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morpheus.js
Commit d68fcff3 authored by jgould's avatar jgould
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src/io/tcga_util.js
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...@@ -3,48 +3,49 @@ morpheus.TcgaUtil = function () { ...@@ -3,48 +3,49 @@ morpheus.TcgaUtil = function () {
}; };
morpheus.TcgaUtil.DISEASE_STUDIES = { morpheus.TcgaUtil.DISEASE_STUDIES = {
'LAML': 'Acute Myeloid Leukemia', "ACC": "Adrenocortical carcinoma",
'ACC': 'Adrenocortical carcinoma', "BLCA": "Bladder Urothelial Carcinoma",
'BLCA': 'Bladder Urothelial Carcinoma', "BRCA": "Breast invasive carcinoma",
'LGG': 'Brain Lower Grade Glioma', "CESC": "Cervical squamous cell carcinoma and endocervical adenocarcinoma",
'BRCA': 'Breast invasive carcinoma', "CHOL": "Cholangiocarcinoma",
'CESC': 'Cervical squamous cell carcinoma and endocervical adenocarcinoma', // "CNTL": "Controls",
'CHOL': 'Cholangiocarcinoma', "COAD": "Colon adenocarcinoma",
'LCML': 'Chronic Myelogenous Leukemia', "COADREAD": "Colonrectal adenocarcinoma",
'COAD': 'Colon adenocarcinoma', "DLBC": "Lymphoid Neoplasm Diffuse Large B-cell Lymphoma",
'CNTL': 'Controls', "ESCA": "Esophageal carcinoma ",
'ESCA': 'Esophageal carcinoma ', // "FPPP": "FFPE Pilot Phase II",
'FPPP': 'FFPE Pilot Phase II', "GBM": "Glioblastoma multiforme",
'GBM': 'Glioblastoma multiforme', "GBMLGG": "Glioma",
'HNSC': 'Head and Neck squamous cell carcinoma', "HNSC": "Head and Neck squamous cell carcinoma",
'KICH': 'Kidney Chromophobe', "KICH": "Kidney Chromophobe",
'KIRC': 'Kidney renal clear cell carcinoma', "KIPAN": "Pan-Kidney Cohort",
'KIRP': 'Kidney renal papillary cell carcinoma', "KIRC": "Kidney renal clear cell carcinoma",
'LIHC': 'Liver hepatocellular carcinoma', "KIRP": "Kidney renal papillary cell carcinoma",
'LUAD': 'Lung adenocarcinoma', "LAML": "Acute Myeloid Leukemia",
'LUSC': 'Lung squamous cell carcinoma', "LCML": "Chronic Myelogenous Leukemia",
'DLBC': 'Lymphoid Neoplasm Diffuse Large B-cell Lymphoma', "LGG": "Brain Lower Grade Glioma",
'MESO': 'Mesothelioma', "LIHC": "Liver hepatocellular carcinoma",
'MISC': 'Miscellaneous', "LUAD": "Lung adenocarcinoma",
'OV': 'Ovarian serous cystadenocarcinoma', "LUSC": "Lung squamous cell carcinoma",
'PAAD': 'Pancreatic adenocarcinoma', "MESO": "Mesothelioma",
'PCPG': 'Pheochromocytoma and Paraganglioma', // "MISC": "Miscellaneous",
'PRAD': 'Prostate adenocarcinoma', "OV": "Ovarian serous cystadenocarcinoma",
'READ': 'Rectum adenocarcinoma', "PAAD": "Pancreatic adenocarcinoma",
'SARC': 'Sarcoma', "PCPG": "Pheochromocytoma and Paraganglioma",
'SKCM': 'Skin Cutaneous Melanoma', "PRAD": "Prostate adenocarcinoma",
'STAD': 'Stomach adenocarcinoma', "READ": "Rectum adenocarcinoma",
'TGCT': 'Testicular Germ Cell Tumors', "SARC": "Sarcoma",
'THYM': 'Thymoma', "SKCM": "Skin Cutaneous Melanoma",
'THCA': 'Thyroid carcinoma', "STAD": "Stomach adenocarcinoma",
'UCS': 'Uterine Carcinosarcoma', "STES": "Stomach and Esophageal Carcinoma",
'UCEC': 'Uterine Corpus Endometrial Carcinoma', "TGCT": "Testicular Germ Cell Tumors",
'UVM': 'Uveal Melanoma', "THCA": "Thyroid carcinoma",
'KIPAN': 'Pan-Kidney Cohort', "THYM": "Thymoma",
'COADREAD': 'Colonrectal adenocarcinoma', "UCEC": "Uterine Corpus Endometrial Carcinoma",
'GBMLGG': 'Glioma', "UCS": "Uterine Carcinosarcoma",
'STES': 'Stomach and Esophageal Carcinoma' "UVM": "Uveal Melanoma"
}; };
morpheus.TcgaUtil.SAMPLE_TYPES = { morpheus.TcgaUtil.SAMPLE_TYPES = {
'01': 'Primary solid Tumor', '01': 'Primary solid Tumor',
'02': 'Recurrent Solid Tumor', '02': 'Recurrent Solid Tumor',
......
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