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morpheus.js
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Daria Zenkova
morpheus.js
Commits
216d55d5
Commit
216d55d5
authored
Apr 01, 2016
by
joshua-gould
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use gzipped gct CCLE CN file
parent
024f617f
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-1
src/sample_datasets.js
src/sample_datasets.js
+8
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src/sample_datasets.js
View file @
216d55d5
...
...
@@ -242,11 +242,16 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) {
.
push
({
dataset
:
'
//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_hybrid_capture1650_hg19_NoCommonSNPs_NoNeutralVariants_CDS_2012.05.07.maf.txt
'
});
// datasets
// .push({
// dataset :
// '//s3.amazonaws.com/appdata.cmap.org/morpheus/1650_HC_plus_RD_muts.maf.txt'
// });
}
if
(
options
.
cn
)
{
datasets
.
push
({
dataset
:
'
//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_copynumber_byGene_2013-12-03.
tx
t
'
dataset
:
'
//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_copynumber_byGene_2013-12-03.
gc
t
'
});
}
...
...
@@ -281,6 +286,7 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) {
var
datasetDef
=
morpheus
.
DatasetUtil
.
readDatasetArray
({
dataset
:
datasets
});
var
annotationDef
=
morpheus
.
DatasetUtil
.
annotate
({
annotations
:
columnAnnotations
,
isColumns
:
true
...
...
@@ -301,6 +307,7 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) {
});
$
.
when
.
apply
(
$
,
[
datasetDef
,
annotationDef
]).
then
(
function
()
{
annotationCallbacks
.
forEach
(
function
(
f
)
{
f
(
datasetToReturn
);
});
...
...
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