string memory leaks

src/io/buffered_reader.js

-morpheus.BufferedReader = function(buffer) {
+morpheus.BufferedReader = function (buffer) {
 	this.buffer = buffer;
 	this.bufferLength = buffer.length;
 	this.index = 0;
 	if (typeof TextDecoder !== 'undefined') {
 		var textDecoder = new TextDecoder();
-		this.decoder = function(buf, start, end) {
+		this.decoder = function (buf, start, end) {
 			return textDecoder.decode(buf.subarray(start, end));
 		};
 	} else {
-		this.decoder = function(buf, start, end) {
+		this.decoder = function (buf, start, end) {
 			// TODO convert in chunks
-			var s = '';
+			var s = [];
 			for (var i = start; i < end; i++) {
-				s += String.fromCharCode(buffer[i]);
+				s.push(String.fromCharCode(buffer[i]));
 			}
-			return s;
+			return s.join('');
 		};
 	}
 };
 
 morpheus.BufferedReader.prototype = {
-	readLine : function() {
+	readLine: function () {
 		var index = this.index;
 		var bufferLength = this.bufferLength;
 		if (index >= bufferLength) {
@@ -35,7 +35,7 @@ morpheus.BufferedReader.prototype = {
 			if (c === 10 || c === 13) { // \n or \r
 				end = index;
 				if ((index !== bufferLength - 1)
-						&& (buffer[index + 1] === 10 || buffer[index + 1] === 13)) { // skip
+					&& (buffer[index + 1] === 10 || buffer[index + 1] === 13)) { // skip
 					// ahead
 					index++;
 				}
@@ -53,13 +53,13 @@ morpheus.BufferedReader.prototype = {
 	}
 };
 
-morpheus.BufferedReader.getArrayBuffer = function(fileOrUrl, callback) {
+morpheus.BufferedReader.getArrayBuffer = function (fileOrUrl, callback) {
 	var isString = typeof fileOrUrl === 'string' || fileOrUrl instanceof String;
 	if (isString) { // URL
 		var oReq = new XMLHttpRequest();
 		oReq.open('GET', fileOrUrl, true);
 		oReq.responseType = 'arraybuffer';
-		oReq.onload = function(oEvent) {
+		oReq.onload = function (oEvent) {
 			callback(null, oReq.response);
 		};
 
@@ -72,10 +72,10 @@ morpheus.BufferedReader.getArrayBuffer = function(fileOrUrl, callback) {
 		// }
 		// };
 
-		oReq.onerror = function(oEvent) {
+		oReq.onerror = function (oEvent) {
 			callback(oEvent);
 		};
-		oReq.onreadystatechange = function(oEvent) {
+		oReq.onreadystatechange = function (oEvent) {
 			if (oReq.readyState === 4 && oReq.status !== 200) {
 				oReq.onload = null;
 				oReq.onerror = null;
@@ -90,12 +90,12 @@ morpheus.BufferedReader.getArrayBuffer = function(fileOrUrl, callback) {
 		oReq.send(null);
 	} else {
 		var reader = new FileReader();
-		reader.onload = function(event) {
+		reader.onload = function (event) {
 			callback(null, event.target.result);
 		};
-		reader.onerror = function(event) {
+		reader.onerror = function (event) {
 			callback(event);
 		};
 		reader.readAsArrayBuffer(fileOrUrl);
 	}
-};
\ No newline at end of file
+};

src/io/gct_reader.js

@@ -76,6 +76,9 @@ morpheus.GctReader.prototype = {
 					dataColumnStart = numRowAnnotations + 1;
 				} else if (lineNumber === 2) {
 					columnNamesArray = result.data[0];
+					for (var i = 0; i < columnNamesArray.length; i++) {
+						columnNamesArray[i] = morpheus.Util.copyString(columnNamesArray[i]);
+					}
 					if (ncols === -1) {
 						ncols = columnNamesArray.length - numRowAnnotations - 1;
 					}
@@ -114,7 +117,7 @@ morpheus.GctReader.prototype = {
 				} else { // lines >=3
 					var tokens = result.data[0];
 					if (lineNumber < dataMatrixLineNumberStart) {
-						var metadataName = tokens[0];
+						var metadataName = morpheus.Util.copyString(tokens[0]);
 						var v = [];
 						columnMetadata.push(v);
 						columnMetadataNames.push(metadataName);

src/util/util.js

@@ -143,11 +143,13 @@ morpheus.Util.getWindowSearchObject = function () {
 };
 
 morpheus.Util.copyString = function (s) {
-	var copy = '';
+	//return (' ' + s).slice(1);
+	// return (' ' + s).substr(1);
+	var copy = [];
 	for (var i = 0, end = s.length; i < end; i++) {
-		copy += s[i];
+		copy.push(s[i]);
 	}
-	return copy;
+	return copy.join('');
 };
 morpheus.Util.getQueryParams = function (s) {
 	var params = {};