Исправлены ошибки со сборкой.

Makefile

+.PHONY: Conversion.jar
+
 out_dir = temp
 
-Conversion.jar: src/inport/**/*.java src/constraints/*.mzn
+Conversion.jar:
 	mkdir -p $(out_dir)
-	javac -d $(out_dir) -encoding UTF-8 -classpath annotations-java8.jar src/inport/*.java src/inport/ConversionUtils/*.java
-	jar cfe Conversion.jar inport.Main -C $(out_dir) inport -C src constraints
+	javac -d $(out_dir) -encoding UTF-8 -cp annotations-java8.jar -cp org.sat4j.core.jar -cp org.sat4j.pb.jar src/inport/*.java src/inport/ConversionUtils/*.java
+	jar cfe Conversion.jar inport.Main org.sat4j.core.jar org.sat4j.pb.jar -C $(out_dir) inport -C src constraints
 	rm -r -f $(out_dir)

src/inport/ConversionUtils/Task.java

 package inport.ConversionUtils;
 
 import inport.*;
-import org.jetbrains.annotations.NotNull;
 
 import java.io.FileWriter;
 import java.io.IOException;
@@ -56,7 +55,7 @@ public class Task {
         }
 
         @Override
-        public int compareTo(@NotNull StorageSectionId id) {
+        public int compareTo(StorageSectionId id) {
             if (isRealStorage != id.isRealStorage) {
                 return (isRealStorage ? 1 : -1);
             }
@@ -1046,7 +1045,7 @@ public class Task {
             }
 
             @Override
-            public int compareTo(@NotNull OperationData o) {
+            public int compareTo(OperationData o) {
                 if (opId != o.opId) {
                     return Integer.compare(opId, o.opId);
                 }

src/inport/Storage.java

@@ -61,7 +61,13 @@ public class Storage {
         this.id = id;
     }
 
-    public Storage(int id, String name, double volume, ArrayList<Pair<Cargo, Double>> storageSections) {
+    public Storage(int id, String name, double volume, Cargo cargo) {
+        this.id = id;
+        this.name = name;
+        storageSections.add(new Pair<>(cargo, volume));
+    }
+
+    public Storage(int id, String name, ArrayList<Pair<Cargo, Double>> storageSections) {
         this.id = id;
         this.name = name;
         this.storageSections = storageSections;

src/inport/TransportShip.java

@@ -26,6 +26,11 @@ public class TransportShip extends MovingObject {
         this.storageSections = storageSections;
     }
 
+    public TransportShip(int id, String name, double volume, Cargo cargo) {
+        super(id, name);
+        storageSections.add(new Pair<>(cargo, volume));
+    }
+
     public TransportShip(int id, String name, ArrayList<Pair<Cargo, Double>> storageSections) {
         super(id, name);
         this.storageSections = storageSections;