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Egor Makarenko
instances
Commits
8614e737
Unverified
Commit
8614e737
authored
Oct 18, 2019
by
Egor Makarenko
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Add FBA with original constraints for iAF692
parent
e205268b
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iAF692/output/cobrapy-fba-original.tsv
iAF692/output/cobrapy-fba-original.tsv
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iAF692/output/cobrapy-fba-original.tsv
0 → 100644
View file @
8614e737
fluxes
CS 0.03433707666938888
CSND 0.0
CTPS1 0.0036930244508141183
CTPS2 0.0
CYRDAAT 0.00012693934660521337
CYRDAR 6.346967330260669e-05
CYRDAS 0.00012693934660521337
CYSDS 0.0
EX_s_e 0.0
CYSS -0.013017978140251941
CYSTRS 0.0
CYSt2r 0.016266955902023646
EX_so4_e 0.0
CYTK1 0.0015913480704588588
EX_thm_e 0.0
EX_tma_e 0.0
GLCGSD 0.0
EX_pi_e -0.024393339205496467
CYTK2 0.0005765831502975197
Clt 0.0
EX_pnto__R_e 0.0
EX_pro__L_e 0.0
Cuabc 0.0
GLCNt2r 0.0
Cut1 0.0
DADK 0.0
DAPDC 0.010056060052796965
DAPDH 0.010056060052796965
DB4PS 0.00025387869321042675
GLCP 0.0
DBTS 0.0
GLCS2 0.00041322238778870087
DCMPDA -0.0005765831502975197
GLNS 0.0651789931588051
GLNTRAT 0.0
GLU5K 0.006478191549325129
GLUDC 0.0
2PGK 0.0
2PLS 2.0448871763612275e-05
4ABZt2r 0.0006341879044215321
4KFBPP 0.011155761175233593
5HBZIDS 0.00012693934660521337
7MHS 1.339022643514909e-05
7MHTS 1.339022643514909e-05
GLUDxi 0.0
GLUDy -0.22585358320689902
GLUPRT 0.013421655242015332
DCTPD 0.0
ABTA 0.0
DGGGPS 0.0005780560752053862
DGGGPS2 0.0010117119485341245
ACACT1r 0.012718144189916084
ACBIPGT 0.00012693934660521337
GLUS_F420 0.0
GLUTRR 0.0014440020187664777
GLUTRS 0.0014440020187664777
GLUTRS_Gln 0.0
ACCOAL 0.0
ACGK 0.009622216716298135
ACGS 0.0
ACHBS 0.008513505967467791
GLUt2r 0.0
ACKr 0.00043357553197012746
DGGPGP 1.805002523458097e-05
GLYALDt 0.0
GLYBabc 0.0
DGGPGP2 0.00027101818304741754
GLYCt 0.0
ACLDC 0.0
ACLS 0.025606371036011433
ACONMT 0.0
GLYTRS 0.0
DHAD1 0.025606371036011433
GLYt4 -0.006964861274533572
GMAND 0.0
ACONT 0.03433707666938888
ACOTA -0.009622216716298135
DHAD2 0.008513505967467791
DHDPRy 0.010056060052796965
DHDPS 0.010056060052796965
DHFR 0.0008886022066893647
ACP1_FMN 0.0
GMPS 0.007308909803132485
GMPS2 0.0
DHFS 1.6336076250891493e-06
DHNPA2r 0.0006341879044215321
DHORD7 0.009144185632563313
ACS2 0.0
ACTNt2r 0.0
DHORTS -0.009144185632563313
HXPRT 0.0
DHPCPH 0.0006341879044215321
GOFUCR 0.0
GRTT 0.0021678240989448966
DHPM1 0.0
GRTT2 0.0010117119485341245
DHPM2 0.0
GTHOr 0.0
GTPCIII 0.0007815761227903577
GUAD 0.0
GUAPRT 0.0
H2MPTR 0.0006325542967964429
H2Ot -3.1341135305390955
H2St1 0.0
ACYP 0.0
EX_pyr_e 0.0
ACYP_2 0.0
ACt2r 0.0
ADCPS2 0.00012693934660521337
ADCYRS 0.00012693934660521337
ADD 0.0
ADK1 0.0
ADK2 0.17193935106098285
H2td 0.0
H4MPTGL_atp 0.0006325542967964429
H4MPTGL_gtp 0.0
H4MPTS10 0.0006325542967964429
ADK3 0.0
ADK4 0.0
ADKd 0.0
H4MPTS11 0.0006325542967964429
H4MPTS12 0.0006325542967964429
H4MPTS13 0.0006325542967964429
ADNCYC 0.0
ADNK1 0.0023877451779157855
H4MPTS14 0.0006325542967964429
ADOCBIAH 0.0
H4MPTS15 0.0006325542967964429
ADOCBLS2 0.00012693934660521337
DHPS2 1.6336076250891493e-06
ADPT 0.0
ADSL1r 0.00888987840153277
H4MPTS16 0.0006325542967964429
H4MPTS9 0.0006325542967964429
HASD 7.225366184406447e-05
HATGH 0.00027101818304741754
DHPS3 0.0006325542967964429
HATIH 0.0003612683092203224
HATSH 0.00037942545626638456
ADSL2r 0.013421655242015332
ADSS 0.00888987840153277
AGAIAGT 0.00043357553197012746
AGAID 0.00043357553197012746
AGMT 0.0
AGPR -0.009622216716298135
AHCi 0.0023877451779157855
HCITS 0.0
AHGDx -0.0006325542967964429
HCO3E 0.031234673468694164
DHQTi 0.011155761175233593
HDR 3.2877829285846643
HETZK 0.0
HEX7 0.0
AHMMPS 0.0
AHSERL2 0.013017978140251941
DHQS2 0.011155761175233593
AHXDH 0.0
AICART 0.016198788204665256
AIRC2 0.013421655242015332
DIPS 0.0
AIRC3 -0.013421655242015332
AKACAL 1.339022643514909e-05
AKGCAL 1.339022643514909e-05
AKP1 0.0
AKPCAL 1.339022643514909e-05
HISDC 0.0
HISTD 0.002777132962649921
HISTP 0.002777132962649921
HISTRS 0.0
AKSCAL 0.0
AKSDC 1.339022643514909e-05
ALACt2r 0.0
DKFPR 0.011155761175233593
HKt 0.0
DKFPS 0.011155761175233593
HMBS 0.00018050025234580972
HMGCOAR -0.012718144189916084
HMGCOAS -0.012718144189916084
ALATA_L -0.015053292558394606
ALATRS 0.0
ALAt4 0.0
ALCD20y 0.0
ALCD2y 0.0
ALDD1 0.0
ALDD2x 0.0
HMPK1 0.0
ALKP 0.0
DKMPASPL 0.011155761175233593
AMAOTr 0.0
ANPRT 0.0016657441685325465
HPACt2r 0.0
HPPK2 0.0006341879044215321
HSDy -0.013017978140251941
DMAMT 0.0
HSERTA 0.013017978140251941
HSK 0.0
DMATT 0.0021678240989448966
HSPMS 0.00012586812849040143
HSTPT 0.002777132962649921
ICDHyr 0.03433707666938888
EX_ribflv_e 0.0
ANS 0.0016657441685325465
IG3PS 0.002777132962649921
DMATT2 0.0010117119485341245
IGPDH 0.002777132962649921
IGPS 0.0016657441685325465
ILETA -0.008513505967467791
AOXSr 0.0
APPLP 0.0
ARGDC 0.0
ARGDr -0.00866883259411552
ARGSL 0.0
ARGSS 0.0
ILETRS 0.0
ILEt2r 0.0
IMPC -0.016198788204665256
IMPD 0.007308909803132485
IND3ACt2r 0.0
INS2D 0.0
IOR 0.0
IOR2 0.0
ARGTRS 0.0
ASAD -0.0342297993682825
ASD 1.805002523458097e-05
IOR3 0.0
IPDDI3x 0.0021678240989448966
IPDDI3y 0.0
ASNN 0.0
ASNS1 0.007064683467184659
ASP1DC 1.5800467193484294e-06
IPMD 0.013202763265057002
ASPCT 0.009144185632563313
DMAt 0.0
ASPK 0.0342297993682825
ASPTA -0.07981646562548259
IPPMIa -0.013202763265057002
IPPMIb -0.013202763265057002
IPPS 0.013202763265057002
KARA1 -0.025606371036011433
KARA2 0.008513505967467791
ASPTRS 0.0
ATGH 1.805002523458097e-05
ATIH 0.000505829193814192
ATPM 0.8
ATPPRT 0.002777132962649921
ATPS1 0.0
ATPS4r 2.356531473266317
Kt2r_copy1 0.0
Kt2r_copy2 0.0
LDH_L -2.0448871763612275e-05
LEUTA -0.013202763265057002
LEUTRS 0.0
ATRZCH 0.0
ATSH 5.417685615661321e-05
LEUt2r 0.0
BACCL 0.0
LPFPLT 2.0448871763612275e-05
DMHDRFS 2.0448871763612275e-05
LPPGS 2.0448871763612275e-05
BLAT 0.0
BRFAPS 0.0006325542967964429
BTNt2i 0.0
BTS3r 0.0
DMSt 0.0
CA2abc 0.0
LYSAM 0.0
DNMPPA 0.0006341879044215321
CAT 0.0
CAt6 0.0
EX_so3_e -0.0005506061110133305
CBIAT 0.0
CBIabc 0.0
CBL1HBIabc 0.0
LYSTRS 0.0
LYSt3r 0.0
MAN1PT2 0.0
MAN6PI 0.0
MCMMT 5.1
CBL1abc 0.0
MCR 3.2877829285846643
DOHDUS 0.011155761175233593
MDH 0.07090797226076023
MDHi2 0.0
MDHy 0.043245570034111225
CBLAT2 0.0
CBLD 0.0
CBPS 0.017813018226678832
CD2abc1 0.0
CD2abc2 0.0
CDGGGPP3 1.805002523458097e-05
CDGGGPP4 0.00027101818304741754
CDGGGS 0.0005780560752053862
DPCOAK 1.5800467193484294e-06
CDGGGS2 0.0010117119485341245
CDGGGSAT 5.417685615661321e-05
ME1 -0.09184200865132336
DPGase 0.0
MEOHt2 5.1
METAT 0.0023877451779157855
CDGGGSAT2 0.00037942545626638456
CDGGIPT 0.000505829193814192
CDGGIPT2 0.0003612683092203224
CDPGH 0.0
CDPGS 0.0
CF3Ha -4.914262093605013e-09
CF3Hg 0.0
CF3Sa 1.2898800225788587e-07
METGL 0.008513505967467791
METS 0.015405723318167728
METTRS 0.0
MEVK1 0.012718144189916084
CF3Sg 1.339022643514909e-07
CH2ACH 1.339022643514909e-05
CH3ACH 1.339022643514909e-05
CH4St -0.008513505967467791
CH4t -3.2877829285846643
MG2abc 0.0
MGt5 0.0
MI1PP 0.0008670975030345143
MI1PS 0.0008670975030345143
MMAMT 0.0
MMAt 0.0
MNabc 0.0
MOBDabc 0.0
CHACH 1.339022643514909e-05
CHORM 0.009490017006701048
CHORS 0.011155761175233593
CMLDC 0.0
DPMVD 0.01170643224138196
CO2t -0.7606116756730363
COBALTt5 -0.00012693934660521337
DPMVD2 0.0010117119485341245
COBS 1.339022643514909e-05
MOHMT 1.5800467193484294e-06
DPR 1.5800467193484294e-06
MPML 0.0
COCHL 0.0
CODH2r 0.0
CODHr -0.3833532961901457
MTAP 0.0
MTCMMT 0.0
COMS 0.0005506061110133305
DROPPRx 0.00014738821836882566
COabc 0.0
COt 0.0
CPC2MT 0.00012693934660521337
CPC3MT 0.00012693934660521337
CPC4MT 0.00012693934660521337
MTHFC 0.029620443446680588
MTHFD2i 0.029620443446680588
MTHFR3 0.015405723318167728
MTSPC -1.4288637752251898
MTSPCMMT -1.8122170714153354
BIOMASS_Mb_30 0.026780452870298177
N2tr 0.0
CPC5MT 0.00012693934660521337
CPC6MT 0.00012693934660521337
NACt 7.311075787962834e-05
CPC6R 0.00012693934660521337
NADK 1.4193761564945673e-05
CPC8MM 0.00012693934660521337
DROPPRy 0.0
NADS1 7.311075787962834e-05
DRTPPD 0.00014738821836882566
DTMPK 0.0008869685990642755
DURIPP 0.0
NADS2 0.0
NAPRT 0.00020005010448484172
ECHH_10 0.7478930453924004
NAt3_1 3.0738041601315365
PACCOAL2 0.0
PACCOAL3 0.0
ENO -0.10398179486030246
PACt2r 0.0
NBAHH_ir 0.0
NDPK1 0.01587695499366064
NDPK2 0.008527431802960346
NDPK3 0.0015913480704588588
NDPK4 0.0008869685990642755
NDPK5 0.0005765831502975197
PANTS 1.5800467193484294e-06
PAPSR 0.0
NDPK6 0.0
NDPK7 0.0005765831502975197
ETHAt6 0.0
NDPK8 0.0
NDPK9 0.0
NH4t 0.3001735176930195
PC 0.0
NIT_n1p4 0.0
EX_4abz_e -0.0006341879044215321
NIabc 0.0
PFK_adp 0.0
PGAMT -0.00043357553197012746
NIt5 -5.356090574059636e-05
NMNAT 0.0
PGCD 0.04130555844757779
PGI -0.0012803198908232151
NN5HBPRT 0.00012693934660521337
EX_4hphac_e 0.0
NNATr 7.311075787962834e-05
NNDPR 0.0
PGK 0.06267623641272467
PGLYCP 0.0
PGM 0.10398179486030246
PGMT -0.00041322238778870087
NTP1 0.0
NTP2 0.0
EX_ac_e 0.0
NTP3 0.0
NTP4 0.0
NTP5 0.0
NTP6 0.0
PHETA1 -0.00542839779680944
PHETRS 0.0
PIabc 0.024393339205496467
EX_actn__R_e 0.0
PMANM 0.0
PMDPHT 0.00014738821836882566
NTP7 0.0
NTP8 0.0
EX_ala__L_e 0.0
NTP9 0.0
NTRIR2x 0.0
PMEVK 0.012718144189916084
PMPK 0.0
PNTK 1.5800467193484294e-06
NTRIR2y 0.0
NaKt_1 0.0
PNTOt2 0.0
OCBT 0.00866883259411552
EX_alac__S_e 0.0
OMCDC 0.013202763265057002
OMPDC 0.009144185632563313
POR2 -0.2976175139840026
POR3 0.0
OORr 8.034135861089453e-08
EX_btn_e 0.0
OPAH 0.0
ORNCD 0.0
PPA 0.0
PPAKr 0.0
ORNDC 0.0009533841221826151
EX_ca2_e 0.0
ORNTAC 0.009622216716298135
ORPT -0.009144185632563313
PPA_1 0.20429761403859176
PPBNGS 0.0007220010093832389
PPCDC 1.5800467193484294e-06
PPDK 0.1156881621465494
PPK2 0.17181241171437764
EX_cbi_e 0.0
PPNCL2 1.5800467193484294e-06
PPND 0.004061619209891607
PPNDH 0.00542839779680944
EX_cbl1_e 0.0
PPS 0.0
PRAGSr 0.013421655242015332
EX_cbl1hbi_e 0.0
PRAIS 0.013421655242015332
PRAIi 0.0016657441685325465
PRAMPC 0.002777132962649921
EX_cd2_e 0.0
EX_ch4_e 3.2877829285846643
PRASCSi 0.013421655242015332
EX_ch4s_e 0.008513505967467791
PRATPP 0.002777132962649921
PRFGS 0.013421655242015332
EX_cit_e 0.0
PRMICI 0.002777132962649921
PROTRS 0.0
EX_cl_e 0.0
PROabc 0.0
PROt2r 0.0
EX_co2_e 0.7606116756730363
PRPPP 0.0
PRPPS 0.028473876703838837
EX_co_e 0.0
PSCVT 0.011155761175233593
PSERT 0.04130555844757779
PSLP 0.0005506061110133305
PSLS 0.0005506061110133305
PSP_L 0.04130555844757779
EX_cobalt2_e -0.00012693934660521337
PTAr -0.00043357553197012746
EX_cu2_e 0.0
EX_cys__L_e -0.016266955902023646
PTHPS 0.0
PTPATi 1.5800467193484294e-06
EX_dma_e 0.0
PYK 0.0
PYRDC 0.007447643943229923
EX_dms_e 0.0
PYRt2 0.0
QULNS 0.0
RBFSa 0.00025387869321042675
RBFSb 0.00012693934660521337
RBK 0.0
EX_etha_e 0.0
EX_fe2_e 0.0
EX_fe3_e 0.0
EX_fol_e 0.0
EX_gcald_e 0.0006341879044215321
EX_glcn_e 0.0
EX_glu__L_e 0.0
EX_gly_e 0.006964861274533572
EX_glyald_e 0.0
EX_glyb_e 0.0
EX_glyc_e 0.0
EX_h2_e 0.0
EX_h2o_e 3.1341135305390955
EX_h2s_e 0.0
EX_h_e 0.270827399221521
EX_ile__L_e 0.0
EX_ind3ac_e 0.0
EX_k_e 0.0
EX_leu__L_e 0.0
EX_lys__L_e 0.0
EX_meoh_e -5.1
EX_mg2_e 0.0
EX_mma_e 0.0
EX_mn2_e 0.0
EX_mobd_e 0.0
EX_n2_e 0.0
EX_na1_e 0.0
EX_nac_e -7.311075787962834e-05
EX_nh4_e -0.3001735176930195
EX_ni2_e -5.356090574059636e-05
EX_pac_e 0.0
EX_tsul_e 0.0
EX_unknown_cbl1deg_e 0.0
EX_unknown_rbfdeg_e 0.00012693934660521337
EX_urea_e 0.0
EX_val__L_e 0.0
EX_zn2_e 0.0
F430S1 5.356090574059636e-05
F430S2 5.356090574059636e-05
F430S3 5.356090574059636e-05
F430S4 5.356090574059636e-05
F430S5 5.356090574059636e-05
F4D 3.2877829285846643
F4H2O 0.0
F4MTSPD -1.4288637752251898
F4MTSPR -1.4288637752251898
F4NH 0.0
F4NPR -0.3278845683960317
F4RHi 0.7478930453924004
FBA -0.03202149352939311
FBA2 0.0
FBP 0.02086573235415952
FBPO 0.011155761175233593
FCLPA 0.0
FDH 0.0010559036877643966
FE2abc 0.0
FE3abc 0.0
FEDCabc 0.0
FMETTRS 0.0
FMFD_b -1.4288637752251898
FMFTSPFT_b -1.4288637752251898
FOLR2 0.0
FOLt 0.0
FRTT 0.0021678240989448966
FRTT2 0.0010117119485341245
FUM 0.0223115336435481
G1PACT 0.00043357553197012746
G1PDH 0.001878836232021509
G1PTT 0.0
G1SAT 0.0014440020187664777
OXADC 2.0448871763612275e-05
G5SADs 0.006478191549325129
P5CRx 0.006478191549325129
RBPC 0.0
G5SD2 0.006478191549325129
RBPI 0.0
RH2CD 1.339022643514909e-05
RH3CD 1.339022643514909e-05
PACCOAL 0.0
G6PDH3 0.0
RIBFLVt2 0.0
RNDR1 0.0
GALT 0.0
RNDR2 0.0005765831502975197
RNDR3 0.0
RNDR4 0.0014635517493617953
RNTR1 0.0008869685990642755
RNTR2 0.0
RNTR3 0.0
GALUi 0.00041322238778870087
RNTR4 0.0
RPE -0.019151836931366177
RPI -0.01889795823815575
GAPD -0.06267623641272467
RZ5PP2 0.00012693934660521337
SECS 0.0005506061110133305
GAPDi_nadp 0.0
SERAT -0.013017978140251941
SERTRS 0.0
SHCD 1.339022643514909e-05
GARFT 0.013421655242015332
SHCHCC 0.00012693934660521337
SHCHD2 0.0
GCALDt -0.0006341879044215321
SHCHF 0.0
SHK3Dr 0.011155761175233593
SHKK 0.011155761175233593
GDMANE 0.0
GF4GL_0 2.0448871763612275e-05
GF4GL_1 2.0448871763612275e-05
GF4GL_2 1.902950776176343e-05
SLDx 0.0
GF4GL_3 1.8333215987135677e-05
SLDxi2 0.0
GF4GL_4 8.317326613644157e-06
SLDy 0.0005506061110133305
SMTZS 0.0005506061110133305
GF4GL_5 3.0997120542500354e-07
SO3t 0.0005506061110133305
GF4GL_6 2.4997600452075908e-08
SO4t2 0.0
SPDC 0.0005506061110133305
SPODM 0.0
SSALx 0.0
SSALy 0.0
GF6PTA 0.00043357553197012746
SULabc 0.0
St 0.0
GGGPS 0.0015897680237395107
TALA -0.009575918465683089
GHMT2r 0.04591471541063194
TAPTPP 0.00014738821836882566
TAPTPPM 0.0006341879044215321
GK1 0.00745629802150131
TDPDRE 0.0
TDPDRR 0.0
GK_adp 0.0
TDPGDH 0.0
THACH 1.339022643514909e-05
THMabc 0.0
THRA -0.007574583289835137
THRPDC 0.00012693934660521337
LTHRK 0.00012693934660521337
THRS 0.0
THRTRS 0.0
THZPSN 0.0
TIH2CD 1.339022643514909e-05
TIH3CD 1.339022643514909e-05
TIHCD 1.339022643514909e-05
TKT1 -0.009575918465683089
TKT2 -0.009575918465683089
TMAMT 0.0
TMAt2 0.0
TMDK1 0.0
TMDPP 0.0
TMDS 0.0008869685990642755
TMK 0.0
TMPK 0.0
TMPPP 0.0
TPI -0.03390032976141462
TRDR 0.0029271034987235905
TRPS1 0.0
TRPS2 0.0016657441685325465
TRPS3 0.0016657441685325465
TRPTA 0.0
TRPTRS 0.0
TSR 0.0
TSULabc 0.0
TYRTA -0.004041170338127995
TYRTRS 0.0
UAG2E 0.0
UAG2EMA 0.0
UAGCVT 0.0
UAGDP 0.00043357553197012746
UAPGR 0.0
UDPG4E 0.0
UDPGD 0.0
UMPK_copy1 0.009144185632563313
UNK_CBL1DEGt 0.0
UNK_RBFDEGt -0.00012693934660521337
UPP3MT 0.00018050025234580972
UPP3S 0.00018050025234580972
UREAt 0.0
UMPK_copy2 0.0
URIDK2r -0.0014635517493617953
VALTA -0.012402027724235086
VALTRS 0.0
VALt2r 0.0
VOR 0.0
XPPT 0.0
YUMPS 0.0
ZNabc 0.0
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