Commit 216d55d5 authored by joshua-gould's avatar joshua-gould

use gzipped gct CCLE CN file

parent 024f617f
...@@ -242,11 +242,16 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) { ...@@ -242,11 +242,16 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) {
.push({ .push({
dataset : '//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_hybrid_capture1650_hg19_NoCommonSNPs_NoNeutralVariants_CDS_2012.05.07.maf.txt' dataset : '//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_hybrid_capture1650_hg19_NoCommonSNPs_NoNeutralVariants_CDS_2012.05.07.maf.txt'
}); });
// datasets
// .push({
// dataset :
// '//s3.amazonaws.com/appdata.cmap.org/morpheus/1650_HC_plus_RD_muts.maf.txt'
// });
} }
if (options.cn) { if (options.cn) {
datasets datasets
.push({ .push({
dataset : '//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_copynumber_byGene_2013-12-03.txt' dataset : '//s3.amazonaws.com/appdata.cmap.org/morpheus/CCLE_copynumber_byGene_2013-12-03.gct'
}); });
} }
...@@ -281,6 +286,7 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) { ...@@ -281,6 +286,7 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) {
var datasetDef = morpheus.DatasetUtil.readDatasetArray({ var datasetDef = morpheus.DatasetUtil.readDatasetArray({
dataset : datasets dataset : datasets
}); });
var annotationDef = morpheus.DatasetUtil.annotate({ var annotationDef = morpheus.DatasetUtil.annotate({
annotations : columnAnnotations, annotations : columnAnnotations,
isColumns : true isColumns : true
...@@ -301,6 +307,7 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) { ...@@ -301,6 +307,7 @@ morpheus.SampleDatasets.getCCLEDataset = function(options) {
}); });
$.when.apply($, [ datasetDef, annotationDef ]).then(function() { $.when.apply($, [ datasetDef, annotationDef ]).then(function() {
annotationCallbacks.forEach(function(f) { annotationCallbacks.forEach(function(f) {
f(datasetToReturn); f(datasetToReturn);
}); });
......
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