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morpheus.js
Commit 5845108e authored by Joshua Gould's avatar Joshua Gould
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empty check

parent 7ad195e9
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src/matrix/sort_key.js
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morpheus.MatchesOnTopSortKey = function(project, modelIndices, name) { morpheus.MatchesOnTopSortKey = function (project, modelIndices, name) {
var modelHighlight = {}; var modelHighlight = {};
var p = project; var p = project;
var viewIndices = []; var viewIndices = [];
...@@ -6,7 +6,7 @@ morpheus.MatchesOnTopSortKey = function(project, modelIndices, name) { ...@@ -6,7 +6,7 @@ morpheus.MatchesOnTopSortKey = function(project, modelIndices, name) {
modelHighlight[modelIndices[i]] = true; modelHighlight[modelIndices[i]] = true;
viewIndices.push(i); viewIndices.push(i);
} }
this.comparator = function(i1, i2) { this.comparator = function (i1, i2) {
var a = modelHighlight[i1] === undefined ? 0 : 1; var a = modelHighlight[i1] === undefined ? 0 : 1;
var b = modelHighlight[i2] == undefined ? 0 : 1; var b = modelHighlight[i2] == undefined ? 0 : 1;
return (a > b ? -1 : (a === b ? 0 : 1)); return (a > b ? -1 : (a === b ? 0 : 1));
...@@ -15,22 +15,22 @@ morpheus.MatchesOnTopSortKey = function(project, modelIndices, name) { ...@@ -15,22 +15,22 @@ morpheus.MatchesOnTopSortKey = function(project, modelIndices, name) {
this.name = name; this.name = name;
}; };
morpheus.MatchesOnTopSortKey.prototype = { morpheus.MatchesOnTopSortKey.prototype = {
init : function() { init: function () {
}, },
getSortOrder : function() { getSortOrder: function () {
return 2; return 2;
}, },
getComparator : function() { getComparator: function () {
return this.comparator; return this.comparator;
}, },
getValue : function(i) { getValue: function (i) {
return i; return i;
}, },
toString : function(i) { toString: function (i) {
return this.name; return this.name;
} }
}; };
morpheus.SortKey = function(field, sortOrder) { morpheus.SortKey = function (field, sortOrder) {
if (typeof sortOrder === 'string') { if (typeof sortOrder === 'string') {
sortOrder = morpheus.SortKey.SortOrder[sortOrder.toUpperCase()]; sortOrder = morpheus.SortKey.SortOrder[sortOrder.toUpperCase()];
} }
...@@ -42,16 +42,16 @@ morpheus.SortKey = function(field, sortOrder) { ...@@ -42,16 +42,16 @@ morpheus.SortKey = function(field, sortOrder) {
}; };
morpheus.SortKey.SortOrder = { morpheus.SortKey.SortOrder = {
ASCENDING : 0, ASCENDING: 0,
DESCENDING : 1, DESCENDING: 1,
UNSORTED : 2, UNSORTED: 2,
CUSTOM : 3, CUSTOM: 3,
TOP_N : 4 TOP_N: 4
}; };
morpheus.SortKey.ASCENDING_COMPARATOR = function(a, b) { morpheus.SortKey.ASCENDING_COMPARATOR = function (a, b) {
// we want NaNs to end up at the bottom // we want NaNs to end up at the bottom
var aNaN = (a == null || _.isNumber(a) && isNaN(a)); var aNaN = (a == null || _.isNumber(a) && isNaN(a) || a.length === 0);
var bNaN = (b == null || _.isNumber(b) && isNaN(b)); var bNaN = (b == null || _.isNumber(b) && isNaN(b) || b.length === 0);
if (aNaN && bNaN) { if (aNaN && bNaN) {
return 0; return 0;
} }
...@@ -71,10 +71,10 @@ morpheus.SortKey.ASCENDING_COMPARATOR = function(a, b) { ...@@ -71,10 +71,10 @@ morpheus.SortKey.ASCENDING_COMPARATOR = function(a, b) {
return (a === b ? 0 : (a < b ? -1 : 1)); return (a === b ? 0 : (a < b ? -1 : 1));
}; };
morpheus.SortKey.DESCENDING_COMPARATOR = function(a, b) { morpheus.SortKey.DESCENDING_COMPARATOR = function (a, b) {
var aNaN = (a == null || _.isNumber(a) && isNaN(a)); var aNaN = (a == null || _.isNumber(a) && isNaN(a) || a.length === 0);
var bNaN = (b == null || _.isNumber(b) && isNaN(b)); var bNaN = (b == null || _.isNumber(b) && isNaN(b)) || b.length === 0;
if (aNaN && bNaN) { if (aNaN && bNaN) {
return 0; return 0;
} }
...@@ -87,7 +87,7 @@ morpheus.SortKey.DESCENDING_COMPARATOR = function(a, b) { ...@@ -87,7 +87,7 @@ morpheus.SortKey.DESCENDING_COMPARATOR = function(a, b) {
return (a === b ? 0 : (a < b ? 1 : -1)); return (a === b ? 0 : (a < b ? 1 : -1));
}; };
morpheus.SortKey.NUMBER_ASCENDING_COMPARATOR = function(a, b) { morpheus.SortKey.NUMBER_ASCENDING_COMPARATOR = function (a, b) {
// we want NaNs to end up at the bottom // we want NaNs to end up at the bottom
var aNaN = (a == null || isNaN(a)); var aNaN = (a == null || isNaN(a));
var bNaN = (b == null || isNaN(b)); var bNaN = (b == null || isNaN(b));
...@@ -103,7 +103,7 @@ morpheus.SortKey.NUMBER_ASCENDING_COMPARATOR = function(a, b) { ...@@ -103,7 +103,7 @@ morpheus.SortKey.NUMBER_ASCENDING_COMPARATOR = function(a, b) {
return (a === b ? 0 : (a < b ? -1 : 1)); return (a === b ? 0 : (a < b ? -1 : 1));
}; };
morpheus.SortKey.NUMBER_DESCENDING_COMPARATOR = function(a, b) { morpheus.SortKey.NUMBER_DESCENDING_COMPARATOR = function (a, b) {
var aNaN = (a == null || isNaN(a)); var aNaN = (a == null || isNaN(a));
var bNaN = (b == null || isNaN(b)); var bNaN = (b == null || isNaN(b));
if (aNaN && bNaN) { if (aNaN && bNaN) {
...@@ -118,18 +118,18 @@ morpheus.SortKey.NUMBER_DESCENDING_COMPARATOR = function(a, b) { ...@@ -118,18 +118,18 @@ morpheus.SortKey.NUMBER_DESCENDING_COMPARATOR = function(a, b) {
return (a === b ? 0 : (a < b ? 1 : -1)); return (a === b ? 0 : (a < b ? 1 : -1));
}; };
morpheus.SortKey.STRING_ASCENDING_COMPARATOR = function(a, b) { morpheus.SortKey.STRING_ASCENDING_COMPARATOR = function (a, b) {
a = (a == null || a.toLowerCase === undefined) ? null : a.toLowerCase(); a = (a == null || a.toLowerCase === undefined) ? null : a.toLowerCase();
b = (b == null || b.toLowerCase === undefined) ? null : b.toLowerCase(); b = (b == null || b.toLowerCase === undefined) ? null : b.toLowerCase();
return (a === b ? 0 : (a < b ? -1 : 1)); return (a === b ? 0 : (a < b ? -1 : 1));
}; };
morpheus.SortKey.STRING_DESCENDING_COMPARATOR = function(a, b) { morpheus.SortKey.STRING_DESCENDING_COMPARATOR = function (a, b) {
a = (a == null || a.toLowerCase === undefined) ? null : a.toLowerCase(); a = (a == null || a.toLowerCase === undefined) ? null : a.toLowerCase();
b = (b == null || b.toLowerCase === undefined) ? null : b.toLowerCase(); b = (b == null || b.toLowerCase === undefined) ? null : b.toLowerCase();
return (a === b ? 0 : (a < b ? 1 : -1)); return (a === b ? 0 : (a < b ? 1 : -1));
}; };
morpheus.SortKey.ELEMENT_ASCENDING_COMPARATOR = function(obj1, obj2) { morpheus.SortKey.ELEMENT_ASCENDING_COMPARATOR = function (obj1, obj2) {
var a = +obj1; var a = +obj1;
var b = +obj2; var b = +obj2;
var aNaN = isNaN(a); var aNaN = isNaN(a);
...@@ -148,7 +148,7 @@ morpheus.SortKey.ELEMENT_ASCENDING_COMPARATOR = function(obj1, obj2) { ...@@ -148,7 +148,7 @@ morpheus.SortKey.ELEMENT_ASCENDING_COMPARATOR = function(obj1, obj2) {
if (obj1.toObject && obj2.toObject) { if (obj1.toObject && obj2.toObject) {
var a1 = obj1.toObject(); var a1 = obj1.toObject();
var b1 = obj2.toObject(); var b1 = obj2.toObject();
for ( var name in a1) { for (var name in a1) {
a = a1[name]; a = a1[name];
b = b1[name]; b = b1[name];
...@@ -162,7 +162,7 @@ morpheus.SortKey.ELEMENT_ASCENDING_COMPARATOR = function(obj1, obj2) { ...@@ -162,7 +162,7 @@ morpheus.SortKey.ELEMENT_ASCENDING_COMPARATOR = function(obj1, obj2) {
return (a === b ? 0 : (a < b ? -1 : 1)); return (a === b ? 0 : (a < b ? -1 : 1));
}; };
morpheus.SortKey.ELEMENT_DESCENDING_COMPARATOR = function(obj1, obj2) { morpheus.SortKey.ELEMENT_DESCENDING_COMPARATOR = function (obj1, obj2) {
// we want NaNs to end up at the bottom // we want NaNs to end up at the bottom
var a = +obj1; var a = +obj1;
var b = +obj2; var b = +obj2;
...@@ -181,7 +181,7 @@ morpheus.SortKey.ELEMENT_DESCENDING_COMPARATOR = function(obj1, obj2) { ...@@ -181,7 +181,7 @@ morpheus.SortKey.ELEMENT_DESCENDING_COMPARATOR = function(obj1, obj2) {
if (obj1.toObject && obj2.toObject) { if (obj1.toObject && obj2.toObject) {
var a1 = obj1.toObject(); var a1 = obj1.toObject();
var b1 = obj2.toObject(); var b1 = obj2.toObject();
for ( var name in a1) { for (var name in a1) {
a = a1[name]; a = a1[name];
b = b1[name]; b = b1[name];
var c = (a === b ? 0 : (a < b ? 1 : -1)); var c = (a === b ? 0 : (a < b ? 1 : -1));
...@@ -193,7 +193,7 @@ morpheus.SortKey.ELEMENT_DESCENDING_COMPARATOR = function(obj1, obj2) { ...@@ -193,7 +193,7 @@ morpheus.SortKey.ELEMENT_DESCENDING_COMPARATOR = function(obj1, obj2) {
} }
return (a === b ? 0 : (a < b ? 1 : -1)); return (a === b ? 0 : (a < b ? 1 : -1));
}; };
morpheus.SortKey.BOX_PLOT_SUMMARY_FUNCTION = function(array) { morpheus.SortKey.BOX_PLOT_SUMMARY_FUNCTION = function (array) {
var box = array.box; var box = array.box;
if (box == null) { if (box == null) {
var v = morpheus.VectorUtil.arrayAsVector(array); var v = morpheus.VectorUtil.arrayAsVector(array);
...@@ -206,7 +206,7 @@ morpheus.SortKey.BOX_PLOT_SUMMARY_FUNCTION = function(array) { ...@@ -206,7 +206,7 @@ morpheus.SortKey.BOX_PLOT_SUMMARY_FUNCTION = function(array) {
return box.q3; return box.q3;
}; };
morpheus.SortKey.ARRAY_MAX_SUMMARY_FUNCTION = function(array) { morpheus.SortKey.ARRAY_MAX_SUMMARY_FUNCTION = function (array) {
var a = 0; var a = 0;
if (array != null) { if (array != null) {
var aPosMax = -Number.MAX_VALUE; var aPosMax = -Number.MAX_VALUE;
...@@ -231,8 +231,8 @@ morpheus.SortKey.ARRAY_MAX_SUMMARY_FUNCTION = function(array) { ...@@ -231,8 +231,8 @@ morpheus.SortKey.ARRAY_MAX_SUMMARY_FUNCTION = function(array) {
} }
return a; return a;
}; };
morpheus.SortKey.ARRAY_ASCENDING_COMPARATOR = function(summary) { morpheus.SortKey.ARRAY_ASCENDING_COMPARATOR = function (summary) {
return function(a, b) { return function (a, b) {
var aNaN = a == null; var aNaN = a == null;
var bNaN = b == null; var bNaN = b == null;
if (aNaN && bNaN) { if (aNaN && bNaN) {
...@@ -261,8 +261,8 @@ morpheus.SortKey.ARRAY_ASCENDING_COMPARATOR = function(summary) { ...@@ -261,8 +261,8 @@ morpheus.SortKey.ARRAY_ASCENDING_COMPARATOR = function(summary) {
}; };
}; };
morpheus.SortKey.ARRAY_DESCENDING_COMPARATOR = function(summary) { morpheus.SortKey.ARRAY_DESCENDING_COMPARATOR = function (summary) {
return function(a, b) { return function (a, b) {
var aNaN = a == null; var aNaN = a == null;
var bNaN = b == null; var bNaN = b == null;
if (aNaN && bNaN) { if (aNaN && bNaN) {
...@@ -291,18 +291,18 @@ morpheus.SortKey.ARRAY_DESCENDING_COMPARATOR = function(summary) { ...@@ -291,18 +291,18 @@ morpheus.SortKey.ARRAY_DESCENDING_COMPARATOR = function(summary) {
}; };
}; };
morpheus.SortKey.reverseComparator = function(c) { morpheus.SortKey.reverseComparator = function (c) {
return function(a, b) { return function (a, b) {
return c(b, a); return c(b, a);
}; };
}; };
morpheus.SortKey.prototype = { morpheus.SortKey.prototype = {
init : function(dataset) { init: function (dataset) {
this.v = dataset.getRowMetadata().getByName(this.field); this.v = dataset.getRowMetadata().getByName(this.field);
if (!this.v) { if (!this.v) {
this.v = {}; this.v = {};
this.v.getValue = function() { this.v.getValue = function () {
return 0; return 0;
}; };
this.c = this.sortOrder === morpheus.SortKey.SortOrder.ASCENDING ? morpheus.SortKey.ASCENDING_COMPARATOR this.c = this.sortOrder === morpheus.SortKey.SortOrder.ASCENDING ? morpheus.SortKey.ASCENDING_COMPARATOR
...@@ -326,19 +326,19 @@ morpheus.SortKey.prototype = { ...@@ -326,19 +326,19 @@ morpheus.SortKey.prototype = {
} }
} }
}, },
getComparator : function() { getComparator: function () {
return this.c; return this.c;
}, },
getValue : function(i) { getValue: function (i) {
return this.v.getValue(i); return this.v.getValue(i);
}, },
setSortOrder : function(sortOrder) { setSortOrder: function (sortOrder) {
this.sortOrder = sortOrder; this.sortOrder = sortOrder;
}, },
getSortOrder : function() { getSortOrder: function () {
return this.sortOrder; return this.sortOrder;
}, },
toString : function() { toString: function () {
return this.field; return this.field;
} }
}; };
...@@ -348,7 +348,7 @@ morpheus.SortKey.prototype = { ...@@ -348,7 +348,7 @@ morpheus.SortKey.prototype = {
* @param isColumnSort - * @param isColumnSort -
* sort columns by selected rows. * sort columns by selected rows.
*/ */
morpheus.SortByValuesKey = function(modelIndices, sortOrder, isColumnSort) { morpheus.SortByValuesKey = function (modelIndices, sortOrder, isColumnSort) {
this.field = 'selection'; this.field = 'selection';
this.bothCount = 10; this.bothCount = 10;
this.modelIndices = modelIndices; this.modelIndices = modelIndices;
...@@ -358,14 +358,14 @@ morpheus.SortByValuesKey = function(modelIndices, sortOrder, isColumnSort) { ...@@ -358,14 +358,14 @@ morpheus.SortByValuesKey = function(modelIndices, sortOrder, isColumnSort) {
}; };
morpheus.SortByValuesKey.prototype = { morpheus.SortByValuesKey.prototype = {
init : function(dataset, visibleModelIndices) { init: function (dataset, visibleModelIndices) {
// isColumnSort-sort columns by selected rows // isColumnSort-sort columns by selected rows
// dataset is transposed if !isColumnSort // dataset is transposed if !isColumnSort
this.dataset = morpheus.DatasetUtil.slicedView(dataset, null, this.dataset = morpheus.DatasetUtil.slicedView(dataset, null,
this.modelIndices); this.modelIndices);
this.rowView = new morpheus.DatasetRowView(this.dataset); this.rowView = new morpheus.DatasetRowView(this.dataset);
this.summaryFunction = this.modelIndices.length > 1 ? morpheus.Median this.summaryFunction = this.modelIndices.length > 1 ? morpheus.Median
: function(row) { : function (row) {
return row.getValue(0); return row.getValue(0);
}; };
if (this.sortOrder === morpheus.SortKey.SortOrder.TOP_N) { if (this.sortOrder === morpheus.SortKey.SortOrder.TOP_N) {
...@@ -377,8 +377,8 @@ morpheus.SortByValuesKey.prototype = { ...@@ -377,8 +377,8 @@ morpheus.SortByValuesKey.prototype = {
var value = this.summaryFunction(this.rowView.setIndex(index)); var value = this.summaryFunction(this.rowView.setIndex(index));
if (!isNaN(value)) { if (!isNaN(value)) {
pairs.push({ pairs.push({
index : index, index: index,
value : value value: value
}); });
} else { } else {
missingIndices.push(index); missingIndices.push(index);
...@@ -386,7 +386,7 @@ morpheus.SortByValuesKey.prototype = { ...@@ -386,7 +386,7 @@ morpheus.SortByValuesKey.prototype = {
} }
// sort values in descending order // sort values in descending order
pairs pairs
.sort(function(a, b) { .sort(function (a, b) {
return (a.value < b.value ? 1 return (a.value < b.value ? 1
: (a.value === b.value ? 0 : -1)); : (a.value === b.value ? 0 : -1));
}); });
...@@ -408,8 +408,8 @@ morpheus.SortByValuesKey.prototype = { ...@@ -408,8 +408,8 @@ morpheus.SortByValuesKey.prototype = {
} }
var indexCounterPairs = []; var indexCounterPairs = [];
for (var i = 0; i < nInGroup && bottomIndex >= 0; i++, bottomIndex--, counter++) { for (var i = 0; i < nInGroup && bottomIndex >= 0; i++, bottomIndex--, counter++) {
indexCounterPairs.push([ bottomPairs[bottomIndex].index, indexCounterPairs.push([bottomPairs[bottomIndex].index,
counter ]); counter]);
} }
for (var i = indexCounterPairs.length - 1, j = 0; i >= 0; i--, j++) { for (var i = indexCounterPairs.length - 1, j = 0; i >= 0; i--, j++) {
var item_i = indexCounterPairs[i]; var item_i = indexCounterPairs[i];
...@@ -429,14 +429,14 @@ morpheus.SortByValuesKey.prototype = { ...@@ -429,14 +429,14 @@ morpheus.SortByValuesKey.prototype = {
delete this.modelIndexToValue; delete this.modelIndexToValue;
} }
}, },
getComparator : function() { getComparator: function () {
return this.c; return this.c;
}, },
getValue : function(i) { getValue: function (i) {
return this.modelIndexToValue ? this.modelIndexToValue[i] : this return this.modelIndexToValue ? this.modelIndexToValue[i] : this
.summaryFunction(this.rowView.setIndex(i)); .summaryFunction(this.rowView.setIndex(i));
}, },
setSortOrder : function(sortOrder) { setSortOrder: function (sortOrder) {
if (typeof sortOrder === 'string') { if (typeof sortOrder === 'string') {
sortOrder = morpheus.SortKey.SortOrder[sortOrder.toUpperCase()]; sortOrder = morpheus.SortKey.SortOrder[sortOrder.toUpperCase()];
} }
...@@ -450,10 +450,10 @@ morpheus.SortByValuesKey.prototype = { ...@@ -450,10 +450,10 @@ morpheus.SortByValuesKey.prototype = {
} }
}, },
getSortOrder : function() { getSortOrder: function () {
return this.sortOrder; return this.sortOrder;
}, },
toString : function() { toString: function () {
return 'values'; return 'values';
} }
}; };
...@@ -467,7 +467,7 @@ morpheus.SortByValuesKey.prototype = { ...@@ -467,7 +467,7 @@ morpheus.SortByValuesKey.prototype = {
* @param name * @param name
* This sort key name * This sort key name
*/ */
morpheus.SpecifiedModelSortOrder = function(modelIndices, nvisible, name) { morpheus.SpecifiedModelSortOrder = function (modelIndices, nvisible, name) {
this.nvisible = nvisible; this.nvisible = nvisible;
var modelIndexToValue = []; var modelIndexToValue = [];
for (var i = 0, length = modelIndices.length; i < length; i++) { for (var i = 0, length = modelIndices.length; i < length; i++) {
...@@ -478,27 +478,27 @@ morpheus.SpecifiedModelSortOrder = function(modelIndices, nvisible, name) { ...@@ -478,27 +478,27 @@ morpheus.SpecifiedModelSortOrder = function(modelIndices, nvisible, name) {
this.c = morpheus.SortKey.ASCENDING_COMPARATOR; this.c = morpheus.SortKey.ASCENDING_COMPARATOR;
}; };
morpheus.SpecifiedModelSortOrder.prototype = { morpheus.SpecifiedModelSortOrder.prototype = {
init : function(dataset) { init: function (dataset) {
}, },
getComparator : function(a, b) { getComparator: function (a, b) {
return this.c; return this.c;
}, },
getValue : function(i) { getValue: function (i) {
return this.modelIndexToValue[i]; return this.modelIndexToValue[i];
}, },
setSortOrder : function(sortOrder) { setSortOrder: function (sortOrder) {
this.sortOrder = sortOrder; this.sortOrder = sortOrder;
this.c = this.sortOrder === morpheus.SortKey.SortOrder.ASCENDING ? morpheus.SortKey.NUMBER_ASCENDING_COMPARATOR this.c = this.sortOrder === morpheus.SortKey.SortOrder.ASCENDING ? morpheus.SortKey.NUMBER_ASCENDING_COMPARATOR
: morpheus.SortKey.NUMBER_DESCENDING_COMPARATOR; : morpheus.SortKey.NUMBER_DESCENDING_COMPARATOR;
}, },
getSortOrder : function() { getSortOrder: function () {
return this.sortOrder; return this.sortOrder;
}, },
getName : function() { getName: function () {
return this.name; return this.name;
} }
}; };
morpheus.SortKey.keepExistingSortKeys = function(newSortKeys, existingSortKeys) { morpheus.SortKey.keepExistingSortKeys = function (newSortKeys, existingSortKeys) {
// keep MatchesOnTopSortKey and dendrogram // keep MatchesOnTopSortKey and dendrogram
// var existingOnTopSortKey = null; // var existingOnTopSortKey = null;
var existingSpecifiedSortKey = null; var existingSpecifiedSortKey = null;
...@@ -539,28 +539,28 @@ morpheus.SortKey.keepExistingSortKeys = function(newSortKeys, existingSortKeys) ...@@ -539,28 +539,28 @@ morpheus.SortKey.keepExistingSortKeys = function(newSortKeys, existingSortKeys)
* *
* @param values * @param values
*/ */
morpheus.SpecifiedGroupByKey = function(clusterIds) { morpheus.SpecifiedGroupByKey = function (clusterIds) {
this.clusterIds = clusterIds; this.clusterIds = clusterIds;
this.c = function(a, b) { this.c = function (a, b) {
return (a === b ? 0 : // Values are equal return (a === b ? 0 : // Values are equal
(a < b ? -1 : // (-0.0, 0.0) or (!NaN, NaN) (a < b ? -1 : // (-0.0, 0.0) or (!NaN, NaN)
1)); 1));
}; };
}; };
morpheus.SpecifiedGroupByKey.prototype = { morpheus.SpecifiedGroupByKey.prototype = {
init : function(dataset) { init: function (dataset) {
}, },
getComparator : function(a, b) { getComparator: function (a, b) {
return this.c; return this.c;
}, },
getValue : function(i) { getValue: function (i) {
return this.clusterIds[i]; return this.clusterIds[i];
}, },
setSortOrder : function(sortOrder) { setSortOrder: function (sortOrder) {
}, },
getSortOrder : function() { getSortOrder: function () {
}, },
getName : function() { getName: function () {
return 'Dendrogram Cut'; return 'Dendrogram Cut';
} }
}; };
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