From f9d10fc4763961e6c05090faddf3285bfeeef9ea Mon Sep 17 00:00:00 2001
From: Egor Makarenko <egormkn@yandex.ru>
Date: Fri, 18 Oct 2019 15:46:25 +0300
Subject: [PATCH] Add git submodule with instances

---
 .gitmodules                                   |  3 +++
 .../e_coli_core__FastSNP.xml                  | 24 +++++++++++++++++++
 .../e_coli_core__Original.xml                 | 24 +++++++++++++++++++
 .../iAB_RBC_283__FastSNP.xml                  | 24 +++++++++++++++++++
 .../iAB_RBC_283__Original.xml                 | 24 +++++++++++++++++++
 .idea/runConfigurations/iAF692__FastSNP.xml   | 24 +++++++++++++++++++
 .idea/runConfigurations/iAF692__Original.xml  | 24 +++++++++++++++++++
 instances                                     |  1 +
 8 files changed, 148 insertions(+)
 create mode 100644 .gitmodules
 create mode 100644 .idea/runConfigurations/e_coli_core__FastSNP.xml
 create mode 100644 .idea/runConfigurations/e_coli_core__Original.xml
 create mode 100644 .idea/runConfigurations/iAB_RBC_283__FastSNP.xml
 create mode 100644 .idea/runConfigurations/iAB_RBC_283__Original.xml
 create mode 100644 .idea/runConfigurations/iAF692__FastSNP.xml
 create mode 100644 .idea/runConfigurations/iAF692__Original.xml
 create mode 160000 instances

diff --git a/.gitmodules b/.gitmodules
new file mode 100644
index 0000000..42e170a
--- /dev/null
+++ b/.gitmodules
@@ -0,0 +1,3 @@
+[submodule "instances"]
+	path = instances
+	url = ssh://git@ctddev.ifmo.ru:22089/emakarenko/instances.git
diff --git a/.idea/runConfigurations/e_coli_core__FastSNP.xml b/.idea/runConfigurations/e_coli_core__FastSNP.xml
new file mode 100644
index 0000000..1cec431
--- /dev/null
+++ b/.idea/runConfigurations/e_coli_core__FastSNP.xml
@@ -0,0 +1,24 @@
+<component name="ProjectRunConfigurationManager">
+  <configuration default="false" name="e_coli_core: FastSNP" type="PythonConfigurationType" factoryName="Python" folderName="e_coli_core">
+    <module name="COBRApy" />
+    <option name="INTERPRETER_OPTIONS" value="" />
+    <option name="PARENT_ENVS" value="true" />
+    <envs>
+      <env name="PYTHONUNBUFFERED" value="1" />
+    </envs>
+    <option name="SDK_HOME" value="" />
+    <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+    <option name="IS_MODULE_SDK" value="true" />
+    <option name="ADD_CONTENT_ROOTS" value="true" />
+    <option name="ADD_SOURCE_ROOTS" value="true" />
+    <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
+    <option name="SCRIPT_NAME" value="$PROJECT_DIR$/run.py" />
+    <option name="PARAMETERS" value="--model e_coli_core --method fastSNP" />
+    <option name="SHOW_COMMAND_LINE" value="false" />
+    <option name="EMULATE_TERMINAL" value="false" />
+    <option name="MODULE_MODE" value="false" />
+    <option name="REDIRECT_INPUT" value="false" />
+    <option name="INPUT_FILE" value="" />
+    <method v="2" />
+  </configuration>
+</component>
\ No newline at end of file
diff --git a/.idea/runConfigurations/e_coli_core__Original.xml b/.idea/runConfigurations/e_coli_core__Original.xml
new file mode 100644
index 0000000..ae25e9a
--- /dev/null
+++ b/.idea/runConfigurations/e_coli_core__Original.xml
@@ -0,0 +1,24 @@
+<component name="ProjectRunConfigurationManager">
+  <configuration default="false" name="e_coli_core: Original" type="PythonConfigurationType" factoryName="Python" folderName="e_coli_core">
+    <module name="COBRApy" />
+    <option name="INTERPRETER_OPTIONS" value="" />
+    <option name="PARENT_ENVS" value="true" />
+    <envs>
+      <env name="PYTHONUNBUFFERED" value="1" />
+    </envs>
+    <option name="SDK_HOME" value="" />
+    <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+    <option name="IS_MODULE_SDK" value="true" />
+    <option name="ADD_CONTENT_ROOTS" value="true" />
+    <option name="ADD_SOURCE_ROOTS" value="true" />
+    <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
+    <option name="SCRIPT_NAME" value="$PROJECT_DIR$/run.py" />
+    <option name="PARAMETERS" value="--model e_coli_core --method original" />
+    <option name="SHOW_COMMAND_LINE" value="false" />
+    <option name="EMULATE_TERMINAL" value="false" />
+    <option name="MODULE_MODE" value="false" />
+    <option name="REDIRECT_INPUT" value="false" />
+    <option name="INPUT_FILE" value="" />
+    <method v="2" />
+  </configuration>
+</component>
\ No newline at end of file
diff --git a/.idea/runConfigurations/iAB_RBC_283__FastSNP.xml b/.idea/runConfigurations/iAB_RBC_283__FastSNP.xml
new file mode 100644
index 0000000..d04e5f5
--- /dev/null
+++ b/.idea/runConfigurations/iAB_RBC_283__FastSNP.xml
@@ -0,0 +1,24 @@
+<component name="ProjectRunConfigurationManager">
+  <configuration default="false" name="iAB_RBC_283: FastSNP" type="PythonConfigurationType" factoryName="Python" folderName="iAB_RBC_283">
+    <module name="COBRApy" />
+    <option name="INTERPRETER_OPTIONS" value="" />
+    <option name="PARENT_ENVS" value="true" />
+    <envs>
+      <env name="PYTHONUNBUFFERED" value="1" />
+    </envs>
+    <option name="SDK_HOME" value="" />
+    <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+    <option name="IS_MODULE_SDK" value="true" />
+    <option name="ADD_CONTENT_ROOTS" value="true" />
+    <option name="ADD_SOURCE_ROOTS" value="true" />
+    <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
+    <option name="SCRIPT_NAME" value="$PROJECT_DIR$/run.py" />
+    <option name="PARAMETERS" value="--model iAB_RBC_283 --method fastSNP" />
+    <option name="SHOW_COMMAND_LINE" value="false" />
+    <option name="EMULATE_TERMINAL" value="false" />
+    <option name="MODULE_MODE" value="false" />
+    <option name="REDIRECT_INPUT" value="false" />
+    <option name="INPUT_FILE" value="" />
+    <method v="2" />
+  </configuration>
+</component>
\ No newline at end of file
diff --git a/.idea/runConfigurations/iAB_RBC_283__Original.xml b/.idea/runConfigurations/iAB_RBC_283__Original.xml
new file mode 100644
index 0000000..136a7c2
--- /dev/null
+++ b/.idea/runConfigurations/iAB_RBC_283__Original.xml
@@ -0,0 +1,24 @@
+<component name="ProjectRunConfigurationManager">
+  <configuration default="false" name="iAB_RBC_283: Original" type="PythonConfigurationType" factoryName="Python" folderName="iAB_RBC_283">
+    <module name="COBRApy" />
+    <option name="INTERPRETER_OPTIONS" value="" />
+    <option name="PARENT_ENVS" value="true" />
+    <envs>
+      <env name="PYTHONUNBUFFERED" value="1" />
+    </envs>
+    <option name="SDK_HOME" value="" />
+    <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+    <option name="IS_MODULE_SDK" value="true" />
+    <option name="ADD_CONTENT_ROOTS" value="true" />
+    <option name="ADD_SOURCE_ROOTS" value="true" />
+    <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
+    <option name="SCRIPT_NAME" value="$PROJECT_DIR$/run.py" />
+    <option name="PARAMETERS" value="--model iAB_RBC_283 --method original" />
+    <option name="SHOW_COMMAND_LINE" value="false" />
+    <option name="EMULATE_TERMINAL" value="false" />
+    <option name="MODULE_MODE" value="false" />
+    <option name="REDIRECT_INPUT" value="false" />
+    <option name="INPUT_FILE" value="" />
+    <method v="2" />
+  </configuration>
+</component>
\ No newline at end of file
diff --git a/.idea/runConfigurations/iAF692__FastSNP.xml b/.idea/runConfigurations/iAF692__FastSNP.xml
new file mode 100644
index 0000000..7e3c16f
--- /dev/null
+++ b/.idea/runConfigurations/iAF692__FastSNP.xml
@@ -0,0 +1,24 @@
+<component name="ProjectRunConfigurationManager">
+  <configuration default="false" name="iAF692: FastSNP" type="PythonConfigurationType" factoryName="Python" folderName="iAF692">
+    <module name="COBRApy" />
+    <option name="INTERPRETER_OPTIONS" value="" />
+    <option name="PARENT_ENVS" value="true" />
+    <envs>
+      <env name="PYTHONUNBUFFERED" value="1" />
+    </envs>
+    <option name="SDK_HOME" value="" />
+    <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+    <option name="IS_MODULE_SDK" value="true" />
+    <option name="ADD_CONTENT_ROOTS" value="true" />
+    <option name="ADD_SOURCE_ROOTS" value="true" />
+    <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
+    <option name="SCRIPT_NAME" value="$PROJECT_DIR$/run.py" />
+    <option name="PARAMETERS" value="--model iAF692 --method fastSNP" />
+    <option name="SHOW_COMMAND_LINE" value="false" />
+    <option name="EMULATE_TERMINAL" value="false" />
+    <option name="MODULE_MODE" value="false" />
+    <option name="REDIRECT_INPUT" value="false" />
+    <option name="INPUT_FILE" value="" />
+    <method v="2" />
+  </configuration>
+</component>
\ No newline at end of file
diff --git a/.idea/runConfigurations/iAF692__Original.xml b/.idea/runConfigurations/iAF692__Original.xml
new file mode 100644
index 0000000..798bdf0
--- /dev/null
+++ b/.idea/runConfigurations/iAF692__Original.xml
@@ -0,0 +1,24 @@
+<component name="ProjectRunConfigurationManager">
+  <configuration default="false" name="iAF692: Original" type="PythonConfigurationType" factoryName="Python" folderName="iAF692">
+    <module name="COBRApy" />
+    <option name="INTERPRETER_OPTIONS" value="" />
+    <option name="PARENT_ENVS" value="true" />
+    <envs>
+      <env name="PYTHONUNBUFFERED" value="1" />
+    </envs>
+    <option name="SDK_HOME" value="" />
+    <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+    <option name="IS_MODULE_SDK" value="true" />
+    <option name="ADD_CONTENT_ROOTS" value="true" />
+    <option name="ADD_SOURCE_ROOTS" value="true" />
+    <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
+    <option name="SCRIPT_NAME" value="$PROJECT_DIR$/run.py" />
+    <option name="PARAMETERS" value="--model iAF692 --method original" />
+    <option name="SHOW_COMMAND_LINE" value="false" />
+    <option name="EMULATE_TERMINAL" value="false" />
+    <option name="MODULE_MODE" value="false" />
+    <option name="REDIRECT_INPUT" value="false" />
+    <option name="INPUT_FILE" value="" />
+    <method v="2" />
+  </configuration>
+</component>
\ No newline at end of file
diff --git a/instances b/instances
new file mode 160000
index 0000000..e205268
--- /dev/null
+++ b/instances
@@ -0,0 +1 @@
+Subproject commit e205268b090346f26f6db9a0cff46af26d31cff8
-- 
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