Commit 216d55d5 authored by joshua-gould's avatar joshua-gould

use gzipped gct CCLE CN file

parent 024f617f
......@@ -242,11 +242,16 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) {
.push({
dataset : '//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_hybrid_capture1650_hg19_NoCommonSNPs_NoNeutralVariants_CDS_2012.05.07.maf.txt'
});
// datasets
// .push({
// dataset :
// '//s3.amazonaws.com/appdata.cmap.org/morpheus/1650_HC_plus_RD_muts.maf.txt'
// });
}
if (options.cn) {
datasets
.push({
dataset : '//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_copynumber_byGene_2013-12-03.txt'
dataset : '//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_copynumber_byGene_2013-12-03.gct'
});
}
......@@ -281,6 +286,7 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) {
var datasetDef = morpheus.DatasetUtil.readDatasetArray({
dataset : datasets
});
var annotationDef = morpheus.DatasetUtil.annotate({
annotations : columnAnnotations,
isColumns : true
......@@ -301,6 +307,7 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) {
});
$.when.apply($, [ datasetDef, annotationDef ]).then(function() {
annotationCallbacks.forEach(function(f) {
f(datasetToReturn);
});
......
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