Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold TCGA-2G-AAEW-01A-11D-A42X-01 TCGA-2G-AAEX-01A-11D-A42X-01 TCGA-2G-AAF1-01A-11D-A42X-01 TCGA-2G-AAF4-01A-11D-A42X-01 TCGA-2G-AAF6-01A-11D-A42X-01 TCGA-2G-AAF8-01A-11D-A42X-01 TCGA-2G-AAFE-01A-11D-A42X-01 TCGA-2G-AAFG-01A-11D-A42X-01 TCGA-2G-AAFH-01A-12D-A42X-01 TCGA-2G-AAFI-01A-21D-A42X-01 TCGA-2G-AAFJ-01A-11D-A42X-01 TCGA-2G-AAFL-01A-21D-A42X-01 TCGA-2G-AAFM-01A-11D-A42X-01 TCGA-2G-AAFN-01A-31D-A42X-01 TCGA-2G-AAFO-01A-31D-A42X-01 TCGA-2G-AAFV-01A-11D-A42X-01 TCGA-2G-AAFY-01A-11D-A42X-01 TCGA-2G-AAFZ-01A-11D-A42X-01 TCGA-2G-AAG0-01A-11D-A42X-01 TCGA-2G-AAG3-01A-11D-A42X-01 TCGA-2G-AAG5-01A-11D-A42X-01 TCGA-2G-AAG6-01A-11D-A42X-01 TCGA-2G-AAG7-01A-11D-A42X-01 TCGA-2G-AAG8-01A-31D-A42X-01 TCGA-2G-AAG9-01A-11D-A42X-01 TCGA-2G-AAGA-01A-11D-A42X-01 TCGA-2G-AAGC-01A-21D-A42X-01 TCGA-2G-AAGE-01A-21D-A42X-01 TCGA-2G-AAGF-01A-31D-A42X-01 TCGA-2G-AAGG-01A-11D-A42X-01 TCGA-2G-AAGI-01A-11D-A42X-01 TCGA-2G-AAGJ-01A-11D-A42X-01 TCGA-2G-AAGK-01A-11D-A42X-01 TCGA-2G-AAGM-01A-11D-A42X-01 TCGA-2G-AAGN-01A-11D-A42X-01 TCGA-2G-AAGO-01A-11D-A42X-01 TCGA-2G-AAGP-01A-11D-A42X-01 TCGA-2G-AAGS-01A-11D-A42X-01 TCGA-2G-AAGT-01A-11D-A42X-01 TCGA-2G-AAGV-01A-11D-A42X-01 TCGA-2G-AAGW-01A-11D-A42X-01 TCGA-2G-AAGX-01A-11D-A42X-01 TCGA-2G-AAGY-01A-11D-A42X-01 TCGA-2G-AAGZ-01A-11D-A42X-01 TCGA-2G-AAH0-01A-11D-A42X-01 TCGA-2G-AAH2-01A-11D-A42X-01 TCGA-2G-AAH3-01A-11D-A42X-01 TCGA-2G-AAH4-01A-12D-A42X-01 TCGA-2G-AAH8-01A-11D-A42X-01 TCGA-2G-AAHA-01A-11D-A42X-01 TCGA-2G-AAHC-01A-11D-A42X-01 TCGA-2G-AAHG-01A-11D-A42X-01 TCGA-2G-AAHL-01A-11D-A42X-01 TCGA-2G-AAHN-01A-11D-A42X-01 TCGA-2G-AAHP-01A-12D-A42X-01 TCGA-2G-AAHT-01A-11D-A42X-01 TCGA-2G-AAKD-01A-31D-A42X-01 TCGA-2G-AAKG-01A-11D-A42X-01 TCGA-2G-AAKH-01A-11D-A42X-01 TCGA-2G-AAKL-01A-11D-A42X-01 TCGA-2G-AAKM-01A-11D-A42X-01 TCGA-2G-AAKO-01A-11D-A42X-01 TCGA-2G-AAL5-01A-11D-A42X-01 TCGA-2G-AAL7-01A-11D-A42X-01 TCGA-2G-AALF-01A-11D-A42X-01 TCGA-2G-AALG-01A-11D-A42X-01 TCGA-2G-AALN-01A-11D-A42X-01 TCGA-2G-AALO-01A-12D-A42X-01 TCGA-2G-AALP-01A-12D-A42X-01 TCGA-2G-AALQ-01A-12D-A42X-01 TCGA-2G-AALR-01A-21D-A42X-01 TCGA-2G-AALS-01A-12D-A42X-01 TCGA-2G-AALT-01A-11D-A42X-01 TCGA-2G-AALW-01A-11D-A42X-01 TCGA-2G-AALX-01A-11D-A42X-01 TCGA-2G-AALY-01A-11D-A42X-01 TCGA-2G-AALZ-01A-11D-A42X-01 TCGA-2G-AAM2-01A-11D-A434-01 TCGA-2G-AAM3-01A-11D-A434-01 TCGA-2G-AAM4-01A-11D-A434-01 TCGA-2X-A9D5-01A-11D-A434-01 TCGA-2X-A9D6-01A-11D-A434-01 TCGA-4K-AA1G-01A-11D-A434-01 TCGA-4K-AA1H-01A-11D-A434-01 TCGA-4K-AA1I-01A-11D-A434-01 TCGA-4K-AAAL-01A-11D-A434-01 TCGA-S6-A8JW-01A-11D-A434-01 TCGA-S6-A8JX-01A-11D-A434-01 TCGA-S6-A8JY-01A-11D-A434-01 TCGA-SB-A6J6-01A-11D-A434-01 TCGA-SB-A76C-01A-11D-A434-01 TCGA-SN-A6IS-01A-11D-A434-01 TCGA-SN-A84W-01A-11D-A434-01 TCGA-SN-A84X-01A-11D-A434-01 TCGA-SN-A84Y-01A-11D-A434-01 TCGA-SO-A8JP-01A-11D-A434-01 TCGA-VF-A8A8-01A-11D-A434-01 TCGA-VF-A8A9-01A-11D-A434-01 TCGA-VF-A8AA-01A-11D-A434-01 TCGA-VF-A8AB-01A-31D-A434-01 TCGA-VF-A8AC-01A-11D-A434-01 TCGA-VF-A8AD-01A-11D-A434-01 TCGA-VF-A8AE-01A-11D-A434-01 TCGA-W4-A7U2-01A-11D-A434-01 TCGA-W4-A7U3-01A-12D-A434-01 TCGA-W4-A7U4-01A-12D-A434-01 TCGA-WZ-A7V3-01A-11D-A434-01 TCGA-WZ-A7V4-01A-11D-A434-01 TCGA-WZ-A7V5-01A-11D-A434-01 TCGA-WZ-A8D5-01A-11D-A434-01 TCGA-X3-A8G4-01A-11D-A434-01 TCGA-XE-A8H1-01A-11D-A434-01 TCGA-XE-A8H4-01A-31D-A434-01 TCGA-XE-A8H5-01A-11D-A434-01 TCGA-XE-A9SE-01A-21D-A434-01 TCGA-XE-AANI-01A-11D-A434-01 TCGA-XE-AANJ-01A-11D-A434-01 TCGA-XE-AANR-01A-11D-A434-01 TCGA-XE-AANV-01A-11D-A434-01 TCGA-XE-AAO3-01A-11D-A434-01 TCGA-XE-AAO4-01A-11D-A434-01 TCGA-XE-AAO6-01A-31D-A434-01 TCGA-XE-AAOB-01A-11D-A434-01 TCGA-XE-AAOC-01A-11D-A434-01 TCGA-XE-AAOD-01A-11D-A434-01 TCGA-XE-AAOF-01A-11D-A434-01 TCGA-XE-AAOJ-01A-12D-A434-01 TCGA-XE-AAOL-01A-11D-A434-01 TCGA-XY-A89B-01A-11D-A434-01 TCGA-XY-A8S2-01A-11D-A434-01 TCGA-XY-A8S3-01B-11D-A434-01 TCGA-XY-A9T9-01A-11D-A434-01 TCGA-YU-A90P-01A-11D-A434-01 TCGA-YU-A90Q-01A-11D-A434-01 TCGA-YU-A90S-01A-11D-A434-01 TCGA-YU-A90W-01A-11D-A434-01 TCGA-YU-A90Y-01A-11D-A434-01 TCGA-YU-A912-01A-11D-A434-01 TCGA-YU-A94D-01A-11D-A434-01 TCGA-YU-A94I-01A-11D-A434-01 TCGA-YU-AA4L-01A-11D-A434-01 TCGA-YU-AA61-01A-11D-A434-01 TCGA-ZM-AA05-01A-12D-A434-01 TCGA-ZM-AA06-01A-12D-A434-01 TCGA-ZM-AA0B-01A-11D-A434-01 TCGA-ZM-AA0D-01A-11D-A434-01 TCGA-ZM-AA0E-01A-12D-A434-01 TCGA-ZM-AA0F-01A-21D-A434-01 TCGA-ZM-AA0H-01A-11D-A434-01 TCGA-ZM-AA0N-01A-21D-A434-01 Amplification Peak 1 1q21.2 chr1:75763492-206173924(probes 40783:101896) chr1:150168643-150532791(probes 67659:67723) chr1:120527362-154458931(probes 67534:69631) 0.088103 0.088103 0: t<0.1; 1: 0.10.9 1 1 0 1 0 2 0 0 1 1 0 0 1 1 1 2 1 0 1 1 0 1 1 0 0 0 0 1 0 1 1 0 1 0 0 0 1 2 0 0 1 0 1 0 0 1 0 0 1 1 0 2 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 1 1 1 1 0 0 1 1 1 0 2 1 0 0 1 0 0 0 1 1 0 0 1 0 0 1 1 0 0 1 1 1 0 0 0 1 1 Amplification Peak 2 2p24.1 chr2:1-51779748(probes 128604:159007) chr2:20421009-20810902(probes 141452:141688) chr2:1-50423606(probes 128604:158364) 0.0050216 0.0050216 0: t<0.1; 1: 0.10.9 0 0 0 1 1 1 0 0 1 1 2 0 0 0 1 1 0 2 0 1 0 0 1 1 0 0 0 1 0 1 1 1 1 1 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 1 1 0 2 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 2 1 2 1 1 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 1 1 0 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 Amplification Peak 3 3p13 chr3:47912704-109363046(probes 286181:318389) chr3:71068104-71145115(probes 299905:299961) chr3:71068104-71149426(probes 299905:299964) 0.23596 0.23596 0: t<0.1; 1: 0.10.9 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 1 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 2 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 Amplification Peak 4 3q27.3 chr3:164340364-194094109(probes 348618:364409) chr3:186610140-186619722(probes 359632:359641) chr3:156115457-197508419(probes 344416:365355) 7.0307e-05 7.0307e-05 0: t<0.1; 1: 0.10.9 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 1 0 1 0 0 1 1 1 1 1 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 1 0 0 0 2 0 0 1 2 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 1 0 2 0 0 1 1 1 0 0 1 0 2 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 Amplification Peak 5 4q12 chr4:55115758-57352301(probes 394802:396365) chr4:55146770-56252823(probes 394863:395775) chr4:48068827-67337096(probes 393366:401840) 4.2593e-09 4.2593e-09 0: t<0.1; 1: 0.10.9 0 0 0 0 0 1 1 2 0 0 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 Amplification Peak 6 7p22.1 chr7:1-10243693(probes 663553:667248) chr7:5564809-6569889(probes 665396:665720) chr7:1-10243861(probes 663553:667250) 0.019484 0.019484 0: t<0.1; 1: 0.10.9 1 1 1 1 1 0 1 2 1 0 1 1 1 1 1 2 1 2 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 2 1 2 1 1 0 1 1 1 1 2 1 1 0 1 1 0 1 1 1 1 2 1 1 0 2 1 1 0 1 1 0 0 1 1 1 1 1 0 0 0 1 0 1 1 0 1 1 2 2 1 1 2 1 0 2 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 1 0 2 2 1 1 1 1 2 1 1 2 1 1 0 1 1 0 1 1 1 1 1 1 1 2 Amplification Peak 7 7q11.22 chr7:63487324-108656546(probes 696845:718461) chr7:71513405-72359694(probes 700572:700810) chr7:65555055-74507701(probes 697332:701339) 0.035574 0.035574 0: t<0.1; 1: 0.10.9 1 1 1 1 1 0 2 2 2 2 1 1 1 1 1 1 1 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 0 1 1 2 1 1 0 1 1 1 1 2 1 1 0 1 1 1 1 1 0 1 1 2 1 0 2 1 1 0 1 1 0 0 1 1 1 1 1 0 0 0 1 1 1 1 0 0 1 2 2 1 1 1 1 0 0 1 1 0 1 1 0 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 2 0 0 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 Amplification Peak 8 8q11.23 chr8:54495678-57712567(probes 772747:774614) chr8:55272833-55817832(probes 773170:773526) chr8:52594322-99945446(probes 771665:798775) 8.4265e-05 8.4265e-05 0: t<0.1; 1: 0.10.9 1 1 1 1 1 1 1 1 1 2 1 0 1 2 1 0 1 1 0 2 1 1 0 1 2 1 2 2 2 1 1 0 0 1 1 1 1 2 0 1 1 1 1 0 2 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 2 2 2 1 1 1 1 1 0 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 0 0 1 1 2 1 1 1 1 1 1 0 2 1 1 1 0 0 1 1 2 1 1 1 1 1 1 Amplification Peak 9 8q23.3 chr8:70207598-146364022(probes 781972:825661) chr8:114399613-114413369(probes 806508:806512) chr8:114399613-114414582(probes 806508:806515) 0.13696 0.13696 0: t<0.1; 1: 0.10.9 1 1 1 1 1 1 1 1 0 2 0 0 1 2 1 0 1 1 0 2 1 1 0 1 1 1 2 0 1 1 1 0 0 1 1 1 1 2 1 2 2 1 0 0 0 2 1 0 2 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 0 1 0 1 0 0 0 1 0 0 2 1 0 0 1 0 1 1 0 0 1 1 1 1 0 1 1 1 0 2 2 2 1 1 1 1 1 0 1 0 0 2 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 1 0 2 1 1 1 1 1 1 0 2 1 1 1 0 0 0 1 1 1 1 1 1 1 1 Amplification Peak 10 12p13.33 chr12:1-11799340(probes 1050647:1056343) chr12:980180-1037228(probes 1050678:1050708) chr12:1-39241239(probes 1050647:1070101) 3.5918e-21 4.3088e-16 0: t<0.1; 1: 0.10.9 1 2 1 2 1 0 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 1 2 1 1 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 0 1 2 2 2 0 1 1 2 2 2 2 1 2 1 1 1 1 2 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 2 2 1 2 2 2 2 1 0 2 2 2 2 2 2 2 1 2 2 0 2 1 1 2 Amplification Peak 11 12p12.1 chr12:21545357-28751389(probes 1062406:1067032) chr12:25402469-25530012(probes 1064872:1064960) chr12:1-39241239(probes 1050647:1070101) 1.4729e-22 1.3574e-08 0: t<0.1; 1: 0.10.9 1 2 1 1 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 1 1 2 1 1 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 0 1 2 2 2 2 1 1 2 2 2 2 1 2 1 1 2 1 2 1 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 2 1 2 2 2 2 1 0 2 2 2 2 2 2 2 1 1 2 0 2 1 1 2 Amplification Peak 12 12p11.21 chr12:33181227-33200707(probes 1069932:1069941) chr12:33184591-33200496(probes 1069935:1069940) chr12:1-39241239(probes 1050647:1070101) 1.3385e-16 0.034061 0: t<0.1; 1: 0.10.9 1 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 1 2 1 1 2 1 1 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 0 1 2 2 2 0 1 1 2 2 2 2 1 2 1 1 2 1 1 1 2 2 2 2 1 0 2 2 2 1 1 2 2 0 1 2 2 2 2 2 2 2 1 2 2 1 2 2 2 2 1 0 2 2 2 2 2 2 2 1 1 2 0 2 1 1 2 Amplification Peak 13 12q15 chr12:69164647-72373494(probes 1087007:1089028) chr12:70206153-70234303(probes 1087723:1087736) chr12:68959388-72522241(probes 1086898:1089109) 0.00041421 0.00041421 0: t<0.1; 1: 0.10.9 0 1 1 1 0 1 1 0 1 1 0 0 0 2 1 1 1 1 1 0 1 1 1 1 2 1 0 1 1 1 1 1 0 1 1 0 1 2 2 0 1 1 1 0 1 1 1 2 1 1 1 0 0 1 1 0 0 0 1 1 1 1 0 1 2 1 0 1 1 0 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 0 0 0 0 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 1 0 0 2 0 1 0 0 1 1 0 1 1 1 0 1 0 0 1 2 2 0 0 1 1 1 Amplification Peak 14 16q21 chr16:31845698-71612345(probes 1287581:1302693) chr16:64227095-68417098(probes 1298906:1301403) chr16:55476495-70608986(probes 1293539:1302318) 0.035574 0.035574 0: t<0.1; 1: 0.10.9 0 0 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 Amplification Peak 15 20q11.21 chr20:26197900-29850834(probes 1433813:1433820) chr20:29843974-29850585(probes 1433814:1433819) chr20:26197900-30856743(probes 1433813:1434274) 8.4265e-05 8.4265e-05 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 0 1 2 1 1 0 1 1 1 0 1 0 0 1 0 0 1 2 0 2 2 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 1 1 2 1 0 0 0 0 0 0 0 0 1 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 2 0 1 1 0 0 1 1 0 1 1 0 0 0 0 0 0 Amplification Peak 16 22q11.21 chr22:18613558-22141824(probes 1475270:1475295) chr22:18613738-22141242(probes 1475271:1475294) chr22:18295131-29082627(probes 1475027:1478748) 5.309e-06 5.309e-06 0: t<0.1; 1: 0.10.9 0 1 0 1 1 0 0 1 1 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 2 1 1 1 1 1 2 0 2 1 1 0 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 1 1 1 0 1 0 1 1 0 1 0 0 1 0 0 2 0 0 1 1 1 0 0 2 1 0 0 0 1 1 0 1 1 0 0 0 1 1 Deletion Peak 1 1p36.31 chr1:1-48649489(probes 1:23925) chr1:1-8581014(probes 1:3221) chr1:1-19943822(probes 1:9028) 0.00046313 0.0009637 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 Deletion Peak 2 1p31.1 chr1:62146229-77102451(probes 32352:41722) chr1:71867963-72829346(probes 38745:39218) chr1:72336914-72342888(probes 38982:38983) 0.023574 0.045476 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 Deletion Peak 3 1q42.12 chr1:204529809-249250621(probes 100929:128603) chr1:226397003-226417206(probes 114993:114995) chr1:226401915-226445527(probes 114994:115008) 0.16985 0.16977 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 Deletion Peak 4 2q37.3 chr2:220768880-243199373(probes 246306:259408) chr2:239064480-239113102(probes 257615:257637) chr2:239074937-239082439(probes 257617:257618) 0.062762 0.065864 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 5 3p26.2 chr3:1-50611550(probes 259409:287173) chr3:1-3225450(probes 259409:259839) chr3:1-5218939(probes 259409:261092) 0.08422 0.08422 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 1 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 Deletion Peak 6 4q22.2 chr4:92521823-94741521(probes 415818:416839) chr4:93221332-94699200(probes 416131:416794) chr4:94129969-94132930(probes 416463:416464) 3.6144e-11 3.6144e-11 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 0 0 1 1 0 1 1 0 1 1 1 0 1 1 0 1 1 1 1 0 1 1 0 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 1 0 0 1 0 1 0 1 1 1 1 1 0 1 Deletion Peak 7 5p15.2 chr5:1-16049923(probes 467512:477350) chr5:10968873-11906311(probes 474607:475341) chr5:11418915-11423591(probes 474975:474976) 0.098913 0.098913 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 1 1 1 1 0 1 0 0 0 1 0 1 0 1 1 0 1 1 0 1 1 1 1 1 0 0 1 1 1 0 0 1 0 0 1 0 0 1 1 0 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 0 1 1 0 1 1 0 0 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 1 0 1 1 1 Deletion Peak 8 5p14.3 chr5:22139046-37847858(probes 480381:489048) chr5:21747980-22858567(probes 480156:480731) chr5:22304377-22311985(probes 480444:480445) 0.11998 0.11535 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 1 1 1 1 0 1 0 0 0 1 0 1 0 0 1 0 1 1 0 1 1 1 1 1 0 0 1 1 1 0 0 1 0 0 1 0 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 0 1 1 0 1 1 0 0 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 1 0 1 1 1 Deletion Peak 9 5q12.1 chr5:58998410-59780946(probes 498995:499381) chr5:58260298-59818245(probes 498450:499406) chr5:58659389-58966145(probes 498734:498973) 0.0071865 0.0074629 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 0 1 0 0 0 1 0 1 0 0 1 0 1 1 0 1 1 1 1 1 0 0 1 1 1 0 0 1 0 0 1 0 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 0 1 0 1 1 0 1 0 1 1 1 0 1 1 0 1 1 0 0 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 0 1 0 1 0 1 1 1 1 1 1 1 0 1 1 1 Deletion Peak 10 6p22.3 chr6:15109824-15538684(probes 577665:577768) chr6:15240710-15538684(probes 577726:577768) chr6:15197988-15539672(probes 577712:577770) 5.3812e-07 5.3812e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 Deletion Peak 11 6q26 chr6:155575868-165741428(probes 655319:661428) chr6:161767520-163153207(probes 659197:659802) chr6:161748481-163124151(probes 659189:659795) 0.0031874 0.0031107 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 Deletion Peak 12 7q11.22 chr7:69000716-70601215(probes 699096:699998) chr7:69054978-70260048(probes 699119:699835) chr7:69747461-69752140(probes 699478:699479) 0.051659 0.051318 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 13 7q35 chr7:108534673-159138663(probes 718393:744538) chr7:145806546-148119187(probes 738072:739532) chr7:147164661-147167932(probes 738803:738804) 0.11738 0.11535 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 Deletion Peak 14 9p24.3 chr9:1-71039939(probes 825662:848855) chr9:1-1540137(probes 825662:825814) chr9:1-12531492(probes 825662:831839) 7.3329e-05 0.065864 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 1 0 1 1 0 1 0 1 1 0 1 1 0 1 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 1 1 1 0 1 0 1 1 Deletion Peak 15 9p23 chr9:9437437-12687261(probes 830899:831910) chr9:8310705-10619051(probes 830178:831507) chr9:1-12531492(probes 825662:831839) 3.2685e-05 0.0009637 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 1 0 0 1 1 1 1 1 1 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 1 1 0 1 1 0 1 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 1 1 1 0 1 0 1 1 Deletion Peak 16 9q33.3 chr9:129609858-130003734(probes 887859:888074) chr9:129845685-129887007(probes 887987:888003) chr9:129870799-129873631(probes 887996:887997) 0.021089 0.040891 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 1 1 0 1 1 0 1 1 0 1 1 0 0 0 1 1 1 0 1 0 0 0 1 1 0 0 1 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 0 1 0 Deletion Peak 17 9q34.2 chr9:136602059-137007089(probes 891763:891980) chr9:136626706-136864934(probes 891781:891922) chr9:136734096-136737117(probes 891852:891853) 0.025521 0.061344 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 1 1 0 1 1 0 1 1 0 0 0 1 1 1 0 1 0 0 0 1 1 0 0 1 1 0 0 1 0 1 1 1 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 0 1 0 Deletion Peak 18 10p15.3 chr10:1-7202930(probes 893335:897846) chr10:1-742144(probes 893335:893420) chr10:468600-474367(probes 893378:893379) 0.055393 0.056739 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 1 0 1 0 0 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 0 0 1 0 1 1 1 0 0 1 1 0 1 1 0 1 1 1 0 0 1 1 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 0 1 1 0 0 1 1 0 1 1 1 1 0 1 1 1 0 0 0 1 0 0 1 1 1 0 1 1 0 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 Deletion Peak 19 10q23.1 chr10:82406275-85904649(probes 940590:943076) chr10:83632204-84751591(probes 941388:942233) chr10:84115516-84120246(probes 941811:941812) 0.1386 0.13915 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 1 1 1 0 1 1 1 1 0 1 1 0 1 0 1 0 0 1 1 0 1 1 0 1 1 1 0 0 0 1 0 0 1 0 1 1 1 1 1 0 0 1 0 1 1 0 1 1 0 0 1 1 0 1 1 1 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 1 1 0 1 1 1 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 1 1 0 0 0 1 0 1 0 1 0 1 0 0 Deletion Peak 20 10q26.3 chr10:134944852-135534747(probes 973749:973831) chr10:135004075-135534747(probes 973775:973831) chr10:129775361-135534747(probes 971296:973831) 9.1106e-08 9.1106e-08 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 0 1 0 0 1 1 0 1 1 1 0 1 0 0 0 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 0 0 1 1 0 1 1 0 1 1 1 0 0 0 1 0 0 1 0 1 1 1 1 1 0 0 1 0 1 1 0 1 1 0 0 1 1 0 1 1 1 1 1 1 0 1 1 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 0 1 1 0 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 0 1 0 1 0 1 0 1 0 0 Deletion Peak 21 11p15.5 chr11:1-63334217(probes 973832:1008172) chr11:1-718435(probes 973832:973883) chr11:1-1596245(probes 973832:974148) 0.1386 0.13915 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 1 1 1 1 0 1 0 1 1 1 0 1 0 1 0 0 1 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 1 0 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 0 0 0 1 0 1 1 0 1 1 0 1 1 1 0 1 0 1 1 0 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 0 0 1 0 1 1 0 0 0 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 0 0 0 1 1 0 0 1 1 0 1 1 1 0 0 1 1 0 0 0 0 1 1 1 1 1 1 1 1 Deletion Peak 22 11p12 chr11:1-135006516(probes 973832:1050646) chr11:40133134-41482335(probes 998710:999662) chr11:40835398-40837712(probes 999187:999188) 0.21504 0.24965 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 0 1 0 1 1 1 0 1 0 1 0 0 1 1 0 1 1 1 1 1 1 0 0 1 0 1 1 0 1 0 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 1 1 0 1 0 1 1 0 0 0 1 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 0 1 1 1 0 0 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 0 0 1 1 0 0 1 1 0 1 1 1 0 0 1 1 0 0 0 1 1 1 0 1 1 1 1 1 Deletion Peak 23 11q12.3 chr11:40133134-79116454(probes 998710:1015399) chr11:62200370-62325271(probes 1007606:1007665) chr11:62249661-62254703(probes 1007636:1007637) 0.070612 0.11332 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 0 1 0 1 1 1 0 1 0 1 0 0 1 1 1 1 1 0 1 1 1 0 0 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 0 1 0 1 1 0 1 1 0 1 1 1 0 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 Deletion Peak 24 11q24.3 chr11:123520153-135006516(probes 1043482:1050646) chr11:125538114-135006516(probes 1044842:1050646) chr11:91482435-135006516(probes 1022784:1050646) 6.5401e-15 6.5401e-15 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 0 1 0 1 1 1 1 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 Deletion Peak 25 13q34 chr13:114202593-114304134(probes 1180231:1180296) chr13:114236241-114301161(probes 1180258:1180293) chr13:114263720-114284773(probes 1180275:1180284) 0.082827 0.082827 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 0 1 0 0 1 1 0 1 1 1 0 1 1 0 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 0 1 0 1 0 1 1 1 1 1 1 0 0 0 1 1 0 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 0 1 1 1 1 0 0 1 Deletion Peak 26 16q23.1 chr16:73174324-82663437(probes 1303468:1310620) chr16:78015651-78104020(probes 1306733:1306750) chr16:72940047-90354753(probes 1303330:1314277) 4.0904e-05 0.023574 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 1 1 1 1 1 1 1 0 1 0 0 1 0 0 1 0 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 1 1 1 0 1 0 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 1 1 1 0 1 1 0 1 1 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 Deletion Peak 27 16q23.3 chr16:74323940-90354753(probes 1304314:1314277) chr16:83979992-84164575(probes 1311831:1311868) chr16:72940047-90354753(probes 1303330:1314277) 0.00015997 0.0066419 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 1 1 1 1 1 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 1 1 1 1 0 0 1 0 0 0 1 1 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 1 1 1 0 1 1 0 1 1 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 Deletion Peak 28 18p11.32 chr18:1-893521(probes 1350991:1351033) chr18:1-330689(probes 1350991:1350991) chr18:1-2952641(probes 1350991:1351939) 0.00046313 0.00046313 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 1 1 1 1 0 1 0 0 0 1 1 1 1 0 0 1 1 1 0 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 1 0 1 Deletion Peak 29 18q22.3 chr18:61814593-78077248(probes 1386004:1393398) chr18:72254868-72266469(probes 1390286:1390290) chr18:56433315-78077248(probes 1382370:1393398) 0.00010442 0.00010442 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 0 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 1 1 1 1 1 0 1 Deletion Peak 30 19q13.33 chr19:48083041-48217922(probes 1412741:1412808) chr19:48104223-48214989(probes 1412756:1412807) chr19:48150708-48154302(probes 1412782:1412783) 0.0043433 0.032604 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 1 1 1 0 1 1 1 0 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 Deletion Peak 31 19q13.42 chr19:42754638-59128983(probes 1410634:1417097) chr19:55000922-55029446(probes 1415194:1415204) chr19:51837214-59128983(probes 1414214:1417097) 0.0046229 0.082827 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 1 1 1 0 1 1 1 0 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 Deletion Peak 32 20p12.1 chr20:1-16555385(probes 1417098:1427266) chr20:13965126-16036135(probes 1425674:1426789) chr20:15467744-15471214(probes 1426232:1426233) 0.14117 0.13915 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 Deletion Peak 33 Xp21.1 chrX:32117084-32611359(probes 1504247:1504552) chrX:30870233-34033668(probes 1503587:1504807) chrX:32057877-32062998(probes 1504198:1504199) 0.026863 0.028318 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 Deletion Peak 34 Xq27.3 chrX:106870804-155270560(probes 1532086:1553768) chrX:142955907-142970575(probes 1548637:1548638) chrX:142954985-142971816(probes 1548634:1548640) 0.08422 0.08422 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 Amplification Peak 1 - CN values 1q21.2 chr1:75763492-206173924(probes 40783:101896) chr1:150168643-150532791(probes 67659:67723) chr1:120527362-154458931(probes 67534:69631) 0.088103 0.088103 Actual Copy Change Given 0.29421 0.18985 -0.0028235 0.11433 0.030252 1.4393 0.0053193 -0.0053992 0.32235 0.43019 0.050791 0.087824 0.23303 0.6081 0.23457 1.0791 0.2597 0.094346 0.25339 0.76102 -0.0072122 0.23845 0.14756 -0.05866 0.043397 0.0078617 0.061508 0.11038 0.09972 0.45479 0.61643 0.010146 0.13228 -0.0073339 0.039371 0.025952 0.19314 1.1307 -0.0066432 0.013632 0.22924 0.0011414 0.56039 0.031014 0.020165 0.22762 0.017192 0.040751 0.46793 0.33572 0.098997 0.97451 0.0084743 0.04883 -0.0099193 0.16365 0.012934 -0.010646 0 0 0.17545 -0.0069195 0.599 0.1613 -0.048478 0.27499 0.047576 0.63406 0.040416 0.023145 0.84816 -0.025072 0.029415 0.11814 0.77579 0.037782 0.0027086 0.046213 0.019643 0.8085 -0.0063668 -0.005261 0.17739 0 -0.065179 0.021259 -0.026167 -0.014469 0.49024 0.057083 0.38634 0.73 0.046559 0.66309 0.32914 0.039054 0.84422 0.82686 0.070355 0.085654 0.013535 -0.00065782 0.10478 0.011539 0.050961 0.20855 0.0016642 0.016425 0.35545 0.020763 0.0074281 0.1556 0.00041593 0.405 0.63724 0.51928 0.41362 0 -0.010168 0.83325 0.15812 0.37968 0.0016642 1.5789 0.24575 0.00097064 0.00269 0.69989 0.0056919 0.012163 -0.022332 0.20259 0.6148 -0.0008316 -0.0024276 0.54347 -0.10592 0.027864 0.41964 0.53942 0.045849 0.04259 0.12417 0.19187 0.32672 0.0025485 -0.0081414 -0.022332 0.25787 0.51438 Amplification Peak 2 - CN values 2p24.1 chr2:1-51779748(probes 128604:159007) chr2:20421009-20810902(probes 141452:141688) chr2:1-50423606(probes 128604:158364) 0.0050216 0.0050216 Actual Copy Change Given 0.0015255 0.0036551 0 0.12196 0.43321 0.3174 0.0036521 -0.36249 0.4236 0.45683 1.1682 -0.092345 0.064797 0.038489 0.16445 0.53837 0.0030918 1.6636 -0.005814 0.2003 0.004205 0 0.50377 0.14266 0.036088 -0.025658 0.0083351 0.1646 -0.0099461 0.19352 0.76437 0.14289 0.13003 0.70532 0 0.0091705 0.17468 0.028763 0.72716 0.010285 0.23512 0 0.10083 0.045282 0.04723 0.25043 0.022932 0.084354 -0.015604 -0.027261 0.10316 0.057012 -0.0013858 0.077862 0.46968 -0.014228 0.011121 0.0114 -0.0074544 0.27159 0.069239 0.0025509 0 0.081466 0.76945 0.28961 0.51403 0.67938 0.019731 1.2322 0.26216 0.058224 0.0061708 0.79588 0.84238 0.031859 0.0064801 0.0084743 0.0070826 0.77887 0.0076392 -0.0038779 0.16595 0.00458 0.047836 0.97523 0.19832 1.3092 0.51295 0.23365 0.43513 0.0081959 0 0.70288 -0.27774 0.70195 0.6605 0.0080567 -0.048507 0.004719 0.012795 0.0077783 0.062631 0.0038854 0.05523 -0.089567 0.012795 0.10278 0.13192 -0.00041585 0.12672 0.08998 0.1673 0.41362 0 0.0091705 0.0079175 0.0032861 0.0078434 -0.0015034 -0.0036011 0.42822 0.0051554 0.77401 0.061937 0.14444 0.0056919 0.38039 0.0088609 0.14585 0.58775 0.062651 0.20993 0.012795 0.065009 0.11772 0.20916 0.033213 0.63847 0.52503 0.043299 0.040609 0 0.65952 0.008169 -0.13845 0.0016642 0.0016642 0.09101 0 Amplification Peak 3 - CN values 3p13 chr3:47912704-109363046(probes 286181:318389) chr3:71068104-71145115(probes 299905:299961) chr3:71068104-71149426(probes 299905:299964) 0.23596 0.23596 Actual Copy Change Given 0.015028 0 -0.0038779 0.13583 0.46632 0.00055459 0.26111 0.020294 0.030126 -0.050776 0.66448 -0.083731 0 0.0088069 0.047694 0.57113 0.011579 0.7087 0.022725 -0.091287 -0.00015513 0.010427 0.050984 -0.26949 -0.37909 0.015866 0.0068044 -0.27858 0.23272 0.72282 0.68738 -0.30698 0.1784 0.32093 -0.36352 -0.5011 -0.050506 1.3309 0.69895 0.027778 0.56232 0.0028066 -0.03145 0.03637 0.012339 -0.34194 -0.45934 0.052383 0 -0.0059522 -0.16752 0.084284 -0.4086 -0.11913 0.0201 0.0049969 -0.39252 0.21576 0.20396 -0.18181 0.053147 0.14251 0.027076 -0.12027 0.45 0.022024 0.049824 -0.051737 0.0018083 0.024268 0.88606 0 -0.01354 0.20832 -0.019875 0.077286 0.0070165 0.079735 0.014888 -0.010155 0.012934 -0.0062286 -0.076812 0.0052749 -0.07881 0.164 0.0029133 0.02511 0.027246 0.14502 0.011121 0.008892 0.033883 0.45224 -0.2818 -0.12148 0.88073 -0.2901 -0.00016844 0.01447 -0.20037 -0.33306 0.047649 0.021463 0.25105 0 -0.40019 -0.18358 1.0436 -0.027611 0.69862 0.14294 0.0051359 0.00097064 0.21683 0.010842 -0.43105 -0.43951 0.10207 0.011917 -0.31038 -0.0030475 0.014051 0.77695 -0.080275 -0.0008316 0.024408 -0.026851 -0.27224 0.81561 0.06462 0.011539 0.24716 0.010146 0.00062091 -0.025756 -0.24326 -0.45772 0.0082661 0.3928 0.081899 0.068808 -0.012438 -0.27575 0.0114 0.0057435 0.0027033 -0.09318 -0.12329 0.097129 Amplification Peak 4 - CN values 3q27.3 chr3:164340364-194094109(probes 348618:364409) chr3:186610140-186619722(probes 359632:359641) chr3:156115457-197508419(probes 344416:365355) 7.0307e-05 7.0307e-05 Actual Copy Change Given 0.015028 0 -0.0038779 0.13583 0.040693 0.00055459 0.078917 0.020294 0.032072 0.34027 -0.549 -0.085031 -0.0018014 0.10614 0.14178 0.57113 0.011579 0.68254 0.80558 -0.091287 -0.00015513 0.0047216 0.040976 0.13791 -0.37909 0.42601 -0.005814 -0.27858 0.2196 0.16971 0.68738 0.35414 0.18192 0.32447 0.044007 -0.5011 0.43058 0.0091705 0.050392 0.016524 0.21169 0.0028066 0.51135 0.03637 0.012339 -0.34194 -0.45934 0.052383 -0.013798 0.0030522 1.682 -0.48023 -0.4086 -0.11913 0.017333 -0.0088819 0.34242 0.21576 0.0086714 0.37199 0.061094 0.14251 0.027076 -0.09589 0.61625 0.027076 0.80247 -0.049846 0.014558 0.024268 1.7594 0 -0.01354 0.20832 3.6428 0.51194 0.45454 0.045102 0.00597 -0.00027724 0.012934 -0.0062286 -0.076145 0.0052749 -0.07881 0.38783 0.0029133 0.02511 0.020039 0.14502 0.011121 -0.0088623 0.014888 0.67345 -0.29011 -0.038034 0.99744 0.017124 -0.002352 -0.26745 -0.20037 0.014749 0.058652 0.018803 0.2509 -0.00013862 1.4895 -0.18358 -0.19112 0.40094 0.49653 0.14294 0.0051359 0.00097064 0.35235 0.0062481 1.8952 0.0024531 0.10207 0.016364 -0.31401 0.82764 0.014051 0.77695 -0.080275 -0.0008316 0.024408 -0.026851 -0.27224 0.20679 0.068808 0.0099674 -0.23603 0.0084884 0.00062091 0.44782 0.22407 -0.45772 0.011679 0.76312 0.087824 0.068808 -0.0042929 -0.27575 -0.0012825 0.0057435 0.0066653 0.083198 -0.0038779 0.25965 Amplification Peak 5 - CN values 4q12 chr4:55115758-57352301(probes 394802:396365) chr4:55146770-56252823(probes 394863:395775) chr4:48068827-67337096(probes 393366:401840) 4.2593e-09 4.2593e-09 Actual Copy Change Given -0.27891 -0.011835 0.059366 -0.5018 -0.39212 0.34746 0.68688 0.99841 -0.32408 -0.051856 -0.53748 -0.11077 -0.23887 0.015168 0.64928 -0.023429 -0.23456 -0.060465 0.00013863 1.329 0.0062315 0.25028 -0.4703 -0.081871 -0.37487 -0.45392 -0.0020784 -0.3609 -0.45211 -0.30431 -0.013953 -0.29343 -0.34263 -0.11404 -0.37098 0.54771 -0.15903 -0.56127 -0.074945 -0.53632 1.8899 -0.011687 -0.037405 -0.12174 -0.33418 -0.34044 -0.46201 0.062508 -0.51887 -0.010508 -0.15784 -0.44334 2.0236 -0.0028213 -0.54459 1.1412 0.32447 -0.40152 -0.263 -0.20369 -0.36703 -0.0084385 -0.58588 -0.3162 -0.011749 -0.23374 -0.44694 -0.082817 -0.53798 2.3772 -0.084528 -0.18358 -0.011473 -0.42517 -0.01409 -0.43268 -0.22231 -0.49638 -0.54199 -0.039412 0.2708 0.0036076 -0.34615 -0.090361 -0.018902 0.40811 -0.52159 -0.5095 2.8058 -0.059807 0.045849 0.35932 -0.58628 -0.017254 -0.31558 -0.53804 -0.0008054 -0.26793 -0.0034925 -0.23702 -0.20413 -0.33564 -0.17018 -0.44878 -0.39719 -0.15114 -0.39297 -0.18422 -0.17639 -0.094856 -0.40105 -0.21442 -0.21453 -0.0040162 -0.35715 -0.0041546 -0.41344 -0.44608 -0.31266 -0.43671 0.015343 0.0079175 -0.18735 -0.014276 -0.099604 -0.068127 -0.56246 2.7493 -0.26637 -0.42934 -0.55757 0.20503 3.6569 0.018243 0 -0.034768 -0.25346 0.040979 -0.018628 -0.50795 -0.025796 -0.36499 -0.0023553 -0.26777 0.020483 -0.15536 -0.24156 -0.13135 -0.03095 0.28501 Amplification Peak 6 - CN values 7p22.1 chr7:1-10243693(probes 663553:667248) chr7:5564809-6569889(probes 665396:665720) chr7:1-10243861(probes 663553:667250) 0.019484 0.019484 Actual Copy Change Given 0.31553 0.47598 0.19497 0.46658 0.45704 -0.36793 0.30415 1.4574 0.39637 -0.037218 0.62707 0.29565 0.15681 0.40719 0.30473 1.099 0.25063 1.4709 0.38304 0.4628 -0.00015513 0.23489 0.68403 0.77522 0.46194 0.78234 0.11169 0.69518 0.13095 0.37153 1.3893 0.18753 0.48182 0.26357 0.42587 0.54101 0.51699 1.1972 1.3302 0.54206 1.5258 0.54422 0.12147 0.077718 0.49765 0.21063 0.12651 0.41814 0.99156 0.67345 0.10468 0.088042 0.47118 0.25574 0.031333 0.41011 0.44799 0.1854 0.17784 0.91561 0.20519 0.29437 0.034959 1.0062 0.45683 0.18495 -0.45135 0.59436 0.45218 0.019553 -0.059 0.46724 0.48148 0.21899 0.80228 0.53134 -0.070825 0.085654 0.016006 0.85997 0.013749 0.57202 0.67363 0.098997 0.4257 0.47358 1.0382 0.95652 0.52073 0.46536 1.0477 0.37495 0.0040243 3.0396 0.36215 0.76466 0.68648 0.61262 0.49939 0.013325 0.58801 0.33011 0.26279 0.48785 0.0040243 0.69316 0.5433 0.23024 0.37232 0.7704 0.18203 0.13576 0.24062 0.87807 0.35039 0.56774 0.039337 0.4366 0.63874 0.6008 0.353 0.42217 0.082188 -0.051316 0.1658 0.094201 2.4984 1.1604 0.31498 0.76168 0.36035 0.61118 1.1344 0.54647 0.1451 0.96391 0.18026 0.51553 -0.014366 0.11609 0.17884 0.047552 0.2697 0.21632 0.3738 0.31809 0.5003 0.27001 0.44054 1.1749 Amplification Peak 7 - CN values 7q11.22 chr7:63487324-108656546(probes 696845:718461) chr7:71513405-72359694(probes 700572:700810) chr7:65555055-74507701(probes 697332:701339) 0.035574 0.035574 Actual Copy Change Given 0.31553 0.65535 0.18586 0.32286 0.41492 0.044795 1.0085 1.1216 1.0089 1.3168 0.62707 0.3139 0.65222 0.40719 0.30473 0.58184 0.25063 1.4709 0.55744 -0.024798 -0.0045177 0.23489 0.68403 0.74166 0.49251 0.68163 0.11169 0.75375 0.13095 0.2763 0.66771 0.18753 0.48182 -0.13781 0.42587 1.5399 0.51699 0.060222 0.60473 0.50325 1.1731 0.54422 0.10623 0.077718 0.49765 0.21063 0.4391 0.41814 0.9892 0.68515 0.11026 0.069367 0.45564 0.25574 0.55288 0.39562 0.44799 0.028903 0.18662 0.89026 2.9171 0.29437 0.04954 1.1029 0.47896 0.18495 -0.42036 0.61514 0.46069 0.019553 -0.059 0.46724 0.48148 0.21899 0.80228 0.54594 -0.070825 0.068235 0.015447 0.83701 0.36887 0.57202 0.71377 0.098997 -0.0079513 0.47358 1.0553 0.95652 0.51055 0.46536 0.46141 0.37792 0.0040243 -0.016017 0.35349 0.76466 -0.050955 0.61262 0.49939 0.011346 0.58801 0.33011 0.26279 0.48785 0 0.69316 1.1199 0.23024 0.37232 0.3832 0.22433 0.13576 0.24062 0.74389 0.35039 0.0024969 0.49649 0.4366 0.63874 0.6008 0.32931 0.42688 0.080745 -0.034086 1.4815 0.094201 -0.5425 0.53546 0.31498 0.76168 0.81238 -0.077212 0.23944 0.45216 0.13753 0.61335 0.18026 0.51553 -0.014366 0.14563 0.17884 0.047552 0.26809 0.20519 0.55744 0.31809 0.48795 0.27001 0.43648 0.43243 Amplification Peak 8 - CN values 8q11.23 chr8:54495678-57712567(probes 772747:774614) chr8:55272833-55817832(probes 773170:773526) chr8:52594322-99945446(probes 771665:798775) 8.4265e-05 8.4265e-05 Actual Copy Change Given 0.3129 0.63189 0.18692 0.45666 0.48089 0.85145 0.21074 0.38607 0.3785 1.1738 0.63783 0.031295 0.23386 1.1029 0.16055 0.013492 0.21166 0.66383 0 1.2675 0.77654 0.24426 0 0.11155 1.227 0.20789 1.0934 2.2715 1.0407 0.19542 0.46947 -0.0095237 0 0.30186 0.36084 0.53179 0.46127 1.0529 -0.55757 0.50099 0.24973 0.57273 0.55542 0.09188 2.857 1.1569 0.48531 0.033408 0.98094 0.34145 0.38292 0.61598 0.45717 0.24871 0.653 0.39081 0.13598 0.50533 0.1136 0.89544 0.19406 0.14503 0.026654 0.58414 -0.04211 0.29056 0.059576 0.56951 0.020711 0.00097064 -0.082801 0.049022 0.069812 -0.40871 0.82294 0.40777 0.0068774 0.54189 0.58046 0.54735 0.71374 0.27837 1.2542 0.095594 0.28135 0.64469 0.51281 0.5142 0.53482 0.55638 0.4553 0.43092 0.032422 1.9573 0.90936 0.9382 0.63487 0.34039 0.32041 0.26836 0.23659 0.040795 0.24451 0.47787 -0.089302 0.92969 0.40777 0.23179 0.66106 0.47907 0.1723 0.38682 0.12859 0.89467 0.36002 2.0948 0.46092 0.43305 0.32261 1.4765 0.33318 0.84476 0.19421 -0.016429 0.069812 0.25777 0.52083 3.4505 0.29351 0.1923 0.31546 0.58471 0.21776 0.53731 0.069738 1.2239 0.57826 0.52601 0.7731 -0.48722 -0.50588 0.13984 0.26592 1.6179 0.34778 0.15776 0.23992 0.13524 0.42267 0.45173 Amplification Peak 9 - CN values 8q23.3 chr8:70207598-146364022(probes 781972:825661) chr8:114399613-114413369(probes 806508:806512) chr8:114399613-114414582(probes 806508:806515) 0.13696 0.13696 Actual Copy Change Given 0.29247 0.63189 0.18692 0.54189 0.45603 0.15084 0.21074 0.43513 0.065873 1.176 -0.0085045 0.031295 0.23426 1.0631 0.16055 -0.018902 0.21166 0.66217 -0.0041546 1.2675 0.77654 0.86289 0 0.18041 0.40561 0.21085 1.0999 0.056655 0.13317 0.19893 0.46947 0.032845 0 0.30186 0.56721 0.53179 0.28279 1.107 0.17979 1.0226 1.3803 0.58708 -0.036997 0.09188 -0.01151 1.2221 0.48569 0.033408 0.97337 0.32494 0.38836 0.61598 0.45717 0.24871 0.653 0.39081 0.13598 0.50533 0.087542 0.88126 0.19406 0.14503 0.026654 0.61281 -0.037626 0.29056 0.075271 0.6126 0.017275 0 -0.098023 0.11917 0.061013 -0.40871 3.6569 0.40777 0.0068774 0.035068 0.57952 -0.018628 0.68384 0.27837 -0.33871 0.095594 0.28135 0.64469 0.52762 0.5142 0.031412 0.55638 0.4553 0.40656 0.032422 1.2349 0.90936 1.3203 0.79303 0.2442 0.32041 0.26836 0.23659 0.013634 0.24451 0 -0.089302 0.92909 0.40711 0.23179 0.62848 0.47907 0.18529 0.38682 0.12859 0.8349 0.36002 -0.56585 0.0098669 0.43305 0.32261 0.38313 0.33318 -0.011198 0.19421 -0.016429 0.069812 0.25777 0 1.5086 0.29351 0.19763 0.42335 0.56734 0.21776 0.53731 0.069738 1.2317 0.61045 0.51884 0.75579 -0.49089 -0.50588 -0.17997 0.2448 0.68248 0.36641 0.15146 0.23992 0.13036 0.42267 0.45173 Amplification Peak 10 - CN values 12p13.33 chr12:1-11799340(probes 1050647:1056343) chr12:980180-1037228(probes 1050678:1050708) chr12:1-39241239(probes 1050647:1070101) 3.5918e-21 4.3088e-16 Actual Copy Change Given 0.57648 2.2625 0.17603 1.4148 0.44267 -0.0027707 0.28379 1.3914 1.3885 2.6427 2.2001 0.91561 1.0851 2.2307 1.6291 2.9968 1.1796 2.3202 0.98958 2.5021 2.1307 2.5049 1.8766 1.6359 2.0685 1.9326 1.7143 2.9041 2.7499 1.8541 2.2278 0.97647 1.8651 3.3476 2.0699 1.078 1.5293 1.6989 2.7443 1.9171 3.5947 1.8999 1.9624 0.9361 1.5999 2.9365 0.47898 1.7987 2.125 0.35594 0.16535 1.6044 0.8572 0.11814 1.4996 0.76025 2.3299 1.7534 1.2814 1.9806 2.7021 0.21361 2.2758 1.9093 1.6987 2.5925 2.678 3.6569 2.4496 1.9417 3.0322 1.2461 1.8365 2.3869 3.6569 1.7552 0.67874 3.1134 2.9345 3.6569 0.33119 0.27537 0.67864 0.048972 0.25152 1.943 2.7568 2.1977 0.019339 0.64194 0.84751 1.4276 2.1127 2.4543 2.5884 0.65977 3.6569 0.85739 0.60969 0.80422 0.84081 1.402 0.18298 1.5794 1.8158 1.9158 1.4853 0.40827 0.49199 1.5298 2.8096 2.5989 1.2118 2.9888 2.4254 1.9496 1.7657 0.84685 0.93192 2.7347 0.92209 2.0144 1.2712 2.3632 0.39745 0.5266 3.3114 3.2209 0.80675 3.1289 2.4525 1.1556 3.6569 0.50064 0.064866 1.5379 2.198 2.2046 1.4629 1.885 1.7976 0.96391 0.42677 2.9611 0.98369 0.098469 0.96165 0.10687 0.6491 1.2432 Amplification Peak 11 - CN values 12p12.1 chr12:21545357-28751389(probes 1062406:1067032) chr12:25402469-25530012(probes 1064872:1064960) chr12:1-39241239(probes 1050647:1070101) 1.4729e-22 1.3574e-08 Actual Copy Change Given 0.57648 2.1112 0.17603 0.40994 0.44267 3.6569 0.28379 1.3914 1.3885 2.6949 2.2028 0.91561 1.0851 2.0823 1.6291 2.9968 1.1796 2.3202 0.98958 2.5021 2.1307 1.4219 1.8417 1.6359 2.066 1.9326 1.7143 2.4205 2.6699 1.4224 2.2088 0.97647 1.8651 3.3699 2.0699 1.078 1.4943 1.6586 2.6618 1.9171 3.3846 1.8999 0.55047 0.9361 1.5758 2.9833 0.47898 1.7987 1.8759 0.32656 0.16535 1.6044 0.8572 0.11814 1.5456 0.76025 2.5034 1.7525 3.6569 2.3283 2.6431 0.21361 2.2259 1.9093 1.6987 2.6476 2.8726 3.6569 2.3942 1.9327 3.0922 1.2461 1.8061 2.3869 2.2746 1.7827 0.67874 2.8379 2.9647 3.6295 0.33119 0.27537 0.67864 0.048972 0.25152 1.943 2.8042 3.6569 3.6569 0.43665 0.84751 1.4129 2.1127 2.4543 2.5266 0.65977 3.6569 0.85739 0.60969 3.6569 0.84081 1.402 0.18298 1.5794 1.8637 1.9158 1.3909 0.40827 0.96308 1.5298 2.8096 2.6078 2.7299 3.5308 2.4254 1.9496 3.6569 0.81455 0.93192 2.7623 0.92209 2.0019 1.2551 2.3632 3.6569 0.5266 3.3893 2.7999 0.80675 3.0323 2.4688 1.1584 3.6066 0.50064 0.064866 1.5379 2.198 2.1967 1.4237 2.4831 1.7732 0.96391 0.42677 0.65957 3.6569 0.098469 0.96165 0.10687 0.6491 1.3187 Amplification Peak 12 - CN values 12p11.21 chr12:33181227-33200707(probes 1069932:1069941) chr12:33184591-33200496(probes 1069935:1069940) chr12:1-39241239(probes 1050647:1070101) 1.3385e-16 0.034061 Actual Copy Change Given 0.57648 2.1112 0.17603 0.40994 0.44267 0.7134 0.28379 1.3914 1.3885 2.0183 2.2028 0.91561 1.0851 2.0823 1.6291 2.9968 1.1796 2.3202 1.0115 2.5021 2.1307 1.4219 1.8417 1.6359 2.066 1.9326 1.7143 2.4205 2.6699 1.4191 2.2088 0.33496 1.8651 3.3699 2.0699 1.078 1.4943 1.6586 2.6618 1.9171 3.3846 1.8999 1.0643 0.9361 1.5758 2.9833 0.47898 1.7987 1.8759 0.32656 0.16535 1.6044 0.8572 0.11814 3.6569 0.3827 0.78273 1.7525 0.97317 2.3283 3.6569 0.21361 2.2259 1.9093 1.6987 0.7637 3.6569 3.6569 2.3942 1.8936 3.0922 1.2461 1.8061 2.3869 2.2746 1.7827 0.67874 2.8379 2.9647 3.6029 0.33119 0.27537 0.67864 0.048972 0.25152 1.943 2.769 3.6569 -0.0023789 0.43665 0.84751 1.4129 2.1127 2.4543 2.5266 0.65977 3.6569 0.85739 0.60969 1.2741 0.84081 0.22099 0.18298 1.5794 1.8637 1.9158 1.3909 0.40827 0.04155 1.5298 2.8096 1.5379 0.69447 0.48483 2.4254 1.9496 -0.38862 0.81455 0.93192 2.7623 0.92209 2.0019 1.2551 2.3632 1.1501 0.5266 3.4035 3.6569 0.80675 3.0667 2.3944 1.193 3.6066 0.50064 0.064866 1.5379 2.198 2.1967 1.4665 2.4831 1.7732 0.96391 0.24669 0.65957 3.0427 0.098469 0.96165 0.10687 0.6491 1.3187 Amplification Peak 13 - CN values 12q15 chr12:69164647-72373494(probes 1087007:1089028) chr12:70206153-70234303(probes 1087723:1087736) chr12:68959388-72522241(probes 1086898:1089109) 0.00041421 0.00041421 Actual Copy Change Given 0.0029133 0.30138 0.17603 0.40994 0.019025 0.491 0.28379 -0.0048461 0.64735 0.69559 0.050324 0.080024 0.077574 1.0504 0.1434 0.55904 0.10998 0.69989 0.29979 0 0.74396 0.22839 0.13273 0.31001 1.0652 0.38949 0.0029133 0.20847 0.2087 0.30154 0.75509 0.33496 0.092394 0.64689 0.37298 0.029466 0.17287 3.6569 3.6569 0.00066376 0.23558 0.57331 0.55188 -0.0832 0.38299 0.19868 0.47898 3.6569 0.4599 0.32656 0.16535 0.053518 0.0075 0.11814 0.51582 -0.012851 0.017544 0.061079 0.54136 0.3537 0.16039 0.21361 0.010982 0.2708 1.7383 0.27742 0.044857 0.61605 0.49816 0.027778 0.78511 0.14147 0.0054139 0.20091 0.77714 0.030169 0.2297 0.039829 -0.0011087 0.79995 0.33119 0.26966 0.67864 0.048972 0.25152 0.65057 0.48148 0.44833 0.0020569 0.43665 -0.0077482 -0.011887 0.0040243 0.53801 0.32414 0.20121 0.75281 0.27001 0.24401 0.23798 0.0017776 0.22099 0.18298 0.44816 0.077862 0.04883 -0.0078863 0.011958 0.13347 0.25918 0.69694 0.18751 0.07096 0.39911 0.64111 -0.0030475 0 -0.008206 0.30066 0.40603 0.30441 0.39479 0 0.78176 0.11301 -0.0070576 -0.0048132 1.416 0.0036076 0.18162 0.046559 0.041034 0.21806 0.50064 0.064866 0.5856 0.41245 0.46928 -0.012024 0.13643 0.097397 0.06208 0.2365 3.6569 3.6569 0.098469 -0.018078 0.10687 0.2236 0.65204 Amplification Peak 14 - CN values 16q21 chr16:31845698-71612345(probes 1287581:1302693) chr16:64227095-68417098(probes 1298906:1301403) chr16:55476495-70608986(probes 1293539:1302318) 0.035574 0.035574 Actual Copy Change Given -0.010922 -0.060345 -0.005261 0.10025 0.022807 -0.33722 -0.30071 -0.37966 0.33117 1.8947 -0.40312 -0.11155 -0.067458 -0.10083 -0.086916 -0.011611 -0.1409 -0.015191 0.013213 -0.10224 0.72298 0.22145 0.068665 -0.075745 0.030451 -0.35022 -0.10026 0.64066 0.02511 0.30969 0.8058 -0.0019399 -0.051586 0.25751 -0.041431 -0.050911 -0.15592 0.0091705 0.67511 -0.017391 -0.35025 -0.0017693 0.043612 -0.0050043 -0.35581 2.0567 -0.47548 -0.018628 -0.54653 0.0074683 -0.0031859 0.045779 -0.44512 -0.025209 0.0015629 -0.3943 -0.38078 -0.36986 -0.25926 -0.21293 -0.26733 -0.014366 -0.55877 -0.2732 1.612 0.27159 -0.33641 -0.059285 0.034908 0.025952 -0.075078 -0.11535 0.031295 -0.39619 -0.035721 -0.43962 0.017617 -0.0092666 -0.27452 -0.046177 -0.3543 -0.022606 -0.39997 -0.0063668 -0.085324 -0.012438 -0.049695 -0.036946 -0.0192 -0.18521 -0.0023553 -0.017529 0.032242 1.3753 0.25324 0.022304 -0.040538 -0.047531 -0.01852 0.0076156 -0.21317 -0.084793 -0.081339 -0.013402 0.051245 -0.089567 -0.40694 0 -0.20272 -0.2102 0.1944 -0.25359 -0.014916 -0.038306 0.21024 0.0070826 -0.41969 -0.44246 -0.034976 -0.060942 -0.02384 -0.46525 -0.018628 0.81337 -0.098418 0.0020805 -0.58451 -0.023155 -0.31249 -0.33728 0.039054 -0.31225 0.13066 -0.039258 -0.0093386 -0.095485 0.20564 0 0.015172 -0.50297 -0.52563 -0.3819 -0.017116 1.0837 -0.025483 -0.15754 -0.08413 0.0076392 0 -0.24411 Amplification Peak 15 - CN values 20q11.21 chr20:26197900-29850834(probes 1433813:1433820) chr20:29843974-29850585(probes 1433814:1433819) chr20:26197900-30856743(probes 1433813:1434274) 8.4265e-05 8.4265e-05 Actual Copy Change Given -0.0059522 -0.056173 0.0063871 -0.2005 0.03476 0.075559 0.012142 0 -0.028421 0.50394 0.031228 0.059937 0.073977 -0.50152 -0.018353 -0.0094046 -0.044783 0.72641 0.02525 0.10074 2.8487 0.24063 0.039761 0.17845 0.037217 0.0022193 0.014888 0.034254 0.0040243 0.31624 0.79762 -0.016979 0.093185 0.69142 0.045991 0 0.12476 0.032422 0.74233 0 0.023217 -0.02887 0.035612 -0.13355 0.1511 0.15009 0.014397 0.054091 0.46041 0.34453 -0.0008316 0.042237 0 0.046835 0.50121 0.016286 0.004719 0.055943 0.24761 0.99426 0.25058 0.56472 -0.57538 0.12388 0.33545 0.26844 0.030029 0.65018 0.030719 0.020704 0.12667 0.00097064 0.028763 0.21729 3.1497 0 1.8612 0.91764 0.029044 0.76083 0.0055529 -0.010784 0.26028 -0.0027707 -0.034376 0.18919 0.25168 -0.03245 -0.39488 0.24622 -0.014503 -0.016562 0.036935 0.6805 0.29056 1.5123 0.33162 -0.033132 -0.011365 -0.007472 -0.20523 0.0011093 -0.01088 0.0069435 0.062223 0.16505 1.5335 0.00083195 0.13524 0.011261 0.39649 -0.22578 -0.0083005 -0.0088526 -0.017391 0.00091719 -0.032659 0.016102 -0.021034 -0.041491 -0.020412 -0.030813 -0.011335 0.80305 0.0467 0.0090312 0.0055529 -0.0045044 -0.014916 -0.29775 -0.10211 -0.13355 0.19817 2.78 0.063864 0.23969 0.19954 -0.027166 0.0091705 0.24887 0.18465 -0.037626 0.15278 0.17357 -0.023292 0.0037981 -0.011335 0.010006 0.0024969 -0.16115 Amplification Peak 16 - CN values 22q11.21 chr22:18613558-22141824(probes 1475270:1475295) chr22:18613738-22141242(probes 1475271:1475294) chr22:18295131-29082627(probes 1475027:1478748) 5.309e-06 5.309e-06 Actual Copy Change Given -0.024524 0.24653 0.0079175 0.37411 0.42613 -0.081339 -0.0045253 0.31723 0.60639 1.2416 -0.37036 -0.1109 -0.11535 -0.10657 -0.057116 -0.028628 -0.03609 -0.019863 -0.050776 0.29088 -0.047547 -0.39246 -0.47564 0.071248 -0.020001 -0.1712 -0.11743 -0.34504 -0.092345 -0.31774 1.7764 0.029466 0.2771 -0.53185 0.012237 1.0691 -0.14412 -0.022606 0 -0.55166 -0.33127 -0.042621 0.050197 0.053806 -0.035076 0.11067 -0.48581 -0.4911 0.40978 0.33934 0.33157 -0.026098 -0.024935 0.2133 -0.047765 -0.0044312 0.46092 -0.014228 0.12388 -0.17537 0 -0.0024938 -0.57615 -0.015741 0.54665 -0.25926 0.021043 -0.068143 -0.53087 0.025952 -0.05752 -0.16115 0.057226 -0.40517 0.41061 -0.20523 0.0049309 -0.51107 -0.56533 0.56304 0.099433 0.27411 0.20473 0.0076392 0.046842 0.96165 0.41204 0.38485 0.4319 0.39994 0.37611 2.3979 -0.60303 2.6748 0.36182 0.28232 -0.076502 0.2287 0.057052 -0.034495 -0.0018014 0.061651 0.3592 0.42856 0.018663 0.027357 0.024127 -0.013815 0.26545 0.21392 -0.14666 -0.2211 0.20671 0.39181 0.28897 -0.0038779 0.44003 -0.43922 0.26584 0.88517 -0.046583 0.35267 -0.032178 -0.092874 0.23783 0.00027728 -0.01409 1.3645 -0.02151 -0.40711 0.45156 0.26514 0.11081 -0.066386 0.056723 1.1229 0.22099 -0.022523 0.039478 -0.53571 0.52941 0.70101 -0.023023 0.14216 0.53221 -0.0016114 -0.029311 0.0056919 0.42183 0.49666 Deletion Peak 1 - CN values 1p36.31 chr1:1-48649489(probes 1:23925) chr1:1-8581014(probes 1:3221) chr1:1-19943822(probes 1:9028) 0.00046313 0.0009637 Actual Copy Change Given -0.31849 -0.043737 -0.0028235 -0.24576 -0.40422 -0.04529 -0.29138 -0.0053992 -0.024043 0.93997 0.023359 0.087824 0.1079 0.42634 0.23457 -0.064911 -0.098959 -0.010508 0.29692 -0.092081 -0.039573 -1.0639 0.074072 0.15517 0.012761 0.35186 0.10468 0.10004 0.46351 0.25636 -0.011611 0.24873 0.16805 -0.015879 0.023566 0.93773 -0.16241 0.02539 -0.012576 -0.55266 -0.33658 0.0011414 0.041099 0.010048 -0.36604 -0.39486 0.017192 0.010842 0.79065 -0.0081624 -0.20112 0.049185 0.0084743 0.04883 -0.41605 0.16365 -0.0081624 0.43496 0.20687 0 0.12874 -0.0076259 0.018803 0.1613 -0.048478 -0.24946 -0.37118 -0.11131 0.021716 0.023145 -0.15144 -0.025072 0.048328 -0.0082 -0.06652 0.01447 0.0027086 0.0029133 -0.55076 -0.036674 -0.35145 -0.0095426 -0.38336 0 -0.065179 -0.0099565 -0.07953 0.019083 -0.040639 0.0016642 -0.46993 -0.048588 -0.58769 -0.022606 -0.37617 -0.022744 0.035852 -0.063569 -0.019756 -0.02229 0.0027745 0.010146 -0.18131 -0.51465 -0.47596 0.13258 0.0016642 0.19377 0.48837 0.010081 0.014363 0.090849 0.00041593 -0.049289 -0.042825 -0.60955 -0.458 -0.44073 -0.010168 -0.10516 -0.044514 -0.041838 -0.016105 -0.083874 -0.055095 0.00097064 -0.60584 0.89227 -0.021813 -0.072745 -0.022332 -0.012023 0.17026 -0.054869 -0.0024276 -0.00027724 -0.27404 0.0007779 0.026233 -0.28501 -0.59175 -0.12275 -0.021119 0.13819 0.31594 -0.0060153 -0.018902 -0.022332 0.0086135 -0.073875 Deletion Peak 2 - CN values 1p31.1 chr1:62146229-77102451(probes 32352:41722) chr1:71867963-72829346(probes 38745:39218) chr1:72336914-72342888(probes 38982:38983) 0.023574 0.045476 Actual Copy Change Given -0.27559 -0.043737 -0.0028235 -0.20361 -0.35161 0.0073609 -0.29138 -0.0053992 -0.024043 0.39928 0.050791 0.087824 0.23303 0.49824 0.23457 -0.020412 0.2597 -0.036709 0.027638 -0.092081 0.0041006 -0.39541 0.14756 -0.08418 0.043397 0.35186 0.10468 0.12712 0.46351 -0.30193 -0.0073339 -0.30416 0.13228 -0.82847 0.044857 -0.4984 0.16956 0.025336 -0.0036011 0.013632 0.27561 0.0011414 0.0096751 0.031014 -0.34507 -0.35106 0.017192 0.010842 -0.034495 -0.0081624 -0.20112 0.049185 0.0084743 0.04883 -0.55354 0.16365 0.028622 0.43496 0.36739 0 0.25168 -0.0076259 0.599 0.1613 -0.048478 0.27499 0.074408 0.65661 0.040416 0.023145 0.85621 -0.025072 0.048328 0.11814 0.804 -0.42495 0.0027086 0.11734 0.019643 0.0035733 -0.35145 -0.0095426 -0.38336 0 -0.065179 0.15965 -0.026167 0.019083 -0.0037631 0.057083 -0.46993 0.0041632 -0.56734 -0.0073339 0.32914 -0.63396 0.84343 0.0015255 0.070355 0.085654 0.013535 0.010146 -0.18131 -0.45597 0.050961 0.20855 0.0016642 0.016425 -0.14708 0.020763 0.030484 0.16804 0.00041593 0 0.0022193 0.0087528 0.02539 -0.44073 -0.010168 -0.03292 0.15812 -0.041838 0.0016642 -0.027243 -0.055095 0.00097064 0.02806 -0.041159 0.0056919 0.45663 -0.022332 -0.012023 0.22422 -0.52777 -0.0024276 -0.024524 -0.10592 0.027864 -0.007536 -0.50502 0.0081085 -0.12275 0.12417 0.19187 -0.016567 0.0025485 -0.0081414 -0.022332 0.42049 -0.026654 Deletion Peak 3 - CN values 1q42.12 chr1:204529809-249250621(probes 100929:128603) chr1:226397003-226417206(probes 114993:114995) chr1:226401915-226445527(probes 114994:115008) 0.16985 0.16977 Actual Copy Change Given 0.29421 0.32141 -0.00055444 0.11433 0.030252 0.32253 0.0053193 0.012376 0.37817 0.35773 0.050791 0.087824 0.23303 0.60286 0.23457 1.0941 0.2597 0.091234 0.25339 0.76102 -0.0072122 0.23845 -1.1797 -0.061689 0.043397 -0.012713 0.010894 0.10921 0.11858 0.54947 -0.015741 0.0022805 0.13228 -0.0073339 0.05025 0.025952 0.1795 0.013074 0.16941 0.013632 0.24322 0.0041953 0.56518 0.031014 0.15901 0.22762 0.017192 0.040751 0.46793 0.33572 0.098997 0.064011 0.020903 0.22499 -0.1555 0.16365 0.024408 0 0 -0.018628 0.14131 -0.0069195 0.61262 0.1613 0.36362 0.34047 0.065633 0.63406 0.027165 0.023145 0.88326 -0.025072 0.029415 0.11814 0.77579 0.043299 0.0027086 0.036432 0.019643 0.77772 0.011604 -0.005261 0.18177 0 -0.065179 0.021259 -0.034206 -0.5096 0.01794 0.057083 -0.45993 0.63226 0.046559 0.67703 0.32914 0.049682 0.81851 0.27726 0.070355 0.25965 0.013535 0.0036076 0.10478 0.018523 0.050961 0.20855 0.0016642 0.016425 0.14655 0.020763 -0.1657 0.13079 0.00041593 0.4158 0.66752 0.53925 -0.41245 0 -0.010168 0.42432 0.15812 0.40644 -0.0053473 1.6243 0.23866 0.00097064 0.0087528 0.74499 0.0056919 -0.01038 0 0.20259 0.16385 -0.0008316 -0.0057479 0.54347 -0.10592 -0.46673 0.422 0.64488 0.08161 0.04259 0.12417 0.19279 -0.73766 -0.0037753 -0.0081414 -0.022332 0.22376 0.51438 Deletion Peak 4 - CN values 2q37.3 chr2:220768880-243199373(probes 246306:259408) chr2:239064480-239113102(probes 257615:257637) chr2:239074937-239082439(probes 257617:257618) 0.062762 0.065864 Actual Copy Change Given 0.0061699 -0.041295 0 0.097244 0 -0.0038779 -0.298 0.01783 0.37306 0.44158 0.039411 0.073308 -0.089284 -0.032041 0.085144 0.54894 0 -0.075211 -0.3511 0.092605 0.01277 0.008477 0.021744 0.1492 0.036088 -0.045203 -0.0094046 0.15457 -0.088414 0.18935 0.73372 -0.33295 -0.34549 -0.035857 -0.1173 -0.12849 0.16085 0.19466 -0.09261 0.010285 0.33893 0 0.13933 0.019622 -0.0068482 -0.90076 0 -0.40948 -0.021784 0.65185 0.12105 0.068307 0.42873 0.24529 0.026833 -0.015466 -0.04211 0.023005 -0.024022 0.19832 -0.079476 -0.00013862 -0.0033243 0.081466 -0.03095 -0.18333 0.043344 0.54486 0.0088409 0.0055529 0.0036076 0.058224 0.0026357 0.18002 -0.013127 0.036935 0.0088259 -0.022058 0.0022193 -0.1517 0.0068044 0.15069 0.17332 0.00458 0.045464 -0.0011087 0.21054 0.014051 0.01305 0.38518 0 0.0081959 0.011261 -0.0047079 -0.28599 0.33809 0.166 0.011303 -0.0069492 -0.017029 0.0092466 -0.0025937 0.047552 0.013213 -0.086589 -0.089567 0.0022193 0.10278 0.15955 0.20152 0.12303 -0.069378 0.1673 -0.51948 0.0023581 0 0.0079175 -0.0058576 0.0078434 0.47728 -0.3609 -0.0022892 -0.013471 0.77849 0.061937 0.14444 0.012795 -0.8935 0.015866 0.15016 -0.010646 0.062651 0.080889 0.015168 0.065009 0.45973 -0.28632 -0.00088561 0.63847 0 0.078434 0.037986 -0.0044456 0.18399 0.0012382 0.013963 0.0016642 0.0016642 0.09101 -0.0022495 Deletion Peak 5 - CN values 3p26.2 chr3:1-50611550(probes 259409:287173) chr3:1-3225450(probes 259409:259839) chr3:1-5218939(probes 259409:261092) 0.08422 0.08422 Actual Copy Change Given 0.015028 0 -0.0038779 0.13984 -0.39813 0.00055459 -0.29043 0.024689 0.025463 -0.050776 0.060868 -0.083731 0 0.05694 0.047694 0.57113 0.011579 0.69845 -0.30944 -0.091287 -0.00015513 0.011403 0.050984 -0.29599 -0.37403 -0.45768 0.36051 -0.2834 0.2321 -0.39254 0.71867 -0.3119 0.1784 0.32189 -0.37178 -0.5011 -0.050506 0.043157 0.70232 0.027778 0.51499 0.0028066 -0.042191 0.03637 0.012339 -0.34194 -0.45934 0.058081 0.0076392 -0.0059522 -0.16752 0.084284 -0.4086 -0.11913 0.0096702 0.013911 -0.44974 0.21576 0.20396 -0.1866 0.053147 0.14251 0.027076 -0.12027 0.63335 0.015305 0.049824 -0.051737 -0.52659 -0.53368 0.25433 0 -0.01354 0.22839 -0.030404 0.077286 0.01566 0.054945 0.014888 -0.061555 0.012934 -0.0080244 -0.36522 0.0052749 -0.07881 0.164 0.0029133 0.02511 0.027246 0.14502 0.011121 -0.0091286 0.041883 0.45224 -0.2818 -0.27308 0.8539 -0.29572 -0.00016844 0.01433 -0.20037 -0.33362 0.047649 0.021463 0.25105 0 -0.40019 -0.18358 -0.19011 -0.010508 0.69862 0.14294 0.0075 0.00097064 0.0041632 0.0038955 -0.42057 -0.43943 0.10207 0.011917 -0.30592 -0.0030475 0.014051 0.78003 0.078871 -0.0008316 0.016845 0 -0.27224 -0.42599 0.06462 0.011539 -0.20548 0.010146 0.00062091 -0.075707 -0.2589 -0.45772 0.0082661 0.50654 1.4053 0.068808 -0.29944 -0.27575 0.010703 0.0057435 0.0084743 -0.09318 -0.12329 -0.019177 Deletion Peak 6 - CN values 4q22.2 chr4:92521823-94741521(probes 415818:416839) chr4:93221332-94699200(probes 416131:416794) chr4:94129969-94132930(probes 416463:416464) 3.6144e-11 3.6144e-11 Actual Copy Change Given -0.27891 -0.34587 0.059366 -0.5018 -0.39212 -0.3112 -0.59689 -0.34824 -0.32408 -0.051856 -0.53748 -0.1135 -0.23887 -0.54784 -0.18295 -0.0042929 -0.23456 -0.056577 -0.33433 -0.099999 0.0062315 -0.40826 -0.4703 -0.081871 -0.37487 -0.42396 0 -0.34125 -0.4476 -0.30298 -0.027398 -0.29343 -0.34263 -0.085192 -0.37098 -0.50536 -0.16853 -0.56127 -0.05725 -0.53632 -0.41223 -0.0021848 -0.037405 -0.12174 -0.33418 -0.3105 -0.45902 -0.47162 -0.51887 -0.010508 -0.15784 -0.44334 -0.39986 -0.0028213 -0.54459 -0.39708 -0.42134 -0.40152 -0.263 -0.19049 -0.38253 -0.0084385 -0.58353 -0.3162 -0.011749 -0.23374 -0.4377 -0.082817 -0.52362 -0.52532 -0.084528 -0.18358 -0.011473 -0.42517 -0.3085 -0.4244 -0.22231 -0.4677 -0.54199 -0.005814 -0.45907 0.0036076 -0.34098 -0.090361 -0.018902 -0.24885 -0.52159 -0.5095 -0.46782 -0.31856 -0.4244 -0.36249 -0.58661 -0.017254 -0.28335 -0.60692 0.01703 -0.26793 -0.0034925 -0.24777 -0.20413 -0.32077 -0.17018 -0.43641 -0.39719 -0.15114 -0.39297 -0.17702 -0.17639 -0.094856 -0.40105 -0.22048 -0.21453 -0.4407 -0.35715 -0.54593 -0.41556 -0.44608 -0.31266 -0.43671 -0.30651 0.032563 -0.18735 -0.014276 -0.099604 -0.068127 -0.56246 -0.54955 -0.26637 -0.42934 -0.56475 -0.27739 -0.25745 0.018243 0 -0.041063 -0.24204 0.03678 -0.018628 -0.47459 0 -0.3479 -0.0023553 -0.26777 -0.32042 -0.15536 -0.24156 -0.13135 -0.03095 -0.28869 Deletion Peak 7 - CN values 5p15.2 chr5:1-16049923(probes 467512:477350) chr5:10968873-11906311(probes 474607:475341) chr5:11418915-11423591(probes 474975:474976) 0.098913 0.098913 Actual Copy Change Given -0.28287 -0.014503 -0.0019399 -0.50557 -0.39201 -0.32251 -0.29268 -0.36204 -0.3436 -0.080674 -0.55111 -0.036401 0.12491 -0.022058 -0.1067 -0.03054 -0.22708 -0.016965 -0.35076 -0.10854 -0.0053012 -0.40539 -0.55687 -0.080541 -0.38156 -0.45286 -0.45736 -0.31727 -0.37606 -0.02603 -0.026263 -0.31877 -0.31143 -0.10933 0.026233 0.44782 -0.1712 -0.025901 -0.074811 -0.54239 -0.067658 1.3648 -0.47293 -0.12642 0 -0.3943 -0.36822 0.044432 -0.0059522 -0.013402 -0.17132 -0.45998 -0.41685 -0.27152 -0.5464 -0.39953 -0.41546 -0.37741 0.24591 -0.21206 -0.30157 -0.0066432 -0.57913 0 -0.16064 -0.23826 -0.45315 -0.058612 -0.55079 -0.55166 -0.07361 -0.17508 -0.40782 0.0084743 -0.0123 -0.4256 -0.46934 -0.50743 -0.54411 -0.029994 -0.3409 -0.31386 -0.35362 -0.09644 -0.20635 -0.23374 -0.0080918 -0.51925 -0.49529 -0.31851 -0.44652 -0.38201 -0.58225 -0.02816 0.29104 -0.63774 -0.046945 0.262 -0.0043227 -0.2491 -0.21826 -0.26661 -0.1774 -0.44637 -0.41157 0.1685 0 -0.18534 -0.18873 -0.16345 -0.28219 -0.62103 -0.21898 -0.45018 -0.0040162 -0.53002 -0.41014 0.0039805 -0.069923 -0.45891 -0.31802 -0.43734 -0.2714 -0.033677 -0.13514 -0.0047079 -0.46918 -0.24944 -0.27176 -0.42138 -0.55497 -0.28857 -0.27592 -0.54153 -0.012365 -0.051721 -0.068127 -0.46125 -0.018216 -0.53037 -0.55046 -0.33676 -0.27117 -0.28489 -0.33248 -0.15088 0.0019418 -0.13109 -0.22367 -0.36787 Deletion Peak 8 - CN values 5p14.3 chr5:22139046-37847858(probes 480381:489048) chr5:21747980-22858567(probes 480156:480731) chr5:22304377-22311985(probes 480444:480445) 0.11998 0.11535 Actual Copy Change Given -0.28287 -0.014503 -0.0019399 -0.50557 -0.39201 -0.32251 -0.29268 -0.36204 -0.3436 -0.021921 -0.55111 -0.036401 0.12491 -0.0044414 -0.1067 -0.03054 -0.22708 -0.016965 0.15139 -0.10854 -0.0053012 -0.40539 -0.55687 -0.080541 -0.38156 -0.45286 -0.45736 -0.31727 -0.37606 -0.02603 -0.024661 -0.31877 -0.31143 -0.10933 0.026233 -0.016272 -0.1712 -0.025901 -0.074811 -0.54239 -0.067658 -0.58007 -0.47293 -0.12642 0 -0.33756 -0.36822 -0.48092 -0.013614 -0.013402 -0.17132 -0.45998 -0.41685 -0.27152 -0.5464 -0.39953 -0.40628 -0.37741 0.24591 -0.21206 -0.23606 -0.0066432 -0.57913 0 -0.12174 -0.23826 -0.45315 -0.058612 -0.53214 -0.55166 -0.07361 -0.17508 -0.40782 -0.0098044 -0.0123 -0.4256 -0.46934 -0.50743 -0.54411 -0.037531 -0.34297 -0.29485 -0.35362 -0.09644 -0.20635 -0.23374 -0.0080918 -0.51925 -0.49529 -0.31851 -0.44652 -0.38201 -0.58225 -0.02816 0.29104 -0.63774 -0.046945 0.262 -0.0043227 -0.2491 -0.20286 -0.26661 -0.1774 -0.44637 -0.41157 0.1685 0 -0.18534 -0.18873 -0.16345 -0.28219 -0.21108 -0.21898 -0.45018 -0.3478 -0.53002 -0.41014 0.0039805 -0.069923 -0.45891 -0.31802 -0.43734 -0.2714 -0.033677 -0.13514 -0.0047079 -0.46918 -0.22194 -0.27176 -0.42138 -0.55497 -0.28857 -0.27592 -0.54153 -0.012365 -0.051721 -0.068127 -0.46125 -0.018216 -0.53037 -0.55046 -0.33676 -0.27117 -0.28489 -0.33248 -0.15088 0.0019418 -0.13109 -0.22367 -0.36787 Deletion Peak 9 - CN values 5q12.1 chr5:58998410-59780946(probes 498995:499381) chr5:58260298-59818245(probes 498450:499406) chr5:58659389-58966145(probes 498734:498973) 0.0071865 0.0074629 Actual Copy Change Given -0.28287 -0.35741 -0.0019399 -0.50557 -0.84886 -0.32251 -0.29268 -0.36204 -0.3436 -0.021921 -0.55111 -0.036401 0.12491 0.035806 -0.1067 -0.013953 -0.22708 0 0.15139 -0.10854 0.001509 -1.0514 -0.54419 -0.080541 -0.38156 -0.45286 -0.45736 -0.31727 -0.35118 -0.04726 -0.016979 -0.31109 -0.31143 -0.10933 0.026233 -0.016272 -0.1712 0.0026357 -0.074811 -0.54239 -0.078556 -0.58007 -0.47293 -0.12642 0 -0.33756 -0.36822 -0.47858 0.0016642 -0.013402 -0.16853 -0.45998 -0.41685 -0.27152 -0.5464 -0.39953 0.019083 -0.37741 -0.084793 -0.21206 -0.23606 -0.0066432 -0.57913 0 -0.12174 -0.74942 -0.45315 -0.058612 -0.53214 -0.5292 -0.07361 -0.17508 -0.40782 -0.0051896 -0.0123 -0.4256 -0.22615 -0.47979 -0.54411 0.00013863 -0.34297 -0.29485 -0.35362 -0.09644 -0.20635 -0.2437 -0.0090676 -0.5162 -0.48293 -0.31851 -0.44652 -0.38201 -0.58225 -0.02816 0.29104 -0.63774 -0.046945 -0.28513 -0.0043227 -0.2491 -0.20286 -0.26661 -0.1774 -0.44637 -0.39282 0.1685 0 -0.18534 -0.18873 -0.16345 -0.28219 -0.21108 -0.21898 -0.45018 -0.36322 -0.53002 -0.41014 0.0039805 -0.0014596 -0.45891 -0.31802 -0.43734 -0.2714 -0.033677 -0.13514 -0.0047079 -0.46918 -0.22194 -0.27176 -0.42138 -0.55497 -0.28857 -0.27592 -0.53966 -0.0010425 -0.39514 -0.068127 -0.46125 -0.018216 -0.49235 -0.55046 -0.33676 -0.28667 -0.28489 -0.34308 -0.15088 0.0019418 -0.13109 -0.22367 -0.36787 Deletion Peak 10 - CN values 6p22.3 chr6:15109824-15538684(probes 577665:577768) chr6:15240710-15538684(probes 577726:577768) chr6:15197988-15539672(probes 577712:577770) 5.3812e-07 5.3812e-07 Actual Copy Change Given 0.013353 -0.0078863 0.14384 0 0.020562 -0.0050372 -0.011759 0.0091938 0.012308 -0.027257 -0.022124 0.053237 -0.027808 -1.1105 0 -0.030677 -0.00062541 -0.048748 0.013772 0.53995 0.75736 -0.12576 0.0048634 0.0079175 0.01842 0.021043 -0.0081624 -0.15721 0.09856 0.15891 0.75553 0.02539 -0.34985 -0.12551 -0.090758 0.016006 0.6629 0.011767 -0.86814 0.0017303 -1.2929 -0.0055055 -0.023891 0.078294 -0.013026 0.17799 0.028268 0.057939 -0.034495 0.33529 0.081466 0.057971 0.012015 0.14474 0.014012 0 0 0.010842 0.18722 0.9361 -0.86994 0.1431 -0.65239 -0.070001 -0.49068 0.2958 0.0034595 0.63443 -1.2929 -0.54001 0.71358 0.029606 -0.0093282 -0.44921 0.78138 0.039619 0.0031251 0.052525 -0.34687 -0.76124 0.011539 0.51159 -0.15195 0.0024969 0.069382 -0.053967 -0.044128 0.0022193 0.020459 -0.17883 0.012795 -0.38392 -0.0065856 0.67586 0.33619 -0.057385 0.83281 0.010285 0.24936 -0.013341 0.0075 0.0081959 -0.019314 0.00027728 -0.059538 -0.14013 0.0019418 0.021884 -0.026611 -0.0063668 -0.43059 -0.22073 0.20748 -0.026167 -0.014745 0.53555 0.01362 -3.0254e-06 0.0011742 -0.025841 0.0086135 -0.023566 0.0084743 0.63956 0.060651 0 -0.093006 -0.027398 0 0.17566 0.065799 -0.012563 -0.25744 0.00031804 -0.0010425 -0.086989 0.15891 0.033494 -0.014641 -0.13884 0.011775 -0.012162 0.24084 -0.29784 0.010703 0.0053265 0 0 -0.0055375 0.2484 Deletion Peak 11 - CN values 6q26 chr6:155575868-165741428(probes 655319:661428) chr6:161767520-163153207(probes 659197:659802) chr6:161748481-163124151(probes 659189:659795) 0.0031874 0.0031107 Actual Copy Change Given 0.013353 0.0044411 0.14384 -0.19575 0.041258 0.0076392 0.0064316 0.015866 0.047767 -0.07109 0 0.027601 -0.027808 -0.031213 -0.040192 -0.64368 0.075888 -0.056442 -0.0020784 -0.09855 0.0094325 0.21453 0.035439 0 0.053237 -0.030316 -0.06142 -0.14657 -0.00018831 0.15726 -0.02384 -0.37763 -0.36612 -0.10421 0.024268 -0.046041 -0.17158 0.0056919 0.56401 0.021183 -0.069933 -0.0055055 0.57623 -0.11443 0.0037093 0.23241 0.028268 -0.48869 0.00055459 0.33529 -0.072441 -0.45109 0.024269 -0.0093174 0.039233 0 -0.016093 0.010842 -0.12823 -0.37104 0.036839 0.1431 0.016985 -0.070001 -0.51778 -0.19487 0.019223 0.63443 -0.53178 -0.53317 -0.066118 0.23985 -0.43485 0.14607 0.80189 0.039619 0.0031251 0.0079175 0.040892 0.74633 0.011539 0.2866 -0.15195 0.0024969 0.29183 0.0054139 0 0.018243 -0.48441 -0.15952 0.012795 0.0114 0.033972 0.6857 0.3017 -0.0024938 -0.10009 0.010285 0.25197 0.0084743 0.017544 0.0081959 -0.019314 0.023478 -0.059538 -0.14013 0.0019418 0.021884 0.074984 -0.0063668 -0.12465 -0.25889 0.014723 -0.0091286 0.0080567 -0.020138 0.028903 0.00537 0 0.011943 0.0375 0.42603 0.0084743 0.65886 -0.034665 0 0.026092 -0.024251 0.024689 0.10092 0.056085 0.013789 -0.24982 0.010926 -0.0010425 -0.065313 -0.044822 0.033494 -0.020346 -0.48963 0.10818 -0.012162 0.0038854 0.21895 0.010703 0.0092107 0.0049969 0 -0.0055375 0.063181 Deletion Peak 12 - CN values 7q11.22 chr7:69000716-70601215(probes 699096:699998) chr7:69054978-70260048(probes 699119:699835) chr7:69747461-69752140(probes 699478:699479) 0.051659 0.051318 Actual Copy Change Given 0.31553 0.24404 0.18586 0.32286 0.4571 0.044795 1.0085 1.1216 1.0089 1.3168 0.62707 0.3139 0.65222 0.40719 0.30473 1.156 0.25063 1.4709 0.55744 -0.024798 -0.0045177 0.23489 0.68403 0.74166 0.49251 0.68163 0.11169 0.75375 0.13095 0.2763 0.66771 0.18753 0.48182 -0.13781 0.42587 1.3018 0.51699 0.54136 0.63426 0.50325 1.1731 0.54422 -0.45676 0.077718 0.49765 0.21063 0.4391 0.41814 0.9892 0.68515 0.11026 0.069367 0.44429 0.25574 0.55288 0.39562 0.44799 0.028903 0.18662 0.89026 2.9171 0.29437 0.04954 1.0062 0.47896 0.18495 -0.42036 0.61514 0.46069 0.019553 -0.059 0.46724 0.48148 0.21899 0.80228 0.54594 -0.070825 0.068235 0.015447 0.83701 0.36887 0.57202 0.71377 0.098997 -0.0079513 0.47358 1.0553 0.95652 0.51055 0.46536 0.46141 0.37792 0.0040243 -0.016017 0.35349 0.76466 -0.050955 0.61262 0.49939 0.011346 0.58801 0.33011 0.26279 0.48785 0 0.69316 1.1199 0.23024 0.37232 0.3832 0.22433 0.13576 0.24062 0.74005 0.35039 0.0024969 0.43334 0.4366 0.63874 0.6008 0.32931 0.42688 0.080745 -0.034086 1.4815 0.094201 -0.52287 0.53546 0.31498 0.76168 0.81238 -0.077212 0.23944 0.47942 0.13753 0.61335 0.18026 0.51553 -0.014366 0.14563 0.17884 0.047552 0.26809 0.20519 0.32663 0.31809 0.48795 0.27001 0.43648 0.43243 Deletion Peak 13 - CN values 7q35 chr7:108534673-159138663(probes 718393:744538) chr7:145806546-148119187(probes 738072:739532) chr7:147164661-147167932(probes 738803:738804) 0.11738 0.11535 Actual Copy Change Given 0.30798 -0.021098 0.18586 0.13248 0.45557 0.044795 0.3709 0.0072217 0.38874 1.3168 0.042381 0.32141 0.65222 0.39924 0.30473 1.1377 0.22716 0.75433 0.11316 -0.11405 -0.0027871 0.26169 0.15203 0.74166 0.48003 0.83805 0.11169 0.19147 0.13095 0.28469 0.66771 -0.0010614 0.46832 -0.14734 0.41006 0.45837 -0.043331 -0.5791 0.54947 0.50325 -0.35516 -0.033237 0.10142 0.077718 0.49765 0.20916 0.4391 0.38337 0.9892 0.68515 0.1114 0.082405 0.45564 0.25574 0.55288 0.39562 0.44139 0.023316 0.1644 0.88526 0.71923 0.29437 0.03863 1.1029 0.47896 0.18495 -0.42036 0.6224 0.98011 0.020343 -0.0087804 0.46724 0.48148 0.21899 -0.04724 0.076998 0.011891 0.055373 0.015447 0.8202 -0.086253 0.56109 0.71377 0.093475 0.049256 0.47358 1.0281 0.014749 0.51055 0.46536 -0.0043743 0 0.0040243 -0.0148 -0.26973 0.064797 -0.013357 0.095616 0.49939 0.011346 0.58801 0.32125 0.091796 0.47933 0 0.69316 -0.41069 0.23024 0.37232 0.3832 -0.12292 0.055499 0.22484 -0.48932 0.35642 0.0027745 -0.42156 0.4366 0.63803 0.4447 0.32931 0.41647 0.080745 -0.035035 0.067088 0.094201 -0.58169 0.53546 0.31498 0.99057 0.84534 -0.3022 0.23241 0.53309 0.13753 0.63171 0.18026 0.014834 -0.019454 0.095072 0.099579 0.047552 0.27143 0.21724 -0.35863 0.31809 0.48795 0.27001 0.43648 -0.021921 Deletion Peak 14 - CN values 9p24.3 chr9:1-71039939(probes 825662:848855) chr9:1-1540137(probes 825662:825814) chr9:1-12531492(probes 825662:831839) 7.3329e-05 0.065864 Actual Copy Change Given -0.28037 -0.012851 -0.036538 0.065799 -0.37937 -0.33121 -0.58703 -0.34698 0.027008 -0.049695 -0.55512 0 -0.007472 0.031943 -0.028081 -0.0098185 0.0022589 -0.043466 -0.66772 -0.092345 -0.0011252 -0.39463 -0.51709 -0.048883 -0.76227 -0.18446 -0.13987 -0.34251 0.067088 -0.91798 -0.0048461 0.030732 -0.40992 -0.13303 -0.3304 -0.50048 -0.17299 -0.57427 0.63554 -0.52051 -0.040276 -0.0053673 -0.10983 -0.12707 -0.029621 0.55549 -0.86582 0.008892 -0.55186 0.0093098 0.099579 -0.78307 0.021323 0 0.0094478 -0.82159 0.0086135 -0.37155 -0.11678 0.23721 -0.25273 0 -0.5717 -0.22022 0.42385 -0.23826 -0.40981 -0.087727 -0.54081 -0.52548 0.84337 -0.16408 0 0.19254 0.016705 0.038761 -0.21904 -0.51661 -0.53855 0.0058309 -0.054825 -0.0027028 -0.083997 -0.025209 -0.10579 -0.33075 0.011261 0.024969 -1.0678 -0.21069 0.006109 0.0072217 -0.57226 0.62351 0.33804 0.18328 -0.017298 0 0.2532 -0.2531 0.021043 0.24669 0.0063871 -0.45715 0.080456 -0.39152 0.38595 0.018103 -0.18358 -0.23692 -0.44333 -0.22713 -0.27107 -0.44286 -0.34858 0.016425 -0.40771 0.014146 -0.0024291 -0.00117 0.0069435 0 0.010146 0.77133 0 -0.25998 -0.59701 -0.41432 0.0091705 0.21506 0.32044 -0.13044 -0.33341 0 -0.0035349 0.2653 0.13214 -0.97372 -0.0014885 -0.51063 -0.53612 0.044749 -0.23312 -0.28243 -0.33121 0.016477 -0.49141 -0.033541 -0.14682 -0.29334 Deletion Peak 15 - CN values 9p23 chr9:9437437-12687261(probes 830899:831910) chr9:8310705-10619051(probes 830178:831507) chr9:1-12531492(probes 825662:831839) 3.2685e-05 0.0009637 Actual Copy Change Given -0.28037 -0.012851 -0.036538 0.065799 -0.37937 -0.33121 -0.58703 -0.34698 0.026831 0 -0.55512 0 -0.007472 0.031943 -0.028081 -0.0098185 0.0022589 -0.043466 -0.6565 -0.092345 -0.0011252 -0.39463 -0.51709 -0.048883 -0.76227 0.049256 -0.13987 -0.34251 0.067088 -0.8902 -0.0048461 0.030732 -0.40992 -0.10299 -0.3304 -0.50048 -0.17299 -0.57427 0.63554 -0.52051 -0.040276 0.013246 -0.10983 -0.11926 -0.029621 0.55549 0.027706 0.022164 -0.036946 0.0093098 0.099579 -0.78307 0.021323 0 0.0094478 -0.83564 0.0086135 -0.37155 0.017684 0.23721 -0.25273 0 -0.5717 -0.22022 0.42385 -0.23826 -0.40981 -0.087727 -0.54081 -0.52548 0.84337 -0.16408 0 0.19254 0.016705 0.038761 -0.21904 -0.48002 -0.53855 0.0058309 -0.054825 -0.0027028 -0.083997 -0.025209 -0.10579 -0.33075 0.011261 0.024969 -0.47619 -0.21069 0.006109 0.0072217 -0.57226 0.62351 0.33804 0.25402 -0.017298 0 0.2532 -0.2531 0.021043 0.24669 0.0063871 -0.45715 0.080456 -0.36567 0.38595 0.018103 -0.18358 -0.23692 -0.43439 -0.22713 -0.22318 -0.44286 -0.34858 0.016425 -0.43405 0.014146 -0.0024291 -0.00117 0.0069435 0 0.010146 0.84632 0 -0.25998 -0.59701 -0.41432 0.0091705 0.19748 0.38717 -0.13044 -0.2429 0 -0.0035349 0.2653 0.070817 -0.97372 -0.0014885 -0.51063 -0.53612 0.044749 -0.23312 -0.28243 -0.33121 0.016477 -0.49141 -0.033541 -0.14682 -0.29334 Deletion Peak 16 - CN values 9q33.3 chr9:129609858-130003734(probes 887859:888074) chr9:129845685-129887007(probes 887987:888003) chr9:129870799-129873631(probes 887996:887997) 0.021089 0.040891 Actual Copy Change Given -0.28037 0.23225 -0.038686 0.026795 -0.37937 -0.33121 -0.28734 -0.024976 -0.041985 0 0.014175 0 -0.007472 0 -0.053881 0.56241 0.0022589 -0.043466 -0.29461 -0.092345 -0.0011252 -0.37876 -0.47649 -0.057102 -0.38906 -0.13182 -0.37374 0.026132 -0.17474 -0.29721 -0.0048461 -0.3479 0.057339 -0.08094 -0.3304 -0.25731 -0.15298 -0.57427 -0.047936 -0.52051 0 -0.56999 -0.060127 -0.01106 -0.029621 -0.040073 0.027706 -0.0051227 -0.046632 -0.0028641 0.099579 -0.43556 -0.0049639 0 0.010918 -0.39015 -0.015879 -0.37155 0.017684 0.84258 -0.25273 0 -0.5717 -0.22022 0.38949 -0.24034 -0.40981 -0.069008 -0.52301 -0.52072 -0.052666 -0.16408 -0.45758 0.22176 -0.00081162 -0.016567 -0.21904 -0.48002 -0.53855 0.65424 -0.29615 0 -0.083997 -0.025209 -0.10579 -0.33075 -0.022195 -0.0031859 -0.8816 -0.22539 0.006109 0.0072217 -0.55857 -0.042799 -0.34136 -0.6147 -0.017216 0 0.2532 -0.2531 0.021043 0.31482 0.0063871 0.11663 0.065226 -0.36567 0.39081 -0.19468 -0.19103 -0.040616 -0.11401 0.075111 -0.0023553 0.41346 -0.032178 -0.55787 0.40611 0.014146 -0.0024291 0.40187 0.0069435 0.40916 0.084932 -0.034359 0 -0.25998 -0.42025 -0.005019 0.0091705 -0.40512 -0.53926 -0.13044 -0.25285 0 -0.0035349 -0.064911 -0.18911 -0.47357 -0.0014885 -0.49677 0.077574 0.20626 0.11858 -0.28992 -0.35499 0.016477 -0.0038779 -0.094328 -0.14682 -0.092742 Deletion Peak 17 - CN values 9q34.2 chr9:136602059-137007089(probes 891763:891980) chr9:136626706-136864934(probes 891781:891922) chr9:136734096-136737117(probes 891852:891853) 0.025521 0.061344 Actual Copy Change Given -0.28037 0.23225 -0.038686 0.026795 -0.37937 -0.33121 -0.28734 -0.024976 -0.041985 0 0.014175 0 -0.007472 0 -0.053881 0.50553 0.0022589 -0.043466 -0.29461 -0.092345 -0.0011252 -0.37876 -0.66016 -0.057102 -0.38906 -0.13182 -0.37374 0.026132 -0.17474 -0.29721 -0.0048461 -0.3479 0.057339 -0.08094 -0.3304 -0.25731 -0.15298 -0.57427 -0.047936 -0.52051 0 -0.56999 -0.060127 -0.01106 -0.029621 -0.040073 0.0006214 -0.0051227 -0.046632 -0.0028641 0.06791 -0.43556 -0.0049639 0 0.010918 -0.39015 -0.015879 -0.37155 0.017684 -0.33248 -0.25273 0 -0.5717 -0.091816 0.38949 -0.24034 -0.40981 -0.067205 -0.56794 -0.52072 -0.052666 -0.16408 -0.45758 0.22176 -0.049456 -0.016567 -0.21904 -0.48002 -0.53855 0.65424 -0.29615 0 -0.083997 -0.025209 -0.10579 -0.33075 -0.022195 -0.0031859 -0.57251 -0.22539 0.006109 0.0072217 -0.55857 -0.032178 -0.34136 -0.35635 -0.14276 -0.050235 0.2532 -0.29963 0.021043 0.31482 0.0063871 0.11663 0.065226 -0.36567 0.39081 -0.19468 -0.19103 -0.029994 -0.11401 0.075111 -0.0023553 0.41346 -0.032178 -0.57725 0.40611 0.014146 -0.0024291 0.40187 0.0069435 0.40916 0.084932 -0.034359 0 -0.25998 0.43969 -0.005019 0.0091705 -0.40512 -0.53926 -0.13044 -0.25285 0 -0.0035349 -0.064911 -0.18911 -0.47357 -0.0014885 -0.54771 0.077574 0.20626 0.11858 -0.34416 -0.35499 0.016477 -0.0038779 -0.094328 -0.14682 -0.092742 Deletion Peak 18 - CN values 10p15.3 chr10:1-7202930(probes 893335:897846) chr10:1-742144(probes 893335:893420) chr10:468600-474367(probes 893378:893379) 0.055393 0.056739 Actual Copy Change Given -0.036465 -0.40628 -0.010508 -0.056846 -0.41459 -0.035963 -0.30248 -0.0012473 -0.0026288 -0.093667 -0.030878 -0.052261 -0.10071 -0.607 -0.15388 -0.64753 -0.247 -0.10565 -0.33526 0.34291 -0.018232 -0.40252 -0.62325 -0.31573 -0.40657 -0.039665 -0.080674 -0.34902 -0.2965 -0.27571 -0.015054 -0.021358 -0.3659 0.2686 -0.39919 -0.12318 -0.17816 0 -0.072541 -0.5431 -0.39102 0.00072534 -0.60669 -0.15643 0.045244 -0.40119 -0.38386 -0.51568 -0.076193 -0.018216 -0.18118 -0.48901 -0.012162 -0.059404 -0.57491 -0.014778 -0.4316 -0.40506 -0.058327 -0.23251 -0.35122 -0.0081624 -0.58921 -0.34076 -0.21985 -0.25128 -0.50753 -0.079023 -0.57672 -0.53561 -0.15656 0.041317 -0.48449 -0.42112 -0.017391 -0.43246 -0.2338 -0.55658 -0.56545 -0.12551 -0.3282 -0.01037 -0.13711 -0.111 0.11023 -0.03245 -0.55837 -0.20386 -0.031381 -0.12174 -0.46918 -0.41365 -0.58201 -0.035176 -0.40899 -1.0724 -0.15412 -0.017254 -0.015496 0.029325 -0.21067 -0.030404 -0.059942 -0.46366 -0.40462 -0.4359 -0.013815 -0.12992 -0.20784 0.16956 -0.47377 -0.25032 -0.014724 -0.023977 -0.41367 -0.57832 -0.3828 -0.019495 -0.013751 -0.019572 -0.014503 -0.052341 -0.32112 -0.041704 0.032845 -0.26913 -0.011788 0.4951 -0.015191 -0.51141 -0.57901 -0.031223 -0.31867 -0.018574 -0.0060243 -0.02188 -0.25974 -0.0057296 -0.0047079 0.90855 -0.081073 -0.3424 -0.027398 -0.30694 -0.37654 -0.15761 -0.019183 -0.13263 -0.0088943 0.31771 Deletion Peak 19 - CN values 10q23.1 chr10:82406275-85904649(probes 940590:943076) chr10:83632204-84751591(probes 941388:942233) chr10:84115516-84120246(probes 941811:941812) 0.1386 0.13915 Actual Copy Change Given 0 -0.014503 -0.010508 -0.056846 -0.39379 0.20289 -0.30248 -0.0012473 -0.0026288 -0.038986 -0.030878 -0.052261 -0.10071 -0.53195 -0.15388 -0.0034627 -0.247 -0.044551 0.017824 0.34291 0.76004 -0.40252 -0.56236 -0.29995 -0.38933 -0.039665 -0.45576 -0.34618 -0.27894 -0.27571 -0.015054 -0.34308 -0.31657 0.30633 -0.37369 -0.079875 -0.15975 0 -0.059673 -0.5349 -0.39102 0.00072534 -0.60669 -0.15643 0.045244 -0.35954 -0.38386 -0.48376 -0.025209 -0.018216 0.11433 -0.48901 0.0081959 -0.041838 -0.57491 -0.014778 -0.42265 -0.40506 -0.14597 -0.20232 -0.35122 -0.0081624 0.064511 -0.34076 -0.05442 -0.25128 -0.45244 -0.079023 -0.54687 -0.53561 -0.065676 0.041317 -0.48449 -0.42112 -0.017391 -0.42974 -0.24157 -0.47786 -0.54229 -0.028491 -0.3282 -0.01037 -0.089011 -0.10092 0.042732 -0.03245 -0.55837 -0.20386 0 0.047015 -0.01579 0.0024969 -0.58201 0.00027728 -0.30921 -0.27663 -0.078504 -0.017254 -0.015496 -0.0060559 -0.20237 -0.33376 -0.059942 -0.46366 -0.40462 -0.3773 0.013213 -0.12992 -0.1955 0.58833 -0.43602 0.10685 -0.0048461 -0.012989 0.34193 0.0060197 -0.37381 0.019179 -0.013751 -0.019572 -0.0048967 -0.010232 -0.32112 -0.035448 0.032845 -0.26913 0.012097 -0.23802 0.0068044 -0.41493 -0.57901 0 -0.26733 -0.018574 -0.0060243 0 -0.25974 -0.46625 -0.0047079 0.084643 -0.021302 -0.3424 -0.010232 -0.28553 0.35186 -0.15433 -0.0058542 -0.13263 -0.0088943 0.31771 Deletion Peak 20 - CN values 10q26.3 chr10:134944852-135534747(probes 973749:973831) chr10:135004075-135534747(probes 973775:973831) chr10:129775361-135534747(probes 971296:973831) 9.1106e-08 9.1106e-08 Actual Copy Change Given 0 -0.026959 -0.010508 -0.20635 -0.84807 0.20289 -0.28747 -0.0012473 -0.017871 -0.83446 -0.71098 -0.052261 -0.41388 -0.59507 -0.15764 -0.0034627 -0.247 -0.044551 -0.047395 0.34291 -0.020291 -0.39641 -0.56236 -0.29733 -0.38728 -0.48879 -0.45576 -0.37604 -0.35419 -0.372 -0.015054 -0.03611 -0.31657 0.30633 -0.40354 -0.079875 -0.15975 0 -0.084528 -0.5349 -0.35344 0.00072534 -0.58631 -0.15643 0.045244 -0.39966 -0.36391 -0.48376 -0.080602 -0.018216 0.10025 -0.48297 0.0081959 -0.041838 -0.55934 0.031389 -0.42265 -0.40506 -0.11312 -0.27798 -0.35122 -0.0081624 0.064511 -0.22108 -0.067673 -0.25128 -0.46621 -0.047952 -0.53524 -0.53928 -0.014778 0.041317 -0.48449 -0.41377 -0.017391 -0.42974 -0.27933 -0.56759 -0.54229 -0.15158 -0.3282 -0.01037 -0.86452 -0.10092 0.042732 -0.03245 -0.55837 -0.20386 0.013469 0.030451 -1.0135 -0.82806 -0.57644 0.00027728 -0.32132 -0.14207 -0.060219 -0.024273 -0.015496 0 -0.2102 -0.33376 -0.050911 -0.0011625 -0.40462 -0.3773 0.013213 -0.12992 -0.58686 0.58833 -0.43602 0.032182 -0.0048461 1.2293 -0.4476 0.016565 0.074408 0.019179 -0.013751 -0.018826 0.019643 -0.010232 -0.71657 -0.035448 0.032845 -0.26913 0.0044411 0.14957 0.0068044 -0.4589 -1.2929 0 -0.26733 -0.0084385 -0.0060243 -0.020549 -0.26564 -0.46625 -0.0047079 0.060508 0.48664 -0.3424 -0.010232 -0.28553 0.35186 -0.14832 -0.0058542 -0.12317 0.021744 0.31771 Deletion Peak 21 - CN values 11p15.5 chr11:1-63334217(probes 973832:1008172) chr11:1-718435(probes 973832:973883) chr11:1-1596245(probes 973832:974148) 0.1386 0.13915 Actual Copy Change Given -0.2926 -0.021921 -0.04577 -1.0581 -0.39335 -0.39808 -0.28462 -0.36508 -0.38038 -0.022195 -0.55211 -0.059538 -0.25515 -0.5096 -0.10263 -0.01209 -0.23444 -0.048883 -0.3078 -0.097891 -0.0036176 -0.40052 -0.46168 0.16623 -0.39453 -0.022708 -0.45511 -0.33225 -0.44297 -0.28549 -0.035833 0.61208 -0.32193 -0.083997 -0.37456 -0.57753 0.12167 -0.58593 0.64249 -0.5426 -0.37937 -0.59066 -0.59579 -0.10526 -0.005298 -0.36522 -0.51306 -0.46897 -0.020412 -0.005261 -0.17853 -0.4704 -0.47984 -0.27308 -0.55514 -0.38593 -0.37008 -0.39675 0.21299 0.36657 0.034254 -0.0078863 0.058224 -0.26456 0.015587 -0.24418 -0.4119 -0.084731 -0.53229 -0.54345 0.85938 -0.17297 -0.47965 -0.40937 -0.051292 -0.21565 0.013147 -0.58323 -0.55266 -0.030625 -0.35236 -0.006505 -0.36669 -0.094856 0.051245 0.21376 -0.55834 -0.52706 -0.50351 -0.1651 -0.45179 -0.38226 -0.57871 -0.023155 -0.30674 0.059651 -0.012117 -0.29969 -0.0087443 -0.58333 -0.20423 0.0066653 0 0.013632 0.08161 -0.40845 -0.39475 -0.21849 -0.18949 0 0.1717 -0.22541 -0.26396 -0.46312 -0.36737 0.010564 -0.41575 -0.44268 -0.34852 -0.47685 -0.33248 0.40827 -0.0096806 -0.084179 -0.10959 -0.26516 -0.067324 -0.022469 -0.29023 -0.4135 -0.019147 -0.2952 -0.35385 -0.54885 -0.074213 -0.064374 -0.15893 -0.46901 -0.0069195 0.11932 0.044574 0.053806 -0.25164 -0.29158 -0.75124 -0.15152 -0.54059 -0.1307 -0.21082 -0.30392 Deletion Peak 22 - CN values 11p12 chr11:1-135006516(probes 973832:1050646) chr11:40133134-41482335(probes 998710:999662) chr11:40835398-40837712(probes 999187:999188) 0.21504 0.24965 Actual Copy Change Given -0.2926 -0.3711 -0.04577 -0.54613 -0.39335 -0.29674 -0.28462 -0.35829 -0.38038 -0.022195 -0.55211 -0.059538 -0.32874 -0.53144 -0.10263 -0.01209 -0.23444 -0.052105 -0.32769 -0.097891 -0.010893 -0.40052 -0.46168 0.14875 -0.39453 -0.46525 -0.46706 -0.31758 -0.44297 -0.28168 -0.0087146 0 -0.32193 -0.09261 -0.37456 -0.51414 0.12167 -0.57051 0.65167 -0.5426 -0.39822 -0.59066 -0.59579 -0.10526 -0.005298 -0.36522 -0.4795 -0.47142 -0.018628 -0.013677 -0.13251 -0.4704 -0.42735 -0.27308 -0.55514 -0.39819 -0.37247 -0.39675 0.21299 0.33398 -0.35396 -0.0078863 0.058224 -0.27392 0.005559 -0.24418 -0.4119 -0.081487 -0.54409 -0.53865 0.85938 -0.17297 -0.47965 -0.40937 -0.024661 -0.21565 0.013147 -0.49073 -0.55266 -0.015191 0.0093098 -0.006505 -0.36669 -0.10108 0.051245 0.21376 -0.53815 -0.52706 -0.50133 -0.16675 -0.45179 -0.3819 -0.57871 -0.023155 -0.32013 0.060508 -0.026878 -0.30153 -0.0087443 -0.26047 -0.20945 -0.34756 0 0.013632 0.08161 -0.37909 -0.39475 -0.21849 -0.18949 -0.042863 0.1717 -0.23204 -0.22367 -0.47099 -0.36737 0.010564 -0.41575 -0.443 -0.33682 -0.47685 -0.33248 -0.45929 -0.0030475 -0.028355 -0.10959 -0.26516 0.012097 -0.022469 -0.29023 -0.4135 -0.019147 -0.2952 -0.25007 -0.54885 -0.074213 -0.064374 -0.15893 -0.46901 -0.0069195 0.11462 0.019091 -0.3729 -0.26264 -0.29158 0.2133 -0.15152 -0.24788 -0.1307 -0.21082 -0.30392 Deletion Peak 23 - CN values 11q12.3 chr11:40133134-79116454(probes 998710:1015399) chr11:62200370-62325271(probes 1007606:1007665) chr11:62249661-62254703(probes 1007636:1007637) 0.070612 0.11332 Actual Copy Change Given -0.2926 -0.3711 -0.04577 -0.54613 -0.39335 -0.29674 -0.60514 -0.41124 -0.38038 -0.022195 -0.55211 -0.065715 -0.32874 -0.53144 -0.10263 -0.01209 -0.23444 -0.046312 -0.32769 -0.097891 -0.010893 -0.40052 -0.47268 -0.31774 -0.39453 -0.46525 -0.035857 -0.31758 -0.44297 -0.28168 -0.0087146 0 -0.33234 -0.09261 -0.37456 -0.51414 0.12167 -0.57051 0.65167 -0.5426 -0.39822 -0.59066 -0.59579 -0.10526 -0.34873 -0.36522 -0.4795 -0.46908 -0.55557 -0.013677 -0.13251 -0.53371 -0.42735 -0.27308 -0.55514 -0.39819 -0.37247 -0.39675 0.21299 -0.20542 -0.35396 -0.0078863 0.033127 -0.27392 0.019783 -0.24418 -0.4119 -0.081487 -0.54409 -0.53865 -0.072808 -0.17297 -0.47965 -0.40937 -0.024661 -0.21565 -0.20751 -0.50921 -0.55266 -0.024616 -0.0023553 -0.006505 -0.36669 -0.10108 -0.39642 -0.32368 -0.55596 -0.52706 -0.50133 -0.58326 -0.51424 -0.3819 -0.59361 -0.023155 -0.32013 -0.34182 -0.026878 -0.36646 -0.0087443 0.096089 -0.20945 -0.33641 -0.31611 -0.96767 0.08161 -0.37151 -0.8313 -0.21849 -0.19984 -0.41465 -0.42616 -0.23204 -0.47593 -0.47099 -0.36737 -0.55777 -0.41575 -0.443 -0.33682 -0.47685 -0.33248 -0.45929 -0.0030475 -0.028355 -0.20995 -0.26516 0.010257 -0.84643 -0.29023 -0.4135 -0.56744 -0.2952 -0.28358 -0.54885 -0.074213 -0.46897 -0.15893 -0.46901 -0.0048461 0.11462 0.019091 -0.3729 -0.30028 -0.30326 -0.35783 -0.15152 -0.25346 -0.1307 -0.27786 -0.30392 Deletion Peak 24 - CN values 11q24.3 chr11:123520153-135006516(probes 1043482:1050646) chr11:125538114-135006516(probes 1044842:1050646) chr11:91482435-135006516(probes 1022784:1050646) 6.5401e-15 6.5401e-15 Actual Copy Change Given -0.2926 -0.3711 -0.048059 -0.86373 -0.84238 -0.67609 -0.60514 -0.73433 -0.74038 -0.017391 -0.55211 -0.0044312 -0.32874 -0.55226 -0.10263 -0.01209 -0.23444 -0.88735 -0.32769 -0.097891 0.0026192 -0.40052 -1.1132 -0.31774 -0.38537 -0.41959 -0.46014 -0.31335 -0.4478 -0.30674 -0.81969 0 -0.33234 -0.09261 -0.37098 -1.0785 -0.19174 -1.2185 -0.077478 -0.5426 -0.39822 -1.266 -0.57599 -0.10526 -0.34873 -0.36522 -0.4742 -0.46908 -0.55557 -0.013677 -0.45265 -1.0434 -0.42735 -0.27308 -1.1706 -0.81474 -0.4033 -0.39675 -0.26991 -0.20542 -0.35396 -0.0078863 -0.58137 -0.27392 -0.45982 -0.24399 -0.56863 -0.081487 -0.53859 -0.52512 -0.081738 -0.17297 -0.47965 -0.40937 -0.82326 -0.62474 -0.20751 -0.48785 -0.54925 -0.024616 -0.73598 -0.006505 -0.95021 -0.095648 -0.43083 -0.32368 -0.55596 -1.1413 -1.0373 -0.58326 -0.94363 -0.3819 -0.57778 -0.017529 -0.30909 -1.0488 -0.045862 -0.58628 -0.0087443 0.021043 -0.20945 -0.34676 -0.2965 -0.94154 0.08161 -0.38801 -0.82007 -0.40901 -0.5434 -0.42767 -0.74896 -0.23204 -0.47578 -0.47099 -0.36737 -0.55777 -0.85947 -0.443 -0.33682 -0.47685 -0.33248 -0.43246 -0.3253 -0.027398 -0.28655 -0.26516 0.014609 -0.86633 -0.29023 -0.4135 -0.55727 -0.2952 -0.26059 -0.54885 -0.074213 -0.74708 0 -0.46901 -0.0048461 0.11462 0.0093545 -0.3729 -0.55397 -0.29241 -0.71194 -0.12728 -0.25346 -0.1307 -0.27786 -0.30392 Deletion Peak 25 - CN values 13q34 chr13:114202593-114304134(probes 1180231:1180296) chr13:114236241-114301161(probes 1180258:1180293) chr13:114263720-114284773(probes 1180275:1180284) 0.082827 0.082827 Actual Copy Change Given -0.57979 -0.35829 -0.20012 -0.22453 -0.39179 -0.32426 -0.28913 -0.34274 -0.70041 -0.033132 -0.54285 -0.12015 -0.45544 -0.53662 -0.045228 -0.016161 -0.23517 -0.050235 -0.30134 -0.095516 0.015151 -0.4013 -0.58244 -0.085722 -0.37358 -0.44954 -0.39233 0.0086135 -0.43235 -0.27368 -0.014366 -0.30051 -0.33883 -0.11168 -0.38987 -0.018902 -0.17575 -0.57236 0.071678 -0.53754 -0.091617 -0.60049 -0.61002 -0.12707 -0.34992 -0.34171 -0.075414 0.010564 -0.52828 -0.34939 -0.16472 -0.47102 -0.40318 -0.26444 -0.54721 -0.38716 -0.41707 -0.40418 -0.14091 -0.20423 -0.49892 0.0067228 -0.56972 -0.010784 -0.50474 -0.2566 -0.43994 0.67899 -0.54112 -0.54098 -0.088639 -0.1803 -0.010094 -0.4292 -0.012989 -0.42353 -0.22717 -0.49778 -0.5432 -0.64057 -0.33871 0.075847 -0.06585 -0.091684 -0.18395 -0.24764 -0.019122 -0.50328 -0.48367 -0.35407 -0.42778 -0.36567 -0.5839 -0.023292 -0.32565 -0.62157 -0.081029 -0.27822 -0.0094343 -0.24557 -0.20573 -0.32612 -0.28299 -0.51022 -0.40119 0.087824 -0.39542 -0.17891 -0.1774 -0.42913 -0.42175 -0.25531 -0.20846 -0.44458 -0.35179 -0.58701 -0.40539 -0.46486 -0.088445 -0.96464 -0.30204 -0.42767 -0.31622 -0.019177 -0.099604 -0.26215 -0.61149 -0.43344 -0.26637 -0.37696 -0.55269 -0.2775 -0.20261 -0.55317 -0.0017351 -1.2457 -0.24533 -0.44797 -0.013127 -0.5434 -0.54925 -0.00041585 -0.0038779 -0.29351 -0.3282 -0.14034 -0.23741 0.080312 0.0023581 -0.272 Deletion Peak 26 - CN values 16q23.1 chr16:73174324-82663437(probes 1303468:1310620) chr16:78015651-78104020(probes 1306733:1306750) chr16:72940047-90354753(probes 1303330:1314277) 4.0904e-05 0.023574 Actual Copy Change Given -0.010922 -0.060345 -0.005261 -0.55326 -0.39746 -0.33722 -0.30071 -0.37966 -0.41317 -0.19011 -0.40312 -0.11155 -0.067458 -0.10083 -0.086916 -0.011611 -0.1409 -0.015191 0.26498 -0.10224 0.72298 0.22145 -0.60767 -0.075745 -0.39363 -0.35022 -0.10026 0.64066 -0.54351 0.30969 0.0013868 -0.36 -0.051586 0.25751 -0.041431 -0.050911 -0.15592 0.013632 0.67511 -0.017391 -0.35025 -0.0017693 -0.58347 -0.0050043 -0.35422 -0.41454 -0.46573 -0.018628 -0.56416 -0.0011087 -0.0031859 -0.63779 -0.44512 -0.025209 -0.57533 -0.3943 -0.38078 -0.36986 -0.25926 -0.21293 -0.26733 -0.014366 -0.55877 -0.2732 -0.041159 0.27159 -0.35213 -0.059285 0.030118 0.025952 -0.075078 -0.11535 0.031295 -0.39619 -0.010646 -0.43962 0.017617 -0.0092666 -0.27452 -0.046177 -1.1001 -0.022606 -0.39997 -0.0063668 -0.085324 -0.012438 -0.049695 -0.036946 -0.0192 -0.17866 -0.49861 -0.017529 0.051245 -0.033132 0.25324 0.022304 -0.099201 -0.047531 -0.01852 -0.016418 -0.21317 -0.084793 -0.081339 -0.49673 0.051245 -0.089567 -0.40694 0 -0.20272 -0.2102 -0.12444 -0.25359 -0.014916 -0.49986 -0.38812 0.0070826 -0.41969 -0.45236 -0.034976 -0.060942 -0.02384 -0.46525 -0.018628 0.81337 -0.098418 0.0020805 -0.58451 -0.023155 -0.31249 -0.33728 0.039054 -0.31225 0.13066 -0.039258 -0.0093386 -0.095485 0.20564 0 0.015172 -0.50297 -0.57071 -0.3819 -0.017116 0.14439 -0.025483 -0.15754 -0.08413 0.0076392 0 -0.24411 Deletion Peak 27 - CN values 16q23.3 chr16:74323940-90354753(probes 1304314:1314277) chr16:83979992-84164575(probes 1311831:1311868) chr16:72940047-90354753(probes 1303330:1314277) 0.00015997 0.0066419 Actual Copy Change Given -0.010922 -0.060345 -0.005261 -0.55326 -0.39746 -0.33722 -0.30071 -0.37966 -0.41317 -0.19011 -0.40312 -0.11155 -0.067458 -0.14772 -0.086916 -0.011611 -0.1409 -0.015191 -0.32982 -0.10224 0.73097 0.23009 -0.60767 -0.075745 0.026935 -0.43209 -0.10026 -0.49819 -0.54351 0.30969 0.010146 -0.36 -0.051586 0.25751 -0.041431 -0.14644 -0.15592 0.013632 0.68012 -0.017391 -0.31044 -0.0017693 -0.58347 -0.0050043 -0.35422 -0.41454 -0.46573 -0.018628 -0.077878 -0.0011087 -0.0031859 0.028271 -0.44512 -0.025209 -0.57533 -0.3943 -0.38078 -0.36986 -0.25926 -0.21293 -0.30874 -0.014366 -0.55877 -0.2732 -0.041159 0.27159 -0.35213 -0.059285 0.030118 0.025952 -0.075078 -0.11535 0.031295 -0.39619 -0.035448 -0.43962 0.017617 -0.0092666 -0.27452 -0.046177 -0.36295 -0.022606 -0.39997 -0.0063668 -0.085324 -0.012438 -0.049695 -0.036946 -0.0192 -0.20788 -0.49861 -0.017529 0.051245 -0.033132 0.25324 0.022304 -0.099201 -0.047531 -0.01852 -0.016418 -0.21317 -0.084793 -0.081339 -0.49673 0.051245 -0.089567 -0.40694 0 -0.20272 -0.2102 -0.12444 -0.25359 -0.014916 -0.49986 -0.41509 0.0070826 -0.92361 -0.45236 -0.034976 -0.060942 -0.02384 -0.46525 -0.018628 0.79162 -0.098418 0.0020805 -0.61326 -0.012438 -0.31249 -0.33728 0.039054 -0.33546 0.13066 -0.039258 -0.0093386 -0.095485 -0.28216 0 0.022501 -0.55276 -0.57071 -0.3819 -0.017116 0.14439 -0.025483 -0.15754 -0.08413 0.0076392 0 -0.24411 Deletion Peak 28 - CN values 18p11.32 chr18:1-893521(probes 1350991:1351033) chr18:1-330689(probes 1350991:1350991) chr18:1-2952641(probes 1350991:1351939) 0.00046313 0.00046313 Actual Copy Change Given -0.27965 0.010424 -0.1985 -0.513 -0.3881 -0.32507 -0.59728 -0.3564 -0.361 -0.077345 0.48691 -0.10329 -0.25624 -0.52667 -0.18055 0.019503 -0.22806 0.046417 -0.32704 -0.10906 0.00012213 -0.37076 -0.57611 -0.29957 -0.37087 -0.43745 -0.45822 -0.34433 -0.48071 -0.27929 -0.0073339 -0.64208 -0.32263 -0.10959 -0.37831 -0.47913 0.47152 -0.57585 -0.076543 -0.53042 -0.29573 -0.60262 -0.56906 -0.11587 -0.34357 -0.36703 -0.44583 -0.46355 0.0015255 0 -0.14772 -0.4668 -0.42264 -0.25345 -0.55324 -0.3875 -0.40562 -0.38649 -0.067726 -0.44889 -0.34171 -0.154 -0.55977 -0.27619 0 -0.24399 -0.44545 -0.071087 -0.52863 -0.53885 -1.0248 -0.23043 -0.49066 -0.41256 -0.018639 -0.44931 -0.22262 -0.489 -0.54451 -0.010508 -0.34446 -0.0013858 0.15502 -0.095252 -0.16993 -0.24861 -0.53825 -0.51342 0.032257 0.045454 -0.4504 -0.36669 -0.59331 0.0040243 -0.31657 -0.7147 0.0015709 -0.0077482 -0.2588 -0.25322 -0.41794 -0.68469 -0.066386 -0.45469 -0.27774 -0.28905 -0.38481 -0.18118 -0.18244 -0.12174 -0.14628 -0.23461 -0.46961 -0.42429 -0.36397 -1.1634 -0.89848 -0.43792 -0.0014596 -0.46232 -0.31517 0.0016642 -0.32042 -0.03885 -0.1071 -0.26324 -0.5718 -0.40838 -0.28227 -0.41976 -0.55166 -0.29059 -0.2636 -0.5348 -0.00034956 -0.38806 -0.25455 -0.45151 0.012795 -0.51802 -0.5291 -0.3634 0.031295 -0.82849 -0.33837 -0.31005 -0.24253 -0.12992 -0.0016629 -0.29532 Deletion Peak 29 - CN values 18q22.3 chr18:61814593-78077248(probes 1386004:1393398) chr18:72254868-72266469(probes 1390286:1390290) chr18:56433315-78077248(probes 1382370:1393398) 0.00010442 0.00010442 Actual Copy Change Given -0.28192 -0.3567 -0.1985 -0.513 -0.3881 -0.32507 -0.29567 -0.32484 -0.32373 -0.10102 -0.55321 -0.10329 -0.25624 -0.60373 -0.16752 0.017264 -0.24227 0.046417 -0.32704 -0.10906 0.00012213 -0.40628 -0.59609 -0.319 -0.38066 -0.43745 -0.45822 -0.36644 -0.52711 -0.2856 -0.83381 -0.32135 -0.32263 -0.10959 -0.37121 -0.49517 0.10162 -0.57585 -0.13091 -0.52716 -0.39713 -0.60262 -1.2216 -0.12525 -0.34357 -0.3668 -0.45962 -1.094 -0.014503 -0.015604 -0.14772 -0.46875 -0.42276 -0.012851 -1.1765 -0.3875 -0.40562 -0.39853 -0.067726 -0.48687 -0.36238 -0.154 -0.55977 -0.27619 0 -0.24168 -0.49413 -0.071087 -0.52863 -0.54941 -0.10749 -0.17284 -0.48334 -0.41256 -0.00027724 -0.42691 -0.22262 -0.49568 -0.54451 -0.010508 -0.34446 -0.0013858 0.15502 -0.097649 -0.16993 -0.24861 -0.53825 -0.52685 -0.47904 -1.1088 -0.4504 -0.38568 -0.59331 -0.021647 -0.33606 -0.76081 -0.050461 -0.011611 -0.27383 -0.25322 -0.43798 -0.32681 -0.066386 -0.45469 -0.29509 -0.37905 -0.3953 -0.18118 -0.19379 -0.12174 -0.14628 -0.23461 -0.20796 -0.45715 -0.37479 -0.55908 -0.41107 -0.43792 -0.0014596 -0.46232 -0.31517 -0.43453 -0.32419 -0.035721 -0.1071 -0.26324 -0.56634 -0.43246 -0.29426 -0.44043 -0.58338 -0.29059 -0.26753 -0.5348 -0.00034956 -0.41176 -0.25455 -0.45214 0.012795 -0.56624 -0.57299 -0.3634 -0.0088526 -0.28291 -0.7072 -0.30427 -0.24253 -0.12992 -0.0016629 -0.29532 Deletion Peak 30 - CN values 19q13.33 chr19:48083041-48217922(probes 1412741:1412808) chr19:48104223-48214989(probes 1412756:1412807) chr19:48150708-48154302(probes 1412782:1412783) 0.0043433 0.032604 Actual Copy Change Given -0.045364 0.22684 -0.0029091 0.037076 -0.016761 0.24031 -0.027354 -0.053206 0.2223 -0.058327 -0.442 -0.049154 -0.25092 -0.46491 0.00097064 -0.04726 -0.17091 -0.023703 -0.30803 0.092025 -0.062108 -0.3943 -0.12095 -0.30721 -0.022606 -0.16319 -0.14284 -0.33514 -0.0080244 -0.26504 -0.060748 -0.36011 -0.36499 -0.1246 -0.37516 -0.48575 -0.154 -0.54875 -0.093139 -0.12694 -0.33681 -0.58674 -0.5869 -0.07361 0.092421 0.064082 0.077932 -0.50121 0.34291 -0.021235 0.051245 -0.051653 -0.03095 -0.032587 -0.043294 -0.029311 -0.40639 -0.39764 -0.32356 -0.1595 -0.43731 0.13273 -0.023703 -0.25866 -0.082269 -0.27248 -0.45372 -0.082551 -0.5513 -0.53875 -0.10473 -0.1698 -0.4256 -0.42789 0.64689 -0.10775 -0.15253 -0.48764 -0.27571 -0.064663 -0.026851 -0.016841 0.036088 -0.020824 -0.06585 0.201 0.36772 -0.10736 -0.065068 -0.0083005 -0.068395 -0.045906 -0.60574 0.58077 -0.32391 0.0037465 -0.042065 0.18828 0.22111 -0.052666 -0.015741 -0.34925 0.024127 -0.043466 -0.33387 -0.32263 -0.034359 -0.024251 0.12815 0.011539 -0.14461 -0.22221 -0.032041 0.3486 0.2533 -0.56684 -0.026917 -0.0072393 0.1876 0.29733 0.24062 0.29041 -0.12966 0.62188 0.00458 -0.00055444 -0.21923 0.34031 -0.032178 -0.36912 -0.5716 0.24809 -0.29 -0.06424 0.052167 0.44025 -0.25612 -0.049071 0.041458 0.015028 -0.56107 0.12741 -0.046363 0.14498 0.24 0.13456 -0.040752 0.017404 0.068952 0.38982 Deletion Peak 31 - CN values 19q13.42 chr19:42754638-59128983(probes 1410634:1417097) chr19:55000922-55029446(probes 1415194:1415204) chr19:51837214-59128983(probes 1414214:1417097) 0.0046229 0.082827 Actual Copy Change Given -0.045364 0.22684 -0.0029091 0.037076 -0.011668 0.21714 -0.027354 -0.053206 0.2223 -0.058327 -0.442 -0.049154 -0.25092 -0.46491 0.00097064 -0.04726 -0.17091 -0.023703 -0.30803 0.092025 -0.062108 -0.39252 -0.56157 -0.30721 -0.022606 -0.16319 -0.14284 -0.31937 -0.0080244 -0.26504 -0.060748 -0.36011 -0.36499 -0.1246 -0.37516 -0.48575 -0.154 -0.54875 -0.099209 -0.12694 -0.33681 -0.58674 -0.5869 -0.07361 0.092421 0.064082 0.077932 -0.50121 0.34291 -0.021235 0.051245 -0.051653 -0.03095 -0.032587 -0.043294 -0.029311 -0.40639 -0.39764 -0.32356 -0.1595 -0.43731 0.13273 -0.023703 -0.25866 -0.082269 -0.27248 -0.45372 -0.082551 -0.55802 -0.53875 -1.0035 -0.1698 -0.4256 -0.42789 0.64689 -0.10775 -0.15253 -0.48764 -0.54128 -0.064663 -0.026851 -0.016841 0.036088 -0.021647 -0.06585 0.201 0.36772 -0.10736 -0.065068 -0.0083005 -0.068395 -0.045906 -0.60574 0.58077 -0.32391 0.0037465 -0.042065 0.18828 0.22111 -0.052666 -0.015741 -0.34925 0.024127 -0.043466 -0.33387 -0.32263 -0.034359 -0.024251 0.12815 0.011539 -0.14461 -0.22221 -0.032041 0.3486 0.2533 -0.092742 -0.026917 -0.0072393 0.1876 0.29733 0.24062 0.29041 -0.12966 0.62188 0.00458 -0.00055444 -0.21923 0.34031 -0.032178 -0.36912 -0.5716 0.24809 -0.29 -0.06424 0.052167 0.44025 -0.25612 -0.049071 0.041458 0.015028 -0.56107 0.12741 -0.046363 0.14498 0.24 0.13456 -0.040752 0.017404 0.068952 0.38982 Deletion Peak 32 - CN values 20p12.1 chr20:1-16555385(probes 1417098:1427266) chr20:13965126-16036135(probes 1425674:1426789) chr20:15467744-15471214(probes 1426232:1426233) 0.14117 0.13915 Actual Copy Change Given -0.0059522 -0.056173 -0.00069049 -0.2005 0.03476 0.075559 0.012142 0 -0.028421 0.29294 0.031228 0.059937 0.073977 -0.50152 -0.018353 -0.0094046 -0.044783 -0.022469 0.02525 0.10074 -0.016858 -0.40351 -0.56117 0.17845 -0.38672 0.0022193 0.014888 0.034254 0.0040243 0.35349 0.79762 -0.32182 0.093185 0.69142 0.045991 0 -0.24021 -0.58765 0.74233 0 -0.71335 -0.59563 0.059169 -0.13355 0.1511 0.15009 0.014397 -0.496 0.46041 0.34453 -0.0008316 0.042237 0 0.24956 0.53332 0.016286 -0.035515 0.055943 0.051956 0.37808 0.2456 -0.0042929 -0.56147 0.12388 0.33545 0.26844 0.030029 0.65018 -0.53443 0.020704 0.12667 0.00097064 0.028763 -0.0081088 -0.018765 0 -0.45902 -0.49778 0.029044 -0.024524 0.0055529 -0.010784 0.26028 -0.0027707 -0.034376 0.18919 0.25168 -0.03245 -0.39488 0.24622 -0.014503 0.0036076 0.036935 0.6805 -0.33653 0.18904 -0.0071506 -0.033132 -0.011365 -0.007472 -0.20523 0.0011093 -0.01088 0.0069435 0.062223 0.16505 -0.39608 0.00083195 0.13524 0.011261 0.39649 -0.22578 0.013988 -0.0088526 -0.017391 0.00091719 -0.41575 0.0087621 -0.021034 -0.041491 -0.020412 -0.44566 -0.011335 0.80305 0.0467 0.0090312 0.0055529 0.0012481 -0.014916 -0.32989 -0.10211 -0.13355 0.19817 -0.0034627 0.063864 0.23969 0.19954 -0.46039 0.0091705 0.24887 0.058367 -0.037626 0.15278 0.17357 -0.34824 0.0037981 -0.011335 0.010006 0.0024969 -0.16115 Deletion Peak 33 - CN values Xp21.1 chrX:32117084-32611359(probes 1504247:1504552) chrX:30870233-34033668(probes 1503587:1504807) chrX:32057877-32062998(probes 1504198:1504199) 0.026863 0.028318 Actual Copy Change Given -0.082668 0.09543 0.031436 -0.081339 0.041704 -0.0098185 0.10545 0.014409 -0.025139 0.27131 -0.10059 0.020921 -0.030404 -0.047666 0.023847 0.2058 -0.027496 0.19553 -0.056754 0.16505 -0.12994 -0.094193 -0.21094 0.071822 -0.085457 -0.00069303 -0.035312 0.074408 -0.024251 0.00458 1.1108 -0.56674 0.16385 0.15203 -0.045906 -0.64856 0 -0.096412 0.15129 -0.14219 0.12366 -0.094561 0.44946 -0.016636 0.0048207 0 -0.12011 -0.12586 0.90996 0.15636 0 -0.15598 -0.07218 0.084498 -0.16507 0.31482 -0.090096 -0.087314 -0.026851 0.058358 -0.065984 0.068808 -0.17689 0.02511 0.069812 0 -0.16154 0.27709 0.251 -0.23202 0.21978 -0.28632 -0.078677 -0.080141 0.3017 0.30122 -0.07005 -0.15745 -0.16307 0.31932 -0.116 0.087373 0.0048579 -0.015349 0.0073609 0.14251 0.023246 -0.02573 -0.13007 -0.0035638 -0.073476 -0.032314 -0.22427 0.28327 0 -0.36635 0.30734 -0.0029091 0.1143 0.0033299 -0.031768 -0.016429 -0.014228 -0.10513 -0.07036 0.032297 -0.040706 -0.028081 0.0081959 0.031155 0 -0.0044467 -0.012024 0.0020805 -0.020687 -0.14425 -0.10718 -0.085499 0.06515 0.074489 0 0.085221 -0.046312 0.31274 0.0065262 -0.025072 -0.12082 0.17272 -0.071071 -0.063237 -0.05398 -0.035312 0 -0.029038 0.024756 -0.01815 0.043015 -0.11317 0.10614 -0.12215 -0.16985 -0.025756 0.035806 -0.034134 -0.042937 -0.0064536 -0.00027724 -0.0051227 0.057511 -0.42134 Deletion Peak 34 - CN values Xq27.3 chrX:106870804-155270560(probes 1532086:1553768) chrX:142955907-142970575(probes 1548637:1548638) chrX:142954985-142971816(probes 1548634:1548640) 0.08422 0.08422 Actual Copy Change Given -0.082668 0.010557 0.031436 -0.081339 -0.6543 0.041175 -0.3611 0.023286 -0.00062175 0.26059 -0.10059 0.022725 0.079447 -0.053746 0.023847 0.21299 -0.014877 0.28675 -0.054016 0.16505 -0.12938 -0.094193 -0.10972 0.02779 -0.091221 -0.00069303 -0.035312 0 -0.04211 0 0.15935 -0.027398 -0.41882 0.14429 -0.045906 0.38866 0 -0.080217 0.24218 -0.14219 0.29414 -0.077447 -0.33368 -0.024935 0.05448 0 -0.11149 -0.13212 -0.04983 0.15636 0 -0.15598 -0.07218 0.087245 -0.15249 -0.45244 -0.096308 -0.090484 -0.026851 0.12992 -0.065984 0.068808 -0.19537 0.02511 0.069812 0.008892 -0.16154 0.27709 -0.40588 -0.23202 0.40144 0.32318 -0.067125 -0.056395 0.31562 -0.30275 -0.065645 -0.18169 -0.17082 0.28728 -0.094531 0.09188 0 -0.006505 0 0.064368 0.045991 -0.085988 -0.13007 -0.017116 -0.073476 -0.034631 -0.2217 0.26497 0.0011093 0.048972 0.26408 -0.0029091 0.1143 -0.012576 -0.038842 -0.098418 -0.014228 -0.14599 -0.055364 0.033267 -0.040706 -0.028081 0 0.031155 -0.031054 0 -0.012024 -0.87876 0.0026201 -0.12832 -0.11066 -0.085499 0.06515 0.0034413 0.017963 0.072188 -0.062629 0.31274 0.020063 -0.025072 -0.10579 0.16944 -0.071071 -0.053952 -0.11952 -0.013815 0 -0.029038 0.024756 0.015028 -0.029994 -0.14155 0.10483 -0.094064 -0.082934 -0.1067 0.035806 -0.019088 -0.017803 -0.01789 0.020203 -0.0051227 0.057511 0.16385