17754 0.00083195 -0.6755 -0.1382 -0.065623 -0.39163 -0.46934 -0.57654 -0.01236 -0.0021892 0.058793 0.0094491 -0.16852 0.01433 0.020063 -0.26071 Deletion Peak 24 - CN values 15q22.33 chr15:67067796-67494822(probes 1253787:1254127) chr15:67350488-67491246(probes 1254012:1254125) chr15:67218892-67751852(probes 1253877:1254264) 4.0204e-06 1.2808e-05 Actual Copy Change Given -0.23521 0.00050314 -0.0018769 -0.21687 -0.31879 -0.019177 -0.15937 -0.54714 0.0024797 -0.3264 0.0083351 0 0.00069327 -0.43886 -0.017529 -0.21561 0.019083 0.0069435 0.0062875 -0.85035 -0.0022168 0.016705 -0.53612 -0.3432 -0.725 -0.00059989 0.35039 -0.69938 0 -0.49089 0.0077783 -0.019537 -0.005261 -0.59485 -0.014778 0.02525 -0.0013858 -1.2929 0.6959 -0.46281 -0.88943 -0.54663 0.025603 0.041839 -0.37876 0.054091 -0.0046998 -0.72782 -0.0070576 -0.83656 -0.43528 0.0282 0.031556 0.026888 -0.29827 0.0075616 -0.50629 0.0041632 -0.17061 0 -0.33894 -0.035585 -0.67747 -0.39638 0.070817 -0.40897 0 -0.42621 -0.51959 0.0043021 0.0029133 0.010703 -0.56694 -0.011611 -0.61412 -0.72234 -0.67095 -0.025693 -0.0016451 -0.021921 -0.49256 -0.27577 -0.025209 -1.2929 -0.010646 -0.044822 0.0080567 0.010842 0.080601 -0.5434 0.019783 -0.63614 -0.5426 -0.33075 0.004719 -0.31622 0.014051 -0.0027707 -0.0069195 -0.4594 -0.20796 -0.0027707 -0.31727 0.0090312 -0.36748 -0.013402 0.030423 -0.0060904 -0.47109 -0.16064 -0.024833 -0.016154 -0.29863 -0.018765 -0.4185 -0.062581 -0.42615 -0.086315 0.012795 0.010564 -0.13083 -0.38432 0.0871 0.043015 -0.42546 -0.81318 -1.2929 -0.57487 -0.56236 0.032563 -0.72602 -0.39675 0.0036076 0.00097064 0.0040243 0.016425 0.010146 -0.54391 -0.03286 0.037641 -0.54995 -0.59594 0.012934 -0.68641 -0.32728 -0.37595 0.0016642 -0.32519 0.37019 0.17754 0.00083195 -0.6755 -0.1382 -0.065623 -0.39163 -0.46934 -0.57654 -0.010784 -0.0021892 0.10521 -0.62054 -0.16852 0.01433 0.020063 -0.11352 Deletion Peak 25 - CN values 16p13.3 chr16:5144019-7780235(probes 1275449:1276928) chr16:6066397-7771745(probes 1276080:1276916) chr16:7369731-7376241(probes 1276499:1276500) 2.5201e-36 2.5201e-36 Actual Copy Change Given 0.052952 0.41055 -0.030205 0.0016786 0.025812 -0.034223 -0.056577 -0.013815 -0.068756 0.042244 -0.007295 0.38825 0.361 0.067232 0.12226 0.13643 0.03031 0.012934 -0.0069195 -0.37752 -0.020549 0.018214 0.0036082 0.08392 0.031718 0.010714 -0.057924 -0.17094 0.01433 0.044857 -0.0091286 -0.020549 -0.031223 -1.2232 0.69148 0.025812 -0.019324 -0.033132 -0.11499 0.56081 -0.0056757 0.55148 -0.71995 0.073071 -0.41476 -0.035448 -0.039793 0.024689 -0.0098185 -0.3326 0.063366 0.04741 0.50513 0.020436 0.21407 0.0067268 0.085365 -0.0044312 0.042674 0.011539 0.016146 0.0068044 0.61707 0.072449 0.13178 -0.39857 -0.025893 0.053664 -0.025301 -0.010206 0.44596 -0.0066432 0.063509 0.078332 0.074121 0.098706 0.023706 1.0762 1.2396 1.1355 0.037359 0.23295 0.89106 -0.020961 -0.04048 0.022356 0.0038854 -0.0016629 0.071104 -1.0709 0.028341 0 0.38287 0.01447 -0.0018014 0.011121 0.32689 -0.028628 -0.019863 0.13907 -0.0123 -0.028218 -0.037082 0.63226 0.18631 0.043157 0.097804 0.65756 0.018803 -0.068663 0.85378 -0.023977 0.15861 0.66845 -0.095923 0.01323 -0.0026322 -0.0022818 0.0027745 -0.028355 -0.37121 0.4406 -0.031714 0.070673 0.062486 0.043157 0.068585 0.12564 0.029184 0.087354 0.12452 0.065226 -0.011198 -0.0085766 -0.015054 0.017404 0 0.053521 -0.04983 -0.024388 0.43294 0.056085 -0.73582 -0.046448 0.039902 -0.0078863 -0.0079738 0.015447 -0.010922 -0.073877 0.5865 0.037145 0.30521 0.74976 -0.44685 0.030805 0.0058309 -0.1272 -0.017913 0.37341 0.015028 -0.17194 -0.00055444 0.028903 -0.02562 Deletion Peak 26 - CN values 16q23.1 chr16:78098006-79299841(probes 1306760:1307825) chr16:78129058-79247026(probes 1306791:1307796) chr16:78583258-78586506(probes 1307294:1307295) 3.8419e-05 3.8419e-05 Actual Copy Change Given 0.052952 0.41055 -0.030205 0.0016786 0 -0.034223 -0.056577 0.50898 0.425 0.61273 -0.0034627 0.38825 0.33354 -0.43994 0.12579 0.14637 0.03031 0.012934 -0.0069195 -0.39185 -0.020549 0.034113 -0.69541 0.058367 0.031718 0.018674 -0.057924 -0.17094 0.46793 0.027945 -0.0091286 -0.020549 -0.031223 -0.57318 -0.048613 0.025812 -0.014778 -0.033132 -0.11015 0.56081 -0.034359 -0.55296 -0.73209 0.01821 0.043015 -0.011749 -0.63953 0.024689 -0.0098185 -0.35179 0.063366 -0.40429 0.51 0.020436 0.17152 -0.028431 0.049831 -0.0044312 0.042674 0.021792 0.016146 0.012491 0.62551 0.070171 0.11976 -1.0225 -0.0078863 0.053664 0 0.015866 0.44596 -0.0066432 0.063509 0.11012 0.074121 0.085799 0.020063 1.0762 1.2396 1.1501 0.022007 0.23295 0.92533 0.42452 -0.016429 0.046417 0.0038854 -0.0016629 0.07254 0.10862 0.0094307 0 0.4951 -0.28489 -0.0018014 0.011121 -0.33144 -0.015036 -0.019863 0.14087 -0.0123 -0.028218 -0.037082 -0.0011087 0.1786 0.097979 0.097804 0.029888 0.018803 -0.07921 0.87883 -0.023977 0.14344 0.66845 0.019071 -0.011561 -0.0026322 -0.0022818 0.0027745 -0.028491 -0.43322 0.4406 -0.029857 0.070673 0.062486 0.043157 -0.12701 0.088548 0.60124 0.045708 0.10094 0.065226 -0.022881 -0.0085766 -0.064374 0.017404 0 0.047126 0.44223 -0.028491 0.43294 0.056085 -0.016704 -0.69142 0.022999 -0.0078863 -0.048018 -0.51053 -0.46249 -0.35988 0.56614 0.037145 0.29453 0.31002 -0.44642 0.36781 0.53134 -0.12213 -0.017913 0.37341 0.0052749 -0.17194 -0.00055444 0.028903 -0.02562 Deletion Peak 27 - CN values 17p11.2 chr17:8300098-25626166(probes 1317696:1323945) chr17:14131834-21256583(probes 1321661:1323795) chr17:15569109-15579289(probes 1321667:1321668) 0.077076 0.075861 Actual Copy Change Given 0.039054 -0.47337 -0.36414 -0.43679 -0.55397 -0.65491 -0.31038 -0.5791 -0.012179 -0.54506 0.0072217 -0.33462 -0.59312 0.033408 -0.4806 -0.58686 -0.70181 0.0043021 -0.78967 -0.85757 -0.0055375 -0.67573 -0.57001 0.069382 -0.72914 -0.57801 -0.19387 -0.72394 -0.026441 -0.86421 -0.68378 -0.011749 -0.016979 -0.061865 -0.78049 -0.79408 -0.84171 -0.95895 -0.12983 -0.90571 0.087063 -0.54875 -0.70702 -0.80769 -0.012438 -0.41794 -0.67966 -0.74002 -0.007472 -0.35874 0.22993 -0.40516 -0.5093 0.037453 -0.51506 0.010904 -0.60177 0.0040243 -0.18227 -0.66716 -0.027808 -0.50446 -0.70091 -0.40524 -0.77778 -0.40797 -0.51414 -0.4983 -0.53226 -0.82757 0.00081393 0.017824 -0.52379 -1.0224 -0.62865 -0.75607 -0.6749 -0.67834 0.0015433 -0.061152 -0.49892 -0.76915 -0.48974 -0.46727 -0.85718 0 -0.60566 0.015866 -0.6096 0.033549 0.03031 -0.64443 0.0054139 -0.34595 0.036935 -0.44199 -0.41373 -0.56186 -0.013402 -0.46994 -0.21985 -0.58637 -0.39675 -0.65445 0.35332 0.094927 -0.50061 0.037217 -0.67949 -0.062092 -0.59254 -0.016704 -0.040359 -0.057924 -0.40673 -0.34385 0.0024969 -0.34864 -0.58471 0.0020805 -0.48092 -0.43133 -0.61815 -0.72155 -0.67913 -0.82838 -0.58584 -0.54512 -0.58382 0.039337 -0.70842 -0.4023 -0.015191 -0.013642 -0.77082 -0.81145 -0.25079 0.068378 -0.11668 -0.87891 -0.56266 -0.23997 0.0029133 -0.65826 -0.31867 0 -0.0023428 -0.55537 -0.46153 -0.50815 -0.59205 -0.69337 -0.29213 -0.53022 -0.019863 -0.090955 -0.59019 -0.10289 -0.018875 -0.63288 -0.59906 -0.015038 -0.35099 0.041317 0.17302 Deletion Peak 28 - CN values 18p11.31 chr18:1408050-3820764(probes 1351323:1352488) chr18:2535815-3029228(probes 1351830:1351994) chr18:2547301-2783455(probes 1351833:1351834) 0.078666 0.077076 Actual Copy Change Given -0.2732 -0.45323 -0.3382 -0.19035 -0.53398 -0.01037 -0.16548 -0.5201 -0.69804 -0.57422 -0.0059522 0.68152 -0.59993 2.0029 -0.45758 -0.58657 -0.80186 -0.90827 0.053237 0.89267 -0.0008316 -0.66494 -0.55276 -0.78032 -0.70028 0.00028862 -0.59419 1.2637 -0.55767 -0.86255 0.02511 -0.96875 0.0075 0.72244 -0.7131 -0.76629 -0.5713 -0.90403 -0.079385 -0.36431 -0.89097 -0.49184 -0.72941 0.031956 -0.78799 -0.29 -0.63594 -0.71809 -0.0049844 0.054945 -0.50065 -0.37369 0.076689 -0.76341 -0.3973 0.001032 -0.61514 0.0023581 -0.72247 -0.63542 -0.39319 -0.31669 -0.31692 -0.3898 -0.50906 0.016375 -0.48638 -0.54824 -0.52706 -0.78917 -0.62684 -0.006188 -1.0768 -1.0205 -0.61949 0.0089486 -0.68761 -0.67754 -0.015311 -1.0605 -0.50712 -0.84255 -0.45971 -0.44523 0.79452 -0.86843 -0.58333 -0.0076101 -0.59624 0.58973 0.00041593 -1.2929 -0.56077 -0.3463 -0.084262 -0.43832 -0.42396 -0.51333 -0.62798 -0.4643 -0.21466 -0.54744 -0.38135 -0.66309 -0.35442 -0.1975 -0.98648 -0.70397 -0.68342 -0.83789 -0.5578 -0.20921 -0.70934 -0.70944 -0.42747 -0.6767 -0.92533 -0.34222 -0.56585 -0.5289 -0.26853 -0.42403 -0.017666 -0.72323 -0.70524 -0.82489 -0.55402 -0.60119 -0.39575 -0.016031 -0.75647 -0.88974 -0.46972 -0.0022168 -0.0027707 -0.8222 -0.2624 -0.62265 -0.48491 -0.86224 -0.57476 -0.60883 -0.0019399 -0.67067 -0.33306 -0.38201 -0.0096806 -0.51753 -0.043873 0.42267 -0.36539 -0.70626 -0.39208 -0.54081 -0.45907 -0.47992 -0.58569 -0.0073339 -0.033105 -0.72809 -0.61681 -0.2223 -0.3463 0.01419 0.41747 Deletion Peak 29 - CN values 18q21.2 chr18:48472083-48705371(probes 1377409:1377613) chr18:48491525-48616860(probes 1377412:1377567) chr18:44824362-78077248(probes 1374772:1393404) 1.8121e-09 5.5409e-08 Actual Copy Change Given -0.2732 -0.45622 -0.31103 -0.19657 -0.53398 -0.62893 -0.16925 -1.0955 -0.72504 -0.57422 -0.0059522 -0.76691 -0.59993 -0.96506 -0.45758 -0.58657 -0.80186 -0.89855 -0.77243 -0.86672 -0.0008316 -0.66494 -0.55276 -0.78032 -0.7131 -1.2929 -0.59419 -1.2834 -0.84211 -0.86255 -0.66929 -0.98284 0.0075 -0.56783 -0.6992 -0.76432 -0.57501 -0.8726 -0.084171 -0.36431 -0.8528 -1.1516 -0.72941 -0.80271 -1.0733 -0.29 -0.60925 -0.71809 -0.0049844 -0.85588 -0.49089 -0.38558 -1.0601 -0.76341 -0.3993 0.001032 -1.2929 -0.0070576 -0.72247 -0.61968 -0.39319 -0.32646 -1.02 -0.92134 -0.50376 -0.45127 -0.48313 -0.54824 -0.52588 -0.79151 -0.62684 -0.0045695 -1.0768 -1.0134 -0.61949 -0.77022 -0.68761 -0.66499 -0.015311 -1.0447 -0.50712 -0.86236 -0.46536 -0.9195 -0.83258 -0.86843 -0.58333 -0.0076101 -0.60158 -0.56206 0.00041593 -1.2696 -0.56077 -0.71915 -0.084262 -0.43832 -0.42396 -0.52583 0.047978 -0.5422 -0.21466 -0.53632 -0.37583 -0.66309 -0.35442 -0.1975 -0.97382 -0.72195 -0.68342 -0.8394 -0.5576 -0.20921 -0.70496 -0.71372 -0.44701 -0.67239 -0.39123 -0.77324 -0.56585 -0.5289 -0.26853 -0.42403 -1.2919 -0.72323 -0.70524 -0.83548 -1.2929 -0.61345 -1.2072 -0.016031 -0.75647 -0.41355 -0.46972 -0.0022168 -0.80939 -1.2929 -0.2624 -0.62265 -0.48428 -0.83656 -0.58166 -0.62245 -0.0019399 -0.68332 -0.34366 -0.38201 -0.0038779 -0.51753 -0.43127 -0.050641 -0.34973 -0.70626 -0.39286 -0.54276 -0.44512 -0.47992 -0.58569 0 -0.032696 -0.72741 -0.61681 -0.2223 -0.3463 -0.68487 -0.55887 Deletion Peak 30 - CN values 18q22.1 chr18:65181982-66383463(probes 1387597:1388124) chr18:66338558-66383463(probes 1388091:1388124) chr18:44824362-78077248(probes 1374772:1393404) 7.5766e-06 0.02601 Actual Copy Change Given -0.2732 -0.45622 -0.64823 -0.19657 -0.53398 -0.62893 -0.16925 -1.0841 -0.72415 -0.57836 -0.0059522 -0.77477 -0.59993 -0.96506 -0.45758 -0.59334 -0.80186 -0.91596 -0.77243 -0.86672 -0.0008316 -0.66494 -0.55276 -0.78032 -0.71988 -0.01628 -0.59419 -1.2929 -0.56226 -0.86255 -0.66929 -0.98284 0.0075 -0.57041 -0.7103 -0.76432 -0.55226 -0.8726 -0.084171 -0.57605 -0.84267 -1.1516 -0.74728 -0.82859 -0.78933 0.5062 -0.60925 -0.69351 -0.0056148 -0.85588 -0.49089 -0.38558 -1.1992 -0.76341 -0.41355 0.001032 -0.63273 -0.0070576 -0.72247 -0.61968 -0.40065 -0.32646 -1.02 -0.92134 -0.50376 -0.47167 -0.48313 -0.54824 -0.50194 -0.79453 -0.62684 -0.0045695 -1.0768 -0.99263 -0.61949 -0.82736 -0.68761 -0.66499 -0.015311 -1.071 -0.50712 -0.86236 -0.46536 -0.92251 -0.83258 -0.86843 -0.58845 -0.0076101 -0.60158 -0.56206 0.00041593 -0.62912 -0.58863 -1.1012 -0.084262 -0.43832 -0.42396 -0.52583 -0.0081624 -0.5422 -0.21466 -0.53632 0.7922 -0.66309 -0.35442 -0.1975 -0.97382 -0.72195 -0.68342 -0.86939 -0.5576 -0.20921 -0.70496 -0.71372 -0.44701 -0.36404 -0.39123 -0.77324 -0.56585 -0.5289 -0.26853 -0.42403 0.05281 -0.72323 -0.70524 -0.84606 -0.98987 -0.61345 -1.2192 -0.051046 -0.75647 -0.43076 -0.46972 -0.0022168 -0.80939 -0.83057 -0.2624 -0.62265 -0.48428 -0.83656 -0.58166 -0.62245 -0.0019399 -0.68332 -0.36066 -0.38347 -0.0038779 -0.51753 -0.43127 0.36592 -0.34973 -0.70626 -0.39286 -0.54276 -0.45479 -0.47992 -0.58569 0 -0.032696 -0.74049 -0.61681 -0.38971 -0.3463 -0.68487 -0.86358 Deletion Peak 31 - CN values 18q23 chr18:74301825-78077248(probes 1391777:1393404) chr18:74684212-74849999(probes 1391951:1392031) chr18:44824362-78077248(probes 1374772:1393404) 1.8694e-05 0.0058333 Actual Copy Change Given -0.2732 -0.45622 -0.64823 -0.19657 -0.57051 -0.62893 -0.16925 -1.1866 -0.72415 -0.60906 -0.0059522 -0.77477 -0.59993 -0.96506 -0.45758 -0.59334 -0.80186 -0.92689 -0.77243 -0.86672 -0.0008316 -0.66494 -0.55276 -0.78379 -0.71988 -0.029131 -0.59419 -1.2929 -0.56226 -0.86255 -0.66929 -0.98284 0.0075 -0.57041 -0.7103 -0.7916 -0.63294 -0.96973 -0.084171 -0.64177 -0.93519 -1.2056 -0.74728 -0.82859 -0.78933 -0.024661 -0.60925 -0.74238 -0.0056148 -0.85588 -0.52503 -0.40794 -1.1711 -0.76341 -0.41355 0.001032 0.021323 -0.0070576 -0.72247 -0.61968 -0.40065 -0.32646 -1.02 -0.92134 -0.50376 -0.49577 -0.48313 -0.54824 -0.57964 -0.79453 -0.62684 -0.0045695 -1.1118 -1.0515 -0.61949 -0.79361 -0.68761 -0.66499 -0.015311 -1.071 -0.50712 -0.86236 -0.46536 -0.92251 -0.83258 -0.86843 -0.58845 -0.0076101 -0.60158 -0.56206 0.00041593 -0.62912 -0.58863 -0.74734 -0.084262 -0.43832 -0.42396 -0.52583 -0.0081624 -0.5422 -0.21466 -0.53632 0.87388 -0.66309 -0.35442 -0.1975 -0.97382 -0.72195 -0.73148 -0.86939 -0.5576 -0.20921 -0.77242 -0.73679 -0.44701 -0.36404 -0.97793 -0.77324 -0.56585 -0.5289 -0.26853 -0.42403 -0.61662 -0.72323 -0.70524 -0.84606 -0.98987 -0.63292 -1.2192 -0.051046 -0.75647 -0.43076 -0.46972 -0.0022168 -0.80939 -0.83057 -0.2624 -0.62265 -0.48428 -0.83656 -0.58166 -0.64195 -0.0019399 -0.68332 -0.36214 -0.38347 -0.0038779 -0.51753 -0.43127 0.36592 -0.34973 -0.70626 -0.39286 -0.54276 -0.45479 -0.47992 -0.58569 -0.051856 -0.032696 -0.74049 -0.61681 -0.34169 -0.3463 -0.68487 -0.86358 Deletion Peak 32 - CN values 19p13.3 chr19:1-59128983(probes 1393405:1417102) chr19:1-4183306(probes 1393405:1394322) chr19:1-4182938(probes 1393405:1394321) 0.23023 0.23047 Actual Copy Change Given -0.24119 -0.1354 0.44587 -0.015553 0.015447 -0.07067 0.027076 -0.047801 0.020185 -0.22237 -0.016704 0.035739 0.012376 0.039761 0.35888 0.28184 -0.007472 -0.014366 -0.77583 -0.014045 -0.026441 0.0037465 -0.59058 0.049682 0.024689 0.00014998 0.28675 0.28834 0.42452 0 -0.058327 -0.039122 -0.022332 0.46331 -0.14901 0.0068044 -0.018216 -0.10184 1.3025 -0.60555 -0.033273 -0.15426 0.0069571 0.015544 0 0.09333 -0.11246 -0.013264 0.26642 -0.34595 -0.08559 -0.074277 0.072375 0.0032835 -0.013812 -0.00077032 -0.57802 -0.0033243 0.29479 -0.012989 -0.017254 0.025531 -0.022332 0.10444 0.29289 0.062743 0.45377 -0.25092 -0.55276 -0.068261 0.035118 -0.042788 -0.0053992 0.018103 -0.042381 0.017264 0.092315 -0.66841 -0.030113 -0.11456 0.018383 0.15599 0.3025 -0.076678 -0.10946 -0.099604 0.00041593 -0.0036011 0.58041 0.018803 0.024969 -0.056307 0.48027 0.013353 -0.0015243 -0.01354 0.041741 -0.085192 -0.028628 0.065649 -0.21119 -0.10197 0.17106 0.013911 -0.0044853 -0.17588 -0.10345 0.060079 0.41814 0.58811 -0.62066 -0.0080244 -0.15272 0.47449 -0.3942 0.030924 0.2321 -0.363 -0.021921 0.00458 0.11873 -0.0072804 -0.55687 -0.0069195 0.074672 0.024035 -0.48864 -0.4787 -0.57704 0.016985 0.17383 0.067661 0.17076 -0.020824 -0.01409 -0.78193 0.019975 0.076854 0.31964 -0.86664 0.4168 -0.011749 -0.022195 0.611 0.035383 -0.36056 -0.026988 0.41463 -0.016979 0.0098669 0.038206 -0.11463 -0.12525 -0.48994 -0.0093814 0.031508 -0.042924 -0.014366 -0.029967 0.10857 0.049114 -0.12471 0.015168 0.034536 0.021463 Deletion Peak 33 - CN values 20p12.1 chr20:14301156-15274325(probes 1425843:1426070) chr20:13965126-16036135(probes 1425678:1426793) chr20:12334082-15797505(probes 1424588:1426546) 2.6061e-24 2.6061e-24 Actual Copy Change Given 1.0638 -1.2929 1.1284 0.010439 0.056331 0.47873 0.04812 1.0657 -0.25226 -0.61397 0.71773 0.082552 1.3325 0.47942 -0.33422 -0.2341 -0.80848 -0.91561 -0.0036011 -0.86176 0.60864 -0.66818 1.023 -0.77133 -0.75616 0.51282 1.7594 0.31161 -0.032587 0.17452 0.025952 1.0838 1.1018 -0.57112 -0.11743 -0.78159 -0.075211 -0.91198 2.2377 0.45292 0.89547 0.57487 0.71396 0.062607 1.1912 0.56223 -0.0048381 -0.74185 0.31001 0.093911 0.0024969 -0.37696 0.029023 0.73296 0.99987 0.0075616 -0.0088526 0.70907 0.60586 2.5719 0.12712 -0.48995 0.66567 0.049592 0.067661 0.46274 -0.0059522 1.2522 0.37117 -0.0048461 -0.67104 0.0097276 -1.11 1.249 1.4851 0.89407 0.79297 -0.048144 0.44158 1.1608 -0.50536 -0.82826 -0.47754 -0.44835 -0.85686 0.088982 0.61299 0.012516 -1.2385 -0.55917 0.020426 0.66623 0.48217 0.31562 -0.10565 -0.38493 1.1654 0.45054 0.52993 0.19542 0.69316 0.0036076 0.2153 1.1947 0.93752 -0.48334 1.0127 -0.032996 -0.03095 1.3311 0.47285 1.4153 1.7366 -0.75616 0.53132 0.49465 3.2997 -0.36765 -0.57388 0.52976 -0.092478 -0.46159 0.026233 0.20167 -0.69642 -0.25624 1.5002 -0.60516 0.078582 -0.85979 0.073887 -0.41498 0.87727 0.0065262 0.62843 0.82196 0.73057 -0.59935 -0.49684 -0.033405 1.296 -0.59973 0.017404 -0.70792 -0.33133 1.6894 -0.012003 0.52066 -0.23239 0.85838 1.0962 -0.6987 -0.4003 1.1714 1.8235 0.98815 1.8656 0.18662 0.45857 0.73371 -0.60293 0.86277 0.72017 0.59602 -0.25067 Deletion Peak 34 - CN values 21q11.2 chr21:1-15447211(probes 1454120:1454140) chr21:1-15377835(probes 1454120:1454120) chr21:1-26649218(probes 1454120:1460994) 6.2801e-07 6.2801e-07 Actual Copy Change Given -0.21243 -0.45108 -0.30474 -0.086214 -0.065581 -0.60941 -0.057924 -0.0062286 -0.086572 -0.57639 0.0049969 -0.78188 -0.57397 -0.45747 -0.44059 0.09188 -0.16637 -0.46908 -0.7738 -0.025346 -0.0020784 -0.22736 -0.54724 0.032845 -0.72163 -0.019303 -0.63897 -0.16663 -0.027945 -0.84211 0.012097 0.0022193 -0.93872 0.12358 -0.016979 0.022164 -0.0052709 0.018663 -0.11682 0.32769 0.13583 -0.47733 -0.078278 0.0031483 -0.34733 0.021323 0.47616 0.025952 -0.011198 -0.38134 -0.86145 0.021043 0.45885 0.012888 -0.71728 0.0038079 0.024408 -0.0037395 -0.20677 -0.24703 0.028523 0.0058309 -0.3432 0.05272 -0.19087 -0.90094 -0.018078 -0.26167 1.6815 0.64928 -0.082137 -0.024065 0.00055459 0.0065262 0.081899 -0.0076543 0.74024 -0.053144 -0.025876 -0.030267 0.029466 -0.84094 -0.46579 -0.12862 -0.83276 -0.95739 0.00027728 0.0038854 -0.11272 -0.15771 -0.78294 -0.62064 -0.07067 -0.35099 -0.0088526 -0.31611 0.34047 -0.023155 0.00055459 -0.041845 -0.011749 -0.017803 -0.11116 -0.0027707 0.18465 -0.20473 -0.46347 -0.00097017 -0.06048 -0.79101 0.033655 -0.019726 -0.034495 0 -0.45818 -0.040159 -0.42724 -0.6322 0.092025 -0.028765 -0.14901 -0.22633 -0.056712 -0.33537 -0.024411 -0.83527 -0.01788 -0.028765 -1.1779 -0.84467 -0.7413 -0.84515 -0.23594 -0.01037 -0.42112 0.017963 -0.051316 -0.59964 -0.49871 -0.32426 -0.081339 -0.10723 -0.0080528 0.016425 0.011121 0.35235 -0.0018014 -0.53246 -0.45072 -0.040209 -0.0051227 -0.86448 0.0026357 -0.99701 -0.46456 -0.10939 0.0029133 -0.11299 -0.0066156 -0.41645 0.013772 -0.18054 -0.02384 -0.053746 -0.27045 Deletion Peak 35 - CN values 22q13.31 chr22:44391372-51304566(probes 1487745:1491262) chr22:46063576-46242166(probes 1488971:1489100) chr22:44205320-51304566(probes 1487565:1491262) 0.00082955 0.00082955 Actual Copy Change Given -0.029038 -0.029498 0.27891 -0.013388 -0.57259 -0.68761 -0.028901 -0.060211 0.018786 -0.27292 -0.016292 -0.34314 -0.007472 -0.43072 -0.032641 -0.22515 0.010095 0.00069327 -0.78673 -0.83579 -0.023977 -0.6703 -0.55537 -0.75053 -0.74629 0.026806 -0.048613 -0.29898 -0.027261 -0.34824 -0.01106 -0.062361 -0.038714 0.061651 -0.11077 -0.78631 -0.015054 -0.082483 0.70507 -0.36408 0.82804 -0.54814 0.038913 0.0082922 -0.3551 -0.68606 -0.065037 0.008892 -0.0063668 0.07369 -0.13587 -0.39007 -0.51197 0.040845 -0.026027 0.0029747 0.13302 -0.013127 -0.15533 -0.00041585 0.054376 0.017963 -0.34102 -0.38287 -0.17424 -0.41128 0.40377 -0.050506 -0.54633 -0.83889 0.014609 -0.012989 0.043723 0.0020805 -0.13781 -0.51825 0.053806 -0.02268 -0.027324 -0.086784 0.034536 -0.7735 -0.034631 -0.051991 -0.056712 -0.90745 0.013213 0.0054139 -0.56296 -0.52879 0.026935 -1.2929 0 -0.34709 0.0054139 0.026233 -0.40473 0.41513 -0.02562 -0.46919 -0.21243 -0.047936 -0.41047 0.022444 0.18828 -0.48427 -0.51879 0.072971 0.017264 -0.23325 -0.11106 -0.027535 -0.1233 -0.029448 -0.41576 -0.012388 -0.0018014 -0.35663 -0.58637 -0.012728 -0.3878 -0.41175 0.021884 0.00055459 -0.41752 0.05637 -0.55623 0.69951 -0.60587 -0.83341 0.064708 -0.37347 -0.25878 -0.010232 -0.84619 0.016985 -0.031086 0.086666 -0.14245 -0.052936 -0.090493 -0.60781 -0.00041585 0.043723 0.034818 -0.027124 -0.030709 -1.1314 -0.0094046 0.011539 0.001803 -0.048953 -0.15118 -0.52605 -0.030677 -0.53829 -0.022528 -0.044822 -0.024908 -0.62678 0.034536 -0.16865 -0.013677 0.020903 -0.43225 Deletion Peak 36 - CN values Xp22.33 chrX:1-8143331(probes 1491263:1492030) chrX:1-4472941(probes 1491263:1491494) chrX:1-4476246(probes 1491263:1491498) 0.077076 0.077076 Actual Copy Change Given -0.0060904 0.081557 0.067153 -0.0064907 -0.601 -0.41794 -0.0060904 -0.0083005 0.15694 -0.062152 0.1136 -0.0069852 0.15114 0.0070826 0.10789 -0.01849 -0.10868 0.11008 -0.26637 -0.22989 0.028763 -0.0077482 -0.024935 -0.068663 -0.3579 0.035394 -0.011198 0.61897 0.1994 -0.19237 -0.57081 0.052383 0.023566 -0.10985 0.12049 -0.13368 0.049646 0.066945 0.22402 -0.034359 0.28121 0.03264 -0.057116 -0.077362 -0.034359 0 -0.72198 -0.029857 0.044007 -0.52849 -0.0023553 0.034254 -0.095851 0.031557 -0.011883 0.0038079 -0.35726 0.04259 0.010785 -0.042245 -0.030677 0.049256 -0.076805 0.12658 0.021463 -0.0032034 -0.16128 0.021884 -0.10867 0.7087 0.17106 -0.0092809 -0.23104 -0.12121 -0.10447 -0.040073 -0.091684 0.31201 0.3643 0.33626 0.046559 -0.074343 1.2041 -0.0083005 2.0671 -0.063301 0.057796 0.024689 -0.047531 -1.2929 0.060222 -0.56326 1.2505 -0.10985 0.015447 0 0.14771 0.11213 0.0095883 -0.13407 0.050108 -0.092874 -0.0059522 0.029184 -0.30294 0.0094491 -0.038061 -0.28323 0.074408 -1.1196 -0.018525 -0.010784 0.012125 0.21729 -0.16206 -0.15562 0.035665 -0.079139 -0.11848 -0.0037395 -0.046631 -0.013073 0.96843 -0.039258 0.099263 0.27206 -0.20181 0.053094 -0.069393 -0.95101 -0.011973 -0.0032342 -0.0042929 0.042024 -0.075345 -0.06424 0.34047 0.050392 0.11462 -0.055364 0.09246 -0.071739 0.05281 0.012376 0.048688 0.13362 0.02304 -0.23704 -0.03681 0.028269 -0.18131 -0.13138 0 -0.17967 0.034536 -0.017733 -0.026988 0.026514 0.028791 0.125 0.05071 0.079012 0.27869 0.07988 0.00083195