');
searchHtml.push('
');
searchHtml.push('
');
searchHtml.push('');
searchHtml
.push('');
searchHtml
.push('');
searchHtml
.push('');
searchHtml
.push('');
searchHtml.push('');
searchHtml.push('
');
}
if (controller.options.toolbar.searchColumns) {
searchHtml
.push('
'); // spacer
// search columns
searchHtml.push('
');
searchHtml.push('
');
searchHtml
.push('
');
searchHtml.push('');
searchHtml
.push('');
searchHtml
.push('');
searchHtml
.push('');
searchHtml.push('');
searchHtml.push('');
}
// search values
searchHtml
.push('
');
searchHtml.push('
');
searchHtml
.push('
');
searchHtml.push('');
// row dendrogram
searchHtml
.push('
');
// column dendrogram
searchHtml
.push('
');
// dimensions
searchHtml.push('
');
searchHtml
.push('
');
searchHtml
.push('');
searchHtml.push('');
searchHtml.push('
');
$(searchHtml.join('')).appendTo($search);
if (!controller.options.toolbar.searchValues) {
$search.find('[name=searchValuesDiv]').css('display', 'none');
}
if (controller.options.tour) {
var $tour = $('
');
$tour.prependTo($search.find('[name=right]'));
$tour.on('click', function(e) {
e.preventDefault();
controller.options.tour(controller);
});
}
if (controller.options.$help) {
controller.options.$help.appendTo($search.find('[name=right]'));
}
var $tools = $('
');
$tools.on('submit', function(e) {
e.preventDefault();
});
var $toolbarForm = $('
');
$toolbarForm.on('submit', function(e) {
e.preventDefault();
});
var toolbarHtml = [];
// zoom
if (controller.options.toolbar.zoom) {
toolbarHtml.push('
');
toolbarHtml
.push('
');
toolbarHtml
.push('
');
toolbarHtml
.push('
');
toolbarHtml
.push('
');
}
toolbarHtml.push('
');
if (controller.options.toolbar.sort) {
toolbarHtml
.push('
');
}
if (controller.options.toolbar.options) {
toolbarHtml
.push('
');
}
toolbarHtml.push('
');
if (controller.options.toolbar.saveImage) {
toolbarHtml
.push('
');
}
if (controller.options.toolbar.saveDataset) {
toolbarHtml
.push('
');
}
if (controller.options.toolbar.openFile) {
toolbarHtml
.push('
');
}
toolbarHtml.push('
');
if (controller.options.toolbar.filter) {
toolbarHtml
.push('
');
}
if (typeof Plotly !== 'undefined') {
toolbarHtml
.push('
');
}
var tools = [ {
tool : new morpheus.HClusterTool()
}, {
tool : new morpheus.MarkerSelection()
}, {
tool : new morpheus.NearestNeighbors()
}, {
tool : new morpheus.NewHeatMapTool(),
}, null, {
tool : new morpheus.AdjustDataTool()
}, {
tool : new morpheus.CollapseDatasetTool()
}, {
tool : new morpheus.CreateAnnotation()
}, {
tool : new morpheus.SimilarityMatrixTool()
}, {
tool : new morpheus.TransposeTool()
}, {
tool : new morpheus.WordCloudTool()
} ]; // DevAPI, {
this.getToolByName = function(name) {
for (var i = 0; i < tools.length; i++) {
if (tools[i] && tools[i].tool.toString
&& tools[i].tool.toString() === name) {
return tools[i].tool;
}
}
throw name + ' not found';
};
if (controller.options.toolbar.tools) {
toolbarHtml.push('
');
toolbarHtml
.push('');
toolbarHtml.push('
');
}
toolbarHtml.push('
');
// legend
if (controller.options.toolbar.colorKey) {
toolbarHtml.push('
');
toolbarHtml
.push('');
toolbarHtml.push('');
toolbarHtml.push('
');
}
toolbarHtml
.push('
');
toolbarHtml.push('
');
$search.appendTo($el.find('[name=toolbarSearch]'));
$(toolbarHtml.join('')).appendTo($toolbarForm);
$toolbarForm.appendTo($el.find('[name=toolbarButtons]'));
$el.prependTo(controller.$content);
// gapi.hangout.render('hangout-div', {
// 'widget_size' : '72',
// 'render' : 'createhangout'
// });
var $tools = $el.find('[name=tools]');
this.$tip = $el.find('[name=tip]');
$tools.on('click', 'li > a', function(e) {
e.preventDefault();
var index = parseInt($(this).attr('name'));
if (tools[index].tool) {
morpheus.HeatMap.showTool(tools[index].tool, controller);
} else {
tools[index].action();
}
});
this.defaultRowMatchMode = 'contains';
this.defaultColumnMatchMode = 'contains';
var $rowSearchOptions = $el.find('[name=rowSearchOptions]');
$rowSearchOptions.on('click', 'li > a', function(e) {
e.preventDefault();
_this.defaultRowMatchMode = $(this).attr('name');
$rowSearchOptions.find('li').removeClass('active');
$(this).parent('li').addClass('active');
_this.search(true);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'rowSearchMatchMode'
});
});
var $columnSearchOptions = $el.find('[name=columnSearchOptions]');
$columnSearchOptions.on('click', 'li > a', function(e) {
e.preventDefault();
_this.defaultColumnMatchMode = $(this).attr('name');
$columnSearchOptions.find('li').removeClass('active');
$(this).parent('li').addClass('active');
_this.search(false);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'columnSearchMatchMode'
});
});
var filterModal = [];
var filterLabelId = _.uniqueId('morpheus');
filterModal
.push('
');
filterModal.push('
');
filterModal.push('
');
filterModal.push('');
filterModal.push('
');
filterModal.push('');
filterModal.push('
');
filterModal.push('
');
filterModal.push('
');
filterModal.push('
');
var $filterModal = $(filterModal.join(''));
$filterModal.on('mousewheel', function(e) {
e.stopPropagation();
});
var $filter = $('
');
$filter.appendTo($filterModal.find('.modal-body'));
$filterModal.appendTo($el);
var filterHtml = [];
filterHtml
.push('
');
filterHtml
.push('
');
var $filterChooser = $(filterHtml.join(''));
$filterChooser.appendTo($filter);
var columnFilterUI = new morpheus.FilterUI(controller.getProject(), true);
var rowFilterUI = new morpheus.FilterUI(controller.getProject(), false);
controller.getProject().getRowFilter().on('focus', function(e) {
$filterChooser.find('[value=rows]').prop('checked', true);
columnFilterUI.$div.hide();
rowFilterUI.$div.show();
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'rowFilter'
});
});
controller.getProject().getColumnFilter().on('focus', function(e) {
$filterChooser.find('[value=columns]').prop('checked', true);
columnFilterUI.$div.show();
rowFilterUI.$div.hide();
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'columnFilter'
});
});
rowFilterUI.$div.appendTo($filter);
columnFilterUI.$div.appendTo($filter);
columnFilterUI.$div.css('display', 'none');
var $filterRadio = $filterChooser.find('[name=rowsOrColumns]');
$filterRadio.on('change', function(e) {
var val = $filterRadio.filter(':checked').val();
if (val === 'columns') {
columnFilterUI.$div.show();
rowFilterUI.$div.hide();
} else {
columnFilterUI.$div.hide();
rowFilterUI.$div.show();
}
e.preventDefault();
});
$el.find('[name=filterButton]').on('click', function() {
$filterModal.modal('show');
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'filter'
});
});
$el.find('[data-toggle="tooltip"]').tooltip({
placement : 'bottom',
container : 'body',
trigger : 'hover'
}).on('click', function() {
$(this).tooltip('hide');
});
var $key = $el.find('[name=key]');
var $keyContent = $el.find('[name=keyContent]');
$key.dropdown().parent().on('show.bs.dropdown', function() {
new morpheus.HeatMapColorSchemeLegend(controller, $keyContent);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'colorKey'
});
});
$el.find('[name=openFile]').on('click', function() {
morpheus.HeatMap.showTool(new morpheus.OpenFileTool({
customUrls : controller._customUrls
}), controller);
});
$el.find('[name=saveImage]').on('click', function() {
morpheus.HeatMap.showTool(new morpheus.SaveImageTool(), controller);
});
$el.find('[name=saveDataset]').on('click', function() {
morpheus.HeatMap.showTool(new morpheus.SaveDatasetTool(), controller);
});
$el.find('[name=chart]').on(
'click',
function() {
new morpheus.ChartTool2({
project : controller.getProject(),
getVisibleTrackNames : _.bind(
controller.getVisibleTrackNames, controller)
});
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'chart'
});
});
var _this = this;
$el
.find('[name=tutorial]')
.on(
'click',
function() {
window
.open('http://www.broadinstitute.org/cancer/software/morpheus/tutorial.html');
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'tutorial'
});
});
this.$previousColumnMatch = $el.find('[name=previousColumnMatch]');
this.$nextColumnMatch = $el.find('[name=nextColumnMatch]');
this.$previousRowMatch = $el.find('[name=previousRowMatch]');
this.$nextRowMatch = $el.find('[name=nextRowMatch]');
this.$dimensionsLabel = $el.find('[name=dim]');
this.$columnTextField = $el.find('[name=searchColumns]');
this.$valueTextField = $el.find('[name=searchValues]');
this.$selectionLabel = $el.find('[name=selection]');
this.$rowTextField = $el.find('[name=searchRows]');
this.$columnMatchesToTop = $el.find('[name=columnMatchesToTop]');
this.$rowMatchesToTop = $el.find('[name=rowMatchesToTop]');
this.$rowSearchDiv = $el.find('[name=rowSearchDiv]');
this.$columnSearchDiv = $el.find('[name=columnSearchDiv]');
this.$searchRowDendrogramWrapper = $el
.find('[name=searchRowDendrogramWrapper]');
this.$searchRowDendrogram = $el.find('[name=searchRowDendrogram]');
this.$searchResultsRowDendrogram = $el
.find('[name=searchResultsRowDendrogram]');
this.$searchColumnDendrogramWrapper = $el
.find('[name=searchColumnDendrogramWrapper]');
this.$searchColumnDendrogram = $el.find('[name=searchColumnDendrogram]');
this.$searchResultsColumnDendrogram = $el
.find('[name=searchResultsColumnDendrogram]');
controller.on('dendrogramAnnotated', function(e) {
(e.isColumns ? _this.$searchColumnDendrogramWrapper
: _this.$searchRowDendrogramWrapper).show();
});
controller.on('dendrogramChanged', function(e) {
(e.isColumns ? _this.$searchColumnDendrogramWrapper
: _this.$searchRowDendrogramWrapper).hide();
});
var project = controller.getProject();
morpheus.Util.autosuggest({
$el : this.$rowTextField,
filter : function(terms, cb) {
var indices = [];
var meta = project.getSortedFilteredDataset().getRowMetadata();
controller.getVisibleTrackNames(false).forEach(function(name) {
indices.push(morpheus.MetadataUtil.indexOf(meta, name));
});
meta = new morpheus.MetadataModelColumnView(meta, indices);
morpheus.MetadataUtil.autocomplete(meta)(terms, cb);
},
select : function() {
_this.search(true);
}
});
this.$rowTextField.on('keyup', _.debounce(function(e) {
if (e.which === 13) {
e.preventDefault();
}
_this.search(true);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'searchRows'
});
}, 500));
morpheus.Util.autosuggest({
$el : this.$columnTextField,
filter : function(terms, cb) {
var indices = [];
var meta = project.getSortedFilteredDataset().getColumnMetadata();
controller.getVisibleTrackNames(true).forEach(function(name) {
indices.push(morpheus.MetadataUtil.indexOf(meta, name));
});
meta = new morpheus.MetadataModelColumnView(meta, indices);
morpheus.MetadataUtil.autocomplete(meta)(terms, cb);
},
select : function() {
_this.search(false);
}
});
this.$columnTextField.on('keyup', _.debounce(function(e) {
if (e.which === 13) {
e.preventDefault();
}
_this.search(false);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'searchColumns'
});
}, 500));
// TODO combine search with autocomplete
this.$searchRowDendrogram.on('keyup', _.debounce(function(e) {
if (e.which === 13) {
// _this.$searchRowDendrogram.autocomplete('close');
e.preventDefault();
}
_this.searchDendrogram(false);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'searchRowDendrogram'
});
}, 500));
this.$searchColumnDendrogram.on('keyup', _.debounce(function(e) {
if (e.which === 13) {
// _this.$searchColumnDendrogram.autocomplete('close');
e.preventDefault();
}
_this.searchDendrogram(true);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'searchColumnDendrogram'
});
}, 500));
function searchValues() {
var $searchResultsLabel = _this.$el.find('[name=searchResultsValues]');
var text = $.trim(_this.$valueTextField.val());
if (text === '') {
$searchResultsLabel.html('');
project.getElementSelectionModel().setViewIndices(null);
} else {
var viewIndices = new morpheus.Set();
morpheus.DatasetUtil.searchValues(project
.getSortedFilteredDataset(), text, function(value, i, j) {
viewIndices.add(new morpheus.Identifier([ i, j ]));
});
project.getElementSelectionModel().setViewIndices(viewIndices);
$searchResultsLabel.html(viewIndices.size() + ' match'
+ (viewIndices.size() === 1 ? '' : 'es'));
}
}
morpheus.Util.autosuggest({
$el : this.$valueTextField,
filter : function(terms, cb) {
morpheus.DatasetUtil.autocompleteValues(
project.getSortedFilteredDataset())(terms, cb);
},
select : function() {
searchValues();
}
});
this.$valueTextField.on('keyup', _.debounce(function(e) {
if (e.which === 13) {
_this.$valueTextField.autocomplete('close');
e.preventDefault();
}
searchValues();
}, 500));
$toolbarForm.on('submit', function(e) {
e.preventDefault();
});
$toolbarForm.on('click', '[name=in]', function(e) {
e.preventDefault();
controller.zoom(true);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'zoomIn'
});
});
$toolbarForm.on('click', '[name=out]', function(e) {
e.preventDefault();
controller.zoom(false);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'zoomOut'
});
});
$toolbarForm.on('click', '[name=options]', function(e) {
e.preventDefault();
controller.showOptions();
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'options'
});
});
$toolbarForm.on('click', '[name=sort]', function(e) {
e.preventDefault();
new morpheus.SortDialog(project);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'sort'
});
});
$toolbarForm.on('click', '[name=fit]', function(e) {
e.preventDefault();
controller.fitToWindow(true);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'fit'
});
});
$toolbarForm.on('click', '[name=resetZoom]', function(e) {
e.preventDefault();
controller.resetZoom();
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'resetZoom'
});
});
this.$el = $el;
var updateFilterStatus = function() {
if (controller.getProject().getRowFilter().isEnabled()
|| controller.getProject().getColumnFilter().isEnabled()) {
_this.$el.find('[name=filterButton]').addClass('btn-primary');
} else {
_this.$el.find('[name=filterButton]').removeClass('btn-primary');
}
};
updateFilterStatus();
this.$columnMatchesToTop
.on(
'click',
function(e) {
e.preventDefault();
var $this = $(this);
$this.toggleClass('btn-primary');
var sortKeys = project.getColumnSortKeys();
// clear existing sort keys except dendrogram
sortKeys = sortKeys
.filter(function(key) {
return (key instanceof morpheus.SpecifiedModelSortOrder && key.name === 'dendrogram');
});
if ($this.hasClass('btn-primary')) {
var key = new morpheus.MatchesOnTopSortKey(project,
_this.columnSearchResultModelIndices,
'matches on top');
sortKeys.splice(0, 0, key);
controller.scrollLeft(0);
}
_this.searching = true;
project.setColumnSortKeys(sortKeys, true);
_this._updateSearchIndices(true);
_this.searching = false;
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'columnMatchesToTop'
});
});
this.$rowMatchesToTop
.on(
'click',
function(e) {
e.preventDefault();
var $this = $(this);
$this.toggleClass('btn-primary');
var sortKeys = project.getRowSortKeys();
// clear existing sort keys except
// dendrogram
sortKeys = sortKeys
.filter(function(key) {
return (key instanceof morpheus.SpecifiedModelSortOrder && key.name === 'dendrogram');
});
if ($this.hasClass('btn-primary')) {
var key = new morpheus.MatchesOnTopSortKey(project,
_this.rowSearchResultModelIndices,
'matches on top');
sortKeys.splice(0, 0, key);
controller.scrollTop(0);
}
_this.searching = true;
project.setRowSortKeys(sortKeys, true);
_this._updateSearchIndices(false);
_this.searching = false;
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'rowMatchesToTop'
});
});
project.on('rowSortOrderChanged.morpheus', function(e) {
if (_this.searching) {
return;
}
_this._updateSearchIndices(false);
_this.$rowMatchesToTop.removeClass('btn-primary');
});
project.on('columnSortOrderChanged.morpheus', function(e) {
if (_this.searching) {
return;
}
_this._updateSearchIndices(true);
_this.$columnMatchesToTop.removeClass('btn-primary');
});
controller.getProject().on('rowFilterChanged.morpheus', function(e) {
_this.search(true);
updateFilterStatus();
});
controller.getProject().on('columnFilterChanged.morpheus', function(e) {
_this.search(false);
updateFilterStatus();
});
controller.getProject().on('datasetChanged.morpheus', function() {
_this.search(true);
_this.search(false);
updateFilterStatus();
});
controller.getProject().getRowSelectionModel().on(
'selectionChanged.morpheus', function() {
_this.updateSelectionLabel();
});
controller.getProject().getColumnSelectionModel().on(
'selectionChanged.morpheus', function() {
_this.updateSelectionLabel();
});
this.rowSearchResultViewIndicesSorted = null;
this.currentRowSearchIndex = 0;
this.columnSearchResultViewIndicesSorted = null;
this.currentColumnSearchIndex = -1;
this.$previousColumnMatch
.on(
'click',
function() {
_this.currentColumnSearchIndex--;
if (_this.currentColumnSearchIndex < 0) {
_this.currentColumnSearchIndex = _this.columnSearchResultViewIndicesSorted.length - 1;
}
controller
.scrollLeft(controller
.getHeatMapElementComponent()
.getColumnPositions()
.getPosition(
_this.columnSearchResultViewIndicesSorted[_this.currentColumnSearchIndex]));
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'previousColumnMatch'
});
});
this.$previousRowMatch
.on(
'click',
function() {
_this.currentRowSearchIndex--;
if (_this.currentRowSearchIndex < 0) {
_this.currentRowSearchIndex = _this.rowSearchResultViewIndicesSorted.length - 1;
}
controller
.scrollTop(controller
.getHeatMapElementComponent()
.getRowPositions()
.getPosition(
_this.rowSearchResultViewIndicesSorted[_this.currentRowSearchIndex]));
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'previousRowMatch'
});
});
this.$nextColumnMatch.on('click', function() {
_this.next(true);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'nextColumnMatch'
});
});
this.$nextRowMatch.on('click', function() {
_this.next(false);
morpheus.Util.trackEvent({
eventCategory : 'ToolBar',
eventAction : 'nextRowMatch'
});
});
this.updateDimensionsLabel();
this.updateSelectionLabel();
};
morpheus.HeatMapToolBar.HIGHLIGHT_SEARCH_MODE = 0;
morpheus.HeatMapToolBar.FILTER_SEARCH_MODE = 1;
morpheus.HeatMapToolBar.MATCHES_TO_TOP_SEARCH_MODE = 2;
morpheus.HeatMapToolBar.SELECT_MATCHES_SEARCH_MODE = 3;
morpheus.HeatMapToolBar.prototype = {
quickColumnFilter : false,
searching : false,
rowSearchMode : morpheus.HeatMapToolBar.SELECT_MATCHES_SEARCH_MODE,
columnSearchMode : morpheus.HeatMapToolBar.SELECT_MATCHES_SEARCH_MODE,
_updateSearchIndices : function(isColumns) {
var project = this.controller.getProject();
if (isColumns) {
var viewIndices = [];
var modelIndices = this.columnSearchResultModelIndices;
for (var i = 0, length = modelIndices.length; i < length; i++) {
var index = project
.convertModelColumnIndexToView(modelIndices[i]);
if (index !== -1) {
viewIndices.push(index);
}
}
viewIndices.sort(function(a, b) {
return a < b ? -1 : 1;
});
this.columnSearchResultViewIndicesSorted = viewIndices;
this.currentColumnSearchIndex = -1;
} else {
var viewIndices = [];
var modelIndices = this.rowSearchResultModelIndices;
for (var i = 0, length = modelIndices.length; i < length; i++) {
var index = project.convertModelRowIndexToView(modelIndices[i]);
if (index !== -1) {
viewIndices.push(index);
}
}
viewIndices.sort(function(a, b) {
return a < b ? -1 : 1;
});
this.rowSearchResultViewIndicesSorted = viewIndices;
this.currentRowSearchIndex = -1;
}
},
next : function(isColumns) {
var controller = this.controller;
if (isColumns) {
this.currentColumnSearchIndex++;
if (this.currentColumnSearchIndex >= this.columnSearchResultViewIndicesSorted.length) {
this.currentColumnSearchIndex = 0;
}
controller
.scrollLeft(controller
.getHeatMapElementComponent()
.getColumnPositions()
.getPosition(
this.columnSearchResultViewIndicesSorted[this.currentColumnSearchIndex]));
} else {
this.currentRowSearchIndex++;
if (this.currentRowSearchIndex >= this.rowSearchResultViewIndicesSorted.length) {
this.currentRowSearchIndex = 0;
}
controller
.scrollTop(controller
.getHeatMapElementComponent()
.getRowPositions()
.getPosition(
this.rowSearchResultViewIndicesSorted[this.currentRowSearchIndex]));
}
},
setSearchText : function(options) {
var $tf = options.isColumns ? this.$columnTextField
: this.$rowTextField;
var existing = options.append ? $.trim($tf.val()) : '';
if (existing !== '') {
existing += ' ';
}
if (options.onTop) {
options.isColumns ? this.$columnMatchesToTop
.addClass('btn-primary') : this.$rowMatchesToTop
.addClass('btn-primary');
}
$tf.val(existing + options.text);
this.search(!options.isColumns);
if (options.scrollTo) {
this.next(options.isColumns);
// click next
}
},
updateDimensionsLabel : function() {
var p = this.controller.getProject();
var d = p.getFullDataset();
var f = p.getSortedFilteredDataset();
var text = 'showing ' + morpheus.Util.intFormat(f.getRowCount())
+ ' of ' + morpheus.Util.intFormat(d.getRowCount()) + ' rows, '
+ morpheus.Util.intFormat(f.getColumnCount()) + ' of '
+ morpheus.Util.intFormat(d.getColumnCount()) + ' columns';
this.$dimensionsLabel.html(text);
},
updateSelectionLabel : function() {
var nc = this.controller.getProject().getColumnSelectionModel().count();
var nr = this.controller.getProject().getRowSelectionModel().count();
var text = [];
text.push(morpheus.Util.intFormat(nr) + ' row');
if (nr !== 1) {
text.push('s');
}
text.push(' selected, ');
text.push(morpheus.Util.intFormat(nc) + ' column');
if (nc !== 1) {
text.push('s');
}
text.push(' selected');
this.$selectionLabel.html(text.join(''));
},
searchDendrogram : function(isColumns) {
var text = $.trim(isColumns ? this.$searchColumnDendrogram.val()
: this.$searchRowDendrogram.val());
var dendrogram = isColumns ? this.controller.columnDendrogram
: this.controller.rowDendrogram;
var $searchResults = isColumns ? this.$searchResultsColumnDendrogram
: this.$searchResultsRowDendrogram;
var matches = morpheus.AbstractDendrogram.search(
dendrogram.tree.rootNode, text);
if (matches === -1) {
$searchResults.html('');
} else {
$searchResults.html(matches + ' match'
+ (matches === 1 ? '' : 'es'));
}
if (matches <= 0) {
var positions = isColumns ? this.controller
.getHeatMapElementComponent().getColumnPositions()
: this.controller.getHeatMapElementComponent()
.getRowPositions();
positions.setSquishedIndices(null);
if (isColumns) {
this.controller.getProject().setGroupColumns([], true);
} else {
this.controller.getProject().setGroupRows([], true);
}
positions.setSize(isColumns ? this.controller.getFitColumnSize()
: this.controller.getFitRowSize());
} else {
morpheus.AbstractDendrogram.squishNonSearchedNodes(this.controller,
isColumns);
}
this.controller.updateDataset(); // need to update spaces for group
// by
this.controller.revalidate();
},
search : function(isRows) {
this.searching = true;
var isMatchesOnTop = isRows ? this.$rowMatchesToTop
.hasClass('btn-primary') : this.$columnMatchesToTop
.hasClass('btn-primary');
var controller = this.controller;
var project = controller.getProject();
var sortKeys = isRows ? project.getRowSortKeys() : project
.getColumnSortKeys();
var keyIndex = -1;
for (var i = 0; i < sortKeys.length; i++) {
if (sortKeys[i].toString() === 'matches on top') {
keyIndex = i;
break;
}
}
if (keyIndex !== -1) {
sortKeys.splice(keyIndex, 1);
}
var dataset = project.getSortedFilteredDataset();
var $searchResultsLabel = this.$el.find('[name=searchResults'
+ (isRows ? 'Rows' : 'Columns') + ']');
var searchText = !isRows ? $.trim(this.$columnTextField.val()) : $
.trim(this.$rowTextField.val());
var metadata = isRows ? dataset.getRowMetadata() : dataset
.getColumnMetadata();
var visibleIndices = [];
controller.getVisibleTrackNames(!isRows).forEach(function(name) {
visibleIndices.push(morpheus.MetadataUtil.indexOf(metadata, name));
});
metadata = new morpheus.MetadataModelColumnView(metadata,
visibleIndices);
var searchResultViewIndices = morpheus.MetadataUtil.search({
model : metadata,
text : searchText,
isColumns : !isRows,
defaultMatchMode : isRows ? this.defaultRowMatchMode
: this.defaultColumnMatchMode
});
if (searchText === '') {
$searchResultsLabel.html('');
if (isRows) {
this.$rowSearchDiv.hide();
} else {
this.$columnSearchDiv.hide();
}
} else {
$searchResultsLabel.html(searchResultViewIndices.length + ' match'
+ (searchResultViewIndices.length === 1 ? '' : 'es'));
if (isRows) {
this.$rowSearchDiv.show();
} else {
this.$columnSearchDiv.show();
}
}
var searchResultsModelIndices = [];
if (searchResultViewIndices != null) {
for (var i = 0, length = searchResultViewIndices.length; i < length; i++) {
var viewIndex = searchResultViewIndices[i];
searchResultsModelIndices.push(isRows ? project
.convertViewRowIndexToModel(viewIndex) : project
.convertViewColumnIndexToModel(viewIndex));
}
}
if (searchResultViewIndices !== null && isMatchesOnTop) {
var key = new morpheus.MatchesOnTopSortKey(project,
searchResultsModelIndices, 'matches on top');
sortKeys = sortKeys.filter(function(key) {
return !(key instanceof morpheus.MatchesOnTopSortKey);
});
searchResultViewIndices = key.indices; // matching indices
// are now on top
// add to beginning of sort keys
sortKeys.splice(0, 0, key);
if (isRows) {
project.setRowSortKeys(sortKeys, false);
} else {
project.setColumnSortKeys(sortKeys, false);
}
}
var searchResultsViewIndicesSet = new morpheus.Set();
if (searchResultViewIndices != null) {
for (var i = 0, length = searchResultViewIndices.length; i < length; i++) {
var viewIndex = searchResultViewIndices[i];
searchResultsViewIndicesSet.add(viewIndex);
}
}
if (searchResultViewIndices == null) {
searchResultViewIndices = [];
}
if (isRows) {
this.rowSearchResultModelIndices = searchResultsModelIndices;
this.rowSearchResultViewIndicesSorted = searchResultViewIndices
.sort(function(a, b) {
return a < b ? -1 : 1;
});
this.currentRowSearchIndex = -1;
} else {
this.columnSearchResultModelIndices = searchResultsModelIndices;
this.columnSearchResultViewIndicesSorted = searchResultViewIndices
.sort(function(a, b) {
return a < b ? -1 : 1;
});
this.currentColumnSearchIndex = -1;
}
// update selection
(!isRows ? project.getColumnSelectionModel() : project
.getRowSelectionModel()).setViewIndices(
searchResultsViewIndicesSet, true);
if (isMatchesOnTop) { // resort
if (isRows) {
project.setRowSortKeys(morpheus.SortKey.keepExistingSortKeys(
sortKeys, project.getRowSortKeys()), true);
} else {
project.setColumnSortKeys(morpheus.SortKey
.keepExistingSortKeys(sortKeys, project
.getColumnSortKeys()), true);
}
}
this.updateDimensionsLabel();
this.updateSelectionLabel();
this.searching = false;
}
};