Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-RZ-AB0B-01A-11D-A39V-01	TCGA-V3-A9ZX-01A-11D-A39V-01	TCGA-V3-A9ZY-01A-11D-A39V-01	TCGA-V4-A9E5-01A-11D-A39V-01	TCGA-V4-A9E7-01A-11D-A39V-01	TCGA-V4-A9E8-01A-11D-A39V-01	TCGA-V4-A9E9-01A-11D-A39V-01	TCGA-V4-A9EA-01A-11D-A39V-01	TCGA-V4-A9EC-01A-11D-A39V-01	TCGA-V4-A9ED-01A-11D-A39V-01	TCGA-V4-A9EE-01A-11D-A39V-01	TCGA-V4-A9EF-01A-21D-A39V-01	TCGA-V4-A9EH-01A-11D-A39V-01	TCGA-V4-A9EI-01A-11D-A39V-01	TCGA-V4-A9EJ-01A-11D-A39V-01	TCGA-V4-A9EK-01A-11D-A39V-01	TCGA-V4-A9EL-01A-11D-A39V-01	TCGA-V4-A9EM-01A-11D-A39V-01	TCGA-V4-A9EO-01A-12D-A39V-01	TCGA-V4-A9EQ-01A-11D-A39V-01	TCGA-V4-A9ES-01A-11D-A39V-01	TCGA-V4-A9ET-01A-11D-A39V-01	TCGA-V4-A9EU-01A-11D-A39V-01	TCGA-V4-A9EV-01A-11D-A39V-01	TCGA-V4-A9EW-01A-11D-A39V-01	TCGA-V4-A9EX-01A-11D-A39V-01	TCGA-V4-A9EY-01A-11D-A39V-01	TCGA-V4-A9EZ-01A-11D-A39V-01	TCGA-V4-A9F0-01A-11D-A39V-01	TCGA-V4-A9F1-01A-11D-A39V-01	TCGA-V4-A9F2-01A-11D-A39V-01	TCGA-V4-A9F3-01A-11D-A39V-01	TCGA-V4-A9F4-01A-11D-A39V-01	TCGA-V4-A9F5-01A-11D-A39V-01	TCGA-V4-A9F7-01A-11D-A39V-01	TCGA-V4-A9F8-01A-11D-A39V-01	TCGA-VD-A8K7-01B-11D-A39V-01	TCGA-VD-A8K8-01A-11D-A39V-01	TCGA-VD-A8K9-01A-11D-A39V-01	TCGA-VD-A8KA-01B-11D-A39V-01	TCGA-VD-A8KB-01A-11D-A39V-01	TCGA-VD-A8KD-01A-11D-A39V-01	TCGA-VD-A8KE-01A-11D-A39V-01	TCGA-VD-A8KF-01A-11D-A39V-01	TCGA-VD-A8KG-01A-11D-A39V-01	TCGA-VD-A8KH-01A-11D-A39V-01	TCGA-VD-A8KI-01A-11D-A39V-01	TCGA-VD-A8KJ-01A-11D-A39V-01	TCGA-VD-A8KK-01A-11D-A39V-01	TCGA-VD-A8KL-01A-11D-A39V-01	TCGA-VD-A8KM-01A-11D-A39V-01	TCGA-VD-A8KN-01A-11D-A39V-01	TCGA-VD-A8KO-01A-11D-A39V-01	TCGA-VD-AA8M-01A-11D-A39V-01	TCGA-VD-AA8N-01A-11D-A39V-01	TCGA-VD-AA8O-01A-11D-A39V-01	TCGA-VD-AA8P-01A-11D-A39V-01	TCGA-VD-AA8Q-01A-11D-A39V-01	TCGA-VD-AA8R-01A-11D-A39V-01	TCGA-VD-AA8S-01B-11D-A39V-01	TCGA-VD-AA8T-01A-11D-A39V-01	TCGA-WC-A87T-01A-11D-A39V-01	TCGA-WC-A87U-01A-11D-A39V-01	TCGA-WC-A87W-01A-11D-A39V-01	TCGA-WC-A87Y-01A-11D-A39V-01	TCGA-WC-A880-01A-11D-A39V-01	TCGA-WC-A881-01A-12D-A39V-01	TCGA-WC-A882-01A-11D-A39V-01	TCGA-WC-A883-01A-12D-A39V-01	TCGA-WC-A884-01A-11D-A39V-01	TCGA-WC-A885-01A-11D-A39V-01	TCGA-WC-A888-01A-11D-A39V-01	TCGA-WC-A88A-01A-11D-A39V-01	TCGA-WC-AA9A-01A-11D-A39V-01	TCGA-WC-AA9E-01A-11D-A39V-01	TCGA-YZ-A980-01A-11D-A39V-01	TCGA-YZ-A982-01A-11D-A39V-01	TCGA-YZ-A983-01A-11D-A39V-01	TCGA-YZ-A984-01A-11D-A39V-01	TCGA-YZ-A985-01A-11D-A39V-01	
Amplification Peak 1	6p24.3 	chr6:1-18226822(probes 567578:579566)            	chr6:9449861-9975513(probes 573667:574037)        	chr6:1-33412156(probes 567578:586943)            	2.0409e-06	 2.0409e-06		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	2	2	0	1	2	2	1	0	0	0	0	1	2	2	0	2	1	0	0	2	0	0	2	1	1	1	0	0	1	1	2	0	2	0	2	0	2	2	2	0	2	0	2	0	1	2	0	1	1	1	2	0	0	0	0	0	0	2	0	1	2	2	0	2	2	0	0	1	2	0	2	0	2	0	2	2	0	0	
Amplification Peak 2	8q24.22	chr8:107863152-146364022(probes 803024:825683)	chr8:133991650-134011691(probes 819375:819391)	chr8:95570546-146364022(probes 796140:825683)  	8.8879e-13	 8.8879e-13		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	2	0	2	2	1	2	2	0	1	2	2	0	2	2	1	2	2	2	2	0	2	2	2	1	2	0	2	2	2	1	2	2	2	0	2	0	2	2	2	2	2	0	2	2	1	2	2	2	2	2	2	0	0	2	1	2	0	0	1	2	0	0	0	2	0	2	1	2	0	2	2	2	2	1	1	1	0	1	0	
Amplification Peak 3	17q25.3	chr17:52926827-81195210(probes 1336268:1351038)	chr17:79976479-80215585(probes 1350674:1350702)	chr17:79976479-80219339(probes 1350674:1350705)	0.054583	   0.054583		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	1	0	1	0	
Deletion Peak  1	1p36.12	chr1:19073360-24108626(probes 8489:11361)           	chr1:23031452-23252263(probes 10735:10910)          	chr1:6873067-68702403(probes 2229:37018)             	0.00034394	 0.00034394		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	1	1	1	0	0	0	0	1	1	0	1	0	0	0	
Deletion Peak  2	1p12   	chr1:117308686-120151587(probes 65624:67302)      	chr1:119910490-120058920(probes 67132:67264)      	chr1:119910468-120059499(probes 67131:67265)      	0.061261	   0.062985		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	1	1	0	1	0	0	0	
Deletion Peak  3	2q37.2 	chr2:225871674-243199373(probes 249786:259424)    	chr2:236401743-237037208(probes 255907:256294)    	chr2:231660046-242228732(probes 253200:259284)    	0.024639	   0.024232		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  4	3p25.2 	chr3:12809221-12884390(probes 265733:265776)        	chr3:12826933-12917206(probes 265744:265787)        	chr3:12863387-12871816(probes 265766:265767)        	0.086468	   0.086468		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	0	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  5	3p25.1 	chr3:13545239-13692618(probes 266194:266272)        	chr3:13569003-13687698(probes 266207:266269)        	chr3:13643641-13643977(probes 266239:266240)        	0.013477	   0.013477		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	0	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  6	3p22.2 	chr3:38314751-38389497(probes 280792:280833)        	chr3:38317489-38365440(probes 280793:280820)        	chr3:38346780-38356025(probes 280804:280816)        	0.0051421	  0.0050023		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	0	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  7	3p14.2 	chr3:58651854-67050202(probes 291997:297173)        	chr3:59702822-61238217(probes 292651:292849)        	chr3:61116010-61118796(probes 292751:292752)        	0.09134	   0.090113		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  8	3q24   	chr3:142896601-143694372(probes 337635:338024)    	chr3:142927239-143570038(probes 337672:337953)    	chr3:143374387-143377572(probes 337813:337814)    	0.0049422	  0.0049422		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  9	3q29   	chr3:194238890-194369918(probes 364517:364564)    	chr3:194294752-194369918(probes 364537:364564)    	chr3:194331876-194335047(probes 364551:364552)    	0.023516	   0.023516		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak 10	6q25.2 	chr6:142365089-158863471(probes 646622:657284)    	chr6:152440226-152962152(probes 653215:653601)    	chr6:142549788-158839026(probes 646698:657270)    	0.0054289	   0.023516		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	1	0	1	1	0	1	1	0	0	1	1	1	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	
Deletion Peak 11	6q27   	chr6:166922042-167347293(probes 662292:662620)    	chr6:166821252-167347293(probes 662216:662620)    	chr6:167001025-167071947(probes 662373:662432)    	0.0049422	   0.046377		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	1	0	0	0	1	0	0	1	0	0	1	0	0	0	0	1	1	0	1	1	0	1	1	0	0	1	0	1	0	0	0	0	1	0	1	0	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	
Deletion Peak 12	8p11.22	chr8:38312793-38587017(probes 766547:766674)        	chr8:38361601-38388011(probes 766560:766576)        	chr8:38376403-38379249(probes 766569:766570)        	0.046377	   0.046377		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	1	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	
Deletion Peak 13	11p15.1	chr11:16623557-16799846(probes 983701:983767)      	chr11:16623907-16778786(probes 983702:983751)      	chr11:16709137-16721543(probes 983727:983728)      	4.661e-23	  4.661e-23		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 14	11q24.3	chr11:114997555-133313263(probes 1037502:1050260)	chr11:128768939-128815336(probes 1047404:1047452)	chr11:115065439-132449843(probes 1037554:1049941)	0.023516	   0.023516		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	
Deletion Peak 15	16q12.1	chr16:47735031-48202502(probes 1288092:1288315)    	chr16:48114144-48194022(probes 1288266:1288310)    	chr16:48167575-48173058(probes 1288289:1288290)    	0.016325	   0.024232		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	1	1	0	0	0	0	0	
Deletion Peak 16	16q23.3	chr16:82873004-83542835(probes 1310831:1311400)    	chr16:82658729-83830499(probes 1310667:1311778)    	chr16:83402886-83405550(probes 1311223:1311224)    	0.058855	   0.086468		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	1	1	0	0	0	0	0	
Deletion Peak 17	16q24.3	chr16:88525832-90354753(probes 1314294:1314325)    	chr16:89304312-90354753(probes 1314295:1314325)    	chr16:89367002-90354753(probes 1314310:1314325)    	0.12091	     0.1095		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	
Deletion Peak 18	17q12  	chr17:27397975-51318309(probes 1324823:1335294)    	chr17:37020981-37081706(probes 1329052:1329081)    	chr17:37042488-37072191(probes 1329056:1329076)    	0.22482	    0.22482		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 1 - CN values	6p24.3 	chr6:1-18226822(probes 567578:579566)            	chr6:9449861-9975513(probes 573667:574037)        	chr6:1-33412156(probes 567578:586943)            	2.0409e-06	 2.0409e-06		Actual Copy Change Given	0.0042065	0.63074	0.99426	1.9853	0.010982	0.76696	1.9851	1.0407	0.46144	0.015447	-0.016154	0.010564	-0.018627	0.81386	1.7583	1.5813	0.017525	0.94164	0.61679	0.012615	0.0088728	1.9207	0.031218	0.0030522	0.93427	0.70626	0.74765	0.76427	0.011727	0.02806	0.84593	0.62242	1.5988	0.026092	0.97131	0.027216	1.7089	0.013074	2.3481	1.8158	1.5759	0.013911	0.96689	0.0049969	3.4434	0.0011093	0.89166	1.7073	0.013772	0.68229	0.47084	0.14384	1.0165	0.053948	0.0069435	0.0095883	0.017404	-0.0013858	0.0026357	3.6569	0.015028	0.89648	1.0748	0.95775	0.0069435	0.9229	0.94431	0.027778	0.0041632	0.87169	1.5301	0.013353	0.91238	0.0077783	2.3358	0.00597	1.2519	0.96953	-0.011005	0.027076	
Amplification Peak 2 - CN values	8q24.22	chr8:107863152-146364022(probes 803024:825683)	chr8:133991650-134011691(probes 819375:819391)	chr8:95570546-146364022(probes 796140:825683)  	8.8879e-13	 8.8879e-13		Actual Copy Change Given	2.8747	2.8095	-0.005814	0.95591	2.6098	0.74121	1.0546	3.034	-0.0023553	0.17016	2.2132	1.4991	-0.0088526	3.6569	0.92287	0.80442	3.1572	1.9289	1.1928	1.5197	0.0026357	1.8788	3.0334	2.1867	0.18737	3.0476	-0.0008316	1.0608	0.90036	2.3387	0.82706	1.601	0.91359	2.1641	-0.0031859	1.2036	0.0012481	2.3289	2.3301	1.7627	1.9512	1.0697	-0.0026503	1.0281	1.7314	0.87966	2.4175	1.3946	1.0015	1.341	1.3587	1.8519	-0.0020158	-0.0019399	1.597	0.58256	1.0097	-0.0069195	0.0013868	0.88971	0.96884	0	0.0015255	0.020763	1.5811	0.00069327	1.7692	0.67011	3.0354	-0.00069303	1.0287	1.3097	1.7389	0.99063	0.70513	0.47942	0.63153	0.00018632	0.63434	0.0068044	
Amplification Peak 3 - CN values	17q25.3	chr17:52926827-81195210(probes 1336268:1351038)	chr17:79976479-80215585(probes 1350674:1350702)	chr17:79976479-80219339(probes 1350674:1350705)	0.054583	   0.054583		Actual Copy Change Given	0.0351	-0.0098383	0.012655	0.066778	-0.065313	0.60257	-0.029311	0.015028	0.00027728	-0.034086	0.020623	-0.011198	-0.045635	-0.00075872	0.88643	0.85957	-0.0085952	0.03273	0.53186	0.0039844	-0.020961	0.87667	0.029107	0.0050521	-0.013953	-0.0083005	0.0030522	0.084932	-0.031176	-0.056981	-0.051653	-0.016017	-0.014228	0.0066653	-0.0091286	0.023005	-0.0069195	-0.0027707	0.001803	0.065621	0.88166	0.016425	0.03734	-0.033132	0.0027745	0.03031	-0.058327	0.0061937	-0.024251	0.64463	-0.0084385	-0.0073339	-0.0055375	0.18677	-0.027124	0.50481	-0.015604	0.0058309	0	0.87587	0.016286	-0.013264	-0.0027707	-0.0026322	0.00041593	-0.0071958	0.040934	0.011261	0.023847	2.7846	0.84968	-0.0038779	-0.006505	0.058937	-0.034904	-0.0067813	0.63335	-0.009909	0.58782	-0.038306	
Deletion Peak  1 - CN values	1p36.12	chr1:19073360-24108626(probes 8489:11361)           	chr1:23031452-23252263(probes 10735:10910)          	chr1:6873067-68702403(probes 2229:37018)             	0.00034394	 0.00034394		Actual Copy Change Given	-0.46865	-0.00097017	-0.0013858	0.09188	-1.0444	-0.10824	-0.038372	-0.00041585	-0.0016629	0	-0.69604	0	-0.076636	-0.0006244	-0.021515	0.004719	-0.00029591	0.054402	-0.64612	-0.83768	-1.0234	-0.027265	0.032626	-0.012851	-0.24299	-0.0033243	0.0012481	-1.0055	-0.93693	-0.076812	-0.0029091	-0.00097017	-0.011859	-1.1765	-0.0033243	-0.97217	-0.0047079	-0.020001	-0.0020784	-1.0329	-0.023099	-0.7715	-0.0025118	-0.0020784	0	-0.95919	-0.0056512	-0.0064208	-0.0019399	-0.0051707	-0.016567	0.0030522	-0.0008316	0.035806	-0.010791	-0.62209	-0.9892	0.0080567	-0.001422	-0.0011087	-1.0696	-0.0023553	-0.0018014	-1.0475	0.0016642	-0.0023553	-0.94193	-0.66281	-0.89488	-0.0077482	-0.007472	-0.020275	-0.007472	-1.0429	-0.91987	-0.0098185	-0.65389	-0.004522	-0.017612	0	
Deletion Peak  2 - CN values	1p12   	chr1:117308686-120151587(probes 65624:67302)      	chr1:119910490-120058920(probes 67132:67264)      	chr1:119910468-120059499(probes 67131:67265)      	0.061261	   0.062985		Actual Copy Change Given	-0.46865	-0.00097017	-0.0013858	-0.018216	0.01419	-0.023018	0	-0.00041585	-0.0016629	0	-0.44523	0	-0.015054	-0.0006244	-0.0071575	0.004719	-0.00029591	0.0096138	-0.64612	-0.80884	-1.1261	-0.027265	0.0054764	-0.012851	-0.058462	-0.91372	0.0012481	-1.0055	-0.023382	0.011381	-0.0029091	-0.00097017	0.211	-1.0744	-0.0022168	-0.97217	-0.0047079	0	-0.0037395	-0.97169	-0.015405	0.0097276	-0.0025118	-0.0020784	0	0.014051	-0.0056512	-0.0064208	-0.0019399	-0.0051707	-0.0011087	0.0030522	-0.0008316	0.0042449	0	-0.5796	-0.98948	0.0027745	-0.001422	-0.00068732	0.010703	-0.0023553	-0.0018014	-1.0011	0.0016642	-0.0023553	0.0039263	-0.66281	-0.90419	0.14251	-0.007472	-0.0011087	-0.0049844	-1.0398	-0.91244	-0.0098185	-0.65389	-0.004522	-0.01004	0	
Deletion Peak  3 - CN values	2q37.2 	chr2:225871674-243199373(probes 249786:259424)    	chr2:236401743-237037208(probes 255907:256294)    	chr2:231660046-242228732(probes 253200:259284)    	0.024639	   0.024232		Actual Copy Change Given	-0.0033243	0.029274	0.022585	-0.012091	-0.076984	0.3269	0.0041632	0.0029133	-0.0036011	0.0098669	-0.0033243	0.0095883	0.016705	-0.019658	0.0041432	-0.97793	-0.0026509	0.0037719	-0.020908	-0.003444	-0.025718	0.011954	-0.0096185	0.0016287	0.019363	0.0020805	0.0034687	-0.016017	0.016334	0.019783	0.014888	0.015587	0.0027745	-0.023106	0.0015255	-0.012576	0.0048579	-0.0011087	-0.98681	-0.013023	-0.046544	-0.00097017	0.010267	0.0040243	0.00597	-0.015466	0.026373	0.47797	0.0041632	0.52444	0.003191	-0.00013862	-0.00069303	0	0.0037465	0	-0.017391	-0.00069303	-0.0074013	0.81819	-0.0048461	-0.92749	-0.0011243	0.045424	-0.0036011	0.0016642	0.0071236	0.18852	-0.0045695	0.00013863	-0.013936	0.0038854	-0.0074035	-0.014786	-0.027808	0	1.1863	0.0025446	0.55954	0.012516	
Deletion Peak  4 - CN values	3p25.2 	chr3:12809221-12884390(probes 265733:265776)        	chr3:12826933-12917206(probes 265744:265787)        	chr3:12863387-12871816(probes 265766:265767)        	0.086468	   0.086468		Actual Copy Change Given	-0.90684	-0.78446	-0.0091286	-0.029763	-1.0125	-0.4448	0.0026978	-0.0056757	0	-0.98589	-0.92036	-0.87582	-0.020806	-0.78602	-0.0055574	-0.011611	-1.2929	-0.018465	-0.66228	-1.094	-1.0169	-0.0098422	-0.99997	-0.74377	-0.13678	-0.92646	-0.0011087	-0.016154	-0.98813	-0.91348	0	-0.64314	0.1114	-1.0985	-0.0025806	-0.97959	0	-0.97525	0	-0.20252	0.0041632	-0.80385	-0.0050024	-1.1154	-0.013049	0.036653	-0.91746	-0.071391	-0.95753	-0.68937	-0.4767	-0.92406	-0.0027707	0.0091705	-0.83454	-0.57417	-1.0046	0.0049969	0.0022193	0.0034687	-1.0361	0.0023581	-0.00033463	0.0065262	-0.70625	-0.0028802	0.008933	-0.66559	-0.90928	-0.0037395	-0.00055444	-0.76587	-0.47965	-1.0681	0.023946	-0.46067	0	-0.00092251	-0.66417	-1.0149	
Deletion Peak  5 - CN values	3p25.1 	chr3:13545239-13692618(probes 266194:266272)        	chr3:13569003-13687698(probes 266207:266269)        	chr3:13643641-13643977(probes 266239:266240)        	0.013477	   0.013477		Actual Copy Change Given	-0.90684	-0.78446	-0.0091286	-0.029763	-1.0125	-0.4448	0.0026978	-0.0056757	0	-0.98589	-0.92036	-0.87582	-0.020806	-0.78602	-0.0055574	-0.011611	-0.88522	-0.018465	-0.66228	-1.094	-1.0169	-0.0098422	-1.0273	-0.74377	-0.13678	-0.92646	-0.0011087	-0.016154	-0.98813	-0.91348	0	-0.64314	0.1114	-1.0985	-0.0025806	-0.97959	0	-0.97525	0	-0.20252	0.0041632	-0.80385	-0.0050024	-1.1154	-0.013049	0.036653	-0.91746	-0.071391	-1.0123	-0.68937	-0.4767	-0.92406	-0.0027707	0.0091705	-0.83454	-0.57417	-1.0046	0.0049969	0.0022193	0.0034687	-1.0361	0.0023581	-0.00033463	0.0065262	-0.70625	-0.0028802	0.008933	-0.66559	-0.90928	-0.0037395	-0.00055444	-0.76587	-0.47965	-1.0681	0.023946	-0.46067	0	-0.00092251	-0.66417	-1.0149	
Deletion Peak  6 - CN values	3p22.2 	chr3:38314751-38389497(probes 280792:280833)        	chr3:38317489-38365440(probes 280793:280820)        	chr3:38346780-38356025(probes 280804:280816)        	0.0051421	  0.0050023		Actual Copy Change Given	-0.88827	-0.78446	-0.0091286	-0.029763	-1.0125	-0.42724	0.0026978	-0.0056757	0	-0.94584	-0.89212	-0.87582	0.0079175	-0.78391	-0.0055574	-0.011611	-0.80527	-0.018465	-0.65108	-1.0957	-0.99242	-0.0098422	-0.97371	-0.74377	-0.13678	-0.93594	-0.0011087	-0.041159	-0.9305	-1.2929	0	-0.64314	0.1114	-1.0619	-0.0025806	-0.97466	0	-1.2929	0	-0.20252	-0.013402	-0.80385	-0.0050024	-1.0724	0.0054139	0.056228	-0.91746	-0.071391	-0.92533	-0.68937	-0.4767	-0.92406	0.0056919	0.0091705	-0.83454	-0.57812	-0.99039	0.0049969	0.0022193	0.0034687	-0.99639	-0.00034761	-0.00033463	0.0065262	-0.70625	-0.0028802	0	-0.66559	-0.90928	-0.0037395	-0.00055444	-0.76587	-0.47965	-1.03	0.027919	-0.45961	0	-0.00092251	-0.66417	-1.0022	
Deletion Peak  7 - CN values	3p14.2 	chr3:58651854-67050202(probes 291997:297173)        	chr3:59702822-61238217(probes 292651:292849)        	chr3:61116010-61118796(probes 292751:292752)        	0.09134	   0.090113		Actual Copy Change Given	-0.88827	-0.78446	-0.011266	-0.029763	-1.0108	-0.42724	0.0026978	-0.0056757	0	-0.9413	-0.89212	-0.88688	0.0079175	-0.78391	-0.0055574	-0.011611	-0.80527	-0.018465	-0.65108	-1.0088	-0.99242	0.01307	-0.97371	-0.74377	-0.13678	-0.90631	-0.0011087	-0.041159	-0.9305	-0.86664	0	-0.64314	-0.0056649	-1.0823	-0.0025806	-0.97466	0	-0.95304	0	-0.22537	0.06208	-0.80385	-0.0050024	-1.0724	0.00064041	-0.99388	-0.91746	-0.071391	-0.91657	-0.68937	-0.4767	-0.92406	0.0023581	-0.0086404	-0.83454	-0.5718	-0.99039	0.0049969	0.0022193	0.0034687	-0.99639	-0.00034761	-0.00033463	0.0065262	-0.70001	-0.0028802	0	-0.66559	-0.90928	-0.0037395	-0.00055444	-0.76587	-0.47438	-1.0375	0.025949	-0.45961	0	0.0031336	-0.66417	-0.99172	
Deletion Peak  8 - CN values	3q24   	chr3:142896601-143694372(probes 337635:338024)    	chr3:142927239-143570038(probes 337672:337953)    	chr3:143374387-143377572(probes 337813:337814)    	0.0049422	  0.0049422		Actual Copy Change Given	-0.88827	-0.78446	-0.011266	-0.057654	-0.99405	-0.41597	0.004719	-0.0056757	0	-0.93926	-0.89212	-0.86688	0.0079175	-0.79073	-0.0055574	-0.011611	-0.80527	-0.018465	-0.65108	-1.0225	-0.99242	0.01307	-0.9884	-0.74377	-0.13678	-0.90631	-0.0055375	-0.041159	-0.92537	-0.85955	0	-0.64314	0.0019418	-1.0665	0.0044411	-0.97466	0	-0.95449	0	-0.22537	0.06208	-0.80385	-0.0076936	-1.0714	0.00064041	-0.9828	-0.90502	-0.080518	-0.91657	-0.68971	-0.47268	-0.92406	0.0018594	-0.01253	-0.83454	-0.57091	-0.99039	0.0015285	0.0022193	-0.0044155	-1.0077	-0.00034761	0.0054139	0.0065262	-0.70118	0	0	-0.92017	-0.90601	-0.0037395	-0.00055444	-0.76587	-0.47438	-1.0375	0.041034	-0.45961	0	0	-0.66417	-0.99172	
Deletion Peak  9 - CN values	3q29   	chr3:194238890-194369918(probes 364517:364564)    	chr3:194294752-194369918(probes 364537:364564)    	chr3:194331876-194335047(probes 364551:364552)    	0.023516	   0.023516		Actual Copy Change Given	-0.89271	-0.78446	-0.011266	-0.044957	-0.99405	-0.41597	0.004719	-0.0055375	0	-0.93747	-0.89212	-0.86688	0.0079175	-0.79073	-0.0055574	-0.011611	-0.80527	-0.019289	-0.65108	-1.0056	-1.0085	0.01307	-0.97839	-0.74377	-0.13678	-0.93578	-0.0055375	-0.041159	-0.97724	-0.88711	0	-0.64314	0.0019418	-1.0536	0.0044411	-0.97409	0	-0.95449	0	-0.22537	0.06208	-0.80385	-0.0076936	-1.0612	-0.0047079	-0.9809	-0.92971	-0.080518	-0.91657	-0.68971	-0.47268	-0.92406	0.0018594	-0.01253	-0.83454	-0.57091	-1.0026	0.0080567	0.0022193	-0.0044155	-0.99588	-0.00034761	-0.0040162	0.0065262	-0.70118	0	-0.0089619	-0.86908	-0.90601	-0.0037395	-0.00055444	-0.76587	-0.47438	-1.0375	0.041034	-0.45961	0	0	-0.66417	-1.0033	
Deletion Peak 10 - CN values	6q25.2 	chr6:142365089-158863471(probes 646622:657284)    	chr6:152440226-152962152(probes 653215:653601)    	chr6:142549788-158839026(probes 646698:657270)    	0.0054289	   0.023516		Actual Copy Change Given	0.010285	-0.67417	0.99551	0.96165	-0.89878	-0.86161	-1.0341	-0.0033243	0.0043021	-0.013677	-0.016154	0.010564	0.015587	-0.84607	-0.034787	-0.020275	-0.81163	0.94164	0.61679	0.012615	0.027497	-1.0907	-0.92723	0.015168	-0.55527	-0.67866	0.04741	-0.75599	-0.81688	0.063509	0.84593	-0.66633	-0.96739	-1.0689	0.0023581	0.01217	0.0036511	0.013074	-0.98679	-0.0070916	-1.0385	0.022444	0.9662	0.0049969	-0.045635	0.0011093	-0.94749	1.5765	0.013772	-0.0051707	0.004719	-0.10985	0.0063871	-0.0036011	-0.83397	0.04259	0.042166	0.00069327	0.001803	-0.0088526	0.017264	0.0019418	-0.00069303	0.0016642	0.0087528	-0.0023553	-0.98158	0.027778	0.0041632	-0.0040602	-0.00013862	0.013353	-0.96428	0.0077783	-0.92852	0.00597	0.00027728	-0.00037208	-0.0092119	0.027076	
Deletion Peak 11 - CN values	6q27   	chr6:166922042-167347293(probes 662292:662620)    	chr6:166821252-167347293(probes 662216:662620)    	chr6:167001025-167071947(probes 662373:662432)    	0.0049422	   0.046377		Actual Copy Change Given	0.010285	-0.67417	0.99551	0.96165	-0.97124	-0.86161	-1.0647	-0.0033243	0.0013102	-0.013677	-0.16307	0.010564	0.015587	-0.84607	-0.034787	-0.020275	-0.81163	0.94164	0.61679	0.012615	0.027497	-1.0907	-0.92723	0.015168	-0.55527	-0.70482	0.04741	-0.75599	-0.81688	0.033831	0.84593	-0.66633	-0.0020784	-1.1318	0.0023581	0.01217	0.0036511	0.013074	-1.0196	-0.0070916	-1.0385	0.022444	0.9662	0.0049969	-0.045635	0.0011093	-0.94749	-1.0184	0.013772	-0.0051707	0.004719	-0.10985	0.0024969	-0.0036011	-0.86129	0.04259	0.042166	0.00069327	0.001803	-0.0088526	0.017264	0.0019418	-0.00069303	0.0016642	0.0087528	-0.0023553	-0.98158	0.027778	0.0041632	-0.0040602	-0.00013862	0.013353	-0.96428	0.0077783	-0.92852	0.00597	0.00027728	-0.00037208	-0.0092119	0.027076	
Deletion Peak 12 - CN values	8p11.22	chr8:38312793-38587017(probes 766547:766674)        	chr8:38361601-38388011(probes 766560:766576)        	chr8:38376403-38379249(probes 766569:766570)        	0.046377	   0.046377		Actual Copy Change Given	0.13865	-0.81474	-0.005814	0.95437	-1.0468	0.72754	-0.0055375	0.0081959	-0.0023553	0.12714	0.089706	-0.024084	-0.0088526	-0.95352	-0.00057443	0.80442	-0.83713	1.9289	-0.075211	0.22171	0.0026357	0.011815	-0.98945	-0.06786	0.18737	-0.95623	-0.0008316	0.0076392	0.77067	-0.93053	0.82706	-0.57654	0.48165	-0.98983	-0.0031859	0.58274	0.0012481	-0.90388	-0.010564	-0.00044998	-0.0062286	0.55324	-0.0026503	-0.89212	-0.012851	-0.010232	-0.9671	-1.0361	-0.013677	1.3303	-0.49214	-0.033132	0.0055529	-0.0019399	-0.86625	0.58256	-0.013815	-0.0069195	0.0013868	0.89615	0.93671	0	-0.00037656	0.020763	-0.26793	0.0023581	-0.0085359	-0.013815	-0.01702	-0.00069303	0.075271	-0.42909	-0.9643	0.99219	0.70355	-0.4767	0.62533	0.00018632	0.63434	0.0068044	
Deletion Peak 13 - CN values	11p15.1	chr11:16623557-16799846(probes 983701:983767)      	chr11:16623907-16778786(probes 983702:983751)      	chr11:16709137-16721543(probes 983727:983728)      	4.661e-23	  4.661e-23		Actual Copy Change Given	-0.011198	-0.015879	0.0019418	0.99779	-0.025483	0.31168	-0.0084385	-0.0123	-0.0044312	-0.0094046	-0.44081	-0.01037	-0.029994	-0.01801	-0.0052809	-0.0083005	-0.012319	-0.0091034	0.55726	-0.010548	-0.011335	-0.018906	-0.0071337	-0.011749	0.027076	-0.0059522	0.0052749	0.014888	-0.015649	-0.01849	0.8161	-0.020549	-0.01106	-0.018765	-0.0015243	0.57326	-0.0033243	-0.012713	-0.0073339	0.0094148	-0.022058	-0.01106	0.0017849	-0.016017	0.88774	-0.0099565	-0.014228	-0.0080783	-0.010784	0.38794	-0.0044312	-0.013815	-0.0026322	0.0036808	-0.014366	-0.005261	-0.0067813	-0.0094907	0.0016642	0	-0.022975	0.0022193	0.0022193	0.0020805	-0.011749	0.00083195	-0.0074474	-0.0085766	-0.92711	-0.00041585	-0.0059522	0.11477	-0.011335	-0.0089906	-0.018902	-0.0066432	0.60268	-0.00064536	0.62449	-0.005261	
Deletion Peak 14 - CN values	11q24.3	chr11:114997555-133313263(probes 1037502:1050260)	chr11:128768939-128815336(probes 1047404:1047452)	chr11:115065439-132449843(probes 1037554:1049941)	0.023516	   0.023516		Actual Copy Change Given	-0.011946	-0.015879	0.0019418	1.0308	-0.025483	0.30873	-0.030348	-1.0255	-0.0044312	-0.0031859	0	-0.01037	-0.022332	-0.01801	-0.0052809	-0.0070576	-0.012319	-0.013928	0.55726	-0.010548	-0.011335	-0.012992	-0.0071337	-0.011749	0.027076	-0.0059522	0.0052749	0.020203	-0.0072863	-0.0013657	0.8161	-0.020549	-0.33052	-0.0017156	0.004719	0.57326	-0.0033243	-0.012713	-0.0073339	0.0094148	-0.20883	-0.01106	0.0017849	0	-1.0322	-0.0099565	-0.017391	-0.0080783	-0.010508	0.38794	-0.0037395	-0.013815	1.0173	0.0036808	-0.0073339	-0.005261	-0.0067813	-0.015471	0.0016642	0	-0.012989	0.0022193	0.0022193	0.0020805	-0.0088526	-0.97338	0.010883	-0.0085766	-0.0038779	-0.25261	-0.0087146	-0.0060904	-0.011335	-0.0089906	-0.018902	-0.0066432	0.60202	-0.00064536	-0.69033	-0.005261	
Deletion Peak 15 - CN values	16q12.1	chr16:47735031-48202502(probes 1288092:1288315)    	chr16:48114144-48194022(probes 1288266:1288310)    	chr16:48167575-48173058(probes 1288289:1288290)    	0.016325	   0.024232		Actual Copy Change Given	-0.31494	-0.70747	0.020063	-0.93186	-0.94652	-0.096704	-0.024388	-0.022881	-0.0080244	-0.024524	-0.0022023	-0.014503	-0.060748	-0.53708	-0.0088725	0.032281	-0.82359	0.019808	0.55691	-0.12944	-0.020961	-0.053615	-0.86873	-0.036674	-0.094988	-0.023703	0.0034687	-0.97082	-0.046265	-0.046518	-0.0066432	-0.040345	-0.020001	-0.0091286	-0.0013858	-0.00055444	-0.0044312	-0.0062286	0.00013863	-0.013987	-0.035448	-0.011209	0.0081778	-0.01904	-0.0032192	0.030591	-0.049695	0.017061	-0.035312	-0.0068293	-0.48323	-0.087686	-0.0023553	-0.054825	-0.8586	0.0077783	-0.020138	-0.00055444	-0.00041585	0.0013868	0.0033197	-0.0071958	0.0024969	-0.0095738	-0.0030475	0.00013863	-0.95004	-0.0048461	0.012934	-0.86097	-0.0071958	-0.016154	-0.89549	-1.0531	-0.94627	-0.0063895	-0.006505	0.0010183	-0.026523	-0.034631	
Deletion Peak 16 - CN values	16q23.3	chr16:82873004-83542835(probes 1310831:1311400)    	chr16:82658729-83830499(probes 1310667:1311778)    	chr16:83402886-83405550(probes 1311223:1311224)    	0.058855	   0.086468		Actual Copy Change Given	-0.30921	-0.70747	0.020063	-1.0541	-0.96365	-0.096704	-0.024388	-0.022881	-0.0080244	-0.024524	-0.0022023	-0.014503	-0.060748	-0.53708	-0.0088725	0.032281	-0.82359	0.019808	0.55744	-0.12944	-0.020961	-0.053615	-0.92388	-0.036674	-0.094988	-0.023703	0.0034687	-0.97082	-0.04342	-0.063301	-0.0066432	-0.040345	-0.020001	-0.0087146	-0.0013858	-0.00055444	-0.0044312	-0.0062286	0.00013863	-0.013987	-0.035448	-0.011209	0.0040468	-0.01904	-0.0032192	0.030591	-0.049695	0.020848	-0.049154	-0.0068293	-0.48323	-0.10355	-0.017803	-0.054825	-0.9145	0.0077783	-0.020138	-0.013114	-0.00041585	0.0013868	0.0033197	-0.0071958	0.0024969	-0.0091286	-0.0030475	0.00013863	-0.96572	-0.0048461	0.012934	-0.82709	-0.0071958	-0.016154	-0.99381	-1.0707	-0.94627	-0.0063895	-0.006505	-0.0078388	-0.026523	-0.034631	
Deletion Peak 17 - CN values	16q24.3	chr16:88525832-90354753(probes 1314294:1314325)    	chr16:89304312-90354753(probes 1314295:1314325)    	chr16:89367002-90354753(probes 1314310:1314325)    	0.12091	     0.1095		Actual Copy Change Given	-0.31928	-0.70747	0.020063	-1.1253	-1.0093	-0.096704	-0.024388	-0.022881	-0.0080244	-0.024524	-0.0026322	-0.014503	-0.060748	-0.53708	-0.0088725	0.032281	-0.84876	0.04545	0.56401	-0.12944	-0.020961	-0.053615	-0.97648	-0.036674	-0.094988	-0.063181	0.0034687	-0.97082	-1.0408	-0.063301	-0.042972	-0.040345	-0.020001	-0.0087146	-0.0013858	-0.00055444	-0.0044312	-0.015152	0.00013863	-0.013987	-0.035448	-0.0015243	0.0040468	-0.01904	-0.014503	0.034818	-0.049695	-0.0026863	-0.049154	-0.0068293	-0.51001	-0.10355	-0.017803	-0.054825	-0.9145	-0.02367	-0.020138	-0.013114	-0.00041585	0.0013868	0.0033197	-0.0071958	0.0024969	-0.014641	-0.0030475	0.00013863	-0.96572	-0.0048461	0.012934	0.1637	-0.0071958	-0.016154	-1.0008	-1.2929	-0.94627	-0.020001	-0.006505	-0.0078388	-0.026523	-0.034631	
Deletion Peak 18 - CN values	17q12  	chr17:27397975-51318309(probes 1324823:1335294)    	chr17:37020981-37081706(probes 1329052:1329081)    	chr17:37042488-37072191(probes 1329056:1329076)    	0.22482	    0.22482		Actual Copy Change Given	0.0351	-0.0098383	0.012655	0.066778	-0.048748	0.63938	-0.029311	0.015028	0.00027728	-0.034086	0.020623	-0.011198	-0.045635	0.0013167	-0.014661	0.050392	-0.0085952	0.05265	0.53186	-0.057331	-0.020961	-0.066791	0.029107	0.0081959	-0.013953	-0.0083005	0.0030522	0.084932	-0.031176	-0.063373	-0.014778	-0.016017	-0.014228	0.0066653	-0.0091286	0.023005	-0.0069195	-0.0027707	0.001803	0.054786	-0.042517	0.016425	0.03734	-0.033132	0.0027745	0.043299	-0.058327	0.02281	-0.024251	0.64463	-0.0084385	-0.0073339	-0.0055375	-1.2929	-0.027124	0.50481	-0.015604	-0.77948	0	0.87587	0.016286	-0.013264	-0.0027707	-0.0026322	0.00041593	-0.0071958	0.040934	0.011261	0.023847	-0.89779	-0.010853	-0.0038779	-0.006505	0.030732	-0.034904	-0.0067813	0.63335	-0.009909	0.58782	-0.038306