diff --git a/Gruntfile.apps.js b/Gruntfile.apps.js
deleted file mode 100644
index d52fcfeda7e055b636b29bb52db187caca3b2892..0000000000000000000000000000000000000000
--- a/Gruntfile.apps.js
+++ /dev/null
@@ -1,122 +0,0 @@
-/*global module:false*/
-module.exports = function(grunt) {
-	grunt
-			.initConfig({
-				pkg : grunt.file.readJSON('package.json'),
-				meta : {
-					banner : '/*! <%= pkg.title || pkg.name %> - v<%= pkg.version %> - '
-							+ '<%= grunt.template.today("yyyy-mm-dd") %>\n'
-							+ '<%= pkg.homepage ? "* " + pkg.homepage + "\n" : "" %>'
-							+ '* Copyright (c) <%= grunt.template.today("yyyy") %> <%= pkg.author.name %>; %> */'
-				},
-				's3-sync' : {
-					options : {
-						key : 'AKIAIJEUG7S3IGYDERQQ',
-						secret : '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',
-						bucket : 'appdata.cmap.org'
-					},
-					tcga : {
-						files : [ {
-							root : 'U:/users/jgould/tcga_current/test',
-							src : [ 'U:/users/jgould/tcga_current/test/**' ],
-							dest : 'morpheus/tcga/',
-							gzip : true,
-							compressionLevel : 9
-						} ]
-					}
-				},
-				uglify : {
-					extApps : {
-						options : {
-							mangle : false
-						},
-						files : {
-							'js/morpheus.external.apps.min.js' : [ 'js/morpheus.external.apps.js' ]
-						}
-					}
-				},
-				cssmin : {
-					apps : {
-						src : 'css/morpheus.external.apps.css',
-						dest : 'css/morpheus.external.apps.min.css'
-					}
-				},
-				concat : {
-					extCss : {
-						src : [ 'css/jquery-ui.min.css',
-								'css/font-awesome.min.css',
-								'css/hopscotch.min.css', 'css/slick.grid.css' ],
-						dest : 'css/morpheus.external.apps.css'
-					},
-					extJs : {
-						nonull : true,
-						dest : 'js/morpheus.external.apps.js',
-						src : [ 'js/newick.js', 'js/hammer.min.js',
-								'js/jquery.mousewheel.min.js',
-								'js/bootstrap-select.min.js',
-								'js/xlsx.full.min.js', 'js/canvas2svg.js',
-								'js/canvg.js', 'js/rgbcolor.js',
-								'js/jquery-ui.min.js', 'js/parser.js',
-								'js/FileSaver.min.js', 'js/Blob.js',
-								'js/canvas-toBlob.js', 'js/colorbrewer.js',
-								'js/hopscotch.min.js', 'js/typed.min.js',
-								'js/jquery.event.drag-2.2.js',
-								'js/slick.min.js', 'js/quadtree.min.js',
-								'js/clipboard.min.js', 'js/d3.min.js',
-								'js/d3.layout.cloud.js' ]
-					},
-					morpheus : {
-						nonull : true,
-						dest : 'js/morpheus.js',
-						src : [ 'src/util/util.js', 'src/util/*.js',
-								'src/io/*.js', 'src/matrix/vector_adapter.js',
-								'src/table/list.js', 'src/matrix/*.js',
-								'src/*.js', 'src/tools/*.js', 'src/ui/*.js',
-								'src/**/*.js' ]
-					}
-				},
-				watch : {
-					files : [ 'src/*.js', 'src/**/*.js' ],
-					tasks : [ 'concat:morpheus', 'copy:apps' ]
-				},
-				copy : {
-					apps : {
-						src : 'js/morpheus.js',
-						dest : '../kafejo/public/lib/js/morpheus.js'
-					},
-					appsMin : {
-						src : 'js/morpheus.min.js',
-						dest : '../kafejo/public/lib/js/morpheus.min.js'
-					},
-					morpheus : {
-						files : [ {
-							src : [ 'css/**' ],
-							dest : '../kafejo/public/morpheus/',
-						}, {
-
-							src : [ 'fonts/**' ],
-							dest : '../kafejo/public/morpheus/',
-						}, {
-							src : [ 'js/**' ],
-							dest : '../kafejo/public/morpheus/',
-						}, {
-							src : [ '*.html' ],
-							dest : '../kafejo/public/morpheus/',
-						}, {
-							src : [ 'images/**' ],
-							dest : '../kafejo/public/morpheus/',
-						} ]
-
-					}
-				}
-			});
-	// Default task.
-	grunt.registerTask('default', 'copy');
-	grunt.loadNpmTasks('grunt-contrib-watch');
-	grunt.loadNpmTasks('grunt-contrib-concat');
-	grunt.loadNpmTasks('grunt-contrib-uglify');
-	grunt.loadNpmTasks('grunt-contrib-copy');
-	grunt.loadNpmTasks('grunt-contrib-cssmin');
-	grunt.loadNpmTasks('grunt-contrib-jshint');
-	grunt.loadNpmTasks('grunt-s3-sync');
-};