diff --git a/js/morpheus-latest.min.js b/js/morpheus-latest.min.js index eef2ffea5b3de673bd8764fef7eb073508331c0c..9a6586f7f7ab78fc5468284a8723e7e63a767bfa 100644 --- a/js/morpheus-latest.min.js +++ b/js/morpheus-latest.min.js @@ -16,6 +16,6 @@ var colorScheme=this.colorScheme;colorScheme.setCurrentValue(this.value),context searchHtml.push(""),searchHtml.push("")),controller.options.toolbar.searchColumns&&(searchHtml.push('
'),searchHtml.push('
'),searchHtml.push('
'),searchHtml.push('
'),searchHtml.push(''),searchHtml.push('"),searchHtml.push("
"),searchHtml.push('
'),searchHtml.push("
"),searchHtml.push(""),searchHtml.push('
'),searchHtml.push('
'),searchHtml.push(''),searchHtml.push(''),searchHtml.push(''),searchHtml.push(''),searchHtml.push(""),searchHtml.push("
")),searchHtml.push('
'),searchHtml.push('
Values
'),searchHtml.push("
"),searchHtml.push('
'),searchHtml.push('
'),searchHtml.push("
"),searchHtml.push('"),searchHtml.push('"),searchHtml.push('
'),searchHtml.push('
'),searchHtml.push('
'),searchHtml.push("
"),searchHtml.push('
'),$(searchHtml.join("")).appendTo($search),controller.options.toolbar.searchValues||$search.find("[name=searchValuesDiv]").css("display","none");var $buttons=$search.find("[name=buttons]"),$tools=$('
');$tools.on("submit",function(e){e.preventDefault()});var toolbarHtml=[];controller.options.toolbar.zoom&&(toolbarHtml.push(''),toolbarHtml.push(''),toolbarHtml.push(''),toolbarHtml.push('')),toolbarHtml.push('
'),controller.options.toolbar.sort&&toolbarHtml.push(''),controller.options.toolbar.options&&toolbarHtml.push(''),toolbarHtml.push('
'),controller.options.toolbar.saveImage&&toolbarHtml.push(''),controller.options.toolbar.saveDataset&&toolbarHtml.push(''),controller.options.toolbar.openFile&&toolbarHtml.push(''),toolbarHtml.push('
'),controller.options.toolbar.filter&&toolbarHtml.push(''),"undefined"!=typeof Plotly&&toolbarHtml.push('');var tools=[{tool:new morpheus.HClusterTool},{tool:new morpheus.MarkerSelection},{tool:new morpheus.NearestNeighbors},{tool:new morpheus.NewHeatMapTool},null,{tool:new morpheus.AdjustDataTool},{tool:new morpheus.CollapseDatasetTool},{tool:new morpheus.CreateAnnotation},{tool:new morpheus.SimilarityMatrixTool},{tool:new morpheus.TransposeTool},{tool:new morpheus.WordCloudTool}];if(this.getToolByName=function(name){for(var i=0;i'),toolbarHtml.push(''),toolbarHtml.push('")}toolbarHtml.push('
'),controller.options.toolbar.colorKey&&(toolbarHtml.push('
'),toolbarHtml.push(''),toolbarHtml.push('"),toolbarHtml.push("
")),$search.appendTo($el.find("[name=lineOneColumn]"));var $toolbarForm=$(toolbarHtml.join(""));$toolbarForm.appendTo($buttons),controller.options.$help&&controller.options.$help.appendTo($buttons),$('
').appendTo($el.find("[name=lineTwoColumn]")),$el.prependTo(controller.$content);var $tools=$el.find("[name=tools]");this.$tip=$el.find("[name=tip]"),$tools.on("click","li > a",function(e){e.preventDefault();var index=parseInt($(this).attr("name"));tools[index].tool?morpheus.HeatMap.showTool(tools[index].tool,controller):tools[index].action()}),this.defaultRowMatchMode="contains",this.defaultColumnMatchMode="contains";var $rowSearchOptions=$el.find("[name=rowSearchOptions]");$rowSearchOptions.on("click","li > a",function(e){e.preventDefault(),_this.defaultRowMatchMode=$(this).attr("name"),$rowSearchOptions.find("li").removeClass("active"),$(this).parent("li").addClass("active"),_this.search(!0),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"rowSearchMatchMode"})});var $columnSearchOptions=$el.find("[name=columnSearchOptions]");$columnSearchOptions.on("click","li > a",function(e){e.preventDefault(),_this.defaultColumnMatchMode=$(this).attr("name"),$columnSearchOptions.find("li").removeClass("active"),$(this).parent("li").addClass("active"),_this.search(!1),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"columnSearchMatchMode"})});var filterModal=[],filterLabelId=_.uniqueId("morpheus");filterModal.push('");var $filterModal=$(filterModal.join(""));$filterModal.on("mousewheel",function(e){e.stopPropagation()});var $filter=$("
");$filter.appendTo($filterModal.find(".modal-body")),$filterModal.appendTo($el);var filterHtml=[];filterHtml.push('
'),filterHtml.push('
');var $filterChooser=$(filterHtml.join(""));$filterChooser.appendTo($filter);var columnFilterUI=new morpheus.FilterUI(controller.getProject(),!0),rowFilterUI=new morpheus.FilterUI(controller.getProject(),!1);controller.getProject().getRowFilter().on("focus",function(e){$filterChooser.find("[value=rows]").prop("checked",!0),columnFilterUI.$div.hide(),rowFilterUI.$div.show(),$filterModal.modal("show"),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"rowFilter"})}),controller.getProject().getColumnFilter().on("focus",function(e){$filterChooser.find("[value=columns]").prop("checked",!0),columnFilterUI.$div.show(),rowFilterUI.$div.hide(),$filterModal.modal("show"),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"columnFilter"})}),rowFilterUI.$div.appendTo($filter),columnFilterUI.$div.appendTo($filter),columnFilterUI.$div.css("display","none");var $filterRadio=$filterChooser.find("[name=rowsOrColumns]");$filterRadio.on("change",function(e){var val=$filterRadio.filter(":checked").val();"columns"===val?(columnFilterUI.$div.show(),rowFilterUI.$div.hide()):(columnFilterUI.$div.hide(),rowFilterUI.$div.show()),e.preventDefault()}),$el.find("[name=filterButton]").on("click",function(){$filterModal.modal("show"),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"filter"})}),$el.find('[data-toggle="tooltip"]').tooltip({placement:"bottom",container:"body",trigger:"hover"}).on("click",function(){$(this).tooltip("hide")});var $key=$el.find("[name=key]"),$keyContent=$el.find("[name=keyContent]");$key.dropdown().parent().on("show.bs.dropdown",function(){new morpheus.HeatMapColorSchemeLegend(controller,$keyContent),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"colorKey"})}),$el.find("[name=openFile]").on("click",function(){morpheus.HeatMap.showTool(new morpheus.OpenFileTool({customUrls:controller._customUrls}),controller)}),$el.find("[name=saveImage]").on("click",function(){morpheus.HeatMap.showTool(new morpheus.SaveImageTool,controller)}),$el.find("[name=saveDataset]").on("click",function(){morpheus.HeatMap.showTool(new morpheus.SaveDatasetTool,controller)}),$el.find("[name=chart]").on("click",function(){new morpheus.ChartTool2({project:controller.getProject(),getVisibleTrackNames:_.bind(controller.getVisibleTrackNames,controller)}),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"chart"})});var _this=this;$el.find("[name=tutorial]").on("click",function(){window.open("http://www.broadinstitute.org/cancer/software/morpheus/tutorial.html"),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"tutorial"})}),this.$previousColumnMatch=$el.find("[name=previousColumnMatch]"),this.$nextColumnMatch=$el.find("[name=nextColumnMatch]"),this.$previousRowMatch=$el.find("[name=previousRowMatch]"),this.$nextRowMatch=$el.find("[name=nextRowMatch]"),this.$dimensionsLabel=$el.find("[name=dim]"),this.$columnTextField=$el.find("[name=searchColumns]"),this.$valueTextField=$el.find("[name=searchValues]"),this.$selectionLabel=$el.find("[name=selection]"),this.$rowTextField=$el.find("[name=searchRows]"),this.$columnMatchesToTop=$el.find("[name=columnMatchesToTop]"),this.$rowMatchesToTop=$el.find("[name=rowMatchesToTop]"),this.$rowSearchDiv=$el.find("[name=rowSearchDiv]"),this.$columnSearchDiv=$el.find("[name=columnSearchDiv]"),this.$searchRowDendrogramWrapper=$el.find("[name=searchRowDendrogramWrapper]"),this.$searchRowDendrogram=$el.find("[name=searchRowDendrogram]"),this.$searchResultsRowDendrogram=$el.find("[name=searchResultsRowDendrogram]"),this.$searchColumnDendrogramWrapper=$el.find("[name=searchColumnDendrogramWrapper]"),this.$searchColumnDendrogram=$el.find("[name=searchColumnDendrogram]"),this.$searchResultsColumnDendrogram=$el.find("[name=searchResultsColumnDendrogram]"),controller.on("dendrogramAnnotated",function(e){(e.isColumns?_this.$searchColumnDendrogramWrapper:_this.$searchRowDendrogramWrapper).show()}),controller.on("dendrogramChanged",function(e){(e.isColumns?_this.$searchColumnDendrogramWrapper:_this.$searchRowDendrogramWrapper).hide()});var project=controller.getProject();morpheus.Util.autosuggest({$el:this.$rowTextField,filter:function(terms,cb){var indices=[],meta=project.getSortedFilteredDataset().getRowMetadata();controller.getVisibleTrackNames(!1).forEach(function(name){indices.push(morpheus.MetadataUtil.indexOf(meta,name))}),meta=new morpheus.MetadataModelColumnView(meta,indices),morpheus.MetadataUtil.autocomplete(meta)(terms,cb)},select:function(){_this.search(!0)}}),this.$rowTextField.on("keyup",_.debounce(function(e){13===e.which&&e.preventDefault(),_this.search(!0),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"searchRows"})},500)),morpheus.Util.autosuggest({$el:this.$columnTextField,filter:function(terms,cb){var indices=[],meta=project.getSortedFilteredDataset().getColumnMetadata();controller.getVisibleTrackNames(!0).forEach(function(name){indices.push(morpheus.MetadataUtil.indexOf(meta,name))}),meta=new morpheus.MetadataModelColumnView(meta,indices),morpheus.MetadataUtil.autocomplete(meta)(terms,cb)},select:function(){_this.search(!1)}}),this.$columnTextField.on("keyup",_.debounce(function(e){13===e.which&&e.preventDefault(),_this.search(!1),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"searchColumns"})},500)),this.$searchRowDendrogram.on("keyup",_.debounce(function(e){13===e.which&&e.preventDefault(),_this.searchDendrogram(!1),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"searchRowDendrogram"})},500)),this.$searchColumnDendrogram.on("keyup",_.debounce(function(e){13===e.which&&e.preventDefault(),_this.searchDendrogram(!0),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"searchColumnDendrogram"})},500)),morpheus.Util.autosuggest({$el:this.$valueTextField,filter:function(terms,cb){morpheus.DatasetUtil.autocompleteValues(project.getSortedFilteredDataset())(terms,cb)},select:function(){searchValues()}}),this.$valueTextField.on("keyup",_.debounce(function(e){13===e.which&&(_this.$valueTextField.autocomplete("close"),e.preventDefault()),searchValues()},500)),$toolbarForm.on("submit",function(e){e.preventDefault()}),$buttons.on("click","[name=in]",function(e){e.preventDefault(),controller.zoom(!0),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"zoomIn"})}),$buttons.on("click","[name=out]",function(e){e.preventDefault(),controller.zoom(!1),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"zoomOut"})}),$buttons.on("click","[name=options]",function(e){e.preventDefault(),controller.showOptions(),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"options"})}),$buttons.on("click","[name=sort]",function(e){e.preventDefault(),new morpheus.SortDialog(project),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"sort"})}),$buttons.on("click","[name=fit]",function(e){e.preventDefault(),controller.fitToWindow(!0),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"fit"})}),$buttons.on("click","[name=resetZoom]",function(e){e.preventDefault(),controller.resetZoom(),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"resetZoom"})}),this.$el=$el;var updateFilterStatus=function(){controller.getProject().getRowFilter().isEnabled()||controller.getProject().getColumnFilter().isEnabled()?_this.$el.find("[name=filterButton]").addClass("btn-primary"):_this.$el.find("[name=filterButton]").removeClass("btn-primary")};updateFilterStatus(),this.$columnMatchesToTop.on("click",function(e){e.preventDefault();var $this=$(this);$this.toggleClass("btn-primary");var sortKeys=project.getColumnSortKeys();if(sortKeys=sortKeys.filter(function(key){return key instanceof morpheus.SpecifiedModelSortOrder&&"dendrogram"===key.name}),$this.hasClass("btn-primary")){var key=new morpheus.MatchesOnTopSortKey(project,_this.columnSearchResultModelIndices,"matches on top");sortKeys.splice(0,0,key),controller.scrollLeft(0)}_this.searching=!0,project.setColumnSortKeys(sortKeys,!0),_this._updateSearchIndices(!0),_this.searching=!1,morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"columnMatchesToTop"})}),this.$rowMatchesToTop.on("click",function(e){e.preventDefault();var $this=$(this);$this.toggleClass("btn-primary");var sortKeys=project.getRowSortKeys();if(sortKeys=sortKeys.filter(function(key){return key instanceof morpheus.SpecifiedModelSortOrder&&"dendrogram"===key.name}),$this.hasClass("btn-primary")){var key=new morpheus.MatchesOnTopSortKey(project,_this.rowSearchResultModelIndices,"matches on top");sortKeys.splice(0,0,key),controller.scrollTop(0)}_this.searching=!0,project.setRowSortKeys(sortKeys,!0),_this._updateSearchIndices(!1),_this.searching=!1,morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"rowMatchesToTop"})}),project.on("rowSortOrderChanged.morpheus",function(e){_this.searching||(_this._updateSearchIndices(!1),_this.$rowMatchesToTop.removeClass("btn-primary"))}),project.on("columnSortOrderChanged.morpheus",function(e){_this.searching||(_this._updateSearchIndices(!0),_this.$columnMatchesToTop.removeClass("btn-primary"))}),controller.getProject().on("rowFilterChanged.morpheus",function(e){_this.search(!0),updateFilterStatus()}),controller.getProject().on("columnFilterChanged.morpheus",function(e){_this.search(!1),updateFilterStatus()}),controller.getProject().on("datasetChanged.morpheus",function(){_this.search(!0),_this.search(!1),updateFilterStatus()}),controller.getProject().getRowSelectionModel().on("selectionChanged.morpheus",function(){_this.updateSelectionLabel()}),controller.getProject().getColumnSelectionModel().on("selectionChanged.morpheus",function(){_this.updateSelectionLabel()}),this.rowSearchResultViewIndicesSorted=null,this.currentRowSearchIndex=0,this.columnSearchResultViewIndicesSorted=null,this.currentColumnSearchIndex=-1,this.$previousColumnMatch.on("click",function(){_this.currentColumnSearchIndex--,_this.currentColumnSearchIndex<0&&(_this.currentColumnSearchIndex=_this.columnSearchResultViewIndicesSorted.length-1),controller.scrollLeft(controller.getHeatMapElementComponent().getColumnPositions().getPosition(_this.columnSearchResultViewIndicesSorted[_this.currentColumnSearchIndex])),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"previousColumnMatch"})}),this.$previousRowMatch.on("click",function(){_this.currentRowSearchIndex--,_this.currentRowSearchIndex<0&&(_this.currentRowSearchIndex=_this.rowSearchResultViewIndicesSorted.length-1),controller.scrollTop(controller.getHeatMapElementComponent().getRowPositions().getPosition(_this.rowSearchResultViewIndicesSorted[_this.currentRowSearchIndex])),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"previousRowMatch"})}),this.$nextColumnMatch.on("click",function(){_this.next(!0),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"nextColumnMatch"})}),this.$nextRowMatch.on("click",function(){_this.next(!1),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"nextRowMatch"})}),this.updateDimensionsLabel(),this.updateSelectionLabel()},morpheus.HeatMapToolBar.HIGHLIGHT_SEARCH_MODE=0,morpheus.HeatMapToolBar.FILTER_SEARCH_MODE=1,morpheus.HeatMapToolBar.MATCHES_TO_TOP_SEARCH_MODE=2,morpheus.HeatMapToolBar.SELECT_MATCHES_SEARCH_MODE=3,morpheus.HeatMapToolBar.prototype={quickColumnFilter:!1,searching:!1,rowSearchMode:morpheus.HeatMapToolBar.SELECT_MATCHES_SEARCH_MODE,columnSearchMode:morpheus.HeatMapToolBar.SELECT_MATCHES_SEARCH_MODE,_updateSearchIndices:function(isColumns){var project=this.controller.getProject();if(isColumns){for(var viewIndices=[],modelIndices=this.columnSearchResultModelIndices,i=0,length=modelIndices.length;length>i;i++){var index=project.convertModelColumnIndexToView(modelIndices[i]);-1!==index&&viewIndices.push(index)}viewIndices.sort(function(a,b){return b>a?-1:1}),this.columnSearchResultViewIndicesSorted=viewIndices,this.currentColumnSearchIndex=-1}else{for(var viewIndices=[],modelIndices=this.rowSearchResultModelIndices,i=0,length=modelIndices.length;length>i;i++){var index=project.convertModelRowIndexToView(modelIndices[i]);-1!==index&&viewIndices.push(index)}viewIndices.sort(function(a,b){return b>a?-1:1}),this.rowSearchResultViewIndicesSorted=viewIndices,this.currentRowSearchIndex=-1}},next:function(isColumns){var controller=this.controller;isColumns?(this.currentColumnSearchIndex++,this.currentColumnSearchIndex>=this.columnSearchResultViewIndicesSorted.length&&(this.currentColumnSearchIndex=0),controller.scrollLeft(controller.getHeatMapElementComponent().getColumnPositions().getPosition(this.columnSearchResultViewIndicesSorted[this.currentColumnSearchIndex]))):(this.currentRowSearchIndex++,this.currentRowSearchIndex>=this.rowSearchResultViewIndicesSorted.length&&(this.currentRowSearchIndex=0),controller.scrollTop(controller.getHeatMapElementComponent().getRowPositions().getPosition(this.rowSearchResultViewIndicesSorted[this.currentRowSearchIndex])))},setSearchText:function(options){var $tf=options.isColumns?this.$columnTextField:this.$rowTextField,existing=options.append?$.trim($tf.val()):"";""!==existing&&(existing+=" "),options.onTop&&(options.isColumns?this.$columnMatchesToTop.addClass("btn-primary"):this.$rowMatchesToTop.addClass("btn-primary")),$tf.val(existing+options.text),this.search(!options.isColumns),options.scrollTo&&this.next(options.isColumns)},updateDimensionsLabel:function(){var p=this.controller.getProject(),d=p.getFullDataset(),f=p.getSortedFilteredDataset(),text="showing "+morpheus.Util.intFormat(f.getRowCount())+"/"+morpheus.Util.intFormat(d.getRowCount())+" rows, "+morpheus.Util.intFormat(f.getColumnCount())+"/"+morpheus.Util.intFormat(d.getColumnCount())+" columns";this.$dimensionsLabel.html(text)},updateSelectionLabel:function(){var nc=this.controller.getProject().getColumnSelectionModel().count(),nr=this.controller.getProject().getRowSelectionModel().count(),text=[];text.push(morpheus.Util.intFormat(nr)+" row"),1!==nr&&text.push("s"),text.push(", "),text.push(morpheus.Util.intFormat(nc)+" column"),1!==nc&&text.push("s"),text.push(" selected"),this.$selectionLabel.html(text.join(""))},searchDendrogram:function(isColumns){var text=$.trim(isColumns?this.$searchColumnDendrogram.val():this.$searchRowDendrogram.val()),dendrogram=isColumns?this.controller.columnDendrogram:this.controller.rowDendrogram,$searchResults=isColumns?this.$searchResultsColumnDendrogram:this.$searchResultsRowDendrogram,matches=morpheus.AbstractDendrogram.search(dendrogram.tree.rootNode,text);if(-1===matches?$searchResults.html(""):$searchResults.html(matches+" match"+(1===matches?"":"es")),0>=matches){var positions=isColumns?this.controller.getHeatMapElementComponent().getColumnPositions():this.controller.getHeatMapElementComponent().getRowPositions();positions.setSquishedIndices(null),isColumns?this.controller.getProject().setGroupColumns([],!0):this.controller.getProject().setGroupRows([],!0),positions.setSize(isColumns?this.controller.getFitColumnSize():this.controller.getFitRowSize())}else morpheus.AbstractDendrogram.squishNonSearchedNodes(this.controller,isColumns);this.controller.updateDataset(),this.controller.revalidate()},search:function(isRows){this.searching=!0;for(var isMatchesOnTop=isRows?this.$rowMatchesToTop.hasClass("btn-primary"):this.$columnMatchesToTop.hasClass("btn-primary"),controller=this.controller,project=controller.getProject(),sortKeys=isRows?project.getRowSortKeys():project.getColumnSortKeys(),keyIndex=-1,i=0;ii;i++){var viewIndex=searchResultViewIndices[i];searchResultsModelIndices.push(isRows?project.convertViewRowIndexToModel(viewIndex):project.convertViewColumnIndexToModel(viewIndex))}if(null!==searchResultViewIndices&&isMatchesOnTop){var key=new morpheus.MatchesOnTopSortKey(project,searchResultsModelIndices,"matches on top");sortKeys=sortKeys.filter(function(key){return!(key instanceof morpheus.MatchesOnTopSortKey)}),searchResultViewIndices=key.indices,sortKeys.splice(0,0,key),isRows?project.setRowSortKeys(sortKeys,!1):project.setColumnSortKeys(sortKeys,!1)}var searchResultsViewIndicesSet=new morpheus.Set;if(null!=searchResultViewIndices)for(var i=0,length=searchResultViewIndices.length;length>i;i++){var viewIndex=searchResultViewIndices[i];searchResultsViewIndicesSet.add(viewIndex)}null==searchResultViewIndices&&(searchResultViewIndices=[]),isRows?(this.rowSearchResultModelIndices=searchResultsModelIndices,this.rowSearchResultViewIndicesSorted=searchResultViewIndices.sort(function(a,b){return b>a?-1:1}),this.currentRowSearchIndex=-1):(this.columnSearchResultModelIndices=searchResultsModelIndices,this.columnSearchResultViewIndicesSorted=searchResultViewIndices.sort(function(a,b){return b>a?-1:1}),this.currentColumnSearchIndex=-1),(isRows?project.getRowSelectionModel():project.getColumnSelectionModel()).setViewIndices(searchResultsViewIndicesSet,!0),isMatchesOnTop&&(isRows?project.setRowSortKeys(morpheus.SortKey.keepExistingSortKeys(sortKeys,project.getRowSortKeys()),!0):project.setColumnSortKeys(morpheus.SortKey.keepExistingSortKeys(sortKeys,project.getColumnSortKeys()),!0)),this.updateDimensionsLabel(),this.updateSelectionLabel(),this.searching=!1}},morpheus.HeatMapTooltipProvider=function(heatMap,rowIndex,columnIndex,options,separator,quick){var dataset=heatMap.project.getSortedFilteredDataset(),tipText=[];if(quick||options.value&&_.each(options.value,function(pair){if(tipText.length>0&&tipText.push(separator),tipText.push(pair.name),tipText.push(": "),_.isArray(pair.value))for(var i=0;i0&&tipText.push(", "),tipText.push(pair.value[i]);else tipText.push(pair.value);tipText.push("")}),-1!==rowIndex&&-1!==columnIndex){for(var i=0,nseries=dataset.getSeriesCount();nseries>i;i++)morpheus.HeatMapTooltipProvider._matrixValueToString(dataset,rowIndex,columnIndex,i,tipText,separator,options.showSeriesNameInTooltip||i>0);if(quick){var quickRowTracks=heatMap.rowTracks.filter(function(t){return t.settings.inlineTooltip});morpheus.HeatMapTooltipProvider._tracksToString(options,quickRowTracks,dataset.getRowMetadata(),rowIndex,tipText,separator),morpheus.HeatMapTooltipProvider._tracksToString(options,heatMap.columnTracks.filter(function(t){return t.settings.inlineTooltip}),dataset.getColumnMetadata(),columnIndex,tipText,separator)}}if(quick){if(null!=options.name){var metadata=-1!==rowIndex?dataset.getRowMetadata():dataset.getColumnMetadata(),vector=metadata.getByName(options.name),track=heatMap.getTrack(options.name,-1!==columnIndex),colorByName=null!=track?track.settings.colorByField:null,additionalVector=null!=colorByName?metadata.getByName(colorByName):null;morpheus.HeatMapTooltipProvider.vectorToString(vector,-1!==rowIndex?rowIndex:columnIndex,tipText,separator,additionalVector)}}else-1!==rowIndex&&morpheus.HeatMapTooltipProvider._metadataToString(options,heatMap.rowTracks,dataset.getRowMetadata(),rowIndex,tipText,separator),-1!==columnIndex&&morpheus.HeatMapTooltipProvider._metadataToString(options,heatMap.columnTracks,dataset.getColumnMetadata(),columnIndex,tipText,separator);var rowNodes=[],columnNodes=[],selectedRowNodes=[],selectedColumnNodes=[];if(options.rowNodes&&(rowNodes=options.rowNodes),options.columnNodes&&(columnNodes=options.columnNodes),!quick){if(heatMap.rowDendrogram&&(selectedRowNodes=_.values(heatMap.rowDendrogram.selectedRootNodeIdToNode)),heatMap.columnDendrogram&&(selectedColumnNodes=_.values(heatMap.columnDendrogram.selectedRootNodeIdToNode)),selectedRowNodes.length>0&&rowNodes.length>0){var nodeIds={};_.each(selectedRowNodes,function(n){nodeIds[n.id]=!0}), rowNodes=_.filter(rowNodes,function(n){return void 0===nodeIds[n.id]})}if(selectedColumnNodes.length>0&&columnNodes.length>0){var nodeIds={};_.each(selectedColumnNodes,function(n){nodeIds[n.id]=!0}),columnNodes=_.filter(columnNodes,function(n){return void 0===nodeIds[n.id]})}}return morpheus.HeatMapTooltipProvider._nodesToString(tipText,rowNodes,null,separator),morpheus.HeatMapTooltipProvider._nodesToString(tipText,columnNodes,null,separator),quick||(selectedRowNodes.length>0&&morpheus.HeatMapTooltipProvider._nodesToString(tipText,selectedRowNodes,heatMap.rowDendrogram._selectedNodeColor,separator),selectedColumnNodes.length>0&&morpheus.HeatMapTooltipProvider._nodesToString(tipText,selectedColumnNodes,heatMap.columnDendrogram._selectedNodeColor,separator)),tipText.join("")},morpheus.HeatMapTooltipProvider._matrixValueToString=function(dataset,rowIndex,columnIndex,seriesIndex,tipText,separator,showSeriesNameInTooltip){var val=dataset.getValue(rowIndex,columnIndex,seriesIndex);if(null!=val)if(val.toObject||!_.isNumber(val)){var obj=val.toObject?val.toObject():val,keys=_.keys(obj);if(0===keys.length){var v=morpheus.Util.formatObject(obj);tipText.length>0&&tipText.push(separator),showSeriesNameInTooltip&&(tipText.push(dataset.getName(seriesIndex)),tipText.push(": ")),tipText.push(""),tipText.push(v),tipText.push("")}else for(var i=0,nkeys=keys.length;nkeys>i;i++){var key=keys[i];if("__v"!==key){var v=morpheus.Util.formatObject(obj[key]);tipText.length>0&&tipText.push(separator),tipText.push(key),tipText.push(": "),tipText.push(v),tipText.push("")}}}else tipText.length>0&&tipText.push(separator),showSeriesNameInTooltip&&(tipText.push(dataset.getName(seriesIndex)),tipText.push(": ")),tipText.push(""),tipText.push(morpheus.Util.nf(val)),tipText.push("")},morpheus.HeatMapTooltipProvider.vectorToString=function(vector,index,tipText,separator,additionalVector){var arrayValueToString=function(arrayFieldName,arrayVal){if(null!=arrayVal)if(null!=arrayFieldName&&(tipText.length>0&&tipText.push(separator),tipText.push(arrayFieldName)),arrayVal.toObject){tipText.push(" ");var obj=arrayVal.toObject(),keys=_.keys(obj);_.each(keys,function(key){var subVal=obj[key];null!=subVal&&""!=subVal&&(tipText.length>0&&tipText.push(separator),tipText.push(key),tipText.push(": "),tipText.push(morpheus.Util.formatObject(subVal)),tipText.push(""))})}else tipText.push(": "),tipText.push(morpheus.Util.formatObject(arrayVal)),tipText.push("")};if(null!=vector){var primaryVal=vector.getValue(index);if(null!=primaryVal&&""!=primaryVal){var primaryFields=vector.getProperties().get(morpheus.VectorKeys.FIELDS);if(null!=primaryFields){var visibleFieldIndices=vector.getProperties().get(morpheus.VectorKeys.VISIBLE_FIELDS);void 0===visibleFieldIndices&&(visibleFieldIndices=morpheus.Util.seq(primaryFields.length));var additionalFieldNames=null!=additionalVector?additionalVector.getProperties().get(morpheus.VectorKeys.FIELDS):null,additionalVal=null!=additionalFieldNames?additionalVector.getValue(index):null;tipText.length>0&&tipText.push(separator),tipText.push(vector.getName());for(var j=0;j0&&tipText.push(separator),tipText.push(additionalVector.getName());for(var j=0;j0&&tipText.push(separator),tipText.push(vector.getName()),tipText.push(": "),tipText.push(morpheus.Util.formatObject(primaryVal)),tipText.push("")}}},morpheus.HeatMapTooltipProvider._tracksToString=function(options,tracks,metadata,index,tipText,separator){for(var i=0;ii;i++){var track=tracks[i];track.isVisible()&&track.isShowTooltip()&&(tracks[i].name===options.name?filtered.splice(0,0,track):filtered.push(track))}morpheus.HeatMapTooltipProvider._tracksToString(options,filtered,metadata,index,tipText,separator)},morpheus.HeatMapTooltipProvider._nodesToString=function(tipText,nodes,color,separator){var renderField=function(name,value){if(null!=value){if(tipText.length>0&&tipText.push(separator),color&&tipText.push(''),tipText.push(name),tipText.push(": "),_.isArray(value))for(var i=0;i0&&tipText.push(", "),tipText.push(morpheus.Util.formatObject(value[i]));else tipText.push(morpheus.Util.formatObject(value));tipText.push(""),color&&tipText.push("")}};_.each(nodes,function(node){if(node.info)for(var name in node.info){var value=node.info[name];renderField(name,value)}renderField("depth",node.depth);var nLeafNodes=1+Math.abs(node.maxIndex-node.minIndex);nLeafNodes>0&&renderField("# of leaf nodes",nLeafNodes)})},morpheus.HeatMapTrackColorLegend=function(tracks,colorModel){morpheus.AbstractCanvas.call(this,!1),this.tracks=tracks,this.colorModel=colorModel,this.canvas.style.position=""},morpheus.HeatMapTrackColorLegend.prototype={getPreferredSize:function(){var tracks=this.tracks,colorModel=this.colorModel,xpix=0,ypix=0,maxYPix=0,canvas=this.canvas,context=canvas.getContext("2d");context.font="12px "+morpheus.CanvasUtil.FONT_NAME;for(var i=0;i0?maxYPix+30:0}},draw:function(clip,context){for(var tracks=this.tracks,colorModel=this.colorModel,xpix=0,i=0;i0?maxYPix+30:0}},draw:function(clip,context){var tracks=this.tracks,shapeModel=this.shapeModel,xpix=0,ypix=0;context.textAlign="left",context.textBaseline="top",context.font="12px "+morpheus.CanvasUtil.FONT_NAME,context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,context.strokeStyle="black";for(var i=0;i'),html.push(''),html.push('"),html.push(""),this.$el=$(html.join("")),this.$el.find("button").on("click",function(e){e.stopImmediatePropagation()}),this.$el.find("[name=contact]").on("click",function(e){e.preventDefault(),e.stopPropagation(),e.stopImmediatePropagation(),window.open("mailto:morpheus@broadinstitute.org"),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"contact"})}),this.$el.find("[name=tutorial]").on("click",function(e){e.preventDefault(),e.stopPropagation(),e.stopImmediatePropagation(),window.open(morpheus.Util.URL+"tutorial.html"),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"tutorial"})}),this.$el.find("[name=linking]").on("click",function(e){e.preventDefault(),e.stopPropagation(),e.stopImmediatePropagation(),window.open(morpheus.Util.URL+"linking.html"),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"linking"})}),this.$el.find("[name=source]").on("click",function(e){e.preventDefault(),e.stopPropagation(),e.stopImmediatePropagation(),window.open("https://github.com/joshua-gould/morpheus.js"),morpheus.Util.trackEvent({eventCategory:"ToolBar",eventAction:"source"})})},morpheus.LegendWithStops=function(){morpheus.AbstractCanvas.call(this,!1),this.setBounds({width:300,height:40});var that=this;this.hammer=morpheus.Util.hammer(this.canvas,["pan","tap","press"]).on("panmove",function(event){if(-1!==that.panStartSelectedIndex){var position=morpheus.CanvasUtil.getMousePos(event.target,event),fraction=that.fractionToStopPix.invert(position.x);fraction=Math.max(0,fraction),fraction=Math.min(1,fraction),that.trigger("moved",{fraction:fraction})}}).on("panstart",function(event){that.panStartSelectedIndex=that.findIndexForPosition(morpheus.CanvasUtil.getMousePos(event.target,event,!0))}).on("panend",function(event){that.panStartSelectedIndex=-1}).on("tap",function(event){var position=morpheus.CanvasUtil.getMousePos(event.target,event);if(event.tapCount>1){var fraction=that.fractionToStopPix.invert(position.x);that.trigger("added",{fraction:fraction})}else that.selectedIndex=that.findIndexForPosition(position),that.trigger("selectedIndex",{selectedIndex:that.selectedIndex})}),$(this.canvas).on("keydown",function(e){8!=e.which&&46!=e.which||-1===that.selectedIndex||(that.trigger("delete"),e.preventDefault(),e.stopPropagation(),e.stopImmediatePropagation())})},morpheus.LegendWithStops.prototype={selectedIndex:-1,border:7,stopHalfSize:5,panStartSelectedIndex:-1,destroy:function(){$(this.canvas).off("keyup"),this.hammer.destroy()},setSelectedIndex:function(index){this.panStartSelectedIndex=-1},findIndexForPosition:function(position){if(position.y>=22)for(var i=0,length=this.fractions.length;length>i;i++){var pix=this.fractionToStopPix(this.fractions[i]),start=pix-this.stopHalfSize,end=pix+this.stopHalfSize;if(position.x>=start&&position.x<=end)return i}return-1},draw:function(fractions,colors,stepped,fractionToStopPix){this.fractions=fractions,this.colors=colors,this.stepped=stepped,this.fractionToStopPix=fractionToStopPix;var context=this.canvas.getContext("2d");morpheus.CanvasUtil.resetTransform(context),context.clearRect(0,0,this.getUnscaledWidth(),this.getUnscaledHeight()),context.translate(this.border,0),morpheus.HeatMapColorSchemeLegend.draw(context,fractions,colors,this.getUnscaledWidth()-2*this.border,this.getUnscaledHeight()-20,stepped),context.translate(-this.border,0),context.lineWidth=1,context.strokeStyle="Grey",context.strokeRect(this.border,0,this.getUnscaledWidth()-2*this.border,this.getUnscaledHeight()-20);for(var i=0;i0&&fractions[i]===fractions[i-1])){context.fillStyle=colors[i];var pix=fractionToStopPix(fractions[i]);context.fillRect(pix-this.stopHalfSize,22,2*this.stopHalfSize,2*this.stopHalfSize),this.selectedIndex===i?(context.lineWidth=2,context.strokeStyle="black"):(context.lineWidth=1,context.strokeStyle="Grey"),context.strokeRect(pix-this.stopHalfSize,22,2*this.stopHalfSize,2*this.stopHalfSize)}}},morpheus.Util.extend(morpheus.LegendWithStops,morpheus.AbstractCanvas),morpheus.Util.extend(morpheus.LegendWithStops,morpheus.Events),morpheus.Popup={},morpheus.Popup.initted=!1,morpheus.Popup.init=function(){if(!morpheus.Popup.initted){var client=new Clipboard("a[name=Copy]",{text:function(trigger){var event={clipboardData:{setData:function(dataType,data){this.data=data}}};return morpheus.Popup.popupCallback(event,"Copy"),morpheus.Popup.hide(),event.clipboardData.data}});morpheus.Popup.client=client,morpheus.Popup.initted=!0,morpheus.Popup.$popupDiv=$(document.createElement("div")),morpheus.Popup.$popupDiv.css("position","absolute").css("zIndex",999).addClass("dropdown clearfix"),morpheus.Popup.$contextMenu=$(document.createElement("ul")),morpheus.Popup.$contextMenu.addClass("dropdown-menu").css("display","block").css("position","static").css("margin-bottom","5px"),morpheus.Popup.$contextMenu.appendTo(morpheus.Popup.$popupDiv),morpheus.Popup.$contextMenu.on("click","a",function(e){e.preventDefault();var $this=$(this),name=$.trim($this.text());"Copy"!==name&&(morpheus.Popup.popupCallback(e,name),morpheus.Popup.hide())})}},morpheus.Popup.popupInDom=!1,morpheus.Popup.hidePopupMenu=function(e){morpheus.Popup.component==e.target&&(e.preventDefault(),e.stopPropagation()),morpheus.Popup.hide()},morpheus.Popup.hide=function(){morpheus.Popup.$popupDiv.hide(),$(document.body).off("mousedown",morpheus.Popup.hidePopupMenu),morpheus.Popup.popupCallback=null,morpheus.Popup.component=null},morpheus.Popup.showPopup=function(menuItems,position,component,callback){if(morpheus.Popup.init(),morpheus.Popup.component==component)return void morpheus.Popup.hide();morpheus.Popup.popupCallback=callback,morpheus.Popup.component=component;for(var html=[],i=0,length=menuItems.length;length>i;i++){var item=menuItems[i];item.header?html.push('"):item.separator?html.push('
  • '):(html.push('
  • '),item.checked&&html.push(''),html.push(item.name),item.icon&&html.push(''),html.push(""),html.push("
    • "))}morpheus.Popup.$contextMenu.html(html.join("")),morpheus.Popup.popupInDom||(morpheus.Popup.popupInDom=!0,morpheus.Popup.$popupDiv.appendTo($(document.body))),morpheus.Popup.$popupDiv.css({display:"block",left:position.x,top:position.y}),morpheus.Popup.$popupDiv.show();var $body=$(document.body);$body.off("mousedown",morpheus.Popup.hidePopupMenu),window.setTimeout(function(){$body.on("mousedown",function(e){var $target=$(e.target);"popup-item"!==$target.data("type")&&morpheus.Popup.hidePopupMenu(e)})},1)},morpheus.RowDendrogram=function(controller,tree,positions,project){morpheus.AbstractDendrogram.call(this,controller,tree,positions,project,morpheus.AbstractDendrogram.Type.ROW)},morpheus.RowDendrogram.prototype={drawNode:function(context,node){var radius=this.getNodeRadius(node),pix=this.toPix(node);context.beginPath(),context.arc(pix[0],pix[1],radius,2*Math.PI,!1),context.fill()},isDragHotSpot:function(p){return Math.abs(this.scale(this.cutHeight)-p.x)<=2},preDraw:function(context,clip){context.setLineDash&&context.setLineDash([5]),context.strokeStyle="black";var nx=this.scale(this.cutHeight);context.beginPath(),context.moveTo(nx,clip.y),context.lineTo(nx,this.getUnscaledHeight()),context.stroke(),context.setLineDash&&context.setLineDash([])},getPreferredSize:function(){return{width:100,height:Math.ceil(this.positions.getPosition(this.positions.getLength()-1)+this.positions.getItemSize(this.positions.getLength()-1))}},paintMouseOver:function(clip,context){-1!==this.project.getHoverRowIndex()&&(morpheus.CanvasUtil.resetTransform(context),context.translate(0,-clip.y),this.drawRowBorder(context,this.positions,this.project.getHoverRowIndex(),this.getUnscaledWidth()))},drawRowBorder:function(context,positions,index,gridSize){var size=positions.getItemSize(index),pix=positions.getPosition(index);context.beginPath(),context.moveTo(0,pix+size),context.lineTo(gridSize,pix+size),context.stroke(),context.beginPath(),context.moveTo(0,pix),context.lineTo(gridSize,pix),context.stroke()},createScale:function(){return d3.scale.linear().domain([0,this.tree.maxHeight]).range([this.getUnscaledWidth(),0])},getMaxIndex:function(clip){return morpheus.Positions.getBottom(clip,this.positions)},getMinIndex:function(clip){return morpheus.Positions.getTop(clip,this.positions)},toPix:function(node){var min=this.positions.getPosition(node.minIndex)+this.positions.getItemSize(node.minIndex)/2,max=this.positions.getPosition(node.maxIndex)+this.positions.getItemSize(node.maxIndex)/2;return[this.scale(node.height),(min+max)/2]},drawPathFromNodeToParent:function(context,node){var pix=this.toPix(node),parentPix=this.toPix(node.parent);context.beginPath(),context.moveTo(pix[0],pix[1]),context.lineTo(parentPix[0],pix[1]),context.lineTo(parentPix[0],parentPix[1]),context.stroke()},drawNodePath:function(context,node,minIndex,maxIndex){var x,y,children=node.children,left=children[0],right=children[1],ry=this.toPix(right)[1],rx=this.scale(right.height),ly=this.toPix(left)[1],lx=this.scale(left.height),nx=this.scale(node.height);if(this.drawLeafNodes)x=[rx,nx,nx,lx],y=[ry,ry,ly,ly];else{var leftIsLeaf=void 0!==left.children,rightIsLeaf=void 0!==right.children;leftIsLeaf&&(lx=nx+4),rightIsLeaf&&(rx=nx+4),x=[rx,nx,nx,lx],y=[ry,ry,ly,ly]}context.beginPath(),context.moveTo(x[0],y[0]);for(var i=1,length=x.length;length>i;i++)context.lineTo(x[i],y[i]);context.stroke()}},morpheus.Util.extend(morpheus.RowDendrogram,morpheus.AbstractDendrogram),morpheus.ScentedSearch=function(model,positions,isVertical,scrollbar,controller){morpheus.AbstractCanvas.call(this,!1),this.model=model,this.positions=positions,this.isVertical=isVertical,this.scrollbar=scrollbar,this.controller=controller,this.searchIndices=[],scrollbar.decorator=this;var _this=this,mouseMove=function(e){var index=_this.getIndex(e);_this.mouseMovedIndex=index,document.body.style.cursor=0>index?"default":"pointer",scrollbar.canvas.style.cursor=0>index?"default":"pointer";var tipOptions={event:e,heatMapLens:index>=0};isVertical?controller.setToolTip(index>=0?_this.searchIndices[index]:-1,-1,tipOptions):controller.setToolTip(-1,index>=0?_this.searchIndices[index]:-1,tipOptions)},mouseExit=function(e){document.body.style.cursor="default",scrollbar.canvas.style.cursor="default",controller.setToolTip(-1,-1,{event:e})};$(scrollbar.canvas).on("mousemove",mouseMove).on("mouseout",mouseExit)},morpheus.ScentedSearch.LINE_HEIGHT=3.5,morpheus.ScentedSearch.prototype={mouseMovedIndex:-1,getIndex:function(event){var pix=morpheus.CanvasUtil.getMousePos(event.target,event),val=pix[this.isVertical?"y":"x"];return this.getIndexForPix(val)},getIndexForPix:function(pix){var indices=this.searchIndices;if(null==indices)return-1;var tolerance=morpheus.ScentedSearch.LINE_HEIGHT;if(this.mouseMovedIndex>0){var midVal=this.positions.getPosition(indices[this.mouseMovedIndex])*scale;if(Math.abs(midVal-pix)<=tolerance)return this.mouseMovedIndex}for(var low=0,scale=this.scale,high=indices.length-1;high>=low;){var mid=low+high>>1,midVal=this.positions.getPosition(indices[mid])*scale,cmp=0;if(Math.abs(midVal-pix)<=tolerance?cmp=0:pix>midVal?cmp=-1:midVal>pix&&(cmp=1),0>cmp)low=mid+1;else{if(!(cmp>0))return mid;high=mid-1}}return-1},tap:function(position){var val=position[this.isVertical?"y":"x"],index=this.getIndexForPix(val);return this.scrollbar.canvas.style.cursor=0>index?"default":"pointer",index>=0?(this.isVertical?this.controller.scrollTop(this.positions.getPosition(this.searchIndices[index])):this.controller.scrollLeft(this.positions.getPosition(this.searchIndices[index])),!0):!1},update:function(){this.searchIndices=this.model.getViewIndices().values().sort(function(a,b){return b>a?-1:1})},draw:function(clip,context){var width=this.scrollbar.getUnscaledWidth(),height=this.scrollbar.getUnscaledHeight(),availableLength=(this.isVertical?height:width)-morpheus.ScentedSearch.LINE_HEIGHT;this.scale=availableLength/(this.positions.getPosition(this.positions.getLength()-1)+this.positions.getItemSize(this.positions.getLength()-1)),context.strokeStyle="rgb(106,137,177)",context.fillStyle="rgb(182,213,253)",context.lineWidth=1,this.drawIndices(context,this.searchIndices),this.drawHoverMatchingValues(context)},drawHoverMatchingValues:function(context){var heatmap=this.controller;if(context.fillStyle="black",heatmap.mousePositionOptions&&null!=heatmap.mousePositionOptions.name){var isColumns=!this.isVertical,track=heatmap.getTrack(heatmap.mousePositionOptions.name,isColumns);if(null==track)return;if(track.settings.highlightMatchingValues){var hoverIndex=isColumns?heatmap.getProject().getHoverColumnIndex():heatmap.getProject().getHoverRowIndex();if(-1===hoverIndex)return;var vector=track.getVector(),value=vector.getValue(hoverIndex),valueToModelIndices=track.getFullVector().getProperties().get(morpheus.VectorKeys.VALUE_TO_INDICES);if(!valueToModelIndices){var fullVector=track.getFullVector();valueToModelIndices=morpheus.VectorUtil.createValueToIndicesMap(fullVector),fullVector.getProperties().set(morpheus.VectorKeys.VALUE_TO_INDICES,valueToModelIndices)}var modelIndices=valueToModelIndices.get(value);if(null==modelIndices)return void console.log("valueToModelIndices error");for(var scale=this.scale,lineLength=this.isVertical?this.scrollbar.getUnscaledWidth():this.scrollbar.getUnscaledHeight(),isVertical=this.isVertical,positions=this.positions,project=heatmap.getProject(),i=0,length=modelIndices.length;length>i;i++){var modelIndex=modelIndices[i],index=isVertical?project.convertModelRowIndexToView(modelIndex):project.convertModelColumnIndexToView(modelIndex);if(-1!==index){var pix=positions.getPosition(index)*scale;isVertical?context.fillRect(0,pix,lineLength,morpheus.ScentedSearch.LINE_HEIGHT):context.fillRect(pix,0,morpheus.ScentedSearch.LINE_HEIGHT,lineLength)}}}}},drawIndices:function(context,highlightedIndices){for(var scale=this.scale,lineLength=this.isVertical?this.scrollbar.getUnscaledWidth():this.scrollbar.getUnscaledHeight(),isVertical=this.isVertical,positions=this.positions,i=0,length=highlightedIndices.length;length>i;i++){var index=highlightedIndices[i],pix=positions.getPosition(index)*scale;isVertical?(context.beginPath(),context.rect(0,pix,lineLength,morpheus.ScentedSearch.LINE_HEIGHT),context.fill(),context.stroke()):(context.beginPath(),context.rect(pix,0,morpheus.ScentedSearch.LINE_HEIGHT,lineLength),context.fill(),context.stroke())}}},morpheus.Util.extend(morpheus.ScentedSearch,morpheus.AbstractCanvas),morpheus.ScrollBar=function(isVertical){morpheus.AbstractCanvas.call(this),this.isVertical=isVertical,$(this.canvas).css("border","1px solid #d8d8d8"),isVertical?this.setBounds({width:12}):this.setBounds({height:12}),this.field=this.isVertical?"y":"x";var that=this,mouseMove=function(event){if(!morpheus.CanvasUtil.dragging){var position=morpheus.CanvasUtil.getMousePos(event.target,event,!0),mouseOver=position[that.field]>=that.thumbPos&&position[that.field]<=that.thumbPos+that.thumbExtent;that.thumbMouseOver!==mouseOver&&(that.thumbMouseOver=mouseOver,that.repaint())}},mouseExit=function(e){!morpheus.CanvasUtil.dragging&&that.thumbMouseOver&&(that.thumbMouseOver=!1,that.repaint())};$(this.canvas).on("mousemove",mouseMove).on("mouseout",mouseExit).on("mouseenter",mouseMove),this.hammer=morpheus.Util.hammer(this.canvas,[this.isVertical?"panv":"panh","tap"]).on("panstart",function(event){var position=morpheus.CanvasUtil.getMousePos(event.target,event,!0);position[that.field]>=that.thumbPos&&position[that.field]<=that.thumbPos+that.thumbExtent?(that.draggingThumb=!0,that.dragStartThumbPos=that.thumbPos):that.draggingThumb=!1}).on("panend",function(event){that.draggingThumb=!1}).on("panmove",function(event){if(that.draggingThumb){var thumbPosPix=(morpheus.CanvasUtil.getMousePos(event.target,event),that.dragStartThumbPos+(that.isVertical?event.deltaY:event.deltaX)),f=thumbPosPix/(that.visibleExtent-that.thumbExtent),value=f*that.maxValue;that.setValue(value,!0),event.preventDefault(),event.srcEvent.stopPropagation(),event.srcEvent.stopImmediatePropagation()}}).on("tap doubletap",function(event){if(!that.draggingThumb){var position=morpheus.CanvasUtil.getMousePos(event.target,event);if(!that.decorator.tap(position)){var thumbExtentToValue=that.thumbExtent/that.totalExtent*that.totalExtent;that.scrollToTop=position[that.field]'];map.forEach(function(val,key){html.push("'),html.push(key),html.push("")}),html.push(""),formBuilder.append({name:"selected_value",type:"custom",value:html.join("")});var shapeField=new morpheus.ShapeField;formBuilder.append({col:"col-xs-2",name:"selected_shape",type:"custom",value:'
    '}),shapeField.$el.appendTo(formBuilder.find("shape"));var $valuePicker=formBuilder.$form.find("[name=valuePicker]"),selectedVal=$valuePicker.val(),_this=this;shapeField.setShapeValue(map.get(selectedVal)),shapeField.on("change",function(e){map.set(selectedVal,e.shape),_this.trigger("change",{value:selectedVal,shape:e.shape})}),$valuePicker.selectpicker().change(function(){selectedVal=$valuePicker.val(),shapeField.setShapeValue(map.get(selectedVal))}),this.$div=formBuilder.$form},morpheus.ShapeChooser.prototype={},morpheus.Util.extend(morpheus.ShapeChooser,morpheus.Events),morpheus.ShapeField=function(shapes){shapes=shapes||morpheus.VectorShapeModel.SHAPES;var _this=this,html=[],size2=8,x=4,y=4;html.push('
    '),html.push(''),html.push('
    ");var $el=$(html.join("")),$header=$el.find("[name=selection]");$el.on("click","li > a",function(e){var shape=$(this).attr("value");setShapeValue(shape),_this.trigger("change",{shape:shape})});var setShapeValue=function(val){if($header.attr("value",val),"none"===val)$header.html("(None)");else{var context=new C2S(2*size2,2*size2);context.translate(4,4),morpheus.CanvasUtil.drawShape(context,val,x,y,size2),$header.html(context.getSerializedSvg())}};this.setShapeValue=setShapeValue,this.$el=$el},morpheus.ShapeField.prototype={},morpheus.Util.extend(morpheus.ShapeField,morpheus.Events),morpheus.SortByValuesIndicator=function(project,isVertical,positions){morpheus.AbstractCanvas.call(this,!0),this.project=project,this.isVertical=isVertical,this.positions=positions,this.lastPosition={start:-1,end:-1}},morpheus.SortByValuesIndicator.prototype={prePaint:function(clip,context){var positions=this.positions,start=0,end=positions.getLength();this.isVertical?(start=morpheus.Positions.getTop(clip,positions),end=morpheus.Positions.getBottom(clip,positions)):(start=morpheus.Positions.getLeft(clip,positions),end=morpheus.Positions.getRight(clip,positions)),(this.invalid||start!==this.lastPosition.start||end!==this.lastPosition.end)&&(this.lastPosition.start=start,this.lastPosition.end=end,this.invalid=!0)},draw:function(clip,context){var project=this.project,isVertical=this.isVertical,positions=this.positions,sortKeys=isVertical?project.getColumnSortKeys():project.getRowSortKeys();context.translate(-clip.x,-clip.y),context.fillStyle="black",context.textBaseline="top",context.textAlign="left",context.font="8px "+morpheus.CanvasUtil.FONT_NAME;var start=0,end=positions.getLength();isVertical?(start=morpheus.Positions.getTop(clip,positions),end=morpheus.Positions.getBottom(clip,positions)):(start=morpheus.Positions.getLeft(clip,positions), end=morpheus.Positions.getRight(clip,positions));for(var arrowWidth=3,arrowHeight=4,i=0;i=start&&end>view){context.save();var pix=positions.getPosition(view),size=positions.getItemSize(view);isVertical?context.translate(2,pix+size/2):context.translate(pix+size/2,0),context.beginPath(),key.getSortOrder()===morpheus.SortKey.SortOrder.ASCENDING?(context.moveTo(0,0),context.lineTo(arrowWidth,arrowHeight),context.lineTo(-arrowWidth,arrowHeight)):key.getSortOrder()===morpheus.SortKey.SortOrder.DESCENDING?(context.moveTo(0,arrowHeight),context.lineTo(arrowWidth,0),context.lineTo(-arrowWidth,0)):(context.moveTo(0,0),context.lineTo(arrowWidth,arrowHeight/2),context.lineTo(0,arrowHeight),context.lineTo(-arrowWidth,arrowHeight/2)),context.fill(),context.restore()}}}}},morpheus.Util.extend(morpheus.SortByValuesIndicator,morpheus.AbstractCanvas),morpheus.SortDialog=function(project){function toggle(isColumns){_this.isColumns=isColumns;var $element=_this.build(project,isColumns);$div.empty().html($element),$div.on("click","[name=delete]",function(e){var $this=$(this);e.preventDefault(),$this.closest("div.row").remove()}),$div.on("click","[name=add]",function(e){var $this=$(this),level=[],$sibling=$this.closest("div.row");_this.createLevel(level,new morpheus.SortKey("",morpheus.SortKey.SortOrder.ASCENDING),_this.fields),$sibling.after($(level.join(""))),e.preventDefault()})}var _this=this,$chooserDiv=$('
    '),$div=$('
    '),html=[];html.push('
    '),html.push('
    '),html.push('
    '),html.push('
    '),html.push('
    '),html.push('
    '),html.push("
    "),html.push("
    "),html.push("
    "),$chooserDiv.html(html.join("")),$chooserDiv.on("change","[name=rowsOrColumns]",function(e){var $this=$(this);toggle("columns"===$this.val())}),toggle(!1);var $outer=$("
    ");$chooserDiv.appendTo($outer),$div.appendTo($outer),morpheus.FormBuilder.showOkCancel({title:"Sort",content:$outer,okCallback:function(){var $forms=$div.find("form"),sortBy=$forms.find("[name=sortBy]").map(function(){return $(this).val()}),sortOrder=$forms.find("[name=sortOrder]:checked").map(function(){return $(this).val()}),groupBy=$div.find("[name=groupBy]").val(),newSortKeys=[],modelIndices=_this.isColumns?project.getRowSelectionModel().toModelIndices():project.getColumnSelectionModel().toModelIndices(),existingSortKeys=_this.isColumns?project.getColumnSortKeys():project.getRowSortKeys(),keysToKeep=_.filter(existingSortKeys,function(key){return key instanceof morpheus.MatchesOnTopSortKey||key instanceof morpheus.SpecifiedModelSortOrder&&"dendrogram"===key.name});keysToKeep.length>0&&_.each(keysToKeep,function(key){newSortKeys.push(key)});for(var newSortKeyFields=new morpheus.Set,i=0;i'),html.push('
    '),html.push('
    '),html.push('
    ');var groupByKeys=(isColumns?project.getGroupColumns():project.getGroupRows()).map(function(key){return key.field});return html.push('"),html.push(""),html.push("
    "),$(html.join(""))},createLevel0:function(html){html.push('
    '),html.push('
    '),html.push('
    '),html.push('Add sort level'),html.push("
    "),html.push("
    "),html.push("
    ")},createLevel:function(html,key,fields){html.push('
    '),html.push('
    '),html.push('
    '),html.push('
    '),html.push('"),html.push("
    "),html.push('
    '),html.push('
    "),html.push('
    "),html.push("
    "),html.push('
    '),html.push('Delete'),html.push("
    "),html.push('
    '),html.push('Add sort level'),html.push("
    "),html.push("
    "),html.push("
    ")}},morpheus.Spacer=function(width,height){this.width=width,this.height=height},morpheus.Spacer.prototype={prefWidth:void 0,prefHeight:void 0,visible:!0,dispose:function(){},getPrefWidth:function(){return this.prefWidth},draw:function(clip){},getPreferredSize:function(){return{width:this.width,height:this.height}},setBounds:function(){},getPrefHeight:function(){return this.prefHeight},setPrefWidth:function(prefWidth){this.prefWidth=prefWidth},setPrefHeight:function(prefHeight){this.prefHeight=prefHeight},isVisible:function(){return this.visible},setVisible:function(visible){this.visible=visible},getWidth:function(){return this.width},getHeight:function(){return this.height}},morpheus.SteppedColorSupplier=function(){morpheus.AbstractColorSupplier.call(this),this.hiddenValue=0,this.hiddenValues=new morpheus.Set,this.stepped=!0},morpheus.SteppedColorSupplier.linearScale=function(value,input0,input1,pix0,pix1){return(value-input0)/(input1-input0)*(pix1-pix0)+pix0},morpheus.SteppedColorSupplier.prototype={createInstance:function(){return new morpheus.SteppedColorSupplier},isStepped:function(){return!0},getHiddenValues:function(){return this.hiddenValues},getIndexForFraction:function(f){var fractions=this.fractions;if(f<=fractions[0])return 0;if(f>=fractions[fractions.length-1])return fractions.length-1;for(var i=0;i=left&&right>f)return i}return fractions.length-1},getColor:function(row,column,value){if(this.hiddenValues.has(value)&&(value=this.hiddenValue),isNaN(value))return this.missingColor;var min=this.min,max=this.max,colors=this.colors;if(min>=value)return colors[0];if(value>=max)return colors[colors.length-1];var fraction=morpheus.SteppedColorSupplier.linearScale(value,min,max,0,100)/100;return colors[this.getIndexForFraction(fraction)]}},morpheus.Util.extend(morpheus.SteppedColorSupplier,morpheus.AbstractColorSupplier),morpheus.TabManager=function(options){function rename($a){var builder=new morpheus.FormBuilder;builder.append({name:"name",type:"text",value:$.trim($a.contents().first().text())}),morpheus.FormBuilder.showOkCancel({title:"Rename Tab",content:builder.$form,okCallback:function(){var name=$.trim(builder.getValue("name"));""!==name&&(_this.activeTabObject.setName(name),$a.contents().first().replaceWith(name+" "))}})}this.options=$.extend({},{autohideTabBar:!1},options);var _this=this;this.activeTabObject=null,this.activeTabId=null,this.idToTabObject=new morpheus.Map,this.$nav=$('
      '),this.$nav.on("click","li > a",function(e){var tabId=$(this).attr("href");e.preventDefault(),_this.activeTabId!==tabId&&$(this).tab("show")}),this.$nav.on("dblclick","li > a",function(e){e.preventDefault(),$(this).data("morpheus-rename")&&rename($(this))}),this.$nav.on("contextmenu.morpheus","li > a",function(e){e.preventDefault(),e.stopPropagation(),e.stopImmediatePropagation();var $a=$(this);return $a.data("morpheus-rename")&&morpheus.Popup.showPopup([{name:"Rename"}],{x:e.pageX,y:e.pageY},e.target,function(event,item){rename($a)}),!1}),this.$nav.on("click","button",function(e){e.preventDefault();var target=$(this).attr("data-target");_this.remove(target)}),this.$tabContent=$('
      '),this.$nav.on("shown.bs.tab",'a[data-toggle="tab"]',function(e){if(!_this.adding){var previous=_this.activeTabObject;_this.activeTabId=$(e.target).attr("href"),_this.activeTabObject=_this.idToTabObject.get(_this.activeTabId),_this.trigger("change",{tab:_this.activeTabObject,previous:previous})}})},morpheus.TabManager.prototype={setTabText:function(id,text){this.$nav.find("a").filter("[href="+id+"]").contents().first().replaceWith(text+" "),this.idToTabObject.get(id).setName(name)},addTask:function(task){var $a=this.$nav.find("a[href="+task.tabId+"]");if(0===$a.length)throw new Error(task.tabId+" not found.");var $i=$a.find("i"),tasks=$i.data("tasks");tasks||(tasks=[]),task.id=_.uniqueId("task"),tasks.push(task),$i.data("tasks",tasks),$a.removeClass("animated flash").addClass("animated flash").one("webkitAnimationEnd mozAnimationEnd MSAnimationEnd oanimationend animationend",function(){$(this).removeClass("animated flash")}),$i.addClass("fa fa-spinner fa-spin")},removeTask:function(task){var $a=this.$nav.find("a[href="+task.tabId+"]"),$i=$a.find("i"),tasks=$i.data("tasks");tasks||(tasks=[]);for(var index=-1,i=0;i'),li.push(''),li.push(options.title),li.push(' '),options.closeable&&li.push(' '),li.push("");var $link=$(li.join(""));$link.appendTo(this.$nav);var $panel=$('
      ');return options.$el.appendTo($panel),$panel.appendTo(this.$tabContent),options.enabled===!1&&($link.addClass("disabled"),$link.find("a").addClass("btn disabled")),options.focus&&(this.$nav.find('a[data-toggle="tab"]:last').tab("show"),this.activeTabId="#"+id,this.activeTabObject=options.object,$panel.focus()),this.adding=!1,this.options.autohideTabBar&&this.$nav.css("display",this.idToTabObject.size()>1?"":"none"),{$panel:$panel,id:"#"+id}},remove:function(target){void 0===target&&(target=this.activeTabId),this.idToTabObject.remove(target),this.$nav.find("[href="+target+"]").parent().remove(),this.$tabContent.find(target).remove();var $a=this.$nav.find('a[data-toggle="tab"]:last');0===$a.length&&this.options.landingPage&&this.options.landingPage.show(),$a.tab("show"),this.options.autohideTabBar&&this.$nav.css("display",this.idToTabObject.size()>1?"":"none")},setActiveTab:function(id){id===this.activeTabId&&this.trigger("change",{tab:this.activeTabObject,previous:null});var $a=this.$nav.find("[href="+id+"]");$a.parent().removeClass("disabled"),$a.removeClass("btn disabled"),$a.tab("show")},setTabTitle:function(id,title){this.$nav.find("a").filter("[href="+id+"]").attr("title",title)},setTabEnabled:function(id,enabled){var $a=this.$nav.find("a").filter("[href="+id+"]");enabled?($a.parent().removeClass("disabled"),$a.removeClass("btn disabled")):($a.parent().addClass("disabled"),$a.addClass("btn disabled"))}},morpheus.Util.extend(morpheus.TabManager,morpheus.Events),morpheus.Table=function(options){options=morpheus.Table.createOptions(options),this.options=options,options.width||(options.width=options.$el.attr("class"));var _this=this,height=options.height,$gridDiv=$('
      ');this.$gridDiv=$gridDiv,$gridDiv.appendTo(options.$el);var columns=options.columns;this.columns=columns;var visibleColumns=columns.filter(function(c){return c.visible}),grid=new morpheus.Grid({gridOptions:{forceFitColumns:!0,select:options.select,rowHeight:options.rowHeight,autoEdit:!1,editable:!1,autoHeight:"auto"===options.height,enableTextSelectionOnCells:!0},$el:$gridDiv,items:options.items,columns:visibleColumns});if(this.grid=grid,options.search){var tableSearch=new morpheus.TableSearchUI;tableSearch.$el.prependTo(options.$el),tableSearch.setTable(this),this.tableSearch=tableSearch}if(visibleColumns.length!==this.columns.length){var select=[];select.push('");var $select=$(select.join("")),$div=$('
      ');$select.appendTo($div),$div.prependTo(options.$el),$select.selectpicker({iconBase:"fa",tickIcon:"fa-check",style:"btn-default btn-sm"}),$select.on("change",function(){var selectedItems=$select.val(),selectedItemsSet=new morpheus.Set;selectedItems.forEach(function(item){selectedItemsSet.add(parseInt(item))});var visibleColumns=[];_this.columns.forEach(function(c,i){selectedItemsSet.has(i)&&visibleColumns.push(c)}),grid.setColumns(visibleColumns),_this.resize(),_this.redraw()})}var collapsed=!1,lastWidth=-1,resize=function(){if(_this.options.responsive){var gridWidth=options.$el.width();gridWidth!==lastWidth&&(lastWidth=gridWidth,$gridDiv.css("width",gridWidth+"px"),!collapsed&&gridWidth1?(collapsed=!0,$gridDiv.addClass("slick-stacked"),_this.grid.grid.getOptions().rowHeight=options.rowHeight*columns.length,_this.grid.grid.setColumns([{id:0,tooltip:function(item,value){for(var html=[],i=0;i")},collapsed:!0,getter:function(item){return item},formatter:function(row,cell,value,columnDef,dataContext){var html=[];html.push('
      '),options.rowHeader&&html.push(options.rowHeader(dataContext));for(var i=0;i'):html.push("
      ");var c=columns[i],s=c.renderer(dataContext,c.getter(dataContext));html.push(s),html.push("
      ")}return html.push("
      "),html.join("")},sortable:!1,name:""}]),$gridDiv.find(".slick-header").hide(),_this.grid.grid.resizeCanvas(),_this.grid.grid.invalidate()):collapsed&&gridWidth>=options.collapseBreakpoint?($gridDiv.removeClass("slick-stacked"),collapsed=!1,options.showHeader&&$gridDiv.find(".slick-header").show(),_this.grid.grid.getOptions().rowHeight=options.rowHeight,_this.grid.grid.setColumns(columns),_this.grid.grid.resizeCanvas(),options.select&&_this.grid.grid.setSelectedRows(_this.grid.grid.getSelectedRows()),_this.grid.grid.invalidate()):(_this.grid.grid.resizeCanvas(),_this.grid.grid.invalidate()))}};options.showHeader||$gridDiv.find(".slick-header").hide(),options.responsive&&($(window).on("resize orientationchange",resize),$gridDiv.on("remove",function(){$(window).off("resize",resize)}),resize()),this.resize=resize,options.columns.length>1&&null!=options.items&&options.items.length>0&&this.setItems(options.items)},morpheus.Table.defaultRenderer=function(item,value){if(_.isNumber(value))return morpheus.Util.nf(value);if(morpheus.Util.isArray(value)){for(var s=[],i=0,length=value.length;length>i;i++){i>0&&s.push(", ");value[i];s.push(value[i])}return s.join("")}return""+value},morpheus.Table.prototype={setHeight:function(height){if(this.options.height=height,"auto"===height?(this.$gridDiv.css("height",""),this.grid.grid.getOptions().autoHeight=!0,this.grid.grid.setOptions(this.grid.grid.getOptions())):this.$gridDiv.css("height",height),this.grid.grid.resizeCanvas(),"auto"===height){var height=this.getItems().length*this.options.rowHeight+this.options.rowHeight;this.$gridDiv.find(".slick-viewport").css("height",height+"px")}this.grid.grid.invalidate()},setSearchVisible:function(visible){this.tableSearch&&(visible?this.tableSearch.$el.show():this.tableSearch.$el.hide())},autocomplete:function(tokens,response){var matches=[],token=null!=tokens&&tokens.length>0?tokens[tokens.selectionStartIndex]:"";token=$.trim(token);var columns=this.columns.filter(function(c){return c.searchable}),ncolumns=columns.length,showField=ncolumns>1;if(""===token){if(1>=ncolumns)return response(matches);for(var i=0;ncolumns>i;i++){var field=columns[i].name;matches.push({value:field+":",label:''+field+":",show:!0})}return matches.sort(function(a,b){return a.value===b.value?0:a.value0){if(92!==token.charCodeAt(semi-1)){var possibleField=$.trim(token.substring(0,semi));possibleField.length>0&&'"'===possibleField[0]&&'"'===possibleField[token.length-1]&&(possibleField=possibleField.substring(1,possibleField.length-1));for(var columnNameToColumn=new morpheus.Map,columnNames=columns.map(function(c){return c.name}),i=0;i1)for(var regex=new RegExp("^"+morpheus.Util.escapeRegex(token),"i"),j=0;ncolumns>j;j++){var field=columns[j].name;regex.test(field)&&matches.push({value:field+":",label:''+field+":",show:!0})}for(var set=new morpheus.Set,regex=new RegExp("^"+morpheus.Util.escapeRegex(token),"i"),items=this.getItems(),maxSize=matches.length+10,i=0,nitems=items.length;nitems>i;i++)for(var item=items[i],j=0;ncolumns>j;j++){var field=columns[j].name,value=columns[j].getter(item);if(morpheus.Util.isArray(value))for(var nvalues=value.length,k=0;nvalues>k;k++){var val=value[k];if(regex.test(val)&&!set.has(val)&&(set.add(val),matches.push({value:showField?field+":"+val:val,label:showField?''+field+':'+val+"":''+val+""})),matches.length===maxSize)return response(matches)}else if(regex.test(value)&&!set.has(value)&&(set.add(value),matches.push({value:showField?field+":"+value:value,label:showField?''+field+':'+value+"":''+value+""}),matches.length===maxSize))return response(matches)}return response(matches)},searchWithPredicates:function(predicates){if(null==predicates||0===predicates.length)return void this.grid.setFilter(null);for(var columns=this.columns.filter(function(c){return c.searchable}),columnNameToColumn=new morpheus.Map,columnNames=columns.map(function(c){return c.name}),i=0;ii;i++){var predicate=predicates[i],filterColumnName=predicate.getField();if(null!=filterColumnName){var column=columnNameToColumn.get(filterColumnName);column&&(predicate.column=column,filteredPredicates.push(predicate))}else filteredPredicates.push(predicate)}predicates=filteredPredicates,npredicates=predicates.length,this.grid.setFilter(function(item){for(var p=0;npredicates>p;p++){var searchColumns,predicate=predicates[p];searchColumns=predicate.column?[predicate.column]:columns;for(var j=0,ncolumns=searchColumns.length;ncolumns>j;j++){var value=searchColumns[j].getter(item);if(morpheus.Util.isArray(value)){for(var nvalues=value.length,i=0;nvalues>i;i++)if(predicate.accept(value[i]))return!0}else{var predicate=predicates[p];if(predicate.accept(value))return!0}}}return!1})},search:function(text){if(""===text)this.grid.setFilter(null);else{var tokens=morpheus.Util.getAutocompleteTokens(text),columns=this.columns.filter(function(c){return c.searchable}),columnNames=columns.map(function(c){return c.name}),predicates=morpheus.Util.createSearchPredicates({tokens:tokens,fields:columnNames});this.searchWithPredicates(predicates)}},getSelectedRows:function(){return this.grid.getSelectedRows()},getSelectedItems:function(){return this.grid.getSelectedItems()},getSelectedItem:function(){return this.grid.getSelectedItem()},setSelectedRows:function(rows){this.grid.setSelectedRows(rows)},getItems:function(items){return this.grid.getItems()},getAllItemCount:function(){return this.grid.getAllItemCount()},getFilteredItemCount:function(){return this.grid.getFilteredItemCount()},setFilter:function(f){this.grid.setFilter(f)},setItems:function(items){this.grid.setItems(items),this.grid.redraw()},redraw:function(){this.grid.redraw()},on:function(evtStr,handler){this.grid.on(evtStr,handler)},off:function(evtStr,handler){this.grid.off(evtStr,handler)},trigger:function(evtStr){this.grid.trigger(evtStr)}},morpheus.Table.createOptions=function(options){options=$.extend(!0,{},{items:[],height:"564px",collapseBreakpoint:500,showHeader:!0,select:!0,rowHeader:null,responsive:!0,fixedWidth:"320px"},options),options.columns||(options.columns=[{name:""}]);var columns=[];return options.columns.forEach(function(c,i){var column=$.extend(!0,{},{id:i,tooltip:function(dataContext,value){return morpheus.Table.defaultRenderer(dataContext,value)},formatter:function(row,cell,value,columnDef,dataContext){return column.renderer(dataContext,value)},comparator:function(a,b){var aNaN=null==a||_.isNumber(a)&&isNaN(a),bNaN=null==b||_.isNumber(b)&&isNaN(b);return aNaN&&bNaN?0:aNaN?1:bNaN?-1:(a.toLowerCase&&(a=a.toLowerCase()),b.toLowerCase&&(b=b.toLowerCase()),a===b?0:b>a?-1:1)},sortable:!0,searchable:!0,width:null,name:c.name,renderer:morpheus.Table.defaultRenderer},c);void 0===column.visible&&(column.visible=!0),column.getter||(column.getter=null==column.field?function(item){return item}:function(item){return item[c.field]}),options.rowHeader&&0===i&&(column.formatter=function(row,cell,value,columnDef,dataContext){return options.rowHeader(dataContext)+column.renderer(dataContext,value)}),columns.push(column)}),options.columns=columns,1===options.columns.length?options.tableClass="slick-table-compact":options.tableClass="slick-striped-table",options.rowHeight||(options.rowHeight="slick-table-compact"===options.tableClass?18:20),options},morpheus.TableSearchUI=function(){var _this=this,html=[];html.push('
      '),html.push('
      '),html.push('
      '),html.push(''),html.push('
      '),html.push("
      "),html.push("
      "),html.push("
      ");var $el=$(html.join(""));this.$el=$el,$el.find("form").on("submit",function(e){e.preventDefault()});var $search=$el.find("[name=search]"),$searchResults=$el.find("[name=searchResults]");this.$searchResults=$searchResults,$search.on("keyup",_.debounce(function(){_this.table.search($.trim($(this).val()))},100)),morpheus.Util.autosuggest({$el:$search,suggestWhenEmpty:!0,filter:function(tokens,response){_this.table.autocomplete(tokens,response)},select:function(){_this.table.search($.trim($search.val()))}})},morpheus.TableSearchUI.prototype={updateSearchLabel:function(){var filteredCount=this.table.getFilteredItemCount(),text="";filteredCount!==this.table.getAllItemCount()&&(text+=morpheus.Util.intFormat(filteredCount)+" match"+(1!==filteredCount?"es":"")),this.$searchResults.html(text)},setTable:function(table){this.table=table;var _this=this;table.options.responsive||this.$el.css("width",table.options.fixedWidth),table.on("filter",function(){_this.updateSearchLabel()})}},morpheus.TrackSelection=function(track,positions,selectionModel,isColumns,controller){function getPosition(event,useDelta){if(track.settings.squished){var total=positions.getPosition(positions.getLength()-1)+positions.getItemSize(positions.getLength()-1),squishFactor=total/(isColumns?track.getUnscaledWidth():track.getUnscaledHeight()),p=(morpheus.CanvasUtil.getClientXY(event,useDelta),morpheus.CanvasUtil.getMousePosWithScroll(event.target,event,0,0,useDelta));return p[coord]*=squishFactor,p}return morpheus.CanvasUtil.getMousePosWithScroll(event.target,event,controller.scrollLeft(),controller.scrollTop(),useDelta)}var canvas=track.canvas,startIndex=-1,coord=isColumns?"x":"y";this.hammer=morpheus.Util.hammer(canvas,["pan","tap","longpress"]).on("longpress",function(event){event.preventDefault(),event.srcEvent.stopImmediatePropagation(),event.srcEvent.stopPropagation(),controller.setSelectedTrack(track.name,isColumns),track.showPopup(event.srcEvent)}).on("panmove",function(event){var position=getPosition(event),endIndex=positions.getIndex(position[coord],!1),commandKey=morpheus.Util.IS_MAC?event.srcEvent.metaKey:event.srcEvent.ctrlKey,viewIndices=commandKey?selectionModel.getViewIndices():new morpheus.Set,_startIndex=startIndex;if(startIndex>endIndex){var tmp=endIndex;endIndex=_startIndex,_startIndex=tmp}for(var i=_startIndex;endIndex>=i;i++)viewIndices.add(i);if(selectionModel.setViewIndices(viewIndices,!0),isColumns){var scrollLeft=controller.scrollLeft(),scrollRight=scrollLeft+controller.heatmap.getUnscaledWidth();position.x>scrollRight?controller.scrollLeft(scrollLeft+8):position.xscrollBottom?controller.scrollTop(scrollTop+8):position.y1){if(isColumns&&!controller.options.columnsSortable||!isColumns&&!controller.options.rowsSortable)return;controller.sortBasedOnSelection(null,isColumns,event.srcEvent.shiftKey)}else{controller.setSelectedTrack(track.name,isColumns);var commandKey=morpheus.Util.IS_MAC?event.srcEvent.metaKey:event.srcEvent.ctrlKey;if(morpheus.Util.IS_MAC&&event.srcEvent.ctrlKey)return;var viewIndices;if(commandKey)viewIndices=selectionModel.getViewIndices(),viewIndices.has(index)?viewIndices.remove(index):viewIndices.add(index);else if(event.srcEvent.shiftKey){viewIndices=selectionModel.getViewIndices();var min=Number.MAX_VALUE,max=-Number.MAX_VALUE;for(var viewIndex in viewIndices)min=Math.min(viewIndex,min),max=Math.max(viewIndex,max);if(index>=max)for(var i=max;index>=i;i++)viewIndices.add(i);else for(var i=Math.min(index,min),max=Math.max(index,min);max>=i;i++)viewIndices.add(i)}else viewIndices=new morpheus.Set,viewIndices.add(index);selectionModel.setViewIndices(viewIndices,!0)}})},morpheus.TrackSelection.prototype={dispose:function(){this.hammer.destroy()}},morpheus.VectorTrack=function(project,name,positions,isColumns,heatmap){morpheus.AbstractCanvas.call(this,!0),this.preferredSize={width:0,height:0},this.project=project,this.positions=positions,this.isColumns=isColumns,this.name=name,this.visible=!0,this.heatmap=heatmap,this.id=_.uniqueId();var _this=this;this.updateSpanMapFunction=function(){_this.spanMap=morpheus.VectorUtil.createSpanMap(_this.getVector())},this.lastPosition={start:-1,end:-1},this.events="rowSortOrderChanged rowFilterChanged datasetChanged";var mouseMoved=function(event){var index=-1;if("mouseout"!==event.type){var position=morpheus.CanvasUtil.getMousePosWithScroll(event.target,event,heatmap.scrollLeft(),heatmap.scrollTop());if(_this.settings.squished){var total=positions.getPosition(positions.getLength()-1)+positions.getItemSize(positions.getLength()-1),squishFactor=total/(isColumns?_this.getUnscaledWidth():_this.getUnscaledHeight());position[isColumns?"x":"y"]*=squishFactor}index=isColumns?_this.positions.getIndex(position.x,!1):_this.positions.getIndex(position.y,!1)}isColumns?heatmap.setMousePosition(-1,index,{name:_this.name,event:event}):heatmap.setMousePosition(index,-1,{name:_this.name,event:event})};$(this.canvas).on("contextmenu.morpheus",function(e){return e.preventDefault(),e.stopPropagation(),e.stopImmediatePropagation(),heatmap.setSelectedTrack(_this.name,isColumns),_this.showPopup(e),!1}),this.settings={maxTextWidth:void 0,squished:!1,inlineTooltip:!1,tooltip:!0,discrete:!0,highlightMatchingValues:!1,discreteAutoDetermined:!1,colorBarSize:12,stackedBar:!1,renderMethod:{},selectionColor:"rgb(182,213,253)",colorByField:null,barColor:"#bdbdbd",barSize:40,arcSize:60,min:void 0,mid:void 0,max:void 0,minMaxReversed:!1},$(this.canvas).on("mousemove.morpheus mouseout.morpheus",mouseMoved)},morpheus.VectorTrack.RENDER={TEXT:0,COLOR:1,BAR:2,MOLECULE:3,TEXT_AND_COLOR:4,SHAPE:5,ARC:6,BOX_PLOT:7},morpheus.VectorTrack.vectorToString=function(vector){ -var formatter=function(v){return""+v},dataType=morpheus.VectorUtil.getDataType(vector);return"number"===dataType?formatter=morpheus.Util.nf:"[number]"===dataType?formatter=function(v){var s=[];if(null!=v)for(var i=0,arrayLength=v.length;arrayLength>i;i++)s.push(morpheus.Util.nf(v[i]));return s.join(", ")}:"[string]"===dataType&&(formatter=function(v){var s=[];if(null!=v)for(var i=0,arrayLength=v.length;arrayLength>i;i++)s.push(v[i]);return s.join(", ")}),formatter},morpheus.VectorTrack.prototype={settingFromConfig:function(conf){var settings=this.settings;if(_.isString(conf)){settings.renderMethod={};for(var tokens=conf.split(","),i=0,length=tokens.length;length>i;i++){var method=$.trim(tokens[i]);method=method.toUpperCase();var mapped=morpheus.VectorTrack.RENDER[method];void 0!==mapped?settings.renderMethod[mapped]=!0:"DISCRETE"===method?(settings.discrete=!0,settings.discreteAutoDetermined=!0):"CONTINUOUS"===method?(settings.discrete=!1,settings.discreteAutoDetermined=!0):"HIGHLIGHT"===method?settings.highlightMatchingValues=!0:"STACKED_BAR"===method?(settings.stackedBar=!0,settings.renderMethod[morpheus.VectorTrack.RENDER.BAR]=!0):"BOX_PLOT"===method?settings.renderMethod[morpheus.VectorTrack.RENDER.BOX_PLOT]=!0:console.log(method+" not found.")}}else _.isNumber(conf)?(settings.renderMethod={},settings.renderMethod[conf]=!0):_.isObject(conf)&&(conf.maxTextWidth=void 0,this.settings=$.extend({},this.settings,conf));this._update()},isDiscrete:function(){return this.settings.discrete},setShowTooltip:function(value){this.settings.tooltip=value},isShowTooltip:function(){return this.settings.tooltip},isRenderAs:function(value){return this.settings.renderMethod[value]},dispose:function(){morpheus.AbstractCanvas.prototype.dispose.call(this),$(this.canvas).off("contextmenu.morpheus mousemove.morpheus mouseout.morpheus"),this.project.off(this.events,this.updateSpanMapFunction)},getName:function(){return this.name},getVector:function(name){name=null==name?this.name:name;var vector=this.isColumns?this.project.getSortedFilteredDataset().getColumnMetadata().getByName(name):this.project.getSortedFilteredDataset().getRowMetadata().getByName(name);return vector?vector:new morpheus.Vector(name,0)},getFullVector:function(){var vector=this.isColumns?this.project.getFullDataset().getColumnMetadata().getByName(this.name):this.project.getFullDataset().getRowMetadata().getByName(this.name);return vector?vector:new morpheus.Vector(this.name,0)},_updatePreferredSize:function(){var size=this._computePreferredSize();this.preferredSize.width=size.width,this.preferredSize.height=size.height},_computePreferredSize:function(forPrint){var width=0,height=0;if(this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)||this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR))if(this.positions.getSize()>=6){var context=this.canvas.getContext("2d"),textWidth=morpheus.CanvasUtil.getVectorStringWidth(context,this.getVector(),this.positions,forPrint?-1:this.isColumns?120:100);forPrint||(textWidth=Math.min(textWidth,this.isColumns?100:500),this.settings.maxTextWidth=textWidth),width+=textWidth}else forPrint||(this.settings.maxTextWidth=0);this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)&&(width+=this.settings.barSize),this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)&&(width+=this.settings.colorBarSize),this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)&&(width+=this.settings.colorBarSize),this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)&&(width+=300),forPrint||this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)||(width=Math.min(300,width)),this.isRenderAs(morpheus.VectorTrack.RENDER.ARC)&&(width+=this.settings.arcSize),this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT)&&(width+=100);var nkeys=_.keys(this.settings.renderMethod).length;return nkeys>0&&(width+=2*(nkeys-1)),width=Math.max(0,width),this.isColumns?{width:height,height:width}:{width:width,height:height}},getPreferredSize:function(){return this.preferredSize},getPrintSize:function(){return this._computePreferredSize(!0)},_createDiscreteValueMap:function(){var values=morpheus.VectorUtil.getValues(this.getFullVector());values.sort(morpheus.SortKey.ASCENDING_COMPARATOR),this.discreteValueMap=new morpheus.Map;for(var i=0,length=values.length;length>i;i++)this.discreteValueMap.set(values[i],i+1);this.settings.min=0,this.settings.mid=0,this.settings.max=values.length},_setChartMinMax:function(){if(this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT))if(this.settings.stackedBar||!this.settings.discrete||this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT)){if(null==this.settings.min||null==this.settings.max||null==this.settings.mid){var vector=this.getFullVector(),minMax=morpheus.VectorUtil.getMinMax(vector),min=minMax.min,max=minMax.max;if(this.settings.minMaxReversed){var tmp=max;max=min,min=tmp}null==this.settings.min&&(this.settings.min=Math.min(0,min)),null==this.settings.max&&(this.settings.max=Math.max(0,max)),null==this.settings.mid&&(this.settings.mid=this.settings.min<0?0:this.settings.min)}}else this.discreteValueMap||this._createDiscreteValueMap()},_update:function(){if(!this.settings.discreteAutoDetermined&&(this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BAR))&&((this.getFullVector().getProperties().has(morpheus.VectorKeys.FIELDS)||"number"===morpheus.VectorUtil.getDataType(this.getFullVector()))&&(this.settings.discrete=!1,this.settings.highlightMatchingValues=!1),this.settings.discreteAutoDetermined=!0),this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)&&this.project.off(this.events,this.updateSpanMapFunction),this._setChartMinMax(),this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)&&(this.project.on(this.events,this.updateSpanMapFunction),!this.moleculeCache)){this.moleculeCache={};var _this=this,valueToModelIndices=this.getFullVector().getProperties().get(morpheus.VectorKeys.VALUE_TO_INDICES);if(!valueToModelIndices){var fullVector=this.getFullVector();valueToModelIndices=morpheus.VectorUtil.createValueToIndicesMap(fullVector),fullVector.getProperties().set(morpheus.VectorKeys.VALUE_TO_INDICES,valueToModelIndices)}if(void 0!==_this.heatmap.options.structureUrlProvider)valueToModelIndices.forEach(function(indices,value){var url=_this.heatmap.options.structureUrlProvider(value),image=new Image;image.src=url,_this.moleculeCache[value]=image}),setTimeout(2e3,function(){_this.setInvalid(!0),_this.repaint()});else for(var values=valueToModelIndices.keys(),doRequest=function(smile){$.ajax({contentType:"text/plain",context:{smile:smile},data:{string:smile,representation:"sdf"},url:"http://cactus.nci.nih.gov/chemical/structure"}).done(function(text){_this.moleculeCache[this.smile]=text,values.length>0&&doRequest(values.pop()),_this.invalid=!0,_this.repaint()})},i=0;6>i;i++)doRequest(values.pop());this.updateSpanMapFunction()}this._updatePreferredSize()},postPaint:function(clip,context){context.lineWidth=1,context.strokeStyle="Grey";var project=this.project,setup=this._setup(context,clip),vector=setup.vector,start=setup.start,end=setup.end;this.isColumns?-1!==project.getHoverColumnIndex()&&this.drawColumnBorder(context,this.positions,project.getHoverColumnIndex(),this.getUnscaledHeight()):-1!==project.getHoverRowIndex()&&this.drawRowBorder(context,this.positions,project.getHoverRowIndex(),this.getUnscaledWidth()),this._highlightMatchingValues(context,vector,start,end)},_highlightMatchingValues:function(context,viewVector,start,end){var project=this.project,positions=this.positions;context.strokeStyle="black",context.lineWidth=3;var hoverIndex=this.isColumns?project.getHoverColumnIndex():project.getHoverRowIndex(),value=viewVector.getValue(hoverIndex);if(this.settings.highlightMatchingValues&&-1!==hoverIndex&&this.heatmap.mousePositionOptions&&this.heatmap.mousePositionOptions.name===viewVector.getName()){var valueToModelIndices=this.getFullVector().getProperties().get(morpheus.VectorKeys.VALUE_TO_INDICES);if(!valueToModelIndices){var fullVector=this.getFullVector();valueToModelIndices=morpheus.VectorUtil.createValueToIndicesMap(fullVector),fullVector.getProperties().set(morpheus.VectorKeys.VALUE_TO_INDICES,valueToModelIndices)}var indices=valueToModelIndices.get(value);if(null==indices)return void console.log("valueToModelIndices error");if(indices.length<=1)return;if(this.isColumns){if(-1!==project.getHoverColumnIndex()){var height=this.getUnscaledHeight();context.beginPath();for(var i=0,nindices=indices.length;nindices>i;i++){var viewIndex=project.convertModelColumnIndexToView(indices[i]);if(viewIndex>=start&&end>viewIndex){var size=positions.getItemSize(viewIndex),pix=positions.getPosition(viewIndex);context.rect(pix,0,size,height)}}context.stroke()}}else{context.beginPath();for(var width=this.getUnscaledWidth(),indices=valueToModelIndices.get(value),i=0,nindices=indices.length;nindices>i;i++){var viewIndex=project.convertModelRowIndexToView(indices[i]);if(viewIndex>=start&&end>viewIndex){var size=positions.getItemSize(viewIndex),pix=positions.getPosition(viewIndex);context.rect(0,pix,width,size)}}context.stroke()}}},drawSelection:function(options){var project=this.project,positions=this.positions,context=options.context,start=options.start,end=options.end;if(context.lineWidth=1,context.fillStyle=this.settings.selectionColor,this.isColumns){var height=this.getUnscaledHeight(),viewIndices=project.getColumnSelectionModel().getViewIndices();viewIndices.forEach(function(i){if(i>=start&&end>=i){var size=positions.getItemSize(i),pix=positions.getPosition(i);context.fillRect(pix,0,size,height)}})}else{var width=this.getUnscaledWidth();if(!this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)){var viewIndices=project.getRowSelectionModel().getViewIndices();viewIndices.forEach(function(i){if(i>=start&&end>=i){var size=positions.getItemSize(i),pix=positions.getPosition(i);context.fillRect(0,pix,width,size)}})}}},prePaint:function(clip,context){var setup=(this.project,this.positions,this._setup(context,clip)),start=setup.start,end=setup.end;this.drawSelection({context:context,start:start,end:end}),(this.invalid||start!==this.lastPosition.start||end!==this.lastPosition.end)&&(this.lastPosition.start=start,this.lastPosition.end=end,this.invalid=!0)},drawRowBorder:function(context,positions,index,gridSize){var size=positions.getItemSize(index),pix=positions.getPosition(index);context.beginPath(),context.moveTo(0,pix+size),context.lineTo(gridSize,pix+size),context.stroke(),context.beginPath(),context.moveTo(0,pix),context.lineTo(gridSize,pix),context.stroke()},drawColumnBorder:function(context,positions,index,gridSize){var size=positions.getItemSize(index),pix=positions.getPosition(index);context.beginPath(),context.moveTo(pix+size,0),context.lineTo(pix+size,gridSize),context.stroke(),context.beginPath(),context.moveTo(pix,0),context.lineTo(pix,gridSize),context.stroke()},isSquished:function(){return this.settings.squished},_setup:function(context,clip){var start=0,vector=this.getVector(),end=vector.size(),settings=this.settings,positions=this.positions,width=clip.width,height=clip.height;if(settings.squished||(this.isColumns?(start=morpheus.Positions.getLeft(clip,positions),end=morpheus.Positions.getRight(clip,positions)):(start=morpheus.Positions.getTop(clip,positions),end=morpheus.Positions.getBottom(clip,positions))),settings.squished){var total=positions.getPosition(positions.getLength()-1)+positions.getItemSize(positions.getLength()-1);if(this.isColumns){var squishFactor=width/total;context.scale(squishFactor,1)}else{var squishFactor=height/total;context.scale(1,squishFactor)}}else context.translate(-clip.x,-clip.y);return{start:start,end:end,vector:vector}},draw:function(clip,context){var setup=this._setup(context,clip);this._draw({start:setup.start,end:setup.end,vector:setup.vector,context:context,availableSpace:this.isColumns?this.getUnscaledHeight():this.getUnscaledWidth(),clip:clip})},print:function(clip,context){var vector=this.getVector();this._draw({start:0,end:vector.size(),vector:vector,context:context,availableSpace:this.isColumns?clip.height:clip.width,clip:clip})},_draw:function(options){var context=options.context,vector=options.vector,availableSpace=options.availableSpace,fullAvailableSpace=options.availableSpace,start=options.start,end=options.end,clip=options.clip,positions=this.positions;context.textAlign="left",context.fillStyle=morpheus.CanvasUtil.FONT_COLOR;var fontSize=Math.min(24,positions.getSize()-2),size=0;if(context.font=fontSize+"px "+morpheus.CanvasUtil.FONT_NAME,context.strokeStyle=morpheus.HeatMapElementCanvas.GRID_COLOR,context.lineWidth=.1,this.heatmap.heatmap.isDrawGrid()&&!this.settings.squished)if(this.isColumns)for(var gridSize=availableSpace,i=start;end>i;i++){var size=positions.getItemSize(i),pix=positions.getPosition(i);size>7&&(context.beginPath(),context.moveTo(pix+size,0),context.lineTo(pix+size,gridSize),context.stroke())}else if(!this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE))for(var gridSize=availableSpace,i=start;end>i;i++){var size=positions.getItemSize(i),pix=positions.getPosition(i);size>7&&(context.beginPath(),context.moveTo(0,pix+size),context.lineTo(gridSize,pix+size),context.stroke())}context.lineWidth=1;var offset=1;if(this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)&&(this.renderColor(context,vector,start,end,clip,this.isColumns?availableSpace:0,!this.settings.discrete),offset+=this.settings.colorBarSize+2,availableSpace-=offset),!this.settings.squished&&this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)&&(this.renderShape(context,vector,start,end,clip,this.isColumns?availableSpace-offset:offset),offset+=this.settings.colorBarSize+2,availableSpace-=offset),this.isRenderAs(morpheus.VectorTrack.RENDER.ARC)&&(this.renderArc(context,vector,start,end,clip,this.settings.arcSize),offset+=this.settings.arcSize+2,availableSpace-=offset),!this.settings.squished&&this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)&&this.renderMolecule(context,vector,start,end,clip,offset,availableSpace),this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT)){var barSize=this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)?this.settings.barSize:availableSpace-2;offset++,this.renderBoxPlot(context,vector,start,end,clip,offset,barSize),offset+=barSize+2,availableSpace-=offset}if(this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)){var barSize=this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)?this.settings.barSize:availableSpace-1;if(this.settings.stackedBar)this.renderStackedBar(context,vector,start,end,clip,offset,barSize);else{var fields=vector.getProperties().get(morpheus.VectorKeys.FIELDS),visibleFieldIndices=vector.getProperties().get(morpheus.VectorKeys.VISIBLE_FIELDS);null!=fields&&null==visibleFieldIndices&&(visibleFieldIndices=morpheus.Util.seq(fields.length)),null!=fields?this.renderUnstackedBar(context,vector,start,end,clip,offset,barSize,visibleFieldIndices):this.renderBar(context,vector,start,end,clip,offset,barSize)}offset+=barSize+2,availableSpace-=offset}!this.settings.squished&&this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)&&(this.renderText(context,vector,!0,start,end,clip,offset,this.isColumns?fullAvailableSpace:0),offset+=this.settings.maxTextWidth+2,availableSpace-=offset),this.textWidth=0,!this.settings.squished&&this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)&&(this.textWidth=availableSpace,this.renderText(context,vector,!1,start,end,clip,offset,this.isColumns?fullAvailableSpace:0),offset+=this.settings.textWidth+2,availableSpace-=offset)},showPopup:function(e,isHeader){function addSection(name){items.length>0&&items.push({separator:!0}),items=items.concat(sectionToItems[name])}if(this.heatmap.options.popupEnabled){var _this=this,project=this.project,isColumns=this.isColumns,hasSelection=isColumns?project.getColumnSelectionModel().count()>0:project.getRowSelectionModel().count()>0,ANNOTATE_SELECTION="Annotate Selection",INVERT_SELECTION="Invert Selection",SELECT_ALL="Select All",SHOW_SELECTION_ONLY="Show Selection Only",CLEAR_SELECTION="Clear Selection",HIGHLIGHT_MATCHING_VALUES="Highlight Matching Values",FIELDS="Fields...",DELETE="Delete...",TOOLTIP="Show In Tooltip",HIDE="Hide",REMOVE_SHOW_SELECTION_ONLY="Show All",SORT_ASC="Sort Ascending",SORT_DESC="Sort Descending",FILTER="Filter...",SORT_SEL_ASC="Sort Heat Map Ascending",SORT_SEL_DESC="Sort Heat Map Descending",SORT_SEL_TOP_N="Sort Heat Map Descending/Ascending",DISPLAY_BAR="Show Bar Chart",DISPLAY_STACKED_BAR="Stacked",DISPLAY_COLOR="Show Color",DISPLAY_TEXT="Show Text",DISPLAY_SHAPE="Show Shape",DISPLAY_ARC="Show Arc",DISPLAY_TEXT_AND_COLOR="Show Colored Text",DISPLAY_STRUCTURE="Show Chemical Structure",DISPLAY_CONTINUOUS="Continuous",TOGGLE="Expand/Collapse",positions=this.positions,heatmap=this.heatmap,sectionToItems={Sort:[],Selection:[],Display:[]};if(isHeader&§ionToItems.Sort.push({name:FILTER}),!isColumns){var toggle=!1,dataset=project.getSortedFilteredDataset();try{project.getRowSelectionModel().getViewIndices().forEach(function(index){if(-1!==dataset.getState(index))throw toggle=!0,"break"})}catch(x){}toggle&§ionToItems.Selection.push({name:TOGGLE})}var customItems=this.heatmap.getPopupItems();customItems&&customItems.length>0&&customItems.forEach(function(item){item.columns===isColumns&§ionToItems[item.section].push(item)}),sectionToItems.Selection.length>0&§ionToItems.Selection.push({separator:!0}),sectionToItems.Selection.push({name:"Copy"}),sectionToItems.Selection.push({separator:!0}),sectionToItems.Selection.push({name:ANNOTATE_SELECTION}),sectionToItems.Selection.push({name:INVERT_SELECTION}),sectionToItems.Selection.push({name:SELECT_ALL}),sectionToItems.Selection.push({name:CLEAR_SELECTION});var combinedFilter=isColumns?project.getColumnFilter():project.getRowFilter(),showSelectionOnlyIndex=combinedFilter.indexOf(SHOW_SELECTION_ONLY);-1!==showSelectionOnlyIndex&§ionToItems.Selection.push({name:REMOVE_SHOW_SELECTION_ONLY}),isHeader||(sectionToItems.Sort.push({name:SORT_SEL_ASC,disabled:!hasSelection}),sectionToItems.Sort.push({name:SORT_SEL_DESC,disabled:!hasSelection}),sectionToItems.Sort.push({name:SORT_SEL_TOP_N,disabled:!hasSelection}));var dataType=morpheus.VectorUtil.getDataType(this.getFullVector()),arrayFields=this.getFullVector().getProperties().get(morpheus.VectorKeys.FIELDS),isArray=void 0!==arrayFields,isNumber="number"===dataType||"[number]"===dataType;(isNumber||isArray)&§ionToItems.Display.push({name:DISPLAY_BAR,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)}),isArray&&(sectionToItems.Display.push({name:DISPLAY_STACKED_BAR,checked:this.settings.stackedBar}),sectionToItems.Display.push({name:FIELDS})),isArray||(sectionToItems.Display.push({name:DISPLAY_COLOR,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)}),sectionToItems.Display.push({name:DISPLAY_TEXT,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)}),sectionToItems.Display.push({name:DISPLAY_SHAPE,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)})),isArray||isNumber||this.isColumns||-1===name.toLowerCase().indexOf("smile")||sectionToItems.Display.push({name:DISPLAY_STRUCTURE,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)}),sectionToItems.Display.push({name:TOOLTIP,checked:this.settings.inlineTooltip}),isArray||sectionToItems.Display.push({name:HIGHLIGHT_MATCHING_VALUES,checked:this.settings.highlightMatchingValues}),sectionToItems.Display.push({name:"Squished",checked:this.settings.squished}),(this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT))&&(sectionToItems.Display.push({separator:!0}),this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)&§ionToItems.Display.push({name:"Edit Bar Color..."}),sectionToItems.Display.push({name:"Auto Range"}),sectionToItems.Display.push({name:"Custom Range..."})),(this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)||this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE))&&(sectionToItems.Display.push({separator:!0}),isNumber&§ionToItems.Display.push({name:DISPLAY_CONTINUOUS,checked:!this.settings.discrete}),(this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)&&isArray)&§ionToItems.Display.push({name:"Edit Colors..."}),this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)&§ionToItems.Display.push({name:"Edit Shapes..."}),(this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)&&isArray)&§ionToItems.Display.push({name:"Color Key",icon:"fa fa-key"})),this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)&§ionToItems.Display.push({name:"Shape Key",icon:"fa fa-key"}),sectionToItems.Display.push({separator:!0}),sectionToItems.Display.push({name:HIDE}),sectionToItems.Display.push({separator:!0}),sectionToItems.Display.push({name:DELETE});var items=[];addSection("Sort"),_.each(sectionToItems.Selection,function(item){item.name!==REMOVE_SHOW_SELECTION_ONLY&&item.name!==SELECT_ALL&&(item.disabled=!hasSelection)}),addSection(isHeader?"Display":"Selection"),e.preventDefault&&e.preventDefault(),morpheus.Popup.showPopup(items,{x:e.pageX,y:e.pageY},e.target,function(event,item){var customItem;if("Copy"===item){var dataset=project.getSortedFilteredDataset(),v=isColumns?dataset.getColumnMetadata().getByName(_this.name):dataset.getRowMetadata().getByName(_this.name),selectionModel=isColumns?project.getColumnSelectionModel():project.getRowSelectionModel(),text=[];selectionModel.getViewIndices().forEach(function(index){text.push(morpheus.Util.toString(v.getValue(index)))}),event.clipboardData.setData("text/plain",text.join(" "))}else if(item===FIELDS){var visibleFields,visibleFieldIndices=_this.getFullVector().getProperties().get(morpheus.VectorKeys.VISIBLE_FIELDS);if(null==visibleFieldIndices)visibleFields=arrayFields.slice(0);else{visibleFields=[];for(var i=0;ii;i++)viewIndices.has(i)||inverse.add(i);model.setViewIndices(inverse,!0)}else if(item===FILTER){var filter,vector=_this.getFullVector(),index=_this.isColumns?_this.project.getColumnFilter().indexOf(vector.getName()):_this.project.getRowFilter().indexOf(vector.getName());if(-1===index){if(morpheus.VectorUtil.isNumber(vector)&&morpheus.VectorUtil.containsMoreThanNValues(vector,9))filter=new morpheus.RangeFilter(NaN,NaN,vector.getName());else{var set=morpheus.VectorUtil.getSet(vector),array=set.values();array.sort(morpheus.SortKey.ASCENDING_COMPARATOR),filter=new morpheus.VectorFilter(set,set.size(),vector.getName())}filter&&(_this.isColumns?_this.project.getColumnFilter().add(filter,!0):_this.project.getRowFilter().add(filter,!0))}_this.isColumns?_this.project.getColumnFilter().trigger("focus",{}):_this.project.getRowFilter().trigger("focus",{})}else if(item===SORT_ASC||item===SORT_DESC){var sortKey=new morpheus.SortKey(_this.name,item===SORT_ASC?morpheus.SortKey.SortOrder.ASCENDING:morpheus.SortKey.SortOrder.DESCENDING);_this.isColumns?_this.project.setColumnSortKeys(morpheus.SortKey.keepExistingSortKeys([sortKey],project.getColumnSortKeys()),!0):_this.project.setRowSortKeys(morpheus.SortKey.keepExistingSortKeys([sortKey],project.getRowSortKeys()),!0)}else if(item==SORT_SEL_ASC||item==SORT_SEL_DESC||item===SORT_SEL_TOP_N){var sortOrder;sortOrder=item===SORT_SEL_ASC?morpheus.SortKey.SortOrder.ASCENDING:item===SORT_SEL_DESC?morpheus.SortKey.SortOrder.DESCENDING:morpheus.SortKey.SortOrder.TOP_N,heatmap.sortBasedOnSelection(sortOrder,isColumns,e&&e.shiftKey)}else if(item===SELECT_ALL){for(var selectionModel=isColumns?heatmap.getProject().getColumnSelectionModel():heatmap.getProject().getRowSelectionModel(),count=isColumns?heatmap.getProject().getSortedFilteredDataset().getColumnCount():heatmap.getProject().getSortedFilteredDataset().getRowCount(),indices=new morpheus.Set,i=0;count>i;i++)indices.add(i);selectionModel.setViewIndices(indices,!0)}else if("Auto Range"===item)delete _this.settings.min,delete _this.settings.max,delete _this.settings.mid,_this._update(),heatmap.revalidate();else if("Custom Range..."===item){var formBuilder=new morpheus.FormBuilder,items=[{name:"min",required:!0,type:"number",value:_this.settings.min},{name:"mid",required:!0,type:"number",value:_this.settings.mid},{name:"max",required:!0,type:"number",value:_this.settings.max}];_.each(items,function(item){formBuilder.append(item)}),morpheus.FormBuilder.showOkCancel({title:"Range",content:formBuilder.$form,okCallback:function(){_this.settings.min=parseFloat(formBuilder.getValue("min")),_this.settings.mid=parseFloat(formBuilder.getValue("mid")),_this.settings.max=parseFloat(formBuilder.getValue("max")),_this._update(),heatmap.revalidate()}})}else if("Squished"===item)_this.settings.squished=!_this.settings.squished,heatmap.revalidate();else if("Color Key"===item){var legend=new morpheus.HeatMapTrackColorLegend([_this],isColumns?_this.project.getColumnColorModel():_this.project.getRowColorModel()),size=legend.getPreferredSize();legend.setBounds(size),legend.repaint(),morpheus.FormBuilder.showInModal({title:"Color Key",html:legend.canvas})}else if("Shape Key"===item){var legend=new morpheus.HeatMapTrackShapeLegend([_this],isColumns?_this.project.getColumnShapeModel():_this.project.getRowShapeModel()),size=legend.getPreferredSize();legend.setBounds(size),legend.repaint(),morpheus.FormBuilder.showInModal({title:"Shape Key",html:legend.canvas})}else if("Edit Shapes..."===item){var shapeModel=(new morpheus.FormBuilder,isColumns?_this.project.getColumnShapeModel():_this.project.getRowShapeModel()),chooser=new morpheus.ShapeChooser({map:shapeModel.getMap(_this.name)});chooser.on("change",function(event){shapeModel.setMappedValue(_this.getFullVector(),event.value,event.shape),_this.setInvalid(!0),_this.repaint()}),morpheus.FormBuilder.showInModal({title:"Edit Shapes",html:chooser.$div,close:"Close"})}else if("Edit Colors..."===item){var colorSchemeChooser,colorModel=isColumns?_this.project.getColumnColorModel():_this.project.getRowColorModel();_this.settings.discrete?(colorSchemeChooser=new morpheus.DiscreteColorSchemeChooser({colorScheme:{scale:colorModel.getDiscreteColorScheme(_this.getFullVector())}}),colorSchemeChooser.on("change",function(event){colorModel.setMappedValue(_this.getFullVector(),event.value,event.color),_this.setInvalid(!0),_this.repaint()})):(colorSchemeChooser=new morpheus.HeatMapColorSchemeChooser({showRelative:!1}),colorSchemeChooser.setColorScheme(colorModel.getContinuousColorScheme(_this.getFullVector())),colorSchemeChooser.on("change",function(event){_this.setInvalid(!0),_this.repaint()})),morpheus.FormBuilder.showInModal({title:"Edit Colors",html:colorSchemeChooser.$div,close:"Close",callback:function(){colorSchemeChooser.dispose()}})}else if(item===TOOLTIP)_this.settings.inlineTooltip=!_this.settings.inlineTooltip;else if(item===HIGHLIGHT_MATCHING_VALUES)_this.settings.highlightMatchingValues=!_this.settings.highlightMatchingValues;else if(customItem=_.find(customItems,function(customItem){return customItem.name===item&&customItem.columns===isColumns}))if(customItem.task){var task={tabId:_this.heatmap.getTabManager().getActiveTabId()};_this.heatmap.getTabManager().addTask(task),setTimeout(function(){ -try{customItem.callback(heatmap)}catch(x){}_this.heatmap.getTabManager().removeTask(task)},1)}else customItem.callback(heatmap);else if(item===DISPLAY_CONTINUOUS)_this.settings.discrete=!_this.settings.discrete,_this._setChartMinMax(),_this.setInvalid(!0),_this.repaint();else if(item===HIDE)heatmap.setTrackVisible(_this.name,!1,_this.isColumns),heatmap.revalidate();else if(item===DISPLAY_STACKED_BAR)_this.settings.stackedBar=!_this.settings.stackedBar,_this._update(),heatmap.revalidate();else{item===DISPLAY_BAR?item=morpheus.VectorTrack.RENDER.BAR:item===DISPLAY_COLOR?item=morpheus.VectorTrack.RENDER.COLOR:item===DISPLAY_TEXT?item=morpheus.VectorTrack.RENDER.TEXT:item===DISPLAY_TEXT_AND_COLOR?item=morpheus.VectorTrack.RENDER.TEXT_AND_COLOR:item===DISPLAY_STRUCTURE?item=morpheus.VectorTrack.RENDER.MOLECULE:item===DISPLAY_SHAPE?item=morpheus.VectorTrack.RENDER.SHAPE:item===DISPLAY_ARC?item=morpheus.VectorTrack.RENDER.ARC:console.log("Unknown item "+item);var show=!_this.isRenderAs(item);show?_this.settings.renderMethod[item]=!0:delete _this.settings.renderMethod[item],_this._update(),heatmap.revalidate()}})}},renderColor:function(context,vector,start,end,clip,offset,continuous){var isColumns=this.isColumns,positions=this.positions,colorModel=isColumns?this.project.getColumnColorModel():this.project.getRowColorModel(),settings=this.settings,canvasSize=isColumns?this.getUnscaledHeight():this.getUnscaledWidth();settings.colorBarSize>canvasSize&&(settings.colorBarSize=canvasSize>=5?canvasSize-1:canvasSize);var getColor;getColor=continuous?_.bind(colorModel.getContinuousMappedValue,colorModel):_.bind(colorModel.getMappedValue,colorModel);for(var i=start;end>i;i++){var value=vector.getValue(i),position=positions.getPosition(i),size=positions.getItemSize(i),color=getColor(vector,value);context.fillStyle=color,isColumns?(context.beginPath(),context.rect(position,offset-settings.colorBarSize,size,settings.colorBarSize),context.fill()):(context.beginPath(),context.rect(offset,position,settings.colorBarSize,size),context.fill())}},renderShape:function(context,vector,start,end,clip,offset){var isColumns=this.isColumns,positions=this.positions,shapeModel=isColumns?this.project.getColumnShapeModel():this.project.getRowShapeModel(),settings=this.settings,canvasSize=isColumns?this.getUnscaledHeight():this.getUnscaledWidth();settings.colorBarSize>canvasSize&&(settings.colorBarSize=canvasSize>=5?canvasSize-1:canvasSize),context.fillStyle="black",context.strokeStyle="black";var lineWidth=context.lineWidth;context.lineWidth=1;for(var i=start;end>i;i++){var value=vector.getValue(i),position=positions.getPosition(i),itemSize=positions.getItemSize(i),minSize=Math.min(settings.colorBarSize,itemSize),size2=minSize/2,shape=shapeModel.getMappedValue(vector,value),x=isColumns?position+itemSize/2:offset+size2,y=isColumns?offset-size2:position+itemSize/2;size2-=.5,morpheus.CanvasUtil.drawShape(context,shape,x,y,size2)}context.lineWidth=lineWidth},renderArc:function(context,vector,start,end,clip,size){var isColumns=this.isColumns,positions=this.positions;this.project;context.save(),context.lineWidth=1;var fill=(d3.scale.linear().domain([1,size]).range([.8,1]).clamp(!0),d3.scale.category20b()),valueToIndices=morpheus.VectorUtil.createValueToIndicesMap(vector),total=positions.getPosition(positions.getLength()-1)+positions.getItemSize(positions.getLength()-1);context.translate(clip.x,clip.y);var width=clip.width,height=clip.height;if(isColumns){var squishFactor=width/total;context.scale(squishFactor,1)}else{var squishFactor=height/total;context.scale(1,squishFactor)}start=0,end=vector.size();for(var i=start;end>i;i++){var value=vector.getValue(i);if(null!=value){context.strokeStyle=fill(value);for(var indices=valueToIndices.get(value),pix=positions.getPosition(i)+positions.getItemSize(i)/2,j=0,nindices=indices.length;nindices>j;j++){var viewIndex=indices[j];if(viewIndex!==i){var endPix=positions.getPosition(viewIndex)+positions.getItemSize(viewIndex)/2,midPix=(endPix+pix)/2,arcRadius=(Math.abs(i-viewIndex),size);isColumns?(context.beginPath(),context.moveTo(pix,arcRadius),context.quadraticCurveTo(midPix,1,endPix,arcRadius)):(context.beginPath(),context.moveTo(1,pix),context.quadraticCurveTo(arcRadius,midPix,1,endPix)),context.stroke()}}}}context.restore()},sdfToSvg:function(sdf,width,height){this.jsme||"undefined"==typeof JSApplet||(this.jsmeId=_.uniqueId("m"),this.$jsmeDiv=$('
      ').appendTo($(document.body)),this.jsme=new JSApplet.JSME(this.jsmeId,"380px","340px",{})),this.jsme.readMolFile(sdf);var svg=$("#"+this.jsmeId+" > div > div > div:nth-child(2) > svg"),svgWidth=svg.width.baseVal.value,svgHeight=svg.height.baseVal.value,scale=Math.min(width/svgWidth,height/svgHeight),text=''+svg.innerHTML+"";return text},renderMolecule:function(context,vector,start,end,clip,offset){var positions=(this.isColumns,this.positions);context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,context.strokeStyle="black";for(var width=this.getUnscaledWidth(),customUrlProvider=void 0!==this.heatmap.options.structureUrlProvider,dummyTarget={childNodes:[],getContext:function(){return context}},i=start;end>i;i++){var spanEnd=this.spanMap.get(i);if(void 0!==spanEnd){var startPix=positions.getPosition(i),endPix=positions.getPosition(spanEnd-1)+positions.getSize(),size=endPix-startPix,value=vector.getValue(i),cache=this.moleculeCache[value];if(cache)if(customUrlProvider){if(cache.complete){var scaleFactor=Math.min(size/cache.height,width/cache.width),scaledWidth=cache.width*scaleFactor,scaledHeight=cache.height*scaleFactor,diff=cache.height-scaledHeight;startPix+=diff/2;try{context.drawImage(cache,offset,startPix,scaledWidth,scaledHeight)}catch(x){}}}else{var text=this.sdfToSvg(cache,width,size);canvg(dummyTarget,text,{ignoreMouse:!0,ignoreAnimation:!0,offsetY:startPix,ignoreClear:!0,ignoreDimensions:!0})}}}},createChartScale:function(availableSpace){var domain,range;this.settings.mid!==this.settings.min&&this.settings.mid!==this.settings.max?(domain=[this.settings.min,this.settings.mid,this.settings.max],range=this.isColumns?[availableSpace,availableSpace/2,0]:[0,availableSpace/2,availableSpace]):(domain=[this.settings.min,this.settings.max],range=this.isColumns?[availableSpace,0]:[0,availableSpace]);var scale=d3.scale.linear().domain(domain).range(range).clamp(!0);return scale},renderBar:function(context,vector,start,end,clip,offset,availableSpace){var isColumns=this.isColumns,positions=this.positions;context.fillStyle=this.settings.barColor;for(var scale=this.createChartScale(availableSpace),midPix=scale(this.settings.mid),settings=this.settings,discrete=settings.discrete&&null!=this.discreteValueMap,i=start;end>i;i++){var value=vector.getValue(i);discrete&&(value=this.discreteValueMap.get(value));var position=positions.getPosition(i),size=positions.getItemSize(i),scaledValue=scale(value);isColumns?(context.beginPath(),context.rect(position,Math.min(midPix,scaledValue),size,Math.abs(midPix-scaledValue)),context.fill()):(context.beginPath(),context.rect(offset+Math.min(midPix,scaledValue),position,Math.abs(midPix-scaledValue),size),context.fill())}},renderBoxPlot:function(context,vector,start,end,clip,offset,availableSpace){var isColumns=this.isColumns,positions=this.positions;context.strokeStyle="black",context.save(),context.translate(offset,0);var scale=this.createChartScale(availableSpace),visibleFieldIndices=vector.getProperties().get(morpheus.VectorKeys.VISIBLE_FIELDS);null==visibleFieldIndices&&(visibleFieldIndices=morpheus.Util.seq(vector.getProperties().get(morpheus.VectorKeys.FIELDS).length));for(var colorByVector=null!=this.settings.colorByField?this.getVector(this.settings.colorByField):null,colorModel=isColumns?this.project.getColumnColorModel():this.project.getRowColorModel(),i=start;end>i;i++){var array=vector.getValue(i);if(null!=array){var itemSize=positions.getItemSize(i);if(3>=itemSize)continue;var radius=2,pix=positions.getPosition(i),start=pix+1,end=pix+itemSize-1,center=(start+end)/2,_itemSize=itemSize-2,lineHeight=Math.max(2,_itemSize-8),box=array.box;if(null==box){var v=morpheus.VectorUtil.arrayAsVector(array);box=morpheus.BoxPlotItem(null!=visibleFieldIndices?new morpheus.SlicedVector(v,visibleFieldIndices):v),array.box=box}if(context.fillStyle="#bdbdbd",!isColumns){context.fillRect(Math.min(scale(box.q1),scale(box.q3)),start,Math.abs(scale(box.q1)-scale(box.q3)),_itemSize),context.fillRect(Math.min(scale(box.q1),scale(box.lowerAdjacentValue)),center-lineHeight/2,Math.abs(scale(box.q1)-scale(box.lowerAdjacentValue)),lineHeight),context.fillRect(Math.min(scale(box.q3),scale(box.upperAdjacentValue)),center-lineHeight/2,Math.abs(scale(box.q3)-scale(box.upperAdjacentValue)),lineHeight),context.fillStyle="#636363";for(var j=0,length=visibleFieldIndices.length;length>j;j++){var value=array[visibleFieldIndices[j]];if(null!=value){if(null!=colorByVector){var colorByArray=colorByVector.getValue(i);if(null!=colorByArray){var color=colorModel.getMappedValue(colorByVector,colorByArray[visibleFieldIndices[j]]);context.fillStyle=color}else context.fillStyle="#636363"}var pix=scale(value);context.beginPath(),context.arc(pix,center,radius,2*Math.PI,!1),context.fill()}}}}}context.restore()},renderStackedBar:function(context,vector,start,end,clip,offset,availableSpace){var isColumns=this.isColumns,positions=this.positions,scale=this.createChartScale(availableSpace),midPix=scale(this.settings.mid),colorModel=(this.settings,isColumns?this.project.getColumnColorModel():this.project.getRowColorModel()),selectionModel=isColumns?this.project.getRowSelectionModel():null,selectedModelIndices=null==selectionModel?[]:selectionModel.toModelIndices();context.strokeStyle="black",context.lineWidth=2;for(var i=start;end>i;i++){var array=vector.getValue(i);if(null!=array){var selectedBins=new morpheus.Set;if(null!=array.modelIndexToBin)for(var j=0;jj;j++){var value=array[j];value>=this.settings.mid?positivePairs.push({value:value,index:j}):0>value&&negativePairs.push({value:value,index:j})}for(var positiveIndices=morpheus.Util.indexSortPairs(positivePairs,!1),j=0,length=positiveIndices.length;length>j;j++){var index=positiveIndices[j],value=array[index],color=colorModel.getMappedValue(vector,index);context.fillStyle=color;var scaledValue=scale(value),nextScaledValue=j===length-1?midPix:scale(array[positiveIndices[j+1]]);if(isColumns?(context.beginPath(),context.rect(position,Math.min(nextScaledValue,scaledValue),size,Math.abs(nextScaledValue-scaledValue)),context.fill()):(context.beginPath(),context.rect(offset+Math.min(nextScaledValue,scaledValue),position,Math.abs(nextScaledValue-scaledValue),size),context.fill()),selectedBins.has(index)){context.beginPath();var ytop=(nextScaledValue+scaledValue)/2;context.moveTo(position,ytop),context.lineTo(position+size,ytop),context.stroke()}}for(var negativeIndices=morpheus.Util.indexSortPairs(negativePairs,!0),j=0,length=negativeIndices.length;length>j;j++){var index=negativeIndices[j],value=array[index],color=colorModel.getMappedValue(vector,index);context.fillStyle=color;var scaledValue=scale(value),nextScaledValue=j===length-1?midPix:scale(array[negativeIndices[j+1]]);if(isColumns?(context.beginPath(),context.rect(position,Math.min(nextScaledValue,scaledValue),size,Math.abs(nextScaledValue-scaledValue)),context.fill()):(context.beginPath(),context.rect(offset+Math.min(nextScaledValue,scaledValue),position,Math.abs(nextScaledValue-scaledValue),size),context.fill()),selectedBins.has(index)){context.beginPath();var ytop=(nextScaledValue+scaledValue)/2;context.moveTo(position,ytop),context.lineTo(position+size,ytop),context.stroke()}}}}context.lineWidth=1},renderUnstackedBar:function(context,vector,start,end,clip,offset,availableSpace,fieldIndices){var isColumns=this.isColumns,positions=this.positions,nvalues=fieldIndices.length,colorModel=(this.settings,isColumns?this.project.getColumnColorModel():this.project.getRowColorModel());context.fillStyle=this.settings.barColor;var barSpacer=0,barWidth=(availableSpace-(nvalues-1)*barSpacer)/nvalues,colorByVector=null!=this.settings.colorByField?this.getVector(this.settings.colorByField):null;context.strokeStyle="white";for(var i=start;end>i;i++){var array=vector.getValue(i);if(null!=array)for(var position=positions.getPosition(i),itemSize=positions.getItemSize(i),scale=this.createChartScale(itemSize-1),midPix=scale(this.settings.mid),xpix=0,j=0;nvalues>j;j++){var value=array[fieldIndices[j]];if(null!=colorByVector){var colorByArray=colorByVector.getValue(i),color=colorModel.getMappedValue(colorByVector,null!=colorByArray?colorByArray[fieldIndices[j]]:null);context.fillStyle=color}var scaledValue=scale(value);if(isColumns)context.beginPath(),context.rect(Math.min(midPix,scaledValue),offset+xpix,Math.abs(midPix-scaledValue),barWidth),context.fill();else{context.beginPath();var barHeight=Math.abs(midPix-scaledValue),ypix=position+itemSize-Math.max(midPix,scaledValue);context.rect(offset+xpix,ypix,barWidth,barHeight),context.fill()}xpix+=barWidth+barSpacer}}},renderText:function(context,vector,isColor,start,end,clip,offset,canvasSize){context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,context.textBaseline="middle";var positions=this.positions,isColumns=this.isColumns,colorModel=isColumns?this.project.getColumnColorModel():this.project.getRowColorModel();isColumns&&context.translate(clip.x,clip.y);for(var toStringFunction=morpheus.VectorTrack.vectorToString(vector),i=start;end>i;i++){var size=this.positions.getItemSize(i);if(!(6>size)){var value=vector.getValue(i);if(null!=value){value=toStringFunction(value);var position=positions.getPosition(i);isColor&&(context.fillStyle=colorModel.getMappedValue(vector,value)),isColumns?(context.save(),context.translate(position+size/2-clip.x,canvasSize-clip.y-offset),context.rotate(-Math.PI/2),context.fillText(value,0,0),context.restore()):context.fillText(value,offset,position+size/2)}}}}},morpheus.Util.extend(morpheus.VectorTrack,morpheus.AbstractCanvas),morpheus.VectorTrackHeader=function(project,name,isColumns,controller){function getResizeCursor(pos){return isColumns&&pos.y>=_this.getUnscaledHeight()-3?"ns-resize":pos.x>=_this.getUnscaledWidth()-3?"ew-resize":void 0}morpheus.AbstractCanvas.call(this),this.project=project,this.name=name,this.isColumns=isColumns;var canvas=this.canvas;this.controller=controller;var vector=(isColumns?project.getFullDataset().getColumnMetadata():project.getFullDataset().getRowMetadata()).getByName(name);vector&&vector.getProperties().has(morpheus.VectorKeys.TITLE)&&(this.canvas.setAttribute("title",vector.getProperties().get(morpheus.VectorKeys.TITLE)),$(this.canvas).tooltip());var _this=this;this.setBounds({height:this.defaultFontHeight+morpheus.VectorTrackHeader.FONT_OFFSET});var mouseMove=function(event){if(!morpheus.CanvasUtil.dragging){var pos=morpheus.CanvasUtil.getMousePos(event.target,event),cursor=getResizeCursor(pos);canvas.style.cursor=cursor?cursor:"default",_this.isMouseOver=!0,_this.repaint()}},mouseExit=function(e){morpheus.CanvasUtil.dragging||(canvas.style.cursor="default"),_this.isMouseOver=!1,_this.repaint()},showPopup=function(e){controller.setSelectedTrack(_this.name,isColumns);var track=controller.getTrack(_this.name,isColumns);if(!track)throw _this.name+" track not found";return e.preventDefault(),e.stopPropagation&&e.stopPropagation(),e.stopImmediatePropagation&&e.stopImmediatePropagation(),track.showPopup(e,!0),!1};this.selectedBackgroundColor="#c8c8c8",this.backgroundColor="#f9f9f9",$(this.canvas).css("background-color",this.backgroundColor).on("mousemove.morpheus",mouseMove).on("mouseout.morpheus",mouseExit).on("mouseenter.morpheus",mouseMove),$(this.canvas).on("contextmenu.morpheus",showPopup);var resizeCursor,dragStartPosition,dragStartWidth=0,dragStartHeight=0,dragging=!1;this.hammer=morpheus.Util.hammer(canvas,["pan","tap","longpress"]).on("longpress",function(event){event.preventDefault(),controller.setSelectedTrack(_this.name,isColumns);var track=controller.getTrack(_this.name,isColumns);track.showPopup(event.srcEvent,!0)}).on("panend",function(event){_this.isMouseOver=!1,morpheus.CanvasUtil.dragging=!1,canvas.style.cursor="default";var index=controller.getTrackIndex(_this.name,isColumns),header=controller.getTrackHeaderByIndex(index,isColumns),track=controller.getTrackByIndex(index,isColumns),$canvas=$(track.canvas);$canvas.css("z-index","0"),$(header.canvas).css("z-index","0"),controller.revalidate()}).on("panstart",function(event){if(_this.isMouseOver=!1,!morpheus.CanvasUtil.dragging)if(resizeCursor=getResizeCursor(morpheus.CanvasUtil.getMousePos(event.target,event,!0)))morpheus.CanvasUtil.dragging=!0,canvas.style.cursor=resizeCursor,dragStartWidth=_this.getUnscaledWidth(),dragStartHeight=_this.getUnscaledHeight(),event.preventDefault(),dragging=!1;else{var index=controller.getTrackIndex(_this.name,isColumns);if(-1==index)throw _this.name+" not found";var header=controller.getTrackHeaderByIndex(index,isColumns),track=controller.getTrackByIndex(index,isColumns);controller.setSelectedTrack(_this.name,isColumns);var $canvas=$(track.canvas);dragStartPosition=$canvas.position(),$canvas.css("z-index","100"),$(header.canvas).css("z-index","100"),morpheus.CanvasUtil.dragging=!0,resizeCursor=void 0,dragging=!0}}).on("panmove",function(event){if(_this.isMouseOver=!1,resizeCursor){var width,height;if("ew-resize"===resizeCursor){var dx=event.deltaX;width=Math.max(8,dragStartWidth+dx)}if("ns-resize"===resizeCursor){var dy=event.deltaY;height=Math.max(8,dragStartHeight+dy)}controller.resizeTrack(_this.name,width,height,isColumns)}else if(dragging){var index=controller.getTrackIndex(_this.name,isColumns),header=controller.getTrackHeaderByIndex(index,isColumns),track=controller.getTrackByIndex(index,isColumns),ntracks=controller.getNumTracks(isColumns),delta=isColumns?event.deltaY:event.deltaX,newIndex=index+(delta>0?1:-1);newIndex=Math.min(Math.max(0,newIndex),ntracks-1);var prop=isColumns?"top":"left",w=isColumns?"getUnscaledHeight":"getUnscaledWidth",trackBounds={};trackBounds[prop]=dragStartPosition[prop]+delta,track.setBounds(trackBounds),header.setBounds(trackBounds);var dragOverTrack=controller.getTrackByIndex(newIndex,isColumns),dragOverWidth=dragOverTrack[w](),dragOverLeft=$(dragOverTrack.canvas).position()[prop],dragleft=dragStartPosition[prop]+delta,dragright=dragleft+track[w]();if((delta>0&&dragright>=dragOverLeft+dragOverWidth/2||0>delta&&dragOverLeft+dragOverWidth/2>=dragleft)&&index!==newIndex){controller.moveTrack(index,newIndex,isColumns);var otherHeader=controller.getTrackHeaderByIndex(index,isColumns),otherTrack=controller.getTrackByIndex(index,isColumns),$movedCanvas=$(otherTrack.canvas),newLeft=$movedCanvas.position()[prop];0>delta?newLeft+=track[w]():newLeft-=track[w]();var otherBounds={};otherBounds[prop]=newLeft,otherTrack.setBounds(otherBounds),otherHeader.setBounds(otherBounds)}}}).on("tap",function(event){if((!morpheus.Util.IS_MAC||!event.srcEvent.ctrlKey)&&(_this.isMouseOver=!1,controller.setSelectedTrack(_this.name,isColumns),(!isColumns||controller.options.columnsSortable)&&(isColumns||controller.options.rowsSortable))){var sortOrder,sortKey,additionalSort=event.srcEvent.shiftKey,isGroupBy=!1,existingSortKeyIndex=_this.getSortKeyIndexForColumnName(_this.getSortKeys(),_this.name);-1!=existingSortKeyIndex?(sortKey=_this.getSortKeys()[existingSortKeyIndex],sortOrder=sortKey.getSortOrder()===morpheus.SortKey.SortOrder.UNSORTED?morpheus.SortKey.SortOrder.ASCENDING:sortKey.getSortOrder()===morpheus.SortKey.SortOrder.ASCENDING?morpheus.SortKey.SortOrder.DESCENDING:morpheus.SortKey.SortOrder.UNSORTED):(sortKey=new morpheus.SortKey(_this.name,morpheus.SortKey.SortOrder.ASCENDING),sortOrder=morpheus.SortKey.SortOrder.ASCENDING),null!=sortKey&&(sortKey.setSortOrder(sortOrder),_this.setSortingStatus(_this.getSortKeys(),sortKey,additionalSort,isGroupBy))}})},morpheus.VectorTrackHeader.FONT_OFFSET=2,morpheus.VectorTrackHeader.prototype={selected:!1,isMouseOver:!1,defaultFontHeight:11,dispose:function(){morpheus.AbstractCanvas.prototype.dispose.call(this),$(this.canvas).off("contextmenu.morpheus mousemove.morpheus mouseout.morpheus mouseenter.morpheus"),this.hammer.destroy()},getPreferredSize:function(){var size=this.getPrintSize();return size.width+=22,this.isColumns||(size.height=this.defaultFontHeight+morpheus.VectorTrackHeader.FONT_OFFSET),size},getPrintSize:function(){var context=this.canvas.getContext("2d");context.font=this.defaultFontHeight+"px "+morpheus.CanvasUtil.FONT_NAME;var width=4+context.measureText(this.name).width;return{width:width,height:this.getUnscaledHeight()}},getSortKeys:function(){return this.isColumns?this.project.getColumnSortKeys():this.project.getRowSortKeys()},setOrder:function(sortKeys){this.isColumns?this.project.setColumnSortKeys(morpheus.SortKey.keepExistingSortKeys(sortKeys,this.project.getColumnSortKeys()),!1):this.project.setRowSortKeys(morpheus.SortKey.keepExistingSortKeys(sortKeys,this.project.getRowSortKeys()),!1)},setGroupBy:function(groupBy){for(var existingGroupBy=this.isColumns?this.project.groupColumns:this.project.groupRows,index=-1,i=0,length=existingGroupBy.length;length>i;i++)if(existingGroupBy[i].toString()===groupBy.toString()){index=i;break}var newGroupBy=[groupBy];-1!==index&&(newGroupBy=existingGroupBy,newGroupBy.splice(index,1)),this.isColumns?this.project.setGroupColumns(newGroupBy,!0):this.project.setGroupRows(newGroupBy,!0)},setSelected:function(selected){selected!=this.selected&&(this.selected=selected,$(this.canvas).css({"background-color":this.selected?this.selectedBackgroundColor:this.backgroundColor}))},setSortingStatus:function(sortKeys,sortKey,additionalSort,isGroupBy){if(!isGroupBy)if(sortKey.getSortOrder()!=morpheus.SortKey.SortOrder.UNSORTED||additionalSort){if(additionalSort&&0==sortKeys.length&&(additionalSort=!1),additionalSort){var sortKeyIndex=this.getSortKeyIndexForColumnName(sortKeys,sortKey.toString());-1===sortKeyIndex?sortKeys.push(sortKey):sortKeys[sortKeyIndex]=sortKey}else sortKeys=[sortKey];this.setOrder(sortKeys)}else this.setOrder([]);isGroupBy?this.setGroupBy(sortKey):this.isColumns?this.project.trigger("columnSortOrderChanged"):this.project.trigger("rowSortOrderChanged")},getSortKeyIndexForColumnName:function(sortKeys,columnName){if(null!=sortKeys)for(var i=0,size=sortKeys.length;size>i;i++)if(columnName===sortKeys[i].toString())return i;return-1},print:function(clip,context){clip.height<=6||(context.textBaseline="bottom",this.isColumns?(context.textAlign="right",context.font=Math.min(this.defaultFontHeight,clip.height-morpheus.VectorTrackHeader.FONT_OFFSET)+"px "+morpheus.CanvasUtil.FONT_NAME):(context.textAlign="left",context.font=clip.height-morpheus.VectorTrackHeader.FONT_OFFSET+"px "+morpheus.CanvasUtil.FONT_NAME),context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,context.fillText(this.name,0,0))},draw:function(clip,context){var sortKeys=this.getSortKeys(),name=this.name,existingSortKeyIndex=this.getSortKeyIndexForColumnName(sortKeys,name);if(morpheus.CanvasUtil.resetTransform(context),context.clearRect(0,0,this.getUnscaledWidth(),this.getUnscaledHeight()),!(this.getUnscaledHeight()<5)){this.isColumns?(context.beginPath(),context.moveTo(0,this.getUnscaledHeight()),context.lineTo(this.getUnscaledWidth(),this.getUnscaledHeight()),context.stroke(),context.textAlign="right"):(context.beginPath(),context.moveTo(this.getUnscaledWidth(),0),context.lineTo(this.getUnscaledWidth(),this.getUnscaledHeight()),context.stroke(),context.textAlign="left");var fontHeight=Math.min(this.defaultFontHeight,this.getUnscaledHeight()-morpheus.VectorTrackHeader.FONT_OFFSET),squished=this.controller.getTrack(this.name,this.isColumns).settings.squished;context.font=(squished?"Italic ":"")+fontHeight+"px "+morpheus.CanvasUtil.FONT_NAME;var textWidth=context.measureText(name).width,isColumns=this.isColumns,xpix=this.isColumns?this.getUnscaledWidth()-2:10;isColumns&&(-1!=existingSortKeyIndex&&(xpix-=6),sortKeys.length>1&&(xpix-=6));var ypix=this.isColumns?this.getUnscaledHeight()/2:this.getUnscaledHeight()-(this.defaultFontHeight+morpheus.VectorTrackHeader.FONT_OFFSET)/2;if(context.textBaseline="middle",this.isMouseOver){context.fillStyle="rgb(0,0,0)";for(var xdot=xpix-(isColumns?textWidth+4:4),ydot=ypix-3,i=0;2>i;i++)for(var j=0;3>j;j++)context.fillRect(xdot-3*i,ydot+3*j,1.5,1.5)}if(context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,context.fillText(name,xpix,ypix),context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,-1!==existingSortKeyIndex){context.beginPath();var x=this.isColumns?xpix+4:xpix+textWidth+6,arrowHeight=Math.min(8,this.getUnscaledHeight()/2-1),arrowWidth=3;sortKeys[existingSortKeyIndex].getSortOrder()===morpheus.SortKey.SortOrder.ASCENDING?(context.translate(x,ypix-arrowHeight),context.moveTo(0,0),context.lineTo(arrowWidth,arrowHeight),context.lineTo(-arrowWidth,arrowHeight)):sortKeys[existingSortKeyIndex].getSortOrder()===morpheus.SortKey.SortOrder.DESCENDING?(context.translate(x,ypix),context.moveTo(0,arrowHeight),context.lineTo(arrowWidth,0),context.lineTo(-arrowWidth,0)):(context.translate(x,ypix-arrowHeight/2),context.moveTo(0,0),context.lineTo(arrowWidth,arrowHeight/2),context.lineTo(0,arrowHeight),context.lineTo(-arrowWidth,arrowHeight/2)),context.fill(),morpheus.CanvasUtil.resetTransform(context),sortKeys.length>1&&(context.textAlign="left",context.font="8px "+morpheus.CanvasUtil.FONT_NAME,context.fillText(""+(existingSortKeyIndex+1),x+4,ypix-3))}}}},morpheus.Util.extend(morpheus.VectorTrackHeader,morpheus.AbstractCanvas),morpheus.AverageLinkage=function(nelements,distmatrix){var j,n,clusterid,number,result;clusterid=[],number=[],result=[];for(var i=0;nelements-1>i;i++)result[i]={left:0,right:0,distance:0};for(j=0;nelements>j;j++)number[j]=1,clusterid[j]=j;var r={};for(n=nelements;n>1;n--){morpheus.HCluster.findClosestPair(n,distmatrix,r),result[nelements-n]={},result[nelements-n].distance=r.distance;var is=r.ip,js=r.jp;result[nelements-n].left=clusterid[is],result[nelements-n].right=clusterid[js];var sum=number[is]+number[js];for(j=0;js>j;j++)distmatrix[js][j]=distmatrix[is][j]*number[is]+distmatrix[js][j]*number[js],distmatrix[js][j]/=sum;for(j=js+1;is>j;j++)distmatrix[j][js]=distmatrix[is][j]*number[is]+distmatrix[j][js]*number[js],distmatrix[j][js]/=sum;for(j=is+1;n>j;j++)distmatrix[j][js]=distmatrix[j][is]*number[is]+distmatrix[j][js]*number[js],distmatrix[j][js]/=sum;for(j=0;is>j;j++)distmatrix[is][j]=distmatrix[n-1][j];for(j=is+1;n-1>j;j++)distmatrix[j][is]=distmatrix[n-1][j];number[js]=sum,number[is]=number[n-1],clusterid[js]=n-nelements-1,clusterid[is]=clusterid[n-1]}return result},morpheus.CollapseDataset=function(dataset,collapseToFields,summarizeFunction,shallowCopy){for(var vectors=[],i=0;iseries;series++)collapsedDataset.addSeries({name:dataset.getName(i),dataType:"Float32"});shallowCopy?collapsedDataset.setColumnMetadata(dataset.getColumnMetadata()):morpheus.MetadataUtil.copy(dataset.getColumnMetadata(),collapsedDataset.getColumnMetadata());for(var nfields=collapseToFields.length,collapseToVectors=[],i=0;nfields>i;i++)collapseToVectors.push(collapsedDataset.getRowMetadata().add(collapseToFields[i]));var counter=0;return idToIndices.forEach(function(rowIndices,key){for(var slice=morpheus.DatasetUtil.slicedView(dataset,rowIndices,null),view=new morpheus.DatasetColumnView(slice),series=0;nseries>series;series++){view.setSeriesIndex(series);for(var j=0,ncols=dataset.getColumnCount();ncols>j;j++)view.setIndex(j),collapsedDataset.setValue(counter,j,summarizeFunction(view),series)}for(var i=0;nfields>i;i++){var collapsedToVector=collapseToVectors[i],vector=vectors[i];collapsedToVector.setValue(counter,vector.getValue(rowIndices[0]))}counter++}),collapsedDataset},morpheus.CompleteLinkage=function(nelements,distmatrix){for(var j,n,clusterid=[],result=[],i=0;nelements-1>i;i++)result[i]={left:0,right:0,distance:0};for(j=0;nelements>j;j++)clusterid[j]=j;var r={};for(n=nelements;n>1;n--){morpheus.HCluster.findClosestPair(n,distmatrix,r),result[nelements-n].distance=r.distance;var is=r.ip,js=r.jp;for(j=0;js>j;j++)distmatrix[js][j]=Math.max(distmatrix[is][j],distmatrix[js][j]);for(j=js+1;is>j;j++)distmatrix[j][js]=Math.max(distmatrix[is][j],distmatrix[j][js]);for(j=is+1;n>j;j++)distmatrix[j][js]=Math.max(distmatrix[j][is],distmatrix[j][js]);for(j=0;is>j;j++)distmatrix[is][j]=distmatrix[n-1][j];for(j=is+1;n-1>j;j++)distmatrix[j][is]=distmatrix[n-1][j];result[nelements-n].left=clusterid[is],result[nelements-n].right=clusterid[js],clusterid[js]=n-nelements-1,clusterid[is]=clusterid[n-1]}return result},morpheus.HCluster=function(distmatrix,linkageAlgorithm){var nelements=distmatrix.length,nNodes=nelements-1;if(-1===nNodes){var root={id:0,height:0,index:0,minIndex:0,maxIndex:0,depth:0};return this.tree={maxHeight:0,rootNode:root,leafNodes:[],nLeafNodes:0},void(this.reorderedIndices=[0])}for(var tree=linkageAlgorithm(nelements,distmatrix),nodeorder=[],nodecounts=[],order=[],nodeID=[],i=0;nelements>i;i++)order[i]=i;for(var leftIds=[],rightIds=[],i=0;nNodes>i;i++){var order1,order2,counts1,counts2,ID1,ID2,min1=tree[i].left,min2=tree[i].right;if(nodeID[i]=nNodes+(i+2),0>min1){var index1=-min1-1;order1=nodeorder[index1],counts1=nodecounts[index1],ID1=nodeID[index1],tree[i].distance=Math.max(tree[i].distance,tree[index1].distance)}else order1=order[min1],counts1=1,ID1=min1;if(0>min2){var index2=-min2-1;order2=nodeorder[index2],counts2=nodecounts[index2],ID2=nodeID[index2],tree[i].distance=Math.max(tree[i].distance,tree[index2].distance)}else order2=order[min2],counts2=1,ID2=min2;leftIds[i]=ID1,rightIds[i]=ID2,nodecounts[i]=counts1+counts2,nodeorder[i]=(counts1*order1+counts2*order2)/(counts1+counts2)}for(var reorderedIndices=morpheus.HCluster.treeSort(nNodes,order,nodeorder,nodecounts,tree),idToIndex={},i=0,length=reorderedIndices.length;length>i;i++){var index=reorderedIndices[i];idToIndex[index]=i}for(var node,nodeIdToNode={},i=0,length=nodeID.length;length>i;i++){var id=nodeID[i],leftId=leftIds[i],lnode=nodeIdToNode[leftId];if(void 0===lnode){lnode={id:leftId};var index=idToIndex[leftId];lnode.index=index,lnode.minIndex=index,lnode.maxIndex=index,nodeIdToNode[lnode.id]=lnode}var rightId=rightIds[i],rnode=nodeIdToNode[rightId];if(void 0===rnode){rnode={id:rightId};var index=idToIndex[rightId];rnode.index=index,rnode.minIndex=index,rnode.maxIndex=index,nodeIdToNode[rnode.id]=rnode}node={id:id,children:[lnode,rnode],height:tree[i].distance,index:(rnode.index+lnode.index)/2},node.minIndex=Math.min(rnode.minIndex,lnode.minIndex),node.maxIndex=Math.max(rnode.maxIndex,lnode.maxIndex),lnode.parent=node,rnode.parent=node,nodeIdToNode[node.id]=node}this.reorderedIndices=reorderedIndices;for(var leafNodes=[],i=0,length=reorderedIndices.length;length>i;i++){var leaf=nodeIdToNode[reorderedIndices[i]];leaf.height=0,leafNodes.push(leaf)}morpheus.AbstractDendrogram.setNodeDepths(node),this.tree={maxHeight:node.height,rootNode:node,leafNodes:leafNodes,nLeafNodes:leafNodes.length}},morpheus.HCluster.findClosestPair=function(n,distmatrix,r){var i,j,temp,distance=distmatrix[1][0],ip=1,jp=0;for(i=1;n>i;i++)for(j=0;i>j;j++)temp=distmatrix[i][j], -distance>temp&&(distance=temp,ip=i,jp=j);r.distance=distance,r.ip=ip,r.jp=jp},morpheus.HCluster.computeDistanceMatrix=function(dataset,distanceFunction){for(var matrix=[],n=dataset.getRowCount(),i=1;n>i;i++)matrix[i]=new Float32Array(i);if(0===distanceFunction)for(var i=1;n>i;i++)for(var j=0;i>j;j++)matrix[i][j]=dataset.getValue(i,j);else if(1===distanceFunction)for(var i=1;n>i;i++)for(var j=0;i>j;j++)matrix[i][j]=1-dataset.getValue(i,j);else for(var list1=new morpheus.DatasetRowView(dataset),list2=new morpheus.DatasetRowView(dataset),i=1;n>i;i++){list1.setIndex(i);for(var j=0;i>j;j++)matrix[i][j]=distanceFunction(list1,list2.setIndex(j))}return matrix},morpheus.HCluster.treeSort=function(nNodes,order,nodeorder,nodecounts,tree){var i,nElements=nNodes+1,neworder=[],clusterids=[];for(i=0;nElements>i;i++)clusterids[i]=i,neworder[i]=0;for(i=0;nNodes>i;i++){var i1=tree[i].left,i2=tree[i].right,order1=0>i1?nodeorder[-i1-1]:order[i1],order2=0>i2?nodeorder[-i2-1]:order[i2],count1=0>i1?nodecounts[-i1-1]:1,count2=0>i2?nodecounts[-i2-1]:1;if(i2>i1){var j,increase=order2>order1?count1:count2;for(j=0;nElements>j;j++){var clusterid=clusterids[j];clusterid==i1&&order1>=order2&&(neworder[j]+=increase),clusterid==i2&&order2>order1&&(neworder[j]+=increase),clusterid!=i1&&clusterid!=i2||(clusterids[j]=-i-1)}}else{var j,increase=order2>=order1?count1:count2;for(j=0;nElements>j;j++){var clusterid=clusterids[j];clusterid==i1&&order1>order2&&(neworder[j]+=increase),clusterid==i2&&order2>=order1&&(neworder[j]+=increase),clusterid!=i1&&clusterid!=i2||(clusterids[j]=-i-1)}}}return morpheus.Util.indexSort(neworder,!0)},morpheus.HClusterGroupBy=function(dataset,groupByFieldNames,distanceFunction,linkageMethod){var vectors=(dataset.getRowMetadata(),morpheus.MetadataUtil.getVectors(dataset.getRowMetadata(),groupByFieldNames)),idToIndices=morpheus.VectorUtil.createValuesToIndicesMap(vectors),reorderedIndices=[],offset=0,root={id:-1,children:[],height:0},tree={maxHeight:0,rootNode:root,leafNodes:[],nLeafNodes:0};idToIndices.forEach(function(rowIndices,id){var hcl,originalIndicesForGroup=idToIndices.get(id),subset=morpheus.DatasetUtil.slicedView(dataset,originalIndicesForGroup,null),distanceMatrix=morpheus.HCluster.computeDistanceMatrix(subset,distanceFunction);hcl=new morpheus.HCluster(distanceMatrix,linkageMethod);for(var reorderedGroupIndices=hcl.reorderedIndices,i=0,rows=subset.getRowCount();rows>i;i++){var originalIndex=originalIndicesForGroup[reorderedGroupIndices[i]];reorderedIndices.push(originalIndex)}morpheus.AbstractDendrogram.dfs(hcl.tree.rootNode,function(node){return node.index+=offset,node.minIndex+=offset,node.maxIndex+=offset,node.id+=offset,!0}),0===hcl.tree.leafNodes.length?tree.leafNodes=tree.leafNodes.concat([hcl.tree.rootNode]):tree.leafNodes=tree.leafNodes.concat(hcl.tree.leafNodes),root.children.push(hcl.tree.rootNode),isNaN(hcl.tree.maxHeight)||(tree.maxHeight=Math.max(tree.maxHeight,hcl.tree.maxHeight)),offset+=subset.getRowCount()}),tree.nLeafNodes=tree.leafNodes.length,tree.rootNode.height=tree.maxHeight,this.tree=tree,this.reorderedIndices=reorderedIndices},morpheus.PermutationPValues=function(dataset,aIndices,bIndices,numPermutations,f){for(var numRows=dataset.getRowCount(),scores=new Float32Array(numRows),smoothPValues=!0,list1=new morpheus.DatasetRowView(new morpheus.SlicedDatasetView(dataset,null,aIndices)),list2=new morpheus.DatasetRowView(new morpheus.SlicedDatasetView(dataset,null,bIndices)),i=0;numRows>i;i++)scores[i]=f(list1.setIndex(i),list2.setIndex(i));dataset=new morpheus.SlicedDatasetView(dataset,null,aIndices.concat(bIndices));var rowSpecificPValues=new Float32Array(numRows),permuter=new morpheus.UnbalancedPermuter(aIndices.length,bIndices.length),permutationScore=new morpheus.TwoClassPermutationScore;permutationScore.init(dataset,f);for(var permutationIndex=0;numPermutations>permutationIndex;permutationIndex++){permutationScore.setPermutation(permuter.next());for(var i=0;numRows>i;i++){var permutedScore=permutationScore.getScore(i),score=scores[i];permutedScore>=score&&rowSpecificPValues[i]++}}for(var N=numPermutations,kArray=new Uint32Array(numRows),i=0;numRows>i;i++){var k=rowSpecificPValues[i];kArray[i]=k;var p;p=smoothPValues?(k+1)/(N+2):k/N;var oneMinusP=1-p;if(p>oneMinusP&&(p=oneMinusP),p*=2,0===p){for(var val=dataset.getValue(i,0),flat=!0,j=1,cols=dataset.getColumnCount();cols>j&♭j++)dataset.getValue(i,j)!=val&&(flat=!1);flat&&(p=1)}rowSpecificPValues[i]=p}this.rowSpecificPValues=rowSpecificPValues,this.k=kArray,this.fdr=morpheus.FDR_BH(rowSpecificPValues),this.scores=scores},morpheus.PermutationPValues.prototype={getBonferroni:function(index){return Math.min(this.rowSpecificPValues[index]*this.numRows,1)}},morpheus.UnbalancedPermuter=function(numClassZero,numClassOne){function getRandomIntInclusive(min,max){return Math.floor(Math.random()*(max-min+1))+min}for(var assignments=new Uint32Array(numClassZero+numClassOne),indices=new Uint32Array(numClassZero+numClassOne),i=0;i=1;i--){var j=getRandomIntInclusive(0,i),tmp=indices[j];indices[j]=indices[i],indices[i]=tmp}for(var i=0;n>i;i++)assignments[i]=0;for(var i=0;numClassOne>i;i++)assignments[indices[i]]=1;return assignments}},morpheus.TwoClassPermutationScore=function(){this.classZeroView=null,this.classOneView=null},morpheus.TwoClassPermutationScore.prototype={getScore:function(index){return this.classZeroView.setIndex(index),this.classOneView.setIndex(index),this.f(this.classZeroView,this.classOneView)},init:function(dataset,f){this.dataset=dataset,this.classZeroView=new morpheus.DatasetRowView(dataset),this.classOneView=new morpheus.DatasetRowView(dataset),this.f=f},setPermutation:function(permutedAssignments){for(var zeroIndices=[],oneIndices=[],i=0,length=permutedAssignments.length;length>i;i++)0===permutedAssignments[i]?zeroIndices.push(i):oneIndices.push(i);this.classZeroView.setDataset(new morpheus.SlicedDatasetView(this.dataset,null,zeroIndices)),this.classOneView.setDataset(new morpheus.SlicedDatasetView(this.dataset,null,oneIndices))}},morpheus.Ranking=function(values){for(var ranks=[],i=0,length=values.length;length>i;i++)ranks.push({value:values[i],position:i});if(0===ranks.length)return[];ranks.sort(function(a,b){return a.valueranks[i-1].value?(pos=i+1,tiesTrace.length>1&&morpheus.Ranking.fillAverage(out,tiesTrace),tiesTrace=[],tiesTrace.push(ranks[i].position)):tiesTrace.push(ranks[i].position),out[ranks[i].position]=pos;return tiesTrace.length>1&&morpheus.Ranking.fillAverage(out,tiesTrace),out},morpheus.Ranking.fill=function(data,tiesTrace,value){for(var i=0,length=tiesTrace.length;length>i;i++)data[tiesTrace[i]]=value},morpheus.Ranking.fillAverage=function(ranks,tiesTrace){var c=ranks[tiesTrace[0]],length=tiesTrace.length;morpheus.Ranking.fill(ranks,tiesTrace,(2*c+length-1)/2)},morpheus.SingleLinkage=function(nelements,distmatrix){var i,j,k,nnodes=nelements-1,temp=[],index=[],vector=[],result=[];for(i=0;nelements>i;i++)result[i]={left:0,right:0,distance:0};for(i=0;nnodes>i;i++)vector[i]=i;for(i=0;nelements>i;i++){for(result[i].distance=Number.MAX_VALUE,j=0;i>j;j++)temp[j]=distmatrix[i][j];for(j=0;i>j;j++)k=vector[j],result[j].distance>=temp[j]?(result[j].distancej;j++)result[j].distance>=result[vector[j]].distance&&(vector[j]=i)}for(i=0;nnodes>i;i++)result[i].left=i;for(result.sort(function(node1,node2){var term1=node1.distance,term2=node2.distance;return term2>term1?-1:term1>term2?1:0}),i=0;nelements>i;i++)index[i]=i;for(i=0;nnodes>i;i++)j=result[i].left,k=vector[j],result[i].left=index[j],result[i].right=index[k],index[k]=-i-1;var result2=[];for(i=0;nelements-1>i;i++)result2[i]=result[i];return result2}; \ No newline at end of file +var formatter=function(v){return""+v},dataType=morpheus.VectorUtil.getDataType(vector);return"number"===dataType?formatter=morpheus.Util.nf:"[number]"===dataType?formatter=function(v){var s=[];if(null!=v)for(var i=0,arrayLength=v.length;arrayLength>i;i++)s.push(morpheus.Util.nf(v[i]));return s.join(", ")}:"[string]"===dataType&&(formatter=function(v){var s=[];if(null!=v)for(var i=0,arrayLength=v.length;arrayLength>i;i++)s.push(v[i]);return s.join(", ")}),formatter},morpheus.VectorTrack.prototype={settingFromConfig:function(conf){var settings=this.settings;if(_.isString(conf)){settings.renderMethod={};for(var tokens=conf.split(","),i=0,length=tokens.length;length>i;i++){var method=$.trim(tokens[i]);method=method.toUpperCase();var mapped=morpheus.VectorTrack.RENDER[method];void 0!==mapped?settings.renderMethod[mapped]=!0:"DISCRETE"===method?(settings.discrete=!0,settings.discreteAutoDetermined=!0):"CONTINUOUS"===method?(settings.discrete=!1,settings.discreteAutoDetermined=!0):"HIGHLIGHT"===method?settings.highlightMatchingValues=!0:"STACKED_BAR"===method?(settings.stackedBar=!0,settings.renderMethod[morpheus.VectorTrack.RENDER.BAR]=!0):"BOX_PLOT"===method?settings.renderMethod[morpheus.VectorTrack.RENDER.BOX_PLOT]=!0:console.log(method+" not found.")}}else _.isNumber(conf)?(settings.renderMethod={},settings.renderMethod[conf]=!0):_.isObject(conf)&&(conf.maxTextWidth=void 0,this.settings=$.extend({},this.settings,conf));this._update()},isDiscrete:function(){return this.settings.discrete},setShowTooltip:function(value){this.settings.tooltip=value},isShowTooltip:function(){return this.settings.tooltip},isRenderAs:function(value){return this.settings.renderMethod[value]},dispose:function(){morpheus.AbstractCanvas.prototype.dispose.call(this),$(this.canvas).off("contextmenu.morpheus mousemove.morpheus mouseout.morpheus"),this.project.off(this.events,this.updateSpanMapFunction)},getName:function(){return this.name},getVector:function(name){name=null==name?this.name:name;var vector=this.isColumns?this.project.getSortedFilteredDataset().getColumnMetadata().getByName(name):this.project.getSortedFilteredDataset().getRowMetadata().getByName(name);return vector?vector:new morpheus.Vector(name,0)},getFullVector:function(){var vector=this.isColumns?this.project.getFullDataset().getColumnMetadata().getByName(this.name):this.project.getFullDataset().getRowMetadata().getByName(this.name);return vector?vector:new morpheus.Vector(this.name,0)},_updatePreferredSize:function(){var size=this._computePreferredSize();this.preferredSize.width=size.width,this.preferredSize.height=size.height},_computePreferredSize:function(forPrint){var width=0,height=0;if(this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)||this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR))if(this.positions.getSize()>=6){var context=this.canvas.getContext("2d"),textWidth=morpheus.CanvasUtil.getVectorStringWidth(context,this.getVector(),this.positions,forPrint?-1:this.isColumns?120:100);forPrint||(textWidth=Math.min(textWidth,this.isColumns?100:500),this.settings.maxTextWidth=textWidth),width+=textWidth}else forPrint||(this.settings.maxTextWidth=0);this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)&&(width+=this.settings.barSize),this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)&&(width+=this.settings.colorBarSize),this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)&&(width+=this.settings.colorBarSize),this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)&&(width+=300),forPrint||this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)||(width=Math.min(300,width)),this.isRenderAs(morpheus.VectorTrack.RENDER.ARC)&&(width+=this.settings.arcSize),this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT)&&(width+=100);var nkeys=_.keys(this.settings.renderMethod).length;return nkeys>0&&(width+=2*(nkeys-1)),width=Math.max(0,width),this.isColumns?{width:height,height:width}:{width:width,height:height}},getPreferredSize:function(){return this.preferredSize},getPrintSize:function(){return this._computePreferredSize(!0)},_createDiscreteValueMap:function(){var values=morpheus.VectorUtil.getValues(this.getFullVector());values.sort(morpheus.SortKey.ASCENDING_COMPARATOR),this.discreteValueMap=new morpheus.Map;for(var i=0,length=values.length;length>i;i++)this.discreteValueMap.set(values[i],i+1);this.settings.min=0,this.settings.mid=0,this.settings.max=values.length},_setChartMinMax:function(){if(this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT))if(this.settings.stackedBar||!this.settings.discrete||this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT)){if(null==this.settings.min||null==this.settings.max||null==this.settings.mid){var vector=this.getFullVector(),minMax=morpheus.VectorUtil.getMinMax(vector),min=minMax.min,max=minMax.max;if(this.settings.minMaxReversed){var tmp=max;max=min,min=tmp}null==this.settings.min&&(this.settings.min=Math.min(0,min)),null==this.settings.max&&(this.settings.max=Math.max(0,max)),null==this.settings.mid&&(this.settings.mid=this.settings.min<0?0:this.settings.min)}}else this.discreteValueMap||this._createDiscreteValueMap()},_update:function(){if(!this.settings.discreteAutoDetermined&&(this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BAR))&&((this.getFullVector().getProperties().has(morpheus.VectorKeys.FIELDS)||"number"===morpheus.VectorUtil.getDataType(this.getFullVector()))&&(this.settings.discrete=!1,this.settings.highlightMatchingValues=!1),this.settings.discreteAutoDetermined=!0),this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)&&this.project.off(this.events,this.updateSpanMapFunction),this._setChartMinMax(),this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)&&(this.project.on(this.events,this.updateSpanMapFunction),!this.moleculeCache)){this.moleculeCache={};var _this=this,valueToModelIndices=this.getFullVector().getProperties().get(morpheus.VectorKeys.VALUE_TO_INDICES);if(!valueToModelIndices){var fullVector=this.getFullVector();valueToModelIndices=morpheus.VectorUtil.createValueToIndicesMap(fullVector),fullVector.getProperties().set(morpheus.VectorKeys.VALUE_TO_INDICES,valueToModelIndices)}if(void 0!==_this.heatmap.options.structureUrlProvider)valueToModelIndices.forEach(function(indices,value){var url=_this.heatmap.options.structureUrlProvider(value),image=new Image;image.src=url,_this.moleculeCache[value]=image}),setTimeout(2e3,function(){_this.setInvalid(!0),_this.repaint()});else for(var values=valueToModelIndices.keys(),doRequest=function(smile){$.ajax({contentType:"text/plain",context:{smile:smile},data:{string:smile,representation:"sdf"},url:"http://cactus.nci.nih.gov/chemical/structure"}).done(function(text){_this.moleculeCache[this.smile]=text,values.length>0&&doRequest(values.pop()),_this.invalid=!0,_this.repaint()})},i=0;6>i;i++)doRequest(values.pop());this.updateSpanMapFunction()}this._updatePreferredSize()},postPaint:function(clip,context){context.lineWidth=1,context.strokeStyle="Grey";var project=this.project,setup=this._setup(context,clip),vector=setup.vector,start=setup.start,end=setup.end;this.isColumns?-1!==project.getHoverColumnIndex()&&this.drawColumnBorder(context,this.positions,project.getHoverColumnIndex(),this.getUnscaledHeight()):-1!==project.getHoverRowIndex()&&this.drawRowBorder(context,this.positions,project.getHoverRowIndex(),this.getUnscaledWidth()),this._highlightMatchingValues(context,vector,start,end)},_highlightMatchingValues:function(context,viewVector,start,end){var project=this.project,positions=this.positions;context.strokeStyle="black",context.lineWidth=3;var hoverIndex=this.isColumns?project.getHoverColumnIndex():project.getHoverRowIndex(),value=viewVector.getValue(hoverIndex);if(this.settings.highlightMatchingValues&&-1!==hoverIndex&&this.heatmap.mousePositionOptions&&this.heatmap.mousePositionOptions.name===viewVector.getName()){var valueToModelIndices=this.getFullVector().getProperties().get(morpheus.VectorKeys.VALUE_TO_INDICES);if(!valueToModelIndices){var fullVector=this.getFullVector();valueToModelIndices=morpheus.VectorUtil.createValueToIndicesMap(fullVector),fullVector.getProperties().set(morpheus.VectorKeys.VALUE_TO_INDICES,valueToModelIndices)}var indices=valueToModelIndices.get(value);if(null==indices)return void console.log("valueToModelIndices error");if(indices.length<=1)return;if(this.isColumns){if(-1!==project.getHoverColumnIndex()){var height=this.getUnscaledHeight();context.beginPath();for(var i=0,nindices=indices.length;nindices>i;i++){var viewIndex=project.convertModelColumnIndexToView(indices[i]);if(viewIndex>=start&&end>viewIndex){var size=positions.getItemSize(viewIndex),pix=positions.getPosition(viewIndex);context.rect(pix,0,size,height)}}context.stroke()}}else{context.beginPath();for(var width=this.getUnscaledWidth(),indices=valueToModelIndices.get(value),i=0,nindices=indices.length;nindices>i;i++){var viewIndex=project.convertModelRowIndexToView(indices[i]);if(viewIndex>=start&&end>viewIndex){var size=positions.getItemSize(viewIndex),pix=positions.getPosition(viewIndex);context.rect(0,pix,width,size)}}context.stroke()}}},drawSelection:function(options){var project=this.project,positions=this.positions,context=options.context,start=options.start,end=options.end;if(context.lineWidth=1,context.fillStyle=this.settings.selectionColor,this.isColumns){var height=this.getUnscaledHeight(),viewIndices=project.getColumnSelectionModel().getViewIndices();viewIndices.forEach(function(i){if(i>=start&&end>=i){var size=positions.getItemSize(i),pix=positions.getPosition(i);context.fillRect(pix,0,size,height)}})}else{var width=this.getUnscaledWidth();if(!this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)){var viewIndices=project.getRowSelectionModel().getViewIndices();viewIndices.forEach(function(i){if(i>=start&&end>=i){var size=positions.getItemSize(i),pix=positions.getPosition(i);context.fillRect(0,pix,width,size)}})}}},prePaint:function(clip,context){var setup=(this.project,this.positions,this._setup(context,clip)),start=setup.start,end=setup.end;this.drawSelection({context:context,start:start,end:end}),(this.invalid||start!==this.lastPosition.start||end!==this.lastPosition.end)&&(this.lastPosition.start=start,this.lastPosition.end=end,this.invalid=!0)},drawRowBorder:function(context,positions,index,gridSize){var size=positions.getItemSize(index),pix=positions.getPosition(index);context.beginPath(),context.moveTo(0,pix+size),context.lineTo(gridSize,pix+size),context.stroke(),context.beginPath(),context.moveTo(0,pix),context.lineTo(gridSize,pix),context.stroke()},drawColumnBorder:function(context,positions,index,gridSize){var size=positions.getItemSize(index),pix=positions.getPosition(index);context.beginPath(),context.moveTo(pix+size,0),context.lineTo(pix+size,gridSize),context.stroke(),context.beginPath(),context.moveTo(pix,0),context.lineTo(pix,gridSize),context.stroke()},isSquished:function(){return this.settings.squished},_setup:function(context,clip){var start=0,vector=this.getVector(),end=vector.size(),settings=this.settings,positions=this.positions,width=clip.width,height=clip.height;if(settings.squished||(this.isColumns?(start=morpheus.Positions.getLeft(clip,positions),end=morpheus.Positions.getRight(clip,positions)):(start=morpheus.Positions.getTop(clip,positions),end=morpheus.Positions.getBottom(clip,positions))),settings.squished){var total=positions.getPosition(positions.getLength()-1)+positions.getItemSize(positions.getLength()-1);if(this.isColumns){var squishFactor=width/total;context.scale(squishFactor,1)}else{var squishFactor=height/total;context.scale(1,squishFactor)}}else context.translate(-clip.x,-clip.y);return{start:start,end:end,vector:vector}},draw:function(clip,context){var setup=this._setup(context,clip);this._draw({start:setup.start,end:setup.end,vector:setup.vector,context:context,availableSpace:this.isColumns?this.getUnscaledHeight():this.getUnscaledWidth(),clip:clip})},print:function(clip,context){var vector=this.getVector();this._draw({start:0,end:vector.size(),vector:vector,context:context,availableSpace:this.isColumns?clip.height:clip.width,clip:clip})},_draw:function(options){var context=options.context,vector=options.vector,availableSpace=options.availableSpace,fullAvailableSpace=options.availableSpace,start=options.start,end=options.end,clip=options.clip,positions=this.positions;context.textAlign="left",context.fillStyle=morpheus.CanvasUtil.FONT_COLOR;var fontSize=Math.min(24,positions.getSize()-2),size=0;if(context.font=fontSize+"px "+morpheus.CanvasUtil.FONT_NAME,context.strokeStyle=morpheus.HeatMapElementCanvas.GRID_COLOR,context.lineWidth=.1,this.heatmap.heatmap.isDrawGrid()&&!this.settings.squished)if(this.isColumns)for(var gridSize=availableSpace,i=start;end>i;i++){var size=positions.getItemSize(i),pix=positions.getPosition(i);size>7&&(context.beginPath(),context.moveTo(pix+size,0),context.lineTo(pix+size,gridSize),context.stroke())}else if(!this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE))for(var gridSize=availableSpace,i=start;end>i;i++){var size=positions.getItemSize(i),pix=positions.getPosition(i);size>7&&(context.beginPath(),context.moveTo(0,pix+size),context.lineTo(gridSize,pix+size),context.stroke())}context.lineWidth=1;var offset=1;if(this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)&&(this.renderColor(context,vector,start,end,clip,this.isColumns?availableSpace:0,!this.settings.discrete),offset+=this.settings.colorBarSize+2,availableSpace-=offset),!this.settings.squished&&this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)&&(this.renderShape(context,vector,start,end,clip,this.isColumns?availableSpace-offset:offset),offset+=this.settings.colorBarSize+2,availableSpace-=offset),this.isRenderAs(morpheus.VectorTrack.RENDER.ARC)&&(this.renderArc(context,vector,start,end,clip,this.settings.arcSize),offset+=this.settings.arcSize+2,availableSpace-=offset),!this.settings.squished&&this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)&&this.renderMolecule(context,vector,start,end,clip,offset,availableSpace),this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT)){var barSize=this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)?this.settings.barSize:availableSpace-2;offset++,this.renderBoxPlot(context,vector,start,end,clip,offset,barSize),offset+=barSize+2,availableSpace-=offset}if(this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)){var barSize=this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)?this.settings.barSize:availableSpace-1;if(this.settings.stackedBar)this.renderStackedBar(context,vector,start,end,clip,offset,barSize);else{var fields=vector.getProperties().get(morpheus.VectorKeys.FIELDS),visibleFieldIndices=vector.getProperties().get(morpheus.VectorKeys.VISIBLE_FIELDS);null!=fields&&null==visibleFieldIndices&&(visibleFieldIndices=morpheus.Util.seq(fields.length)),null!=fields?this.renderUnstackedBar(context,vector,start,end,clip,offset,barSize,visibleFieldIndices):this.renderBar(context,vector,start,end,clip,offset,barSize)}offset+=barSize+2,availableSpace-=offset}!this.settings.squished&&this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)&&(this.renderText(context,vector,!0,start,end,clip,offset,this.isColumns?fullAvailableSpace:0),offset+=this.settings.maxTextWidth+2,availableSpace-=offset),this.textWidth=0,!this.settings.squished&&this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)&&(this.textWidth=availableSpace,this.renderText(context,vector,!1,start,end,clip,offset,this.isColumns?fullAvailableSpace:0),offset+=this.settings.textWidth+2,availableSpace-=offset)},showPopup:function(e,isHeader){function addSection(name){items.length>0&&items.push({separator:!0}),items=items.concat(sectionToItems[name])}if(this.heatmap.options.popupEnabled){var _this=this,project=this.project,isColumns=this.isColumns,hasSelection=isColumns?project.getColumnSelectionModel().count()>0:project.getRowSelectionModel().count()>0,ANNOTATE_SELECTION="Annotate Selection",INVERT_SELECTION="Invert Selection",SELECT_ALL="Select All",SHOW_SELECTION_ONLY="Show Selection Only",CLEAR_SELECTION="Clear Selection",HIGHLIGHT_MATCHING_VALUES="Highlight Matching Values",FIELDS="Fields...",DELETE="Delete...",TOOLTIP="Show In Tooltip",HIDE="Hide",HIDE_OTHERS="Hide Others",REMOVE_SHOW_SELECTION_ONLY="Show All",SORT_ASC="Sort Ascending",SORT_DESC="Sort Descending",FILTER="Filter...",SORT_SEL_ASC="Sort Heat Map Ascending",SORT_SEL_DESC="Sort Heat Map Descending",SORT_SEL_TOP_N="Sort Heat Map Descending/Ascending",DISPLAY_BAR="Show Bar Chart",DISPLAY_STACKED_BAR="Stacked",DISPLAY_COLOR="Show Color",DISPLAY_TEXT="Show Text",DISPLAY_SHAPE="Show Shape",DISPLAY_ARC="Show Arc",DISPLAY_TEXT_AND_COLOR="Show Colored Text",DISPLAY_STRUCTURE="Show Chemical Structure",DISPLAY_CONTINUOUS="Continuous",TOGGLE="Expand/Collapse",positions=this.positions,heatmap=this.heatmap,sectionToItems={Sort:[],Selection:[],Display:[]};if(isHeader&§ionToItems.Sort.push({name:FILTER}),!isColumns){var toggle=!1,dataset=project.getSortedFilteredDataset();try{project.getRowSelectionModel().getViewIndices().forEach(function(index){if(-1!==dataset.getState(index))throw toggle=!0,"break"})}catch(x){}toggle&§ionToItems.Selection.push({name:TOGGLE})}var customItems=this.heatmap.getPopupItems();customItems&&customItems.length>0&&customItems.forEach(function(item){item.columns===isColumns&§ionToItems[item.section].push(item)}),sectionToItems.Selection.length>0&§ionToItems.Selection.push({separator:!0}),sectionToItems.Selection.push({name:"Copy"}),sectionToItems.Selection.push({separator:!0}),sectionToItems.Selection.push({name:ANNOTATE_SELECTION}),sectionToItems.Selection.push({name:INVERT_SELECTION}),sectionToItems.Selection.push({name:SELECT_ALL}),sectionToItems.Selection.push({name:CLEAR_SELECTION});var combinedFilter=isColumns?project.getColumnFilter():project.getRowFilter(),showSelectionOnlyIndex=combinedFilter.indexOf(SHOW_SELECTION_ONLY);-1!==showSelectionOnlyIndex&§ionToItems.Selection.push({name:REMOVE_SHOW_SELECTION_ONLY}),isHeader||(sectionToItems.Sort.push({name:SORT_SEL_ASC,disabled:!hasSelection}),sectionToItems.Sort.push({name:SORT_SEL_DESC,disabled:!hasSelection}),sectionToItems.Sort.push({name:SORT_SEL_TOP_N,disabled:!hasSelection}));var dataType=morpheus.VectorUtil.getDataType(this.getFullVector()),arrayFields=this.getFullVector().getProperties().get(morpheus.VectorKeys.FIELDS),isArray=void 0!==arrayFields,isNumber="number"===dataType||"[number]"===dataType;(isNumber||isArray)&§ionToItems.Display.push({name:DISPLAY_BAR,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)}),isArray&&(sectionToItems.Display.push({name:DISPLAY_STACKED_BAR,checked:this.settings.stackedBar}),sectionToItems.Display.push({name:FIELDS})),isArray||(sectionToItems.Display.push({name:DISPLAY_COLOR,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)}),sectionToItems.Display.push({name:DISPLAY_TEXT,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT)}),sectionToItems.Display.push({name:DISPLAY_SHAPE,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)})),isArray||isNumber||this.isColumns||-1===name.toLowerCase().indexOf("smile")||sectionToItems.Display.push({name:DISPLAY_STRUCTURE,checked:this.isRenderAs(morpheus.VectorTrack.RENDER.MOLECULE)}),sectionToItems.Display.push({name:TOOLTIP,checked:this.settings.inlineTooltip}),isArray||sectionToItems.Display.push({name:HIGHLIGHT_MATCHING_VALUES,checked:this.settings.highlightMatchingValues}),sectionToItems.Display.push({name:"Squished",checked:this.settings.squished}),(this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BOX_PLOT))&&(sectionToItems.Display.push({separator:!0}),this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)&§ionToItems.Display.push({name:"Edit Bar Color..."}),sectionToItems.Display.push({name:"Auto Range"}),sectionToItems.Display.push({name:"Custom Range..."})),(this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)||this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE))&&(sectionToItems.Display.push({separator:!0}),isNumber&§ionToItems.Display.push({name:DISPLAY_CONTINUOUS,checked:!this.settings.discrete}),(this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)&&isArray)&§ionToItems.Display.push({name:"Edit Colors..."}),this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)&§ionToItems.Display.push({name:"Edit Shapes..."}),(this.isRenderAs(morpheus.VectorTrack.RENDER.COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.TEXT_AND_COLOR)||this.isRenderAs(morpheus.VectorTrack.RENDER.BAR)&&isArray)&§ionToItems.Display.push({name:"Color Key",icon:"fa fa-key"})),this.isRenderAs(morpheus.VectorTrack.RENDER.SHAPE)&§ionToItems.Display.push({name:"Shape Key",icon:"fa fa-key"}),sectionToItems.Display.push({separator:!0}),sectionToItems.Display.push({name:HIDE}),sectionToItems.Display.push({name:HIDE_OTHERS,disabled:heatmap.getVisibleTrackNames(this.isColumns).length<=1}),sectionToItems.Display.push({separator:!0}),sectionToItems.Display.push({name:DELETE});var items=[];addSection("Sort"),_.each(sectionToItems.Selection,function(item){item.name!==REMOVE_SHOW_SELECTION_ONLY&&item.name!==SELECT_ALL&&(item.disabled=!hasSelection)}),addSection(isHeader?"Display":"Selection"),e.preventDefault&&e.preventDefault(),morpheus.Popup.showPopup(items,{x:e.pageX,y:e.pageY},e.target,function(event,item){var customItem;if("Copy"===item){var dataset=project.getSortedFilteredDataset(),v=isColumns?dataset.getColumnMetadata().getByName(_this.name):dataset.getRowMetadata().getByName(_this.name),selectionModel=isColumns?project.getColumnSelectionModel():project.getRowSelectionModel(),text=[];selectionModel.getViewIndices().forEach(function(index){text.push(morpheus.Util.toString(v.getValue(index)))}),event.clipboardData.setData("text/plain",text.join(" "))}else if(item===FIELDS){var visibleFields,visibleFieldIndices=_this.getFullVector().getProperties().get(morpheus.VectorKeys.VISIBLE_FIELDS);if(null==visibleFieldIndices)visibleFields=arrayFields.slice(0);else{visibleFields=[];for(var i=0;ii;i++)viewIndices.has(i)||inverse.add(i);model.setViewIndices(inverse,!0)}else if(item===FILTER){var filter,vector=_this.getFullVector(),index=_this.isColumns?_this.project.getColumnFilter().indexOf(vector.getName()):_this.project.getRowFilter().indexOf(vector.getName());if(-1===index){if(morpheus.VectorUtil.isNumber(vector)&&morpheus.VectorUtil.containsMoreThanNValues(vector,9))filter=new morpheus.RangeFilter(NaN,NaN,vector.getName());else{var set=morpheus.VectorUtil.getSet(vector),array=set.values();array.sort(morpheus.SortKey.ASCENDING_COMPARATOR),filter=new morpheus.VectorFilter(set,set.size(),vector.getName())}filter&&(_this.isColumns?_this.project.getColumnFilter().add(filter,!0):_this.project.getRowFilter().add(filter,!0))}_this.isColumns?_this.project.getColumnFilter().trigger("focus",{}):_this.project.getRowFilter().trigger("focus",{})}else if(item===SORT_ASC||item===SORT_DESC){var sortKey=new morpheus.SortKey(_this.name,item===SORT_ASC?morpheus.SortKey.SortOrder.ASCENDING:morpheus.SortKey.SortOrder.DESCENDING);_this.isColumns?_this.project.setColumnSortKeys(morpheus.SortKey.keepExistingSortKeys([sortKey],project.getColumnSortKeys()),!0):_this.project.setRowSortKeys(morpheus.SortKey.keepExistingSortKeys([sortKey],project.getRowSortKeys()),!0)}else if(item==SORT_SEL_ASC||item==SORT_SEL_DESC||item===SORT_SEL_TOP_N){var sortOrder;sortOrder=item===SORT_SEL_ASC?morpheus.SortKey.SortOrder.ASCENDING:item===SORT_SEL_DESC?morpheus.SortKey.SortOrder.DESCENDING:morpheus.SortKey.SortOrder.TOP_N,heatmap.sortBasedOnSelection(sortOrder,isColumns,e&&e.shiftKey)}else if(item===SELECT_ALL){for(var selectionModel=isColumns?heatmap.getProject().getColumnSelectionModel():heatmap.getProject().getRowSelectionModel(),count=isColumns?heatmap.getProject().getSortedFilteredDataset().getColumnCount():heatmap.getProject().getSortedFilteredDataset().getRowCount(),indices=new morpheus.Set,i=0;count>i;i++)indices.add(i);selectionModel.setViewIndices(indices,!0)}else if("Auto Range"===item)delete _this.settings.min,delete _this.settings.max,delete _this.settings.mid,_this._update(),heatmap.revalidate();else if("Custom Range..."===item){var formBuilder=new morpheus.FormBuilder,items=[{name:"min",required:!0,type:"number",value:_this.settings.min},{name:"mid",required:!0,type:"number",value:_this.settings.mid},{name:"max",required:!0,type:"number",value:_this.settings.max}];_.each(items,function(item){formBuilder.append(item)}),morpheus.FormBuilder.showOkCancel({title:"Range",content:formBuilder.$form,okCallback:function(){_this.settings.min=parseFloat(formBuilder.getValue("min")),_this.settings.mid=parseFloat(formBuilder.getValue("mid")),_this.settings.max=parseFloat(formBuilder.getValue("max")),_this._update(),heatmap.revalidate()}})}else if("Squished"===item)_this.settings.squished=!_this.settings.squished,heatmap.revalidate();else if("Color Key"===item){var legend=new morpheus.HeatMapTrackColorLegend([_this],isColumns?_this.project.getColumnColorModel():_this.project.getRowColorModel()),size=legend.getPreferredSize();legend.setBounds(size),legend.repaint(),morpheus.FormBuilder.showInModal({title:"Color Key",html:legend.canvas})}else if("Shape Key"===item){var legend=new morpheus.HeatMapTrackShapeLegend([_this],isColumns?_this.project.getColumnShapeModel():_this.project.getRowShapeModel()),size=legend.getPreferredSize();legend.setBounds(size),legend.repaint(),morpheus.FormBuilder.showInModal({title:"Shape Key",html:legend.canvas})}else if("Edit Shapes..."===item){var shapeModel=(new morpheus.FormBuilder,isColumns?_this.project.getColumnShapeModel():_this.project.getRowShapeModel()),chooser=new morpheus.ShapeChooser({map:shapeModel.getMap(_this.name)});chooser.on("change",function(event){shapeModel.setMappedValue(_this.getFullVector(),event.value,event.shape),_this.setInvalid(!0),_this.repaint()}),morpheus.FormBuilder.showInModal({title:"Edit Shapes",html:chooser.$div,close:"Close"})}else if("Edit Colors..."===item){var colorSchemeChooser,colorModel=isColumns?_this.project.getColumnColorModel():_this.project.getRowColorModel();_this.settings.discrete?(colorSchemeChooser=new morpheus.DiscreteColorSchemeChooser({colorScheme:{scale:colorModel.getDiscreteColorScheme(_this.getFullVector())}}),colorSchemeChooser.on("change",function(event){colorModel.setMappedValue(_this.getFullVector(),event.value,event.color),_this.setInvalid(!0),_this.repaint()})):(colorSchemeChooser=new morpheus.HeatMapColorSchemeChooser({showRelative:!1}),colorSchemeChooser.setColorScheme(colorModel.getContinuousColorScheme(_this.getFullVector())),colorSchemeChooser.on("change",function(event){_this.setInvalid(!0),_this.repaint()})),morpheus.FormBuilder.showInModal({title:"Edit Colors",html:colorSchemeChooser.$div,close:"Close",callback:function(){colorSchemeChooser.dispose()}})}else if(item===TOOLTIP)_this.settings.inlineTooltip=!_this.settings.inlineTooltip;else if(item===HIGHLIGHT_MATCHING_VALUES)_this.settings.highlightMatchingValues=!_this.settings.highlightMatchingValues;else if(customItem=_.find(customItems,function(customItem){return customItem.name===item&&customItem.columns===isColumns}))if(customItem.task){ +var task={tabId:_this.heatmap.getTabManager().getActiveTabId()};_this.heatmap.getTabManager().addTask(task),setTimeout(function(){try{customItem.callback(heatmap)}catch(x){}_this.heatmap.getTabManager().removeTask(task)},1)}else customItem.callback(heatmap);else if(item===DISPLAY_CONTINUOUS)_this.settings.discrete=!_this.settings.discrete,_this._setChartMinMax(),_this.setInvalid(!0),_this.repaint();else if(item===HIDE)heatmap.setTrackVisible(_this.name,!1,_this.isColumns),heatmap.revalidate();else if(item===HIDE_OTHERS){for(var names=heatmap.getVisibleTrackNames(_this.isColumns),i=0;icanvasSize&&(settings.colorBarSize=canvasSize>=5?canvasSize-1:canvasSize);var getColor;getColor=continuous?_.bind(colorModel.getContinuousMappedValue,colorModel):_.bind(colorModel.getMappedValue,colorModel);for(var i=start;end>i;i++){var value=vector.getValue(i),position=positions.getPosition(i),size=positions.getItemSize(i),color=getColor(vector,value);context.fillStyle=color,isColumns?(context.beginPath(),context.rect(position,offset-settings.colorBarSize,size,settings.colorBarSize),context.fill()):(context.beginPath(),context.rect(offset,position,settings.colorBarSize,size),context.fill())}},renderShape:function(context,vector,start,end,clip,offset){var isColumns=this.isColumns,positions=this.positions,shapeModel=isColumns?this.project.getColumnShapeModel():this.project.getRowShapeModel(),settings=this.settings,canvasSize=isColumns?this.getUnscaledHeight():this.getUnscaledWidth();settings.colorBarSize>canvasSize&&(settings.colorBarSize=canvasSize>=5?canvasSize-1:canvasSize),context.fillStyle="black",context.strokeStyle="black";var lineWidth=context.lineWidth;context.lineWidth=1;for(var i=start;end>i;i++){var value=vector.getValue(i),position=positions.getPosition(i),itemSize=positions.getItemSize(i),minSize=Math.min(settings.colorBarSize,itemSize),size2=minSize/2,shape=shapeModel.getMappedValue(vector,value),x=isColumns?position+itemSize/2:offset+size2,y=isColumns?offset-size2:position+itemSize/2;size2-=.5,morpheus.CanvasUtil.drawShape(context,shape,x,y,size2)}context.lineWidth=lineWidth},renderArc:function(context,vector,start,end,clip,size){var isColumns=this.isColumns,positions=this.positions;this.project;context.save(),context.lineWidth=1;var fill=(d3.scale.linear().domain([1,size]).range([.8,1]).clamp(!0),d3.scale.category20b()),valueToIndices=morpheus.VectorUtil.createValueToIndicesMap(vector),total=positions.getPosition(positions.getLength()-1)+positions.getItemSize(positions.getLength()-1);context.translate(clip.x,clip.y);var width=clip.width,height=clip.height;if(isColumns){var squishFactor=width/total;context.scale(squishFactor,1)}else{var squishFactor=height/total;context.scale(1,squishFactor)}start=0,end=vector.size();for(var i=start;end>i;i++){var value=vector.getValue(i);if(null!=value){context.strokeStyle=fill(value);for(var indices=valueToIndices.get(value),pix=positions.getPosition(i)+positions.getItemSize(i)/2,j=0,nindices=indices.length;nindices>j;j++){var viewIndex=indices[j];if(viewIndex!==i){var endPix=positions.getPosition(viewIndex)+positions.getItemSize(viewIndex)/2,midPix=(endPix+pix)/2,arcRadius=(Math.abs(i-viewIndex),size);isColumns?(context.beginPath(),context.moveTo(pix,arcRadius),context.quadraticCurveTo(midPix,1,endPix,arcRadius)):(context.beginPath(),context.moveTo(1,pix),context.quadraticCurveTo(arcRadius,midPix,1,endPix)),context.stroke()}}}}context.restore()},sdfToSvg:function(sdf,width,height){this.jsme||"undefined"==typeof JSApplet||(this.jsmeId=_.uniqueId("m"),this.$jsmeDiv=$('
      ').appendTo($(document.body)),this.jsme=new JSApplet.JSME(this.jsmeId,"380px","340px",{})),this.jsme.readMolFile(sdf);var svg=$("#"+this.jsmeId+" > div > div > div:nth-child(2) > svg"),svgWidth=svg.width.baseVal.value,svgHeight=svg.height.baseVal.value,scale=Math.min(width/svgWidth,height/svgHeight),text=''+svg.innerHTML+"";return text},renderMolecule:function(context,vector,start,end,clip,offset){var positions=(this.isColumns,this.positions);context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,context.strokeStyle="black";for(var width=this.getUnscaledWidth(),customUrlProvider=void 0!==this.heatmap.options.structureUrlProvider,dummyTarget={childNodes:[],getContext:function(){return context}},i=start;end>i;i++){var spanEnd=this.spanMap.get(i);if(void 0!==spanEnd){var startPix=positions.getPosition(i),endPix=positions.getPosition(spanEnd-1)+positions.getSize(),size=endPix-startPix,value=vector.getValue(i),cache=this.moleculeCache[value];if(cache)if(customUrlProvider){if(cache.complete){var scaleFactor=Math.min(size/cache.height,width/cache.width),scaledWidth=cache.width*scaleFactor,scaledHeight=cache.height*scaleFactor,diff=cache.height-scaledHeight;startPix+=diff/2;try{context.drawImage(cache,offset,startPix,scaledWidth,scaledHeight)}catch(x){}}}else{var text=this.sdfToSvg(cache,width,size);canvg(dummyTarget,text,{ignoreMouse:!0,ignoreAnimation:!0,offsetY:startPix,ignoreClear:!0,ignoreDimensions:!0})}}}},createChartScale:function(availableSpace){var domain,range;this.settings.mid!==this.settings.min&&this.settings.mid!==this.settings.max?(domain=[this.settings.min,this.settings.mid,this.settings.max],range=this.isColumns?[availableSpace,availableSpace/2,0]:[0,availableSpace/2,availableSpace]):(domain=[this.settings.min,this.settings.max],range=this.isColumns?[availableSpace,0]:[0,availableSpace]);var scale=d3.scale.linear().domain(domain).range(range).clamp(!0);return scale},renderBar:function(context,vector,start,end,clip,offset,availableSpace){var isColumns=this.isColumns,positions=this.positions;context.fillStyle=this.settings.barColor;for(var scale=this.createChartScale(availableSpace),midPix=scale(this.settings.mid),settings=this.settings,discrete=settings.discrete&&null!=this.discreteValueMap,i=start;end>i;i++){var value=vector.getValue(i);discrete&&(value=this.discreteValueMap.get(value));var position=positions.getPosition(i),size=positions.getItemSize(i),scaledValue=scale(value);isColumns?(context.beginPath(),context.rect(position,Math.min(midPix,scaledValue),size,Math.abs(midPix-scaledValue)),context.fill()):(context.beginPath(),context.rect(offset+Math.min(midPix,scaledValue),position,Math.abs(midPix-scaledValue),size),context.fill())}},renderBoxPlot:function(context,vector,start,end,clip,offset,availableSpace){var isColumns=this.isColumns,positions=this.positions;context.strokeStyle="black",context.save(),context.translate(offset,0);var scale=this.createChartScale(availableSpace),visibleFieldIndices=vector.getProperties().get(morpheus.VectorKeys.VISIBLE_FIELDS);null==visibleFieldIndices&&(visibleFieldIndices=morpheus.Util.seq(vector.getProperties().get(morpheus.VectorKeys.FIELDS).length));for(var colorByVector=null!=this.settings.colorByField?this.getVector(this.settings.colorByField):null,colorModel=isColumns?this.project.getColumnColorModel():this.project.getRowColorModel(),i=start;end>i;i++){var array=vector.getValue(i);if(null!=array){var itemSize=positions.getItemSize(i);if(3>=itemSize)continue;var radius=2,pix=positions.getPosition(i),start=pix+1,end=pix+itemSize-1,center=(start+end)/2,_itemSize=itemSize-2,lineHeight=Math.max(2,_itemSize-8),box=array.box;if(null==box){var v=morpheus.VectorUtil.arrayAsVector(array);box=morpheus.BoxPlotItem(null!=visibleFieldIndices?new morpheus.SlicedVector(v,visibleFieldIndices):v),array.box=box}if(context.fillStyle="#bdbdbd",!isColumns){context.fillRect(Math.min(scale(box.q1),scale(box.q3)),start,Math.abs(scale(box.q1)-scale(box.q3)),_itemSize),context.fillRect(Math.min(scale(box.q1),scale(box.lowerAdjacentValue)),center-lineHeight/2,Math.abs(scale(box.q1)-scale(box.lowerAdjacentValue)),lineHeight),context.fillRect(Math.min(scale(box.q3),scale(box.upperAdjacentValue)),center-lineHeight/2,Math.abs(scale(box.q3)-scale(box.upperAdjacentValue)),lineHeight),context.fillStyle="#636363";for(var j=0,length=visibleFieldIndices.length;length>j;j++){var value=array[visibleFieldIndices[j]];if(null!=value){if(null!=colorByVector){var colorByArray=colorByVector.getValue(i);if(null!=colorByArray){var color=colorModel.getMappedValue(colorByVector,colorByArray[visibleFieldIndices[j]]);context.fillStyle=color}else context.fillStyle="#636363"}var pix=scale(value);context.beginPath(),context.arc(pix,center,radius,2*Math.PI,!1),context.fill()}}}}}context.restore()},renderStackedBar:function(context,vector,start,end,clip,offset,availableSpace){var isColumns=this.isColumns,positions=this.positions,scale=this.createChartScale(availableSpace),midPix=scale(this.settings.mid),colorModel=(this.settings,isColumns?this.project.getColumnColorModel():this.project.getRowColorModel()),selectionModel=isColumns?this.project.getRowSelectionModel():null,selectedModelIndices=null==selectionModel?[]:selectionModel.toModelIndices();context.strokeStyle="black",context.lineWidth=2;for(var i=start;end>i;i++){var array=vector.getValue(i);if(null!=array){var selectedBins=new morpheus.Set;if(null!=array.modelIndexToBin)for(var j=0;jj;j++){var value=array[j];value>=this.settings.mid?positivePairs.push({value:value,index:j}):0>value&&negativePairs.push({value:value,index:j})}for(var positiveIndices=morpheus.Util.indexSortPairs(positivePairs,!1),j=0,length=positiveIndices.length;length>j;j++){var index=positiveIndices[j],value=array[index],color=colorModel.getMappedValue(vector,index);context.fillStyle=color;var scaledValue=scale(value),nextScaledValue=j===length-1?midPix:scale(array[positiveIndices[j+1]]);if(isColumns?(context.beginPath(),context.rect(position,Math.min(nextScaledValue,scaledValue),size,Math.abs(nextScaledValue-scaledValue)),context.fill()):(context.beginPath(),context.rect(offset+Math.min(nextScaledValue,scaledValue),position,Math.abs(nextScaledValue-scaledValue),size),context.fill()),selectedBins.has(index)){context.beginPath();var ytop=(nextScaledValue+scaledValue)/2;context.moveTo(position,ytop),context.lineTo(position+size,ytop),context.stroke()}}for(var negativeIndices=morpheus.Util.indexSortPairs(negativePairs,!0),j=0,length=negativeIndices.length;length>j;j++){var index=negativeIndices[j],value=array[index],color=colorModel.getMappedValue(vector,index);context.fillStyle=color;var scaledValue=scale(value),nextScaledValue=j===length-1?midPix:scale(array[negativeIndices[j+1]]);if(isColumns?(context.beginPath(),context.rect(position,Math.min(nextScaledValue,scaledValue),size,Math.abs(nextScaledValue-scaledValue)),context.fill()):(context.beginPath(),context.rect(offset+Math.min(nextScaledValue,scaledValue),position,Math.abs(nextScaledValue-scaledValue),size),context.fill()),selectedBins.has(index)){context.beginPath();var ytop=(nextScaledValue+scaledValue)/2;context.moveTo(position,ytop),context.lineTo(position+size,ytop),context.stroke()}}}}context.lineWidth=1},renderUnstackedBar:function(context,vector,start,end,clip,offset,availableSpace,fieldIndices){var isColumns=this.isColumns,positions=this.positions,nvalues=fieldIndices.length,colorModel=(this.settings,isColumns?this.project.getColumnColorModel():this.project.getRowColorModel());context.fillStyle=this.settings.barColor;var barSpacer=0,barWidth=(availableSpace-(nvalues-1)*barSpacer)/nvalues,colorByVector=null!=this.settings.colorByField?this.getVector(this.settings.colorByField):null;context.strokeStyle="white";for(var i=start;end>i;i++){var array=vector.getValue(i);if(null!=array)for(var position=positions.getPosition(i),itemSize=positions.getItemSize(i),scale=this.createChartScale(itemSize-1),midPix=scale(this.settings.mid),xpix=0,j=0;nvalues>j;j++){var value=array[fieldIndices[j]];if(null!=colorByVector){var colorByArray=colorByVector.getValue(i),color=colorModel.getMappedValue(colorByVector,null!=colorByArray?colorByArray[fieldIndices[j]]:null);context.fillStyle=color}var scaledValue=scale(value);if(isColumns)context.beginPath(),context.rect(Math.min(midPix,scaledValue),offset+xpix,Math.abs(midPix-scaledValue),barWidth),context.fill();else{context.beginPath();var barHeight=Math.abs(midPix-scaledValue),ypix=position+itemSize-Math.max(midPix,scaledValue);context.rect(offset+xpix,ypix,barWidth,barHeight),context.fill()}xpix+=barWidth+barSpacer}}},renderText:function(context,vector,isColor,start,end,clip,offset,canvasSize){context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,context.textBaseline="middle";var positions=this.positions,isColumns=this.isColumns,colorModel=isColumns?this.project.getColumnColorModel():this.project.getRowColorModel();isColumns&&context.translate(clip.x,clip.y);for(var toStringFunction=morpheus.VectorTrack.vectorToString(vector),i=start;end>i;i++){var size=this.positions.getItemSize(i);if(!(6>size)){var value=vector.getValue(i);if(null!=value){value=toStringFunction(value);var position=positions.getPosition(i);isColor&&(context.fillStyle=colorModel.getMappedValue(vector,value)),isColumns?(context.save(),context.translate(position+size/2-clip.x,canvasSize-clip.y-offset),context.rotate(-Math.PI/2),context.fillText(value,0,0),context.restore()):context.fillText(value,offset,position+size/2)}}}}},morpheus.Util.extend(morpheus.VectorTrack,morpheus.AbstractCanvas),morpheus.VectorTrackHeader=function(project,name,isColumns,controller){function getResizeCursor(pos){return isColumns&&pos.y>=_this.getUnscaledHeight()-3?"ns-resize":pos.x>=_this.getUnscaledWidth()-3?"ew-resize":void 0}morpheus.AbstractCanvas.call(this),this.project=project,this.name=name,this.isColumns=isColumns;var canvas=this.canvas;this.controller=controller;var vector=(isColumns?project.getFullDataset().getColumnMetadata():project.getFullDataset().getRowMetadata()).getByName(name);vector&&vector.getProperties().has(morpheus.VectorKeys.TITLE)&&(this.canvas.setAttribute("title",vector.getProperties().get(morpheus.VectorKeys.TITLE)),$(this.canvas).tooltip());var _this=this;this.setBounds({height:this.defaultFontHeight+morpheus.VectorTrackHeader.FONT_OFFSET});var mouseMove=function(event){if(!morpheus.CanvasUtil.dragging){var pos=morpheus.CanvasUtil.getMousePos(event.target,event),cursor=getResizeCursor(pos);canvas.style.cursor=cursor?cursor:"default",_this.isMouseOver=!0,_this.repaint()}},mouseExit=function(e){morpheus.CanvasUtil.dragging||(canvas.style.cursor="default"),_this.isMouseOver=!1,_this.repaint()},showPopup=function(e){controller.setSelectedTrack(_this.name,isColumns);var track=controller.getTrack(_this.name,isColumns);if(!track)throw _this.name+" track not found";return e.preventDefault(),e.stopPropagation&&e.stopPropagation(),e.stopImmediatePropagation&&e.stopImmediatePropagation(),track.showPopup(e,!0),!1};this.selectedBackgroundColor="#c8c8c8",this.backgroundColor="#f9f9f9",$(this.canvas).css("background-color",this.backgroundColor).on("mousemove.morpheus",mouseMove).on("mouseout.morpheus",mouseExit).on("mouseenter.morpheus",mouseMove),$(this.canvas).on("contextmenu.morpheus",showPopup);var resizeCursor,dragStartPosition,dragStartWidth=0,dragStartHeight=0,dragging=!1;this.hammer=morpheus.Util.hammer(canvas,["pan","tap","longpress"]).on("longpress",function(event){event.preventDefault(),controller.setSelectedTrack(_this.name,isColumns);var track=controller.getTrack(_this.name,isColumns);track.showPopup(event.srcEvent,!0)}).on("panend",function(event){_this.isMouseOver=!1,morpheus.CanvasUtil.dragging=!1,canvas.style.cursor="default";var index=controller.getTrackIndex(_this.name,isColumns),header=controller.getTrackHeaderByIndex(index,isColumns),track=controller.getTrackByIndex(index,isColumns),$canvas=$(track.canvas);$canvas.css("z-index","0"),$(header.canvas).css("z-index","0"),controller.revalidate()}).on("panstart",function(event){if(_this.isMouseOver=!1,!morpheus.CanvasUtil.dragging)if(resizeCursor=getResizeCursor(morpheus.CanvasUtil.getMousePos(event.target,event,!0)))morpheus.CanvasUtil.dragging=!0,canvas.style.cursor=resizeCursor,dragStartWidth=_this.getUnscaledWidth(),dragStartHeight=_this.getUnscaledHeight(),event.preventDefault(),dragging=!1;else{var index=controller.getTrackIndex(_this.name,isColumns);if(-1==index)throw _this.name+" not found";var header=controller.getTrackHeaderByIndex(index,isColumns),track=controller.getTrackByIndex(index,isColumns);controller.setSelectedTrack(_this.name,isColumns);var $canvas=$(track.canvas);dragStartPosition=$canvas.position(),$canvas.css("z-index","100"),$(header.canvas).css("z-index","100"),morpheus.CanvasUtil.dragging=!0,resizeCursor=void 0,dragging=!0}}).on("panmove",function(event){if(_this.isMouseOver=!1,resizeCursor){var width,height;if("ew-resize"===resizeCursor){var dx=event.deltaX;width=Math.max(8,dragStartWidth+dx)}if("ns-resize"===resizeCursor){var dy=event.deltaY;height=Math.max(8,dragStartHeight+dy)}controller.resizeTrack(_this.name,width,height,isColumns)}else if(dragging){var index=controller.getTrackIndex(_this.name,isColumns),header=controller.getTrackHeaderByIndex(index,isColumns),track=controller.getTrackByIndex(index,isColumns),ntracks=controller.getNumTracks(isColumns),delta=isColumns?event.deltaY:event.deltaX,newIndex=index+(delta>0?1:-1);newIndex=Math.min(Math.max(0,newIndex),ntracks-1);var prop=isColumns?"top":"left",w=isColumns?"getUnscaledHeight":"getUnscaledWidth",trackBounds={};trackBounds[prop]=dragStartPosition[prop]+delta,track.setBounds(trackBounds),header.setBounds(trackBounds);var dragOverTrack=controller.getTrackByIndex(newIndex,isColumns),dragOverWidth=dragOverTrack[w](),dragOverLeft=$(dragOverTrack.canvas).position()[prop],dragleft=dragStartPosition[prop]+delta,dragright=dragleft+track[w]();if((delta>0&&dragright>=dragOverLeft+dragOverWidth/2||0>delta&&dragOverLeft+dragOverWidth/2>=dragleft)&&index!==newIndex){controller.moveTrack(index,newIndex,isColumns);var otherHeader=controller.getTrackHeaderByIndex(index,isColumns),otherTrack=controller.getTrackByIndex(index,isColumns),$movedCanvas=$(otherTrack.canvas),newLeft=$movedCanvas.position()[prop];0>delta?newLeft+=track[w]():newLeft-=track[w]();var otherBounds={};otherBounds[prop]=newLeft,otherTrack.setBounds(otherBounds),otherHeader.setBounds(otherBounds)}}}).on("tap",function(event){if((!morpheus.Util.IS_MAC||!event.srcEvent.ctrlKey)&&(_this.isMouseOver=!1,controller.setSelectedTrack(_this.name,isColumns),(!isColumns||controller.options.columnsSortable)&&(isColumns||controller.options.rowsSortable))){var sortOrder,sortKey,additionalSort=event.srcEvent.shiftKey,isGroupBy=!1,existingSortKeyIndex=_this.getSortKeyIndexForColumnName(_this.getSortKeys(),_this.name);-1!=existingSortKeyIndex?(sortKey=_this.getSortKeys()[existingSortKeyIndex],sortOrder=sortKey.getSortOrder()===morpheus.SortKey.SortOrder.UNSORTED?morpheus.SortKey.SortOrder.ASCENDING:sortKey.getSortOrder()===morpheus.SortKey.SortOrder.ASCENDING?morpheus.SortKey.SortOrder.DESCENDING:morpheus.SortKey.SortOrder.UNSORTED):(sortKey=new morpheus.SortKey(_this.name,morpheus.SortKey.SortOrder.ASCENDING),sortOrder=morpheus.SortKey.SortOrder.ASCENDING),null!=sortKey&&(sortKey.setSortOrder(sortOrder),_this.setSortingStatus(_this.getSortKeys(),sortKey,additionalSort,isGroupBy))}})},morpheus.VectorTrackHeader.FONT_OFFSET=2,morpheus.VectorTrackHeader.prototype={selected:!1,isMouseOver:!1,defaultFontHeight:11,dispose:function(){morpheus.AbstractCanvas.prototype.dispose.call(this),$(this.canvas).off("contextmenu.morpheus mousemove.morpheus mouseout.morpheus mouseenter.morpheus"),this.hammer.destroy()},getPreferredSize:function(){var size=this.getPrintSize();return size.width+=22,this.isColumns||(size.height=this.defaultFontHeight+morpheus.VectorTrackHeader.FONT_OFFSET),size},getPrintSize:function(){var context=this.canvas.getContext("2d");context.font=this.defaultFontHeight+"px "+morpheus.CanvasUtil.FONT_NAME;var width=4+context.measureText(this.name).width;return{width:width,height:this.getUnscaledHeight()}},getSortKeys:function(){return this.isColumns?this.project.getColumnSortKeys():this.project.getRowSortKeys()},setOrder:function(sortKeys){this.isColumns?this.project.setColumnSortKeys(morpheus.SortKey.keepExistingSortKeys(sortKeys,this.project.getColumnSortKeys()),!1):this.project.setRowSortKeys(morpheus.SortKey.keepExistingSortKeys(sortKeys,this.project.getRowSortKeys()),!1)},setGroupBy:function(groupBy){for(var existingGroupBy=this.isColumns?this.project.groupColumns:this.project.groupRows,index=-1,i=0,length=existingGroupBy.length;length>i;i++)if(existingGroupBy[i].toString()===groupBy.toString()){index=i;break}var newGroupBy=[groupBy];-1!==index&&(newGroupBy=existingGroupBy,newGroupBy.splice(index,1)),this.isColumns?this.project.setGroupColumns(newGroupBy,!0):this.project.setGroupRows(newGroupBy,!0)},setSelected:function(selected){selected!=this.selected&&(this.selected=selected,$(this.canvas).css({"background-color":this.selected?this.selectedBackgroundColor:this.backgroundColor}))},setSortingStatus:function(sortKeys,sortKey,additionalSort,isGroupBy){if(!isGroupBy)if(sortKey.getSortOrder()!=morpheus.SortKey.SortOrder.UNSORTED||additionalSort){if(additionalSort&&0==sortKeys.length&&(additionalSort=!1),additionalSort){var sortKeyIndex=this.getSortKeyIndexForColumnName(sortKeys,sortKey.toString());-1===sortKeyIndex?sortKeys.push(sortKey):sortKeys[sortKeyIndex]=sortKey}else sortKeys=[sortKey];this.setOrder(sortKeys)}else this.setOrder([]);isGroupBy?this.setGroupBy(sortKey):this.isColumns?this.project.trigger("columnSortOrderChanged"):this.project.trigger("rowSortOrderChanged")},getSortKeyIndexForColumnName:function(sortKeys,columnName){if(null!=sortKeys)for(var i=0,size=sortKeys.length;size>i;i++)if(columnName===sortKeys[i].toString())return i;return-1},print:function(clip,context){clip.height<=6||(context.textBaseline="bottom",this.isColumns?(context.textAlign="right",context.font=Math.min(this.defaultFontHeight,clip.height-morpheus.VectorTrackHeader.FONT_OFFSET)+"px "+morpheus.CanvasUtil.FONT_NAME):(context.textAlign="left",context.font=clip.height-morpheus.VectorTrackHeader.FONT_OFFSET+"px "+morpheus.CanvasUtil.FONT_NAME),context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,context.fillText(this.name,0,0))},draw:function(clip,context){var sortKeys=this.getSortKeys(),name=this.name,existingSortKeyIndex=this.getSortKeyIndexForColumnName(sortKeys,name);if(morpheus.CanvasUtil.resetTransform(context),context.clearRect(0,0,this.getUnscaledWidth(),this.getUnscaledHeight()),!(this.getUnscaledHeight()<5)){this.isColumns?(context.beginPath(),context.moveTo(0,this.getUnscaledHeight()),context.lineTo(this.getUnscaledWidth(),this.getUnscaledHeight()),context.stroke(),context.textAlign="right"):(context.beginPath(),context.moveTo(this.getUnscaledWidth(),0),context.lineTo(this.getUnscaledWidth(),this.getUnscaledHeight()),context.stroke(),context.textAlign="left");var fontHeight=Math.min(this.defaultFontHeight,this.getUnscaledHeight()-morpheus.VectorTrackHeader.FONT_OFFSET),squished=this.controller.getTrack(this.name,this.isColumns).settings.squished;context.font=(squished?"Italic ":"")+fontHeight+"px "+morpheus.CanvasUtil.FONT_NAME;var textWidth=context.measureText(name).width,isColumns=this.isColumns,xpix=this.isColumns?this.getUnscaledWidth()-2:10;isColumns&&(-1!=existingSortKeyIndex&&(xpix-=6),sortKeys.length>1&&(xpix-=6));var ypix=this.isColumns?this.getUnscaledHeight()/2:this.getUnscaledHeight()-(this.defaultFontHeight+morpheus.VectorTrackHeader.FONT_OFFSET)/2;if(context.textBaseline="middle",this.isMouseOver){context.fillStyle="rgb(0,0,0)";for(var xdot=xpix-(isColumns?textWidth+4:4),ydot=ypix-3,i=0;2>i;i++)for(var j=0;3>j;j++)context.fillRect(xdot-3*i,ydot+3*j,1.5,1.5)}if(context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,context.fillText(name,xpix,ypix),context.fillStyle=morpheus.CanvasUtil.FONT_COLOR,-1!==existingSortKeyIndex){context.beginPath();var x=this.isColumns?xpix+4:xpix+textWidth+6,arrowHeight=Math.min(8,this.getUnscaledHeight()/2-1),arrowWidth=3;sortKeys[existingSortKeyIndex].getSortOrder()===morpheus.SortKey.SortOrder.ASCENDING?(context.translate(x,ypix-arrowHeight),context.moveTo(0,0),context.lineTo(arrowWidth,arrowHeight),context.lineTo(-arrowWidth,arrowHeight)):sortKeys[existingSortKeyIndex].getSortOrder()===morpheus.SortKey.SortOrder.DESCENDING?(context.translate(x,ypix),context.moveTo(0,arrowHeight),context.lineTo(arrowWidth,0),context.lineTo(-arrowWidth,0)):(context.translate(x,ypix-arrowHeight/2),context.moveTo(0,0),context.lineTo(arrowWidth,arrowHeight/2),context.lineTo(0,arrowHeight),context.lineTo(-arrowWidth,arrowHeight/2)),context.fill(),morpheus.CanvasUtil.resetTransform(context),sortKeys.length>1&&(context.textAlign="left",context.font="8px "+morpheus.CanvasUtil.FONT_NAME,context.fillText(""+(existingSortKeyIndex+1),x+4,ypix-3))}}}},morpheus.Util.extend(morpheus.VectorTrackHeader,morpheus.AbstractCanvas),morpheus.AverageLinkage=function(nelements,distmatrix){var j,n,clusterid,number,result;clusterid=[],number=[],result=[];for(var i=0;nelements-1>i;i++)result[i]={left:0,right:0,distance:0};for(j=0;nelements>j;j++)number[j]=1,clusterid[j]=j;var r={};for(n=nelements;n>1;n--){morpheus.HCluster.findClosestPair(n,distmatrix,r),result[nelements-n]={},result[nelements-n].distance=r.distance;var is=r.ip,js=r.jp;result[nelements-n].left=clusterid[is],result[nelements-n].right=clusterid[js];var sum=number[is]+number[js];for(j=0;js>j;j++)distmatrix[js][j]=distmatrix[is][j]*number[is]+distmatrix[js][j]*number[js],distmatrix[js][j]/=sum;for(j=js+1;is>j;j++)distmatrix[j][js]=distmatrix[is][j]*number[is]+distmatrix[j][js]*number[js],distmatrix[j][js]/=sum;for(j=is+1;n>j;j++)distmatrix[j][js]=distmatrix[j][is]*number[is]+distmatrix[j][js]*number[js],distmatrix[j][js]/=sum;for(j=0;is>j;j++)distmatrix[is][j]=distmatrix[n-1][j];for(j=is+1;n-1>j;j++)distmatrix[j][is]=distmatrix[n-1][j];number[js]=sum,number[is]=number[n-1],clusterid[js]=n-nelements-1,clusterid[is]=clusterid[n-1]}return result},morpheus.CollapseDataset=function(dataset,collapseToFields,summarizeFunction,shallowCopy){for(var vectors=[],i=0;iseries;series++)collapsedDataset.addSeries({name:dataset.getName(i),dataType:"Float32"});shallowCopy?collapsedDataset.setColumnMetadata(dataset.getColumnMetadata()):morpheus.MetadataUtil.copy(dataset.getColumnMetadata(),collapsedDataset.getColumnMetadata());for(var nfields=collapseToFields.length,collapseToVectors=[],i=0;nfields>i;i++)collapseToVectors.push(collapsedDataset.getRowMetadata().add(collapseToFields[i]));var counter=0;return idToIndices.forEach(function(rowIndices,key){for(var slice=morpheus.DatasetUtil.slicedView(dataset,rowIndices,null),view=new morpheus.DatasetColumnView(slice),series=0;nseries>series;series++){view.setSeriesIndex(series);for(var j=0,ncols=dataset.getColumnCount();ncols>j;j++)view.setIndex(j),collapsedDataset.setValue(counter,j,summarizeFunction(view),series)}for(var i=0;nfields>i;i++){var collapsedToVector=collapseToVectors[i],vector=vectors[i];collapsedToVector.setValue(counter,vector.getValue(rowIndices[0]))}counter++}),collapsedDataset},morpheus.CompleteLinkage=function(nelements,distmatrix){for(var j,n,clusterid=[],result=[],i=0;nelements-1>i;i++)result[i]={left:0,right:0,distance:0};for(j=0;nelements>j;j++)clusterid[j]=j;var r={};for(n=nelements;n>1;n--){morpheus.HCluster.findClosestPair(n,distmatrix,r),result[nelements-n].distance=r.distance;var is=r.ip,js=r.jp;for(j=0;js>j;j++)distmatrix[js][j]=Math.max(distmatrix[is][j],distmatrix[js][j]);for(j=js+1;is>j;j++)distmatrix[j][js]=Math.max(distmatrix[is][j],distmatrix[j][js]);for(j=is+1;n>j;j++)distmatrix[j][js]=Math.max(distmatrix[j][is],distmatrix[j][js]);for(j=0;is>j;j++)distmatrix[is][j]=distmatrix[n-1][j];for(j=is+1;n-1>j;j++)distmatrix[j][is]=distmatrix[n-1][j];result[nelements-n].left=clusterid[is],result[nelements-n].right=clusterid[js],clusterid[js]=n-nelements-1,clusterid[is]=clusterid[n-1]}return result},morpheus.HCluster=function(distmatrix,linkageAlgorithm){var nelements=distmatrix.length,nNodes=nelements-1;if(-1===nNodes){var root={id:0,height:0,index:0,minIndex:0,maxIndex:0,depth:0};return this.tree={maxHeight:0,rootNode:root,leafNodes:[],nLeafNodes:0},void(this.reorderedIndices=[0])}for(var tree=linkageAlgorithm(nelements,distmatrix),nodeorder=[],nodecounts=[],order=[],nodeID=[],i=0;nelements>i;i++)order[i]=i;for(var leftIds=[],rightIds=[],i=0;nNodes>i;i++){var order1,order2,counts1,counts2,ID1,ID2,min1=tree[i].left,min2=tree[i].right;if(nodeID[i]=nNodes+(i+2),0>min1){var index1=-min1-1;order1=nodeorder[index1],counts1=nodecounts[index1],ID1=nodeID[index1],tree[i].distance=Math.max(tree[i].distance,tree[index1].distance)}else order1=order[min1],counts1=1,ID1=min1;if(0>min2){var index2=-min2-1;order2=nodeorder[index2],counts2=nodecounts[index2],ID2=nodeID[index2],tree[i].distance=Math.max(tree[i].distance,tree[index2].distance)}else order2=order[min2],counts2=1,ID2=min2;leftIds[i]=ID1,rightIds[i]=ID2,nodecounts[i]=counts1+counts2,nodeorder[i]=(counts1*order1+counts2*order2)/(counts1+counts2)}for(var reorderedIndices=morpheus.HCluster.treeSort(nNodes,order,nodeorder,nodecounts,tree),idToIndex={},i=0,length=reorderedIndices.length;length>i;i++){var index=reorderedIndices[i];idToIndex[index]=i}for(var node,nodeIdToNode={},i=0,length=nodeID.length;length>i;i++){var id=nodeID[i],leftId=leftIds[i],lnode=nodeIdToNode[leftId];if(void 0===lnode){lnode={id:leftId};var index=idToIndex[leftId];lnode.index=index,lnode.minIndex=index,lnode.maxIndex=index,nodeIdToNode[lnode.id]=lnode}var rightId=rightIds[i],rnode=nodeIdToNode[rightId];if(void 0===rnode){rnode={id:rightId};var index=idToIndex[rightId];rnode.index=index,rnode.minIndex=index,rnode.maxIndex=index,nodeIdToNode[rnode.id]=rnode}node={id:id,children:[lnode,rnode],height:tree[i].distance,index:(rnode.index+lnode.index)/2},node.minIndex=Math.min(rnode.minIndex,lnode.minIndex),node.maxIndex=Math.max(rnode.maxIndex,lnode.maxIndex),lnode.parent=node,rnode.parent=node,nodeIdToNode[node.id]=node}this.reorderedIndices=reorderedIndices;for(var leafNodes=[],i=0,length=reorderedIndices.length;length>i;i++){var leaf=nodeIdToNode[reorderedIndices[i]];leaf.height=0, +leafNodes.push(leaf)}morpheus.AbstractDendrogram.setNodeDepths(node),this.tree={maxHeight:node.height,rootNode:node,leafNodes:leafNodes,nLeafNodes:leafNodes.length}},morpheus.HCluster.findClosestPair=function(n,distmatrix,r){var i,j,temp,distance=distmatrix[1][0],ip=1,jp=0;for(i=1;n>i;i++)for(j=0;i>j;j++)temp=distmatrix[i][j],distance>temp&&(distance=temp,ip=i,jp=j);r.distance=distance,r.ip=ip,r.jp=jp},morpheus.HCluster.computeDistanceMatrix=function(dataset,distanceFunction){for(var matrix=[],n=dataset.getRowCount(),i=1;n>i;i++)matrix[i]=new Float32Array(i);if(0===distanceFunction)for(var i=1;n>i;i++)for(var j=0;i>j;j++)matrix[i][j]=dataset.getValue(i,j);else if(1===distanceFunction)for(var i=1;n>i;i++)for(var j=0;i>j;j++)matrix[i][j]=1-dataset.getValue(i,j);else for(var list1=new morpheus.DatasetRowView(dataset),list2=new morpheus.DatasetRowView(dataset),i=1;n>i;i++){list1.setIndex(i);for(var j=0;i>j;j++)matrix[i][j]=distanceFunction(list1,list2.setIndex(j))}return matrix},morpheus.HCluster.treeSort=function(nNodes,order,nodeorder,nodecounts,tree){var i,nElements=nNodes+1,neworder=[],clusterids=[];for(i=0;nElements>i;i++)clusterids[i]=i,neworder[i]=0;for(i=0;nNodes>i;i++){var i1=tree[i].left,i2=tree[i].right,order1=0>i1?nodeorder[-i1-1]:order[i1],order2=0>i2?nodeorder[-i2-1]:order[i2],count1=0>i1?nodecounts[-i1-1]:1,count2=0>i2?nodecounts[-i2-1]:1;if(i2>i1){var j,increase=order2>order1?count1:count2;for(j=0;nElements>j;j++){var clusterid=clusterids[j];clusterid==i1&&order1>=order2&&(neworder[j]+=increase),clusterid==i2&&order2>order1&&(neworder[j]+=increase),clusterid!=i1&&clusterid!=i2||(clusterids[j]=-i-1)}}else{var j,increase=order2>=order1?count1:count2;for(j=0;nElements>j;j++){var clusterid=clusterids[j];clusterid==i1&&order1>order2&&(neworder[j]+=increase),clusterid==i2&&order2>=order1&&(neworder[j]+=increase),clusterid!=i1&&clusterid!=i2||(clusterids[j]=-i-1)}}}return morpheus.Util.indexSort(neworder,!0)},morpheus.HClusterGroupBy=function(dataset,groupByFieldNames,distanceFunction,linkageMethod){var vectors=(dataset.getRowMetadata(),morpheus.MetadataUtil.getVectors(dataset.getRowMetadata(),groupByFieldNames)),idToIndices=morpheus.VectorUtil.createValuesToIndicesMap(vectors),reorderedIndices=[],offset=0,root={id:-1,children:[],height:0},tree={maxHeight:0,rootNode:root,leafNodes:[],nLeafNodes:0};idToIndices.forEach(function(rowIndices,id){var hcl,originalIndicesForGroup=idToIndices.get(id),subset=morpheus.DatasetUtil.slicedView(dataset,originalIndicesForGroup,null),distanceMatrix=morpheus.HCluster.computeDistanceMatrix(subset,distanceFunction);hcl=new morpheus.HCluster(distanceMatrix,linkageMethod);for(var reorderedGroupIndices=hcl.reorderedIndices,i=0,rows=subset.getRowCount();rows>i;i++){var originalIndex=originalIndicesForGroup[reorderedGroupIndices[i]];reorderedIndices.push(originalIndex)}morpheus.AbstractDendrogram.dfs(hcl.tree.rootNode,function(node){return node.index+=offset,node.minIndex+=offset,node.maxIndex+=offset,node.id+=offset,!0}),0===hcl.tree.leafNodes.length?tree.leafNodes=tree.leafNodes.concat([hcl.tree.rootNode]):tree.leafNodes=tree.leafNodes.concat(hcl.tree.leafNodes),root.children.push(hcl.tree.rootNode),isNaN(hcl.tree.maxHeight)||(tree.maxHeight=Math.max(tree.maxHeight,hcl.tree.maxHeight)),offset+=subset.getRowCount()}),tree.nLeafNodes=tree.leafNodes.length,tree.rootNode.height=tree.maxHeight,this.tree=tree,this.reorderedIndices=reorderedIndices},morpheus.PermutationPValues=function(dataset,aIndices,bIndices,numPermutations,f){for(var numRows=dataset.getRowCount(),scores=new Float32Array(numRows),smoothPValues=!0,list1=new morpheus.DatasetRowView(new morpheus.SlicedDatasetView(dataset,null,aIndices)),list2=new morpheus.DatasetRowView(new morpheus.SlicedDatasetView(dataset,null,bIndices)),i=0;numRows>i;i++)scores[i]=f(list1.setIndex(i),list2.setIndex(i));dataset=new morpheus.SlicedDatasetView(dataset,null,aIndices.concat(bIndices));var rowSpecificPValues=new Float32Array(numRows),permuter=new morpheus.UnbalancedPermuter(aIndices.length,bIndices.length),permutationScore=new morpheus.TwoClassPermutationScore;permutationScore.init(dataset,f);for(var permutationIndex=0;numPermutations>permutationIndex;permutationIndex++){permutationScore.setPermutation(permuter.next());for(var i=0;numRows>i;i++){var permutedScore=permutationScore.getScore(i),score=scores[i];permutedScore>=score&&rowSpecificPValues[i]++}}for(var N=numPermutations,kArray=new Uint32Array(numRows),i=0;numRows>i;i++){var k=rowSpecificPValues[i];kArray[i]=k;var p;p=smoothPValues?(k+1)/(N+2):k/N;var oneMinusP=1-p;if(p>oneMinusP&&(p=oneMinusP),p*=2,0===p){for(var val=dataset.getValue(i,0),flat=!0,j=1,cols=dataset.getColumnCount();cols>j&♭j++)dataset.getValue(i,j)!=val&&(flat=!1);flat&&(p=1)}rowSpecificPValues[i]=p}this.rowSpecificPValues=rowSpecificPValues,this.k=kArray,this.fdr=morpheus.FDR_BH(rowSpecificPValues),this.scores=scores},morpheus.PermutationPValues.prototype={getBonferroni:function(index){return Math.min(this.rowSpecificPValues[index]*this.numRows,1)}},morpheus.UnbalancedPermuter=function(numClassZero,numClassOne){function getRandomIntInclusive(min,max){return Math.floor(Math.random()*(max-min+1))+min}for(var assignments=new Uint32Array(numClassZero+numClassOne),indices=new Uint32Array(numClassZero+numClassOne),i=0;i=1;i--){var j=getRandomIntInclusive(0,i),tmp=indices[j];indices[j]=indices[i],indices[i]=tmp}for(var i=0;n>i;i++)assignments[i]=0;for(var i=0;numClassOne>i;i++)assignments[indices[i]]=1;return assignments}},morpheus.TwoClassPermutationScore=function(){this.classZeroView=null,this.classOneView=null},morpheus.TwoClassPermutationScore.prototype={getScore:function(index){return this.classZeroView.setIndex(index),this.classOneView.setIndex(index),this.f(this.classZeroView,this.classOneView)},init:function(dataset,f){this.dataset=dataset,this.classZeroView=new morpheus.DatasetRowView(dataset),this.classOneView=new morpheus.DatasetRowView(dataset),this.f=f},setPermutation:function(permutedAssignments){for(var zeroIndices=[],oneIndices=[],i=0,length=permutedAssignments.length;length>i;i++)0===permutedAssignments[i]?zeroIndices.push(i):oneIndices.push(i);this.classZeroView.setDataset(new morpheus.SlicedDatasetView(this.dataset,null,zeroIndices)),this.classOneView.setDataset(new morpheus.SlicedDatasetView(this.dataset,null,oneIndices))}},morpheus.Ranking=function(values){for(var ranks=[],i=0,length=values.length;length>i;i++)ranks.push({value:values[i],position:i});if(0===ranks.length)return[];ranks.sort(function(a,b){return a.valueranks[i-1].value?(pos=i+1,tiesTrace.length>1&&morpheus.Ranking.fillAverage(out,tiesTrace),tiesTrace=[],tiesTrace.push(ranks[i].position)):tiesTrace.push(ranks[i].position),out[ranks[i].position]=pos;return tiesTrace.length>1&&morpheus.Ranking.fillAverage(out,tiesTrace),out},morpheus.Ranking.fill=function(data,tiesTrace,value){for(var i=0,length=tiesTrace.length;length>i;i++)data[tiesTrace[i]]=value},morpheus.Ranking.fillAverage=function(ranks,tiesTrace){var c=ranks[tiesTrace[0]],length=tiesTrace.length;morpheus.Ranking.fill(ranks,tiesTrace,(2*c+length-1)/2)},morpheus.SingleLinkage=function(nelements,distmatrix){var i,j,k,nnodes=nelements-1,temp=[],index=[],vector=[],result=[];for(i=0;nelements>i;i++)result[i]={left:0,right:0,distance:0};for(i=0;nnodes>i;i++)vector[i]=i;for(i=0;nelements>i;i++){for(result[i].distance=Number.MAX_VALUE,j=0;i>j;j++)temp[j]=distmatrix[i][j];for(j=0;i>j;j++)k=vector[j],result[j].distance>=temp[j]?(result[j].distancej;j++)result[j].distance>=result[vector[j]].distance&&(vector[j]=i)}for(i=0;nnodes>i;i++)result[i].left=i;for(result.sort(function(node1,node2){var term1=node1.distance,term2=node2.distance;return term2>term1?-1:term1>term2?1:0}),i=0;nelements>i;i++)index[i]=i;for(i=0;nnodes>i;i++)j=result[i].left,k=vector[j],result[i].left=index[j],result[i].right=index[k],index[k]=-i-1;var result2=[];for(i=0;nelements-1>i;i++)result2[i]=result[i];return result2}; \ No newline at end of file diff --git a/src/ui/vector_track.js b/src/ui/vector_track.js index 53bc20dc82977b1bb3ffd76b2abdd0515513b4bd..bdd62d05a61fd9497ffb18484653ce262e899826 100644 --- a/src/ui/vector_track.js +++ b/src/ui/vector_track.js @@ -826,6 +826,7 @@ morpheus.VectorTrack.prototype = { var DELETE = 'Delete...'; var TOOLTIP = 'Show In Tooltip'; var HIDE = 'Hide'; + var HIDE_OTHERS = 'Hide Others'; var REMOVE_SHOW_SELECTION_ONLY = 'Show All'; var SORT_ASC = 'Sort Ascending'; var SORT_DESC = 'Sort Descending'; @@ -1077,6 +1078,11 @@ morpheus.VectorTrack.prototype = { sectionToItems.Display.push({ name: HIDE }); + sectionToItems.Display.push({ + name: HIDE_OTHERS, + disabled: heatmap.getVisibleTrackNames(this.isColumns).length <= 1 + + }); sectionToItems.Display.push({ separator: true }); @@ -1703,6 +1709,17 @@ morpheus.VectorTrack.prototype = { heatmap.setTrackVisible(_this.name, false, _this.isColumns); heatmap.revalidate(); + } else if (item === HIDE_OTHERS) { + var names = heatmap.getVisibleTrackNames(_this.isColumns); + for (var i = 0; i < names.length; i++) { + if (names[i] !== _this.name) { + heatmap.setTrackVisible(names[i], false, + _this.isColumns); + } + } + + heatmap.revalidate(); + } else if (item === DISPLAY_STACKED_BAR) { _this.settings.stackedBar = !_this.settings.stackedBar; _this._update(); @@ -2306,4 +2323,4 @@ morpheus.VectorTrack.prototype = { } } }; -morpheus.Util.extend(morpheus.VectorTrack, morpheus.AbstractCanvas); \ No newline at end of file +morpheus.Util.extend(morpheus.VectorTrack, morpheus.AbstractCanvas);