diff --git a/src/io/tcga_util.js b/src/io/tcga_util.js index 13429141be4cce7cf4fed7d215f35d1ba9d68e26..75f0c1a6e1d055bc40201611b0d05a05e740a380 100644 --- a/src/io/tcga_util.js +++ b/src/io/tcga_util.js @@ -3,48 +3,49 @@ morpheus.TcgaUtil = function () { }; morpheus.TcgaUtil.DISEASE_STUDIES = { - 'LAML': 'Acute Myeloid Leukemia', - 'ACC': 'Adrenocortical carcinoma', - 'BLCA': 'Bladder Urothelial Carcinoma', - 'LGG': 'Brain Lower Grade Glioma', - 'BRCA': 'Breast invasive carcinoma', - 'CESC': 'Cervical squamous cell carcinoma and endocervical adenocarcinoma', - 'CHOL': 'Cholangiocarcinoma', - 'LCML': 'Chronic Myelogenous Leukemia', - 'COAD': 'Colon adenocarcinoma', - 'CNTL': 'Controls', - 'ESCA': 'Esophageal carcinoma ', - 'FPPP': 'FFPE Pilot Phase II', - 'GBM': 'Glioblastoma multiforme', - 'HNSC': 'Head and Neck squamous cell carcinoma', - 'KICH': 'Kidney Chromophobe', - 'KIRC': 'Kidney renal clear cell carcinoma', - 'KIRP': 'Kidney renal papillary cell carcinoma', - 'LIHC': 'Liver hepatocellular carcinoma', - 'LUAD': 'Lung adenocarcinoma', - 'LUSC': 'Lung squamous cell carcinoma', - 'DLBC': 'Lymphoid Neoplasm Diffuse Large B-cell Lymphoma', - 'MESO': 'Mesothelioma', - 'MISC': 'Miscellaneous', - 'OV': 'Ovarian serous cystadenocarcinoma', - 'PAAD': 'Pancreatic adenocarcinoma', - 'PCPG': 'Pheochromocytoma and Paraganglioma', - 'PRAD': 'Prostate adenocarcinoma', - 'READ': 'Rectum adenocarcinoma', - 'SARC': 'Sarcoma', - 'SKCM': 'Skin Cutaneous Melanoma', - 'STAD': 'Stomach adenocarcinoma', - 'TGCT': 'Testicular Germ Cell Tumors', - 'THYM': 'Thymoma', - 'THCA': 'Thyroid carcinoma', - 'UCS': 'Uterine Carcinosarcoma', - 'UCEC': 'Uterine Corpus Endometrial Carcinoma', - 'UVM': 'Uveal Melanoma', - 'KIPAN': 'Pan-Kidney Cohort', - 'COADREAD': 'Colonrectal adenocarcinoma', - 'GBMLGG': 'Glioma', - 'STES': 'Stomach and Esophageal Carcinoma' + "ACC": "Adrenocortical carcinoma", + "BLCA": "Bladder Urothelial Carcinoma", + "BRCA": "Breast invasive carcinoma", + "CESC": "Cervical squamous cell carcinoma and endocervical adenocarcinoma", + "CHOL": "Cholangiocarcinoma", +// "CNTL": "Controls", + "COAD": "Colon adenocarcinoma", + "COADREAD": "Colonrectal adenocarcinoma", + "DLBC": "Lymphoid Neoplasm Diffuse Large B-cell Lymphoma", + "ESCA": "Esophageal carcinoma ", +// "FPPP": "FFPE Pilot Phase II", + "GBM": "Glioblastoma multiforme", + "GBMLGG": "Glioma", + "HNSC": "Head and Neck squamous cell carcinoma", + "KICH": "Kidney Chromophobe", + "KIPAN": "Pan-Kidney Cohort", + "KIRC": "Kidney renal clear cell carcinoma", + "KIRP": "Kidney renal papillary cell carcinoma", + "LAML": "Acute Myeloid Leukemia", + "LCML": "Chronic Myelogenous Leukemia", + "LGG": "Brain Lower Grade Glioma", + "LIHC": "Liver hepatocellular carcinoma", + "LUAD": "Lung adenocarcinoma", + "LUSC": "Lung squamous cell carcinoma", + "MESO": "Mesothelioma", +// "MISC": "Miscellaneous", + "OV": "Ovarian serous cystadenocarcinoma", + "PAAD": "Pancreatic adenocarcinoma", + "PCPG": "Pheochromocytoma and Paraganglioma", + "PRAD": "Prostate adenocarcinoma", + "READ": "Rectum adenocarcinoma", + "SARC": "Sarcoma", + "SKCM": "Skin Cutaneous Melanoma", + "STAD": "Stomach adenocarcinoma", + "STES": "Stomach and Esophageal Carcinoma", + "TGCT": "Testicular Germ Cell Tumors", + "THCA": "Thyroid carcinoma", + "THYM": "Thymoma", + "UCEC": "Uterine Corpus Endometrial Carcinoma", + "UCS": "Uterine Carcinosarcoma", + "UVM": "Uveal Melanoma" }; + morpheus.TcgaUtil.SAMPLE_TYPES = { '01': 'Primary solid Tumor', '02': 'Recurrent Solid Tumor',